Query 025937
Match_columns 246
No_of_seqs 131 out of 1506
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.2E-47 2.5E-52 310.5 29.7 243 3-245 2-244 (244)
2 PRK14526 adenylate kinase; Pro 100.0 1.4E-40 3E-45 265.8 25.2 209 33-246 1-209 (211)
3 PRK00279 adk adenylate kinase; 100.0 2.3E-40 5.1E-45 266.9 26.6 213 33-245 1-213 (215)
4 PLN02459 probable adenylate ki 100.0 3.4E-40 7.4E-45 267.9 25.5 209 30-245 27-250 (261)
5 PRK14529 adenylate kinase; Pro 100.0 3E-40 6.5E-45 264.4 24.1 212 33-245 1-223 (223)
6 TIGR01351 adk adenylate kinase 100.0 2.4E-39 5.2E-44 260.1 26.2 209 34-245 1-210 (210)
7 PTZ00088 adenylate kinase 1; P 100.0 6.2E-38 1.4E-42 253.1 25.4 210 30-244 4-229 (229)
8 PRK14530 adenylate kinase; Pro 100.0 2.3E-36 5.1E-41 243.6 25.7 205 32-245 3-212 (215)
9 KOG3078 Adenylate kinase [Nucl 100.0 1.2E-35 2.6E-40 235.3 20.4 212 29-245 12-223 (235)
10 PRK13808 adenylate kinase; Pro 100.0 2.8E-34 6.1E-39 241.0 24.1 192 33-245 1-192 (333)
11 KOG3079 Uridylate kinase/adeny 100.0 4.9E-34 1.1E-38 215.8 22.6 187 29-245 5-192 (195)
12 PRK14528 adenylate kinase; Pro 100.0 2.4E-33 5.1E-38 220.9 24.4 185 33-244 2-186 (186)
13 PRK14532 adenylate kinase; Pro 100.0 1.1E-32 2.4E-37 217.9 25.0 186 33-245 1-186 (188)
14 PRK14531 adenylate kinase; Pro 100.0 1.2E-32 2.7E-37 216.6 24.2 181 32-244 2-182 (183)
15 cd01428 ADK Adenylate kinase ( 100.0 4.3E-32 9.4E-37 215.4 23.4 194 34-236 1-194 (194)
16 PLN02842 nucleotide kinase 100.0 1.7E-32 3.6E-37 240.5 22.8 200 36-245 1-201 (505)
17 PRK14527 adenylate kinase; Pro 100.0 2.1E-31 4.6E-36 211.0 24.6 188 29-244 3-190 (191)
18 PRK02496 adk adenylate kinase; 100.0 5.3E-31 1.2E-35 207.6 25.1 182 33-245 2-183 (184)
19 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 2.6E-30 5.6E-35 203.4 24.0 182 34-244 1-182 (183)
20 PLN02200 adenylate kinase fami 100.0 2.7E-30 6E-35 209.9 24.5 183 30-245 41-223 (234)
21 COG0563 Adk Adenylate kinase a 100.0 1.7E-29 3.6E-34 196.5 20.7 177 33-244 1-177 (178)
22 PF00406 ADK: Adenylate kinase 100.0 1E-28 2.2E-33 188.5 18.6 150 37-222 1-150 (151)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 6.6E-27 1.4E-31 184.7 24.5 183 32-245 3-186 (188)
24 PRK13974 thymidylate kinase; P 99.8 1.2E-17 2.6E-22 134.3 12.9 177 32-245 3-205 (212)
25 PRK01184 hypothetical protein; 99.7 6.8E-16 1.5E-20 121.4 21.0 170 33-245 2-177 (184)
26 PRK03839 putative kinase; Prov 99.7 1.8E-16 3.9E-21 124.3 16.4 151 33-245 1-152 (180)
27 PRK13973 thymidylate kinase; P 99.7 8E-16 1.7E-20 123.8 17.9 177 32-245 3-205 (213)
28 PRK08356 hypothetical protein; 99.7 2E-15 4.2E-20 119.9 15.3 118 31-160 4-136 (195)
29 PRK06217 hypothetical protein; 99.7 1.9E-15 4.1E-20 118.8 14.9 170 33-245 2-178 (183)
30 COG0125 Tmk Thymidylate kinase 99.7 4.8E-15 1E-19 117.7 15.2 178 31-245 2-202 (208)
31 PRK13949 shikimate kinase; Pro 99.7 1.1E-14 2.5E-19 112.8 17.0 109 33-159 2-114 (169)
32 COG0703 AroK Shikimate kinase 99.7 5.5E-15 1.2E-19 112.7 14.7 111 32-160 2-116 (172)
33 COG1102 Cmk Cytidylate kinase 99.6 3.8E-14 8.3E-19 105.7 17.7 112 33-160 1-112 (179)
34 PRK13975 thymidylate kinase; P 99.6 3.4E-14 7.4E-19 112.8 18.0 167 32-245 2-189 (196)
35 PRK00081 coaE dephospho-CoA ki 99.6 1.8E-14 3.9E-19 114.2 16.0 163 33-245 3-192 (194)
36 PHA02530 pseT polynucleotide k 99.6 5.1E-15 1.1E-19 125.2 13.4 166 32-235 2-171 (300)
37 PLN02924 thymidylate kinase 99.6 1.2E-14 2.7E-19 117.0 13.9 174 29-245 13-202 (220)
38 PRK14730 coaE dephospho-CoA ki 99.6 1.1E-14 2.5E-19 115.3 12.4 164 33-245 2-193 (195)
39 PRK03731 aroL shikimate kinase 99.6 8.2E-14 1.8E-18 108.3 17.0 109 33-160 3-115 (171)
40 PRK13948 shikimate kinase; Pro 99.6 8.8E-14 1.9E-18 108.7 15.4 112 29-158 7-122 (182)
41 PRK00625 shikimate kinase; Pro 99.6 7.9E-14 1.7E-18 108.2 14.7 115 33-160 1-117 (173)
42 PRK04040 adenylate kinase; Pro 99.6 1.7E-13 3.6E-18 107.9 16.3 177 32-245 2-188 (188)
43 PRK00698 tmk thymidylate kinas 99.6 5.7E-14 1.2E-18 112.2 13.8 175 31-245 2-201 (205)
44 PRK08233 hypothetical protein; 99.6 3.4E-14 7.3E-19 111.4 12.2 169 31-245 2-176 (182)
45 PRK13947 shikimate kinase; Pro 99.6 1.3E-13 2.8E-18 107.1 14.7 109 34-160 3-115 (171)
46 COG1936 Predicted nucleotide k 99.6 3.1E-13 6.8E-18 102.2 16.0 152 33-245 1-155 (180)
47 COG3265 GntK Gluconate kinase 99.6 8.2E-14 1.8E-18 102.4 11.8 154 38-245 1-158 (161)
48 COG0237 CoaE Dephospho-CoA kin 99.6 9.4E-14 2E-18 109.9 12.9 163 32-245 2-191 (201)
49 cd01672 TMPK Thymidine monopho 99.6 7E-13 1.5E-17 105.1 18.2 173 33-245 1-199 (200)
50 KOG3354 Gluconate kinase [Carb 99.6 8.5E-14 1.8E-18 102.9 11.6 166 30-244 10-186 (191)
51 PRK14734 coaE dephospho-CoA ki 99.5 1.3E-13 2.7E-18 109.8 13.5 164 33-245 2-193 (200)
52 PRK07933 thymidylate kinase; V 99.5 1.3E-13 2.8E-18 110.8 13.5 177 33-244 1-211 (213)
53 TIGR02173 cyt_kin_arch cytidyl 99.5 9.3E-13 2E-17 102.1 17.8 112 33-160 1-113 (171)
54 PRK13946 shikimate kinase; Pro 99.5 2.8E-13 6E-18 106.6 14.8 167 29-245 7-175 (184)
55 TIGR00041 DTMP_kinase thymidyl 99.5 5.7E-13 1.2E-17 105.7 16.6 123 32-160 3-149 (195)
56 PRK14731 coaE dephospho-CoA ki 99.5 1.5E-13 3.3E-18 110.1 13.4 167 30-245 3-201 (208)
57 PRK00131 aroK shikimate kinase 99.5 3.6E-13 7.9E-18 104.7 15.0 115 30-160 2-118 (175)
58 PRK06762 hypothetical protein; 99.5 5.1E-13 1.1E-17 103.3 15.5 160 31-244 1-162 (166)
59 PRK04182 cytidylate kinase; Pr 99.5 1.3E-12 2.9E-17 102.0 17.2 111 33-160 1-113 (180)
60 PLN02422 dephospho-CoA kinase 99.5 4.7E-13 1E-17 108.0 14.8 163 34-245 3-193 (232)
61 PRK08118 topology modulation p 99.5 7.6E-14 1.7E-18 107.9 9.8 100 33-161 2-101 (167)
62 PRK05057 aroK shikimate kinase 99.5 1.3E-12 2.9E-17 101.6 16.0 111 32-160 4-118 (172)
63 KOG3347 Predicted nucleotide k 99.5 7.2E-13 1.6E-17 97.5 13.4 158 30-244 5-164 (176)
64 PRK14021 bifunctional shikimat 99.5 1.5E-12 3.3E-17 118.1 18.5 117 29-159 3-123 (542)
65 PRK14733 coaE dephospho-CoA ki 99.5 1.7E-12 3.7E-17 103.0 16.4 166 31-245 5-197 (204)
66 TIGR00152 dephospho-CoA kinase 99.5 5.9E-13 1.3E-17 105.1 13.5 160 34-241 1-187 (188)
67 PLN02199 shikimate kinase 99.5 3.2E-12 6.9E-17 105.7 17.8 111 30-158 100-214 (303)
68 KOG3220 Similar to bacterial d 99.5 8E-13 1.7E-17 102.0 13.1 163 33-244 2-192 (225)
69 TIGR01313 therm_gnt_kin carboh 99.5 1.7E-12 3.7E-17 100.0 14.9 158 35-245 1-162 (163)
70 PF13671 AAA_33: AAA domain; P 99.5 4.6E-13 9.9E-18 100.8 11.5 117 34-161 1-120 (143)
71 PTZ00451 dephospho-CoA kinase; 99.5 3.4E-12 7.4E-17 104.0 15.5 164 33-244 2-205 (244)
72 cd02030 NDUO42 NADH:Ubiquinone 99.5 2.5E-12 5.4E-17 103.9 14.6 178 34-242 1-217 (219)
73 cd02022 DPCK Dephospho-coenzym 99.4 3.7E-12 8E-17 99.7 14.3 116 34-160 1-143 (179)
74 PRK14732 coaE dephospho-CoA ki 99.4 2.6E-12 5.6E-17 101.8 13.4 162 34-245 1-189 (196)
75 PRK08154 anaerobic benzoate ca 99.4 6.1E-12 1.3E-16 106.7 16.1 119 28-160 129-248 (309)
76 PF02223 Thymidylate_kin: Thym 99.4 1.4E-12 3.1E-17 102.7 11.4 162 37-240 1-186 (186)
77 PRK13976 thymidylate kinase; P 99.4 1.2E-11 2.5E-16 99.1 16.5 116 33-159 1-145 (209)
78 PRK10078 ribose 1,5-bisphospho 99.4 3.4E-12 7.3E-17 100.6 13.2 161 32-245 2-175 (186)
79 PF01202 SKI: Shikimate kinase 99.4 8.4E-12 1.8E-16 95.7 13.9 102 41-160 1-106 (158)
80 PF01121 CoaE: Dephospho-CoA k 99.4 1.8E-12 3.9E-17 101.2 9.3 117 33-160 1-144 (180)
81 TIGR03574 selen_PSTK L-seryl-t 99.4 2.4E-11 5.2E-16 100.1 16.2 112 34-160 1-117 (249)
82 PRK03333 coaE dephospho-CoA ki 99.4 2.2E-11 4.8E-16 106.5 14.6 163 33-245 2-191 (395)
83 cd00464 SK Shikimate kinase (S 99.4 2.4E-11 5.2E-16 92.5 13.2 109 35-160 2-113 (154)
84 COG1428 Deoxynucleoside kinase 99.3 5.7E-11 1.2E-15 93.0 14.9 30 32-61 4-33 (216)
85 cd02021 GntK Gluconate kinase 99.3 2.6E-11 5.7E-16 92.1 12.9 114 34-160 1-119 (150)
86 cd01673 dNK Deoxyribonucleosid 99.3 5.6E-11 1.2E-15 94.1 15.0 121 34-160 1-146 (193)
87 PRK12339 2-phosphoglycerate ki 99.3 4.7E-11 1E-15 94.6 14.0 175 31-245 2-196 (197)
88 PRK07261 topology modulation p 99.3 5.1E-12 1.1E-16 98.2 8.2 101 33-161 1-101 (171)
89 KOG3327 Thymidylate kinase/ade 99.3 2.6E-11 5.7E-16 92.4 11.4 174 30-245 3-194 (208)
90 PRK09825 idnK D-gluconate kina 99.3 4.9E-11 1.1E-15 93.0 13.2 158 32-245 3-167 (176)
91 smart00072 GuKc Guanylate kina 99.3 9.3E-12 2E-16 97.9 8.8 161 32-245 2-181 (184)
92 PRK14738 gmk guanylate kinase; 99.3 6.3E-11 1.4E-15 94.8 12.9 165 29-245 10-193 (206)
93 COG0283 Cmk Cytidylate kinase 99.3 2.8E-10 6.2E-15 89.3 15.2 39 32-70 4-42 (222)
94 COG0194 Gmk Guanylate kinase [ 99.3 1.5E-10 3.3E-15 88.9 12.5 161 31-244 3-180 (191)
95 COG4088 Predicted nucleotide k 99.2 1.9E-10 4.1E-15 89.5 12.6 115 33-160 2-123 (261)
96 PRK11545 gntK gluconate kinase 99.2 1.8E-10 3.8E-15 88.8 12.4 154 38-245 1-159 (163)
97 TIGR02322 phosphon_PhnN phosph 99.2 4.6E-10 1E-14 87.8 14.6 161 33-245 2-177 (179)
98 PRK13477 bifunctional pantoate 99.2 5.3E-10 1.2E-14 99.9 16.4 41 29-69 281-321 (512)
99 cd02020 CMPK Cytidine monophos 99.2 4.2E-11 9.1E-16 90.4 8.1 103 34-159 1-103 (147)
100 PRK05480 uridine/cytidine kina 99.2 2.3E-10 5E-15 91.8 12.7 39 29-67 3-44 (209)
101 PRK06547 hypothetical protein; 99.2 6.7E-11 1.5E-15 91.8 9.0 126 28-160 11-139 (172)
102 PRK13951 bifunctional shikimat 99.2 4.1E-10 9E-15 100.8 15.2 108 33-159 1-112 (488)
103 COG2019 AdkA Archaeal adenylat 99.2 8.2E-10 1.8E-14 83.1 13.8 175 32-245 4-187 (189)
104 cd00227 CPT Chloramphenicol (C 99.2 1.4E-09 3E-14 84.9 15.4 121 32-160 2-132 (175)
105 PRK14737 gmk guanylate kinase; 99.2 7.2E-10 1.6E-14 87.2 13.3 165 30-245 2-183 (186)
106 PRK05537 bifunctional sulfate 99.2 9.4E-10 2E-14 100.2 15.6 131 14-157 374-510 (568)
107 PF13207 AAA_17: AAA domain; P 99.2 7.7E-12 1.7E-16 91.4 1.7 34 34-67 1-34 (121)
108 PRK05541 adenylylsulfate kinas 99.1 1.8E-09 3.9E-14 84.2 13.8 112 30-158 5-121 (176)
109 PRK00300 gmk guanylate kinase; 99.1 2E-09 4.2E-14 86.1 13.8 165 30-245 3-183 (205)
110 TIGR00017 cmk cytidylate kinas 99.1 3.7E-09 7.9E-14 85.2 15.2 39 32-70 2-40 (217)
111 TIGR01663 PNK-3'Pase polynucle 99.1 1E-09 2.3E-14 98.4 12.5 106 28-161 365-470 (526)
112 PRK00023 cmk cytidylate kinase 99.1 3.1E-09 6.7E-14 86.1 13.9 38 32-69 4-41 (225)
113 PRK06696 uridine kinase; Valid 99.1 1.1E-09 2.3E-14 88.8 10.3 53 16-68 5-63 (223)
114 PRK05416 glmZ(sRNA)-inactivati 99.1 2.2E-08 4.8E-13 83.8 18.1 99 31-158 5-105 (288)
115 PRK12338 hypothetical protein; 99.1 1.3E-08 2.8E-13 85.7 16.7 43 31-73 3-45 (319)
116 COG0645 Predicted kinase [Gene 99.1 1E-08 2.3E-13 77.7 14.2 122 33-161 2-126 (170)
117 PRK11860 bifunctional 3-phosph 99.0 9.5E-09 2.1E-13 95.7 16.7 41 30-70 440-480 (661)
118 TIGR03263 guanyl_kin guanylate 99.0 4.4E-09 9.4E-14 82.3 12.4 162 33-245 2-179 (180)
119 PRK07667 uridine kinase; Provi 99.0 2.1E-09 4.6E-14 85.2 10.4 47 23-69 8-59 (193)
120 PF07931 CPT: Chloramphenicol 99.0 1.4E-09 3.1E-14 84.1 8.4 113 33-160 2-131 (174)
121 PRK00889 adenylylsulfate kinas 99.0 5.7E-09 1.2E-13 81.3 11.5 109 30-156 2-117 (175)
122 COG4639 Predicted kinase [Gene 99.0 9.6E-09 2.1E-13 76.6 11.8 115 32-159 2-117 (168)
123 PF03668 ATP_bind_2: P-loop AT 99.0 8E-08 1.7E-12 79.2 18.1 148 33-245 2-155 (284)
124 TIGR00455 apsK adenylylsulfate 99.0 1.5E-08 3.3E-13 79.6 12.5 114 28-155 14-132 (184)
125 COG0529 CysC Adenylylsulfate k 98.9 4.2E-08 9.2E-13 74.7 13.4 115 28-156 19-138 (197)
126 TIGR00235 udk uridine kinase. 98.9 8.5E-09 1.8E-13 82.6 10.3 39 28-66 2-43 (207)
127 PRK03846 adenylylsulfate kinas 98.9 1.8E-08 3.9E-13 80.2 11.9 113 28-155 20-138 (198)
128 PF01591 6PF2K: 6-phosphofruct 98.9 4.1E-08 8.9E-13 78.9 13.5 157 29-215 9-179 (222)
129 PF01583 APS_kinase: Adenylyls 98.9 1.1E-08 2.3E-13 77.7 9.2 111 31-156 1-117 (156)
130 KOG3877 NADH:ubiquinone oxidor 98.9 2.5E-07 5.4E-12 75.3 16.6 132 29-161 68-240 (393)
131 PF08433 KTI12: Chromatin asso 98.9 4.3E-08 9.2E-13 81.4 12.4 110 33-160 2-120 (270)
132 PF13238 AAA_18: AAA domain; P 98.9 3E-09 6.6E-14 78.1 5.0 109 35-160 1-113 (129)
133 PF06414 Zeta_toxin: Zeta toxi 98.9 1.4E-09 3E-14 86.6 3.4 121 29-161 12-143 (199)
134 TIGR03575 selen_PSTK_euk L-ser 98.9 4.6E-08 9.9E-13 83.4 12.8 48 112-160 129-176 (340)
135 PHA03132 thymidine kinase; Pro 98.9 5E-08 1.1E-12 88.1 13.3 130 31-160 256-423 (580)
136 PRK09518 bifunctional cytidyla 98.8 1.4E-07 3E-12 88.8 16.5 37 33-69 2-38 (712)
137 cd02027 APSK Adenosine 5'-phos 98.8 4.9E-08 1.1E-12 74.1 11.1 109 34-158 1-116 (149)
138 cd02024 NRK1 Nicotinamide ribo 98.8 1E-08 2.2E-13 80.4 7.1 35 34-68 1-36 (187)
139 PF00625 Guanylate_kin: Guanyl 98.8 1.3E-08 2.8E-13 79.9 7.5 163 32-246 2-182 (183)
140 PRK05506 bifunctional sulfate 98.8 4.2E-08 9.1E-13 91.1 11.6 114 29-156 457-575 (632)
141 PTZ00301 uridine kinase; Provi 98.8 7.5E-08 1.6E-12 77.1 10.2 26 31-56 2-27 (210)
142 PRK04220 2-phosphoglycerate ki 98.8 3E-07 6.4E-12 76.9 13.7 44 28-72 88-132 (301)
143 PRK12269 bifunctional cytidyla 98.7 5.2E-07 1.1E-11 85.6 16.7 40 31-70 33-72 (863)
144 cd02023 UMPK Uridine monophosp 98.7 2E-07 4.2E-12 74.1 11.6 34 34-67 1-37 (198)
145 COG0572 Udk Uridine kinase [Nu 98.7 1.5E-07 3.3E-12 74.8 9.9 121 30-160 6-149 (218)
146 PRK12337 2-phosphoglycerate ki 98.7 1.6E-06 3.5E-11 76.3 17.3 44 29-73 252-296 (475)
147 COG1660 Predicted P-loop-conta 98.7 1.9E-06 4.2E-11 69.6 16.2 147 33-245 2-156 (286)
148 PRK07429 phosphoribulokinase; 98.7 4.1E-07 8.9E-12 77.6 12.5 38 29-66 5-45 (327)
149 PLN02772 guanylate kinase 98.7 5.1E-07 1.1E-11 77.9 13.0 167 31-245 134-317 (398)
150 PRK09270 nucleoside triphospha 98.7 1E-06 2.2E-11 71.7 14.0 30 28-57 29-58 (229)
151 cd02019 NK Nucleoside/nucleoti 98.6 1.5E-07 3.2E-12 61.7 6.5 23 34-56 1-23 (69)
152 COG3709 Uncharacterized compon 98.6 7.8E-07 1.7E-11 66.9 10.6 64 141-244 117-180 (192)
153 PLN02348 phosphoribulokinase 98.6 4.6E-07 9.9E-12 78.2 10.6 30 28-57 45-74 (395)
154 PHA00729 NTP-binding motif con 98.6 8.7E-07 1.9E-11 71.2 10.9 113 31-160 16-140 (226)
155 PRK05439 pantothenate kinase; 98.5 6E-07 1.3E-11 75.8 8.3 40 28-67 82-128 (311)
156 PF00485 PRK: Phosphoribulokin 98.5 1.5E-07 3.2E-12 74.6 4.3 24 34-57 1-24 (194)
157 TIGR00554 panK_bact pantothena 98.4 8.8E-07 1.9E-11 74.2 8.3 39 29-67 59-104 (290)
158 cd02025 PanK Pantothenate kina 98.4 7.5E-07 1.6E-11 72.0 6.6 34 34-67 1-41 (220)
159 cd02026 PRK Phosphoribulokinas 98.4 3E-06 6.5E-11 70.7 9.8 33 34-66 1-36 (273)
160 cd02028 UMPK_like Uridine mono 98.4 1.1E-06 2.4E-11 68.7 6.6 36 34-69 1-41 (179)
161 KOG3308 Uncharacterized protei 98.3 9.7E-06 2.1E-10 63.2 10.6 121 32-161 4-150 (225)
162 KOG4235 Mitochondrial thymidin 98.3 2.3E-05 5E-10 60.8 12.4 36 126-161 141-176 (244)
163 COG2074 2-phosphoglycerate kin 98.3 6.7E-05 1.5E-09 60.6 15.2 46 28-73 85-130 (299)
164 PRK15453 phosphoribulokinase; 98.3 6E-06 1.3E-10 68.4 9.4 39 29-67 2-45 (290)
165 PF05191 ADK_lid: Adenylate ki 98.2 2.3E-07 4.9E-12 52.1 -0.0 36 159-194 1-36 (36)
166 PLN02318 phosphoribulokinase/u 98.2 1.6E-05 3.6E-10 72.0 10.6 39 28-66 61-100 (656)
167 PLN02165 adenylate isopentenyl 98.2 1.3E-06 2.9E-11 74.0 3.3 39 28-66 39-77 (334)
168 PTZ00322 6-phosphofructo-2-kin 98.1 1E-05 2.2E-10 75.7 8.6 120 31-159 214-346 (664)
169 PF00004 AAA: ATPase family as 98.1 2.5E-06 5.3E-11 62.7 3.6 29 35-63 1-29 (132)
170 PF05496 RuvB_N: Holliday junc 98.1 9.8E-06 2.1E-10 64.8 6.7 58 4-61 18-79 (233)
171 KOG0730 AAA+-type ATPase [Post 98.1 2.6E-05 5.7E-10 70.6 10.1 125 28-158 464-612 (693)
172 COG4185 Uncharacterized protei 98.1 0.00019 4E-09 54.2 12.5 115 32-160 2-118 (187)
173 TIGR03707 PPK2_P_aer polyphosp 98.1 0.00082 1.8E-08 54.4 17.2 184 28-244 27-221 (230)
174 TIGR02881 spore_V_K stage V sp 98.0 4.9E-05 1.1E-09 63.1 9.6 28 29-56 39-66 (261)
175 PF08303 tRNA_lig_kinase: tRNA 98.0 7.5E-05 1.6E-09 56.7 9.6 32 35-66 2-34 (168)
176 PF13173 AAA_14: AAA domain 98.0 9.5E-05 2.1E-09 54.4 9.9 98 33-155 3-104 (128)
177 TIGR00150 HI0065_YjeE ATPase, 98.0 2E-05 4.3E-10 58.3 6.0 45 15-59 5-49 (133)
178 PRK00091 miaA tRNA delta(2)-is 98.0 8.4E-06 1.8E-10 69.0 4.4 35 31-65 3-37 (307)
179 PRK12377 putative replication 98.0 0.00032 6.9E-09 57.6 13.3 107 31-158 100-216 (248)
180 PRK12724 flagellar biosynthesi 98.0 0.00013 2.8E-09 63.9 11.5 110 31-149 222-344 (432)
181 TIGR03709 PPK2_rel_1 polyphosp 97.9 0.00081 1.7E-08 55.5 15.5 172 29-233 53-232 (264)
182 PF13189 Cytidylate_kin2: Cyti 97.9 8.9E-05 1.9E-09 58.0 9.5 38 34-72 1-38 (179)
183 KOG0733 Nuclear AAA ATPase (VC 97.9 6E-05 1.3E-09 67.9 9.4 36 28-63 219-254 (802)
184 TIGR03708 poly_P_AMP_trns poly 97.9 0.00093 2E-08 59.9 16.8 171 29-232 37-215 (493)
185 PHA03136 thymidine kinase; Pro 97.9 0.00088 1.9E-08 57.7 15.8 25 137-161 190-214 (378)
186 COG1618 Predicted nucleotide k 97.9 1E-05 2.2E-10 61.0 3.6 29 30-58 3-31 (179)
187 CHL00181 cbbX CbbX; Provisiona 97.9 5.5E-05 1.2E-09 63.6 8.3 27 30-56 57-83 (287)
188 COG1072 CoaA Panthothenate kin 97.9 1.3E-05 2.8E-10 65.6 4.3 29 28-56 78-106 (283)
189 PF03215 Rad17: Rad17 cell cyc 97.9 1.9E-05 4.1E-10 71.4 5.5 57 5-61 14-74 (519)
190 PRK09169 hypothetical protein; 97.9 0.00024 5.2E-09 72.2 13.4 109 31-159 2109-2220(2316)
191 cd02029 PRK_like Phosphoribulo 97.9 7.9E-05 1.7E-09 61.4 8.5 35 34-68 1-40 (277)
192 KOG3062 RNA polymerase II elon 97.9 5.9E-05 1.3E-09 59.9 7.4 115 33-160 2-123 (281)
193 smart00763 AAA_PrkA PrkA AAA d 97.9 1.7E-05 3.6E-10 68.0 4.7 43 16-58 58-104 (361)
194 PRK05800 cobU adenosylcobinami 97.9 1.7E-05 3.7E-10 61.4 4.1 32 33-64 2-35 (170)
195 TIGR00390 hslU ATP-dependent p 97.8 1.9E-05 4.2E-10 68.9 4.0 34 31-64 46-79 (441)
196 PHA02575 1 deoxynucleoside mon 97.8 3.5E-05 7.7E-10 61.6 5.2 39 33-72 1-40 (227)
197 PLN02840 tRNA dimethylallyltra 97.8 2.4E-05 5.3E-10 68.4 4.5 37 29-65 18-54 (421)
198 PF13521 AAA_28: AAA domain; P 97.8 1.7E-05 3.7E-10 60.9 3.0 35 34-71 1-35 (163)
199 KOG0635 Adenosine 5'-phosphosu 97.8 0.00093 2E-08 50.0 11.8 29 28-56 27-55 (207)
200 PRK06761 hypothetical protein; 97.8 2.6E-05 5.6E-10 65.0 4.1 27 32-58 3-29 (282)
201 PRK04195 replication factor C 97.7 4.9E-05 1.1E-09 68.7 5.5 60 4-63 8-70 (482)
202 PF01745 IPT: Isopentenyl tran 97.7 6.8E-05 1.5E-09 59.4 5.6 121 33-158 2-137 (233)
203 smart00382 AAA ATPases associa 97.7 3E-05 6.6E-10 56.9 3.5 28 32-59 2-29 (148)
204 KOG0744 AAA+-type ATPase [Post 97.7 2.6E-05 5.7E-10 65.2 3.3 28 30-57 175-202 (423)
205 KOG2004 Mitochondrial ATP-depe 97.7 5.4E-05 1.2E-09 69.3 5.4 51 15-65 417-473 (906)
206 PRK05201 hslU ATP-dependent pr 97.7 3.5E-05 7.5E-10 67.3 3.8 33 32-64 50-82 (443)
207 TIGR02640 gas_vesic_GvpN gas v 97.7 5.3E-05 1.1E-09 62.9 4.8 30 32-61 21-50 (262)
208 PRK14962 DNA polymerase III su 97.7 6.3E-05 1.4E-09 67.4 5.6 55 4-58 8-62 (472)
209 PF07728 AAA_5: AAA domain (dy 97.7 3.6E-05 7.8E-10 57.4 3.3 28 35-62 2-29 (139)
210 TIGR00174 miaA tRNA isopenteny 97.7 4E-05 8.6E-10 64.1 3.7 32 34-65 1-32 (287)
211 COG0466 Lon ATP-dependent Lon 97.7 8.1E-05 1.8E-09 68.3 5.8 47 16-62 330-380 (782)
212 PF13401 AAA_22: AAA domain; P 97.7 9.9E-05 2.2E-09 54.2 5.4 26 31-56 3-28 (131)
213 PLN02748 tRNA dimethylallyltra 97.6 5.3E-05 1.1E-09 67.4 4.4 37 29-65 19-55 (468)
214 COG1222 RPT1 ATP-dependent 26S 97.6 0.00095 2.1E-08 56.8 11.3 48 28-75 181-230 (406)
215 PF03976 PPK2: Polyphosphate k 97.6 0.0005 1.1E-08 55.7 9.4 171 29-232 28-206 (228)
216 KOG0734 AAA+-type ATPase conta 97.6 0.00019 4E-09 63.9 7.2 49 15-63 313-368 (752)
217 PLN00020 ribulose bisphosphate 97.6 0.00011 2.3E-09 63.2 5.5 41 29-69 145-187 (413)
218 PRK07003 DNA polymerase III su 97.6 0.0012 2.5E-08 61.9 12.5 54 5-59 11-65 (830)
219 KOG0731 AAA+-type ATPase conta 97.6 0.00029 6.4E-09 65.6 8.5 48 16-63 321-375 (774)
220 PRK12323 DNA polymerase III su 97.6 0.0011 2.4E-08 61.2 11.8 44 14-58 21-64 (700)
221 KOG0737 AAA+-type ATPase [Post 97.6 0.00046 9.9E-09 58.8 8.8 35 29-63 124-158 (386)
222 PHA02544 44 clamp loader, smal 97.6 0.00012 2.6E-09 62.4 5.5 56 4-60 15-71 (316)
223 TIGR02880 cbbX_cfxQ probable R 97.6 0.00049 1.1E-08 57.8 9.0 26 31-56 57-82 (284)
224 TIGR01650 PD_CobS cobaltochela 97.6 0.00014 3.1E-09 61.7 5.6 46 14-63 50-95 (327)
225 PRK12723 flagellar biosynthesi 97.6 0.00081 1.7E-08 58.8 10.5 27 30-56 172-198 (388)
226 PRK14956 DNA polymerase III su 97.6 0.00012 2.5E-09 65.3 5.2 54 5-59 13-67 (484)
227 PRK10646 ADP-binding protein; 97.5 0.00024 5.3E-09 53.7 6.0 46 13-58 9-54 (153)
228 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00041 8.8E-09 62.8 8.2 44 29-72 542-587 (802)
229 PRK07952 DNA replication prote 97.5 0.0034 7.4E-08 51.5 13.0 123 17-159 84-216 (244)
230 cd00009 AAA The AAA+ (ATPases 97.5 0.00024 5.1E-09 52.5 5.8 26 31-56 18-43 (151)
231 PRK07764 DNA polymerase III su 97.5 0.00096 2.1E-08 63.7 11.0 44 15-59 21-64 (824)
232 KOG0739 AAA+-type ATPase [Post 97.5 0.0012 2.6E-08 54.9 10.1 44 33-76 167-212 (439)
233 PRK14961 DNA polymerase III su 97.5 0.0002 4.4E-09 62.3 5.9 53 5-58 11-64 (363)
234 PF02367 UPF0079: Uncharacteri 97.5 0.00013 2.9E-09 53.1 4.0 31 29-59 12-42 (123)
235 PRK08099 bifunctional DNA-bind 97.5 0.00019 4.1E-09 63.1 5.6 49 13-61 195-248 (399)
236 PRK03992 proteasome-activating 97.5 0.00011 2.5E-09 64.4 4.2 40 29-68 162-203 (389)
237 COG2256 MGS1 ATPase related to 97.5 0.00013 2.7E-09 62.9 4.2 35 29-63 45-79 (436)
238 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00012 2.6E-09 65.8 4.3 36 28-63 255-290 (489)
239 COG0324 MiaA tRNA delta(2)-iso 97.5 0.00015 3.3E-09 60.9 4.6 35 31-65 2-36 (308)
240 cd00071 GMPK Guanosine monopho 97.5 9.7E-05 2.1E-09 55.1 3.1 24 34-57 1-24 (137)
241 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00037 8E-09 56.3 6.7 52 14-67 22-78 (226)
242 TIGR03708 poly_P_AMP_trns poly 97.5 0.008 1.7E-07 54.0 15.6 158 27-232 294-474 (493)
243 TIGR03689 pup_AAA proteasome A 97.5 0.00055 1.2E-08 61.8 8.1 31 28-58 212-242 (512)
244 PRK13342 recombination factor 97.4 0.00017 3.7E-09 63.8 4.9 41 21-63 27-67 (413)
245 PLN03025 replication factor C 97.4 0.00019 4E-09 61.4 5.0 51 4-56 7-58 (319)
246 PF07726 AAA_3: ATPase family 97.4 7.8E-05 1.7E-09 54.4 2.2 29 35-63 2-30 (131)
247 PF03266 NTPase_1: NTPase; In 97.4 0.00015 3.2E-09 56.1 3.8 23 34-56 1-23 (168)
248 PRK05342 clpX ATP-dependent pr 97.4 0.00014 2.9E-09 64.2 4.0 33 32-64 108-140 (412)
249 PRK14963 DNA polymerase III su 97.4 0.00019 4.1E-09 64.9 4.9 53 5-58 9-62 (504)
250 TIGR01243 CDC48 AAA family ATP 97.4 0.0012 2.5E-08 62.9 10.4 35 29-63 484-518 (733)
251 PRK06645 DNA polymerase III su 97.4 0.00023 5E-09 64.3 5.3 54 5-59 16-70 (507)
252 KOG0738 AAA+-type ATPase [Post 97.4 0.0059 1.3E-07 52.7 13.2 31 33-63 246-276 (491)
253 PTZ00454 26S protease regulato 97.4 0.00018 4E-09 63.1 4.4 35 29-63 176-210 (398)
254 TIGR01242 26Sp45 26S proteasom 97.4 0.00019 4.2E-09 62.4 4.6 34 30-63 154-187 (364)
255 PLN02796 D-glycerate 3-kinase 97.4 0.00015 3.2E-09 62.0 3.7 37 30-66 98-139 (347)
256 KOG0735 AAA+-type ATPase [Post 97.4 0.00081 1.7E-08 61.9 8.5 118 30-156 699-843 (952)
257 TIGR00635 ruvB Holliday juncti 97.4 0.0004 8.7E-09 58.8 6.2 31 29-59 27-57 (305)
258 COG0802 Predicted ATPase or ki 97.4 0.00052 1.1E-08 51.4 5.8 45 14-58 7-51 (149)
259 PRK08903 DnaA regulatory inact 97.4 0.00077 1.7E-08 54.6 7.5 53 13-66 24-81 (227)
260 PF06309 Torsin: Torsin; Inte 97.4 0.00045 9.7E-09 50.3 5.3 29 28-56 49-77 (127)
261 PF00910 RNA_helicase: RNA hel 97.4 0.00014 3E-09 51.9 2.6 22 35-56 1-22 (107)
262 PF13245 AAA_19: Part of AAA d 97.4 0.00022 4.8E-09 47.5 3.4 26 31-56 9-35 (76)
263 PF07724 AAA_2: AAA domain (Cd 97.4 0.00021 4.5E-09 55.4 3.8 28 31-58 2-29 (171)
264 COG2812 DnaX DNA polymerase II 97.4 0.0025 5.4E-08 57.4 11.0 33 28-60 34-66 (515)
265 PRK06526 transposase; Provisio 97.3 0.002 4.4E-08 53.2 9.8 40 30-69 96-140 (254)
266 PRK14960 DNA polymerase III su 97.3 0.0003 6.5E-09 64.8 5.3 54 5-59 10-64 (702)
267 COG1126 GlnQ ABC-type polar am 97.3 0.00018 4E-09 57.0 3.4 27 28-54 24-50 (240)
268 TIGR00382 clpX endopeptidase C 97.3 0.00022 4.8E-09 62.7 4.2 31 33-63 117-147 (413)
269 TIGR01241 FtsH_fam ATP-depende 97.3 0.00031 6.7E-09 63.7 5.3 35 29-63 85-119 (495)
270 PRK00080 ruvB Holliday junctio 97.3 0.00043 9.2E-09 59.4 5.9 32 29-60 48-79 (328)
271 PRK14958 DNA polymerase III su 97.3 0.0003 6.5E-09 63.8 5.2 54 5-59 11-65 (509)
272 PRK06835 DNA replication prote 97.3 0.0062 1.3E-07 52.2 12.9 39 31-69 182-225 (329)
273 KOG0736 Peroxisome assembly fa 97.3 0.0017 3.7E-08 60.3 9.8 127 15-150 678-845 (953)
274 PRK14964 DNA polymerase III su 97.3 0.00032 7E-09 63.0 5.1 54 5-59 8-62 (491)
275 KOG0651 26S proteasome regulat 97.3 0.00053 1.2E-08 57.2 5.9 56 28-86 162-219 (388)
276 PRK09087 hypothetical protein; 97.3 0.00067 1.4E-08 55.1 6.5 36 32-67 44-79 (226)
277 PRK12402 replication factor C 97.3 0.00038 8.1E-09 59.7 5.4 42 14-57 20-61 (337)
278 TIGR03015 pepcterm_ATPase puta 97.3 0.00041 9E-09 57.5 5.4 37 21-57 31-68 (269)
279 PRK15455 PrkA family serine pr 97.3 0.00036 7.8E-09 63.3 5.2 41 16-56 83-127 (644)
280 PRK08116 hypothetical protein; 97.3 0.01 2.2E-07 49.5 13.4 38 32-69 114-156 (268)
281 TIGR01526 nadR_NMN_Atrans nico 97.3 0.00028 6.1E-09 60.4 4.2 30 32-61 162-191 (325)
282 PHA02244 ATPase-like protein 97.3 0.00033 7.1E-09 60.4 4.5 35 32-66 119-153 (383)
283 PRK06620 hypothetical protein; 97.3 0.00059 1.3E-08 54.9 5.7 30 33-62 45-74 (214)
284 PTZ00361 26 proteosome regulat 97.3 0.00031 6.6E-09 62.4 4.4 34 29-62 214-247 (438)
285 PLN03046 D-glycerate 3-kinase; 97.3 0.00026 5.5E-09 61.9 3.8 38 29-66 209-251 (460)
286 KOG1970 Checkpoint RAD17-RFC c 97.3 0.00051 1.1E-08 61.3 5.6 48 14-61 87-139 (634)
287 KOG4622 Predicted nucleotide k 97.3 0.0058 1.3E-07 47.7 10.7 120 34-160 3-143 (291)
288 PRK14957 DNA polymerase III su 97.3 0.00045 9.8E-09 62.9 5.4 44 14-58 21-64 (546)
289 PRK14955 DNA polymerase III su 97.3 0.00052 1.1E-08 60.5 5.6 54 5-59 11-65 (397)
290 PF05729 NACHT: NACHT domain 97.3 0.00026 5.7E-09 53.9 3.3 23 34-56 2-24 (166)
291 PF03308 ArgK: ArgK protein; 97.2 0.00047 1E-08 56.4 4.8 36 21-56 18-53 (266)
292 PF00448 SRP54: SRP54-type pro 97.2 0.00026 5.6E-09 56.2 3.2 25 32-56 1-25 (196)
293 PRK09435 membrane ATPase/prote 97.2 0.00062 1.4E-08 58.2 5.6 29 28-56 52-80 (332)
294 PF13191 AAA_16: AAA ATPase do 97.2 0.00043 9.3E-09 53.8 4.2 39 18-56 9-48 (185)
295 COG4619 ABC-type uncharacteriz 97.2 0.00019 4.1E-09 54.8 2.1 29 28-56 25-53 (223)
296 PRK10751 molybdopterin-guanine 97.2 0.00042 9.2E-09 53.6 3.9 28 30-57 4-31 (173)
297 PRK14729 miaA tRNA delta(2)-is 97.2 0.00051 1.1E-08 57.9 4.6 34 31-65 3-36 (300)
298 TIGR00763 lon ATP-dependent pr 97.2 0.00071 1.5E-08 64.6 6.1 48 15-62 326-377 (775)
299 PF10662 PduV-EutP: Ethanolami 97.2 0.00032 6.9E-09 52.4 3.0 23 33-55 2-24 (143)
300 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00048 1E-08 48.9 3.8 24 30-53 13-36 (107)
301 COG2255 RuvB Holliday junction 97.2 0.00088 1.9E-08 55.3 5.8 47 14-60 31-80 (332)
302 PRK14949 DNA polymerase III su 97.2 0.00058 1.3E-08 64.9 5.3 45 14-59 21-65 (944)
303 CHL00176 ftsH cell division pr 97.2 0.00058 1.3E-08 63.5 5.2 35 29-63 213-247 (638)
304 PHA02624 large T antigen; Prov 97.2 0.001 2.2E-08 60.7 6.4 47 18-64 417-463 (647)
305 PF03029 ATP_bind_1: Conserved 97.1 0.00023 4.9E-09 58.2 2.1 21 37-57 1-21 (238)
306 PRK08939 primosomal protein Dn 97.1 0.013 2.8E-07 49.8 12.8 105 31-157 155-270 (306)
307 COG1703 ArgK Putative periplas 97.1 0.00089 1.9E-08 55.7 5.4 39 18-56 37-75 (323)
308 COG1223 Predicted ATPase (AAA+ 97.1 0.0013 2.8E-08 53.8 6.2 41 31-71 150-192 (368)
309 PRK00440 rfc replication facto 97.1 0.00079 1.7E-08 57.2 5.3 50 5-56 12-62 (319)
310 PRK08084 DNA replication initi 97.1 0.0015 3.3E-08 53.3 6.7 34 32-65 45-83 (235)
311 PRK14088 dnaA chromosomal repl 97.1 0.0081 1.8E-07 53.7 11.8 38 33-70 131-175 (440)
312 COG1419 FlhF Flagellar GTP-bin 97.1 0.0015 3.2E-08 56.7 6.8 36 30-65 201-243 (407)
313 TIGR01223 Pmev_kin_anim phosph 97.1 0.055 1.2E-06 41.8 14.6 112 34-156 1-132 (182)
314 TIGR00602 rad24 checkpoint pro 97.1 0.00058 1.3E-08 63.2 4.6 55 5-59 79-137 (637)
315 PRK14951 DNA polymerase III su 97.1 0.00077 1.7E-08 62.2 5.4 54 5-59 11-65 (618)
316 PRK08533 flagellar accessory p 97.1 0.0035 7.6E-08 51.0 8.6 25 30-54 22-46 (230)
317 PRK14969 DNA polymerase III su 97.1 0.00083 1.8E-08 61.3 5.4 44 15-59 22-65 (527)
318 PRK05896 DNA polymerase III su 97.1 0.00086 1.9E-08 61.5 5.4 45 14-59 21-65 (605)
319 PF08477 Miro: Miro-like prote 97.1 0.00054 1.2E-08 49.3 3.4 23 34-56 1-23 (119)
320 PRK00149 dnaA chromosomal repl 97.1 0.011 2.5E-07 52.9 12.5 37 33-69 149-192 (450)
321 COG1219 ClpX ATP-dependent pro 97.1 0.00054 1.2E-08 57.4 3.6 33 31-63 96-128 (408)
322 TIGR01618 phage_P_loop phage n 97.1 0.00064 1.4E-08 54.7 3.9 35 29-65 9-43 (220)
323 KOG0989 Replication factor C, 97.1 0.001 2.2E-08 55.4 5.1 31 30-60 55-85 (346)
324 TIGR00362 DnaA chromosomal rep 97.1 0.013 2.8E-07 51.8 12.5 37 33-69 137-180 (405)
325 PF01695 IstB_IS21: IstB-like 97.1 0.0015 3.2E-08 51.0 5.8 108 30-159 45-161 (178)
326 KOG0729 26S proteasome regulat 97.0 0.0022 4.8E-08 52.6 6.8 45 28-72 207-253 (435)
327 PF13086 AAA_11: AAA domain; P 97.0 0.00082 1.8E-08 54.1 4.4 35 22-56 7-41 (236)
328 COG1484 DnaC DNA replication p 97.0 0.016 3.5E-07 47.9 12.0 39 31-69 104-147 (254)
329 PRK11034 clpA ATP-dependent Cl 97.0 0.0011 2.4E-08 62.8 5.6 29 33-61 489-517 (758)
330 TIGR00101 ureG urease accessor 97.0 0.00074 1.6E-08 53.7 3.8 25 32-56 1-25 (199)
331 PHA03134 thymidine kinase; Pro 97.0 0.075 1.6E-06 45.4 15.8 25 31-55 12-36 (340)
332 PRK08691 DNA polymerase III su 97.0 0.00092 2E-08 62.1 4.8 54 5-59 11-65 (709)
333 PRK05703 flhF flagellar biosyn 97.0 0.0093 2E-07 53.0 11.0 34 32-65 221-261 (424)
334 PRK14952 DNA polymerase III su 97.0 0.0011 2.5E-08 60.9 5.4 54 5-59 8-62 (584)
335 PRK06893 DNA replication initi 97.0 0.0025 5.4E-08 51.8 6.9 34 31-64 38-76 (229)
336 KOG0707 Guanylate kinase [Nucl 97.0 0.0028 6.1E-08 50.8 6.9 36 33-68 38-74 (231)
337 COG1136 SalX ABC-type antimicr 97.0 0.00072 1.6E-08 54.5 3.6 34 22-55 21-54 (226)
338 PRK10787 DNA-binding ATP-depen 97.0 0.0015 3.2E-08 62.3 6.3 47 15-61 328-378 (784)
339 PRK09111 DNA polymerase III su 97.0 0.0011 2.5E-08 61.1 5.3 46 14-60 29-74 (598)
340 PRK13695 putative NTPase; Prov 97.0 0.00069 1.5E-08 52.6 3.4 24 33-56 1-24 (174)
341 cd01130 VirB11-like_ATPase Typ 97.0 0.00096 2.1E-08 52.4 4.2 28 29-56 22-49 (186)
342 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0021 4.5E-08 52.6 6.4 37 28-64 17-58 (237)
343 COG1220 HslU ATP-dependent pro 97.0 0.00076 1.7E-08 57.0 3.7 34 30-63 48-81 (444)
344 PRK07994 DNA polymerase III su 97.0 0.0011 2.4E-08 61.5 5.1 44 15-59 22-65 (647)
345 KOG0726 26S proteasome regulat 97.0 0.0012 2.7E-08 54.7 4.8 51 27-77 214-266 (440)
346 PF03205 MobB: Molybdopterin g 97.0 0.00066 1.4E-08 50.8 3.0 24 33-56 1-24 (140)
347 KOG1532 GTPase XAB1, interacts 97.0 0.00069 1.5E-08 55.6 3.3 43 27-69 14-61 (366)
348 cd03115 SRP The signal recogni 97.0 0.00073 1.6E-08 52.3 3.4 31 34-64 2-37 (173)
349 COG3839 MalK ABC-type sugar tr 97.0 0.0007 1.5E-08 57.8 3.5 29 28-56 25-53 (338)
350 PRK08181 transposase; Validate 97.0 0.0085 1.9E-07 49.9 9.9 39 31-69 105-148 (269)
351 PRK14086 dnaA chromosomal repl 97.0 0.018 3.9E-07 53.1 12.7 37 34-70 316-359 (617)
352 COG1116 TauB ABC-type nitrate/ 97.0 0.00082 1.8E-08 54.5 3.6 31 26-56 23-53 (248)
353 PRK14974 cell division protein 97.0 0.00082 1.8E-08 57.7 3.8 26 31-56 139-164 (336)
354 KOG0743 AAA+-type ATPase [Post 96.9 0.00067 1.5E-08 59.3 3.2 36 28-63 231-266 (457)
355 TIGR00064 ftsY signal recognit 96.9 0.00093 2E-08 55.8 3.9 27 30-56 70-96 (272)
356 COG3896 Chloramphenicol 3-O-ph 96.9 0.013 2.7E-07 44.4 9.4 129 28-159 19-160 (205)
357 PRK10416 signal recognition pa 96.9 0.00094 2E-08 57.0 4.0 27 30-56 112-138 (318)
358 COG0464 SpoVK ATPases of the A 96.9 0.00088 1.9E-08 60.8 4.1 40 30-69 274-315 (494)
359 PF06745 KaiC: KaiC; InterPro 96.9 0.002 4.3E-08 52.1 5.8 37 29-65 16-58 (226)
360 cd01124 KaiC KaiC is a circadi 96.9 0.00067 1.5E-08 53.0 2.9 31 34-64 1-36 (187)
361 COG1855 ATPase (PilT family) [ 96.9 0.00068 1.5E-08 59.3 3.0 23 34-56 265-287 (604)
362 cd01131 PilT Pilus retraction 96.9 0.00087 1.9E-08 53.2 3.5 24 34-57 3-26 (198)
363 TIGR00750 lao LAO/AO transport 96.9 0.0014 2.9E-08 55.6 4.7 36 21-56 23-58 (300)
364 PRK14970 DNA polymerase III su 96.9 0.0019 4E-08 56.3 5.7 53 5-58 12-65 (367)
365 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0019 4.1E-08 55.2 5.5 43 15-57 67-113 (358)
366 COG3911 Predicted ATPase [Gene 96.9 0.001 2.2E-08 49.6 3.4 28 33-61 10-37 (183)
367 cd04155 Arl3 Arl3 subfamily. 96.9 0.0012 2.7E-08 50.6 4.1 26 30-55 12-37 (173)
368 COG0465 HflB ATP-dependent Zn 96.9 0.0019 4.2E-08 59.0 5.8 41 28-68 179-221 (596)
369 PRK13341 recombination factor 96.9 0.0017 3.7E-08 61.3 5.6 36 29-64 49-84 (725)
370 COG3842 PotA ABC-type spermidi 96.9 0.00093 2E-08 57.4 3.5 27 29-55 28-54 (352)
371 COG0542 clpA ATP-binding subun 96.9 0.003 6.5E-08 59.4 7.0 58 15-72 497-566 (786)
372 PRK04328 hypothetical protein; 96.9 0.0028 6.1E-08 52.2 6.3 35 29-63 20-59 (249)
373 PF01078 Mg_chelatase: Magnesi 96.9 0.00079 1.7E-08 53.4 2.8 26 32-57 22-47 (206)
374 PF13555 AAA_29: P-loop contai 96.9 0.0016 3.4E-08 41.4 3.6 24 33-56 24-47 (62)
375 TIGR01243 CDC48 AAA family ATP 96.9 0.0011 2.4E-08 63.0 4.3 34 29-62 209-242 (733)
376 PRK14948 DNA polymerase III su 96.9 0.0019 4.1E-08 60.0 5.6 54 5-59 11-65 (620)
377 PRK14950 DNA polymerase III su 96.9 0.0018 3.9E-08 59.9 5.4 54 5-59 11-65 (585)
378 PRK14953 DNA polymerase III su 96.8 0.002 4.4E-08 58.1 5.6 53 5-58 11-64 (486)
379 PF01712 dNK: Deoxynucleoside 96.8 0.002 4.3E-08 48.6 4.7 25 137-161 65-90 (146)
380 cd01120 RecA-like_NTPases RecA 96.8 0.00092 2E-08 50.5 2.9 23 34-56 1-23 (165)
381 PRK06067 flagellar accessory p 96.8 0.0032 7E-08 51.2 6.2 38 28-65 21-63 (234)
382 cd00544 CobU Adenosylcobinamid 96.8 0.0013 2.9E-08 50.8 3.7 24 34-57 1-24 (169)
383 TIGR00073 hypB hydrogenase acc 96.8 0.0024 5.1E-08 51.1 5.3 30 28-57 18-47 (207)
384 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.0013 2.8E-08 66.8 4.4 41 28-68 1626-1668(2281)
385 cd01918 HprK_C HprK/P, the bif 96.8 0.0014 3E-08 49.5 3.6 33 31-64 13-45 (149)
386 COG2884 FtsE Predicted ATPase 96.8 0.0012 2.7E-08 51.4 3.4 35 22-56 18-52 (223)
387 KOG1969 DNA replication checkp 96.8 0.0013 2.9E-08 60.7 4.1 34 30-63 324-357 (877)
388 TIGR02397 dnaX_nterm DNA polym 96.8 0.0025 5.5E-08 55.1 5.8 46 13-59 18-63 (355)
389 COG1224 TIP49 DNA helicase TIP 96.8 0.002 4.3E-08 54.9 4.7 30 28-57 61-90 (450)
390 PRK09183 transposase/IS protei 96.8 0.0021 4.6E-08 53.3 4.9 39 30-68 100-143 (259)
391 PF00931 NB-ARC: NB-ARC domain 96.8 0.0024 5.2E-08 53.4 5.2 38 18-55 5-42 (287)
392 COG0714 MoxR-like ATPases [Gen 96.8 0.0013 2.8E-08 56.5 3.7 32 32-63 43-74 (329)
393 COG1124 DppF ABC-type dipeptid 96.8 0.001 2.2E-08 53.8 2.7 36 21-56 22-57 (252)
394 PRK08451 DNA polymerase III su 96.8 0.0024 5.2E-08 58.0 5.4 54 4-58 8-62 (535)
395 cd04163 Era Era subfamily. Er 96.8 0.0013 2.9E-08 49.6 3.3 24 32-55 3-26 (168)
396 PRK06921 hypothetical protein; 96.8 0.034 7.4E-07 46.3 11.9 39 31-69 116-160 (266)
397 COG1117 PstB ABC-type phosphat 96.8 0.0012 2.7E-08 52.3 3.0 30 27-56 28-57 (253)
398 KOG0991 Replication factor C, 96.7 0.0011 2.4E-08 53.3 2.8 26 31-56 47-72 (333)
399 PHA03135 thymidine kinase; Pro 96.7 0.098 2.1E-06 44.7 14.5 25 31-55 9-33 (343)
400 PF00005 ABC_tran: ABC transpo 96.7 0.00095 2.1E-08 49.4 2.2 27 30-56 9-35 (137)
401 PF06068 TIP49: TIP49 C-termin 96.7 0.0034 7.4E-08 54.0 5.8 36 31-66 49-88 (398)
402 cd03292 ABC_FtsE_transporter F 96.7 0.0015 3.2E-08 52.3 3.5 28 29-56 24-51 (214)
403 PRK14959 DNA polymerase III su 96.7 0.0024 5.1E-08 58.9 5.1 44 15-59 22-65 (624)
404 TIGR03499 FlhF flagellar biosy 96.7 0.0016 3.5E-08 54.6 3.8 26 31-56 193-218 (282)
405 PF01926 MMR_HSR1: 50S ribosom 96.7 0.0014 2.9E-08 47.2 2.9 21 34-54 1-21 (116)
406 COG0378 HypB Ni2+-binding GTPa 96.7 0.0017 3.7E-08 50.7 3.5 31 33-63 14-48 (202)
407 PF13479 AAA_24: AAA domain 96.7 0.0014 3E-08 52.7 3.2 31 30-63 1-31 (213)
408 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0047 1E-07 50.1 6.3 36 28-63 16-56 (229)
409 PRK13768 GTPase; Provisional 96.7 0.0016 3.4E-08 53.8 3.6 25 32-56 2-26 (253)
410 TIGR00176 mobB molybdopterin-g 96.7 0.0014 3.1E-08 49.9 3.0 23 34-56 1-23 (155)
411 COG2326 Uncharacterized conser 96.7 0.081 1.8E-06 43.1 13.0 114 28-163 70-203 (270)
412 PRK14490 putative bifunctional 96.7 0.0016 3.5E-08 56.8 3.7 28 30-57 3-30 (369)
413 TIGR01166 cbiO cobalt transpor 96.7 0.0017 3.7E-08 51.1 3.5 28 29-56 15-42 (190)
414 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0017 3.6E-08 52.2 3.5 28 29-56 27-54 (218)
415 PRK05564 DNA polymerase III su 96.7 0.018 3.9E-07 49.1 10.0 44 14-58 9-52 (313)
416 cd00984 DnaB_C DnaB helicase C 96.7 0.013 2.7E-07 47.9 8.8 36 28-63 9-50 (242)
417 PRK14965 DNA polymerase III su 96.7 0.0031 6.7E-08 58.2 5.7 54 5-59 11-65 (576)
418 PRK05563 DNA polymerase III su 96.7 0.0032 6.9E-08 57.9 5.7 54 5-59 11-65 (559)
419 TIGR00960 3a0501s02 Type II (G 96.7 0.0017 3.7E-08 52.2 3.5 28 29-56 26-53 (216)
420 PRK14954 DNA polymerase III su 96.7 0.0029 6.2E-08 58.7 5.4 45 14-59 21-65 (620)
421 TIGR02639 ClpA ATP-dependent C 96.7 0.0032 6.9E-08 59.9 5.8 34 34-67 486-521 (731)
422 PRK10867 signal recognition pa 96.7 0.0019 4E-08 57.3 4.0 35 30-64 98-138 (433)
423 PRK07133 DNA polymerase III su 96.7 0.0025 5.4E-08 59.7 4.9 44 15-59 24-67 (725)
424 TIGR02237 recomb_radB DNA repa 96.7 0.0021 4.6E-08 51.3 4.0 37 28-64 8-49 (209)
425 PRK13851 type IV secretion sys 96.7 0.0016 3.5E-08 56.0 3.5 31 27-57 157-187 (344)
426 cd03301 ABC_MalK_N The N-termi 96.7 0.0018 4E-08 51.8 3.6 28 29-56 23-50 (213)
427 PRK00771 signal recognition pa 96.7 0.0018 3.9E-08 57.5 3.8 27 30-56 93-119 (437)
428 cd03116 MobB Molybdenum is an 96.7 0.002 4.3E-08 49.3 3.6 24 33-56 2-25 (159)
429 PRK11331 5-methylcytosine-spec 96.7 0.0016 3.4E-08 57.7 3.3 27 31-57 193-219 (459)
430 TIGR01425 SRP54_euk signal rec 96.7 0.002 4.3E-08 56.9 4.0 27 30-56 98-124 (429)
431 KOG0727 26S proteasome regulat 96.7 0.0053 1.1E-07 50.1 6.0 48 28-75 185-234 (408)
432 TIGR02655 circ_KaiC circadian 96.6 0.0024 5.3E-08 57.7 4.6 61 28-88 259-324 (484)
433 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0019 4.2E-08 51.6 3.6 28 29-56 24-51 (211)
434 TIGR02673 FtsE cell division A 96.6 0.0019 4.1E-08 51.8 3.5 29 28-56 24-52 (214)
435 PRK10463 hydrogenase nickel in 96.6 0.0022 4.7E-08 53.7 3.9 29 28-56 100-128 (290)
436 cd03262 ABC_HisP_GlnQ_permease 96.6 0.002 4.3E-08 51.6 3.6 28 29-56 23-50 (213)
437 cd03269 ABC_putative_ATPase Th 96.6 0.002 4.3E-08 51.5 3.6 27 30-56 24-50 (210)
438 COG1120 FepC ABC-type cobalami 96.6 0.0019 4.2E-08 53.0 3.4 35 29-63 25-63 (258)
439 cd03222 ABC_RNaseL_inhibitor T 96.6 0.002 4.4E-08 50.2 3.3 27 30-56 23-49 (177)
440 PRK04296 thymidine kinase; Pro 96.6 0.002 4.4E-08 50.8 3.4 25 32-56 2-26 (190)
441 cd03219 ABC_Mj1267_LivG_branch 96.6 0.0019 4E-08 52.6 3.3 28 29-56 23-50 (236)
442 cd03263 ABC_subfamily_A The AB 96.6 0.0021 4.5E-08 51.7 3.6 29 28-56 24-52 (220)
443 cd03224 ABC_TM1139_LivF_branch 96.6 0.002 4.4E-08 51.8 3.5 28 29-56 23-50 (222)
444 TIGR02211 LolD_lipo_ex lipopro 96.6 0.0021 4.6E-08 51.7 3.6 28 29-56 28-55 (221)
445 cd03261 ABC_Org_Solvent_Resist 96.6 0.0021 4.6E-08 52.3 3.6 28 29-56 23-50 (235)
446 PRK14722 flhF flagellar biosyn 96.6 0.0022 4.7E-08 55.8 3.7 27 30-56 135-161 (374)
447 cd01394 radB RadB. The archaea 96.6 0.0026 5.6E-08 51.2 4.0 36 29-64 16-56 (218)
448 PF04665 Pox_A32: Poxvirus A32 96.6 0.0024 5.3E-08 52.0 3.7 28 29-56 10-37 (241)
449 cd03238 ABC_UvrA The excision 96.6 0.0023 4.9E-08 49.9 3.5 26 29-54 18-43 (176)
450 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0022 4.7E-08 51.1 3.5 28 29-56 23-50 (205)
451 cd03259 ABC_Carb_Solutes_like 96.6 0.0023 4.9E-08 51.3 3.6 28 29-56 23-50 (213)
452 TIGR03608 L_ocin_972_ABC putat 96.6 0.0022 4.8E-08 51.0 3.5 27 30-56 22-48 (206)
453 TIGR00959 ffh signal recogniti 96.6 0.0024 5.2E-08 56.6 4.0 27 30-56 97-123 (428)
454 PRK06305 DNA polymerase III su 96.6 0.0043 9.2E-08 55.6 5.6 45 14-59 22-66 (451)
455 cd03264 ABC_drug_resistance_li 96.6 0.0021 4.5E-08 51.5 3.3 25 31-56 25-49 (211)
456 cd03223 ABCD_peroxisomal_ALDP 96.6 0.0024 5.3E-08 49.1 3.6 29 28-56 23-51 (166)
457 PRK11629 lolD lipoprotein tran 96.6 0.0022 4.9E-08 52.1 3.5 28 29-56 32-59 (233)
458 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0024 5.2E-08 49.5 3.5 28 29-56 23-50 (173)
459 COG5192 BMS1 GTP-binding prote 96.6 0.0022 4.8E-08 57.6 3.7 27 30-56 67-93 (1077)
460 cd03246 ABCC_Protease_Secretio 96.6 0.0025 5.4E-08 49.4 3.6 28 29-56 25-52 (173)
461 cd03260 ABC_PstB_phosphate_tra 96.6 0.0023 5.1E-08 51.7 3.6 28 29-56 23-50 (227)
462 COG4240 Predicted kinase [Gene 96.6 0.0034 7.3E-08 50.4 4.3 40 29-68 47-92 (300)
463 TIGR02315 ABC_phnC phosphonate 96.6 0.0023 5E-08 52.3 3.6 29 28-56 24-52 (243)
464 cd03235 ABC_Metallic_Cations A 96.6 0.0021 4.6E-08 51.5 3.3 28 29-56 22-49 (213)
465 cd03229 ABC_Class3 This class 96.6 0.0025 5.4E-08 49.6 3.6 27 30-56 24-50 (178)
466 cd03216 ABC_Carb_Monos_I This 96.6 0.0024 5.3E-08 49.0 3.5 28 29-56 23-50 (163)
467 cd03258 ABC_MetN_methionine_tr 96.6 0.0024 5.1E-08 51.9 3.6 28 29-56 28-55 (233)
468 cd03247 ABCC_cytochrome_bd The 96.6 0.0025 5.4E-08 49.6 3.6 28 29-56 25-52 (178)
469 PRK06647 DNA polymerase III su 96.6 0.0038 8.3E-08 57.3 5.3 54 5-59 11-65 (563)
470 PF03193 DUF258: Protein of un 96.5 0.0026 5.6E-08 48.6 3.5 24 33-56 36-59 (161)
471 cd03232 ABC_PDR_domain2 The pl 96.5 0.0023 5E-08 50.5 3.4 26 29-54 30-55 (192)
472 cd03256 ABC_PhnC_transporter A 96.5 0.0024 5.2E-08 52.1 3.6 28 29-56 24-51 (241)
473 PRK13540 cytochrome c biogenes 96.5 0.0025 5.5E-08 50.5 3.6 28 29-56 24-51 (200)
474 PRK10247 putative ABC transpor 96.5 0.0025 5.4E-08 51.6 3.6 28 29-56 30-57 (225)
475 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0023 5E-08 51.5 3.4 27 30-56 28-54 (220)
476 cd03257 ABC_NikE_OppD_transpor 96.5 0.0023 5.1E-08 51.7 3.4 29 28-56 27-55 (228)
477 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.0025 5.4E-08 52.0 3.6 28 29-56 24-51 (236)
478 cd03214 ABC_Iron-Siderophores_ 96.5 0.0027 5.8E-08 49.5 3.6 28 29-56 22-49 (180)
479 PRK13541 cytochrome c biogenes 96.5 0.0026 5.7E-08 50.2 3.6 27 30-56 24-50 (195)
480 cd03218 ABC_YhbG The ABC trans 96.5 0.0025 5.5E-08 51.7 3.6 28 29-56 23-50 (232)
481 PRK05642 DNA replication initi 96.5 0.011 2.4E-07 48.2 7.3 36 33-68 46-86 (234)
482 cd03228 ABCC_MRP_Like The MRP 96.5 0.0028 6E-08 49.0 3.6 29 28-56 24-52 (171)
483 cd03296 ABC_CysA_sulfate_impor 96.5 0.0026 5.5E-08 52.0 3.6 27 30-56 26-52 (239)
484 cd03265 ABC_DrrA DrrA is the A 96.5 0.0026 5.7E-08 51.2 3.6 27 30-56 24-50 (220)
485 KOG2028 ATPase related to the 96.5 0.0032 7E-08 53.9 4.1 28 29-56 159-186 (554)
486 PRK11784 tRNA 2-selenouridine 96.5 0.019 4.2E-07 49.5 9.0 117 29-160 138-257 (345)
487 TIGR02323 CP_lyasePhnK phospho 96.5 0.0025 5.4E-08 52.5 3.4 29 28-56 25-53 (253)
488 PRK14250 phosphate ABC transpo 96.5 0.0026 5.7E-08 52.0 3.5 28 29-56 26-53 (241)
489 TIGR02928 orc1/cdc6 family rep 96.5 0.0047 1E-07 53.6 5.3 28 29-56 37-64 (365)
490 cd03215 ABC_Carb_Monos_II This 96.5 0.0027 5.8E-08 49.6 3.4 28 29-56 23-50 (182)
491 smart00173 RAS Ras subfamily o 96.5 0.0026 5.7E-08 48.3 3.3 21 34-54 2-22 (164)
492 PHA03138 thymidine kinase; Pro 96.5 0.031 6.6E-07 47.7 9.9 25 32-56 12-36 (340)
493 PF00437 T2SE: Type II/IV secr 96.5 0.0028 6.1E-08 52.7 3.7 37 20-56 115-151 (270)
494 TIGR03771 anch_rpt_ABC anchore 96.5 0.0027 5.9E-08 51.3 3.5 27 30-56 4-30 (223)
495 PRK15177 Vi polysaccharide exp 96.5 0.0027 5.9E-08 51.0 3.5 27 30-56 11-37 (213)
496 PRK14087 dnaA chromosomal repl 96.5 0.066 1.4E-06 48.0 12.5 37 34-70 143-186 (450)
497 TIGR01978 sufC FeS assembly AT 96.5 0.0028 6E-08 51.8 3.5 27 29-55 23-49 (243)
498 PRK00411 cdc6 cell division co 96.5 0.0065 1.4E-07 53.4 6.1 41 16-56 37-79 (394)
499 cd03268 ABC_BcrA_bacitracin_re 96.5 0.0029 6.4E-08 50.4 3.6 27 30-56 24-50 (208)
500 PRK11248 tauB taurine transpor 96.5 0.0029 6.2E-08 52.3 3.6 28 29-56 24-51 (255)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=1.2e-47 Score=310.47 Aligned_cols=243 Identities=94% Similarity=1.396 Sum_probs=231.0
Q ss_pred cccccccCCCCchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHH
Q 025937 3 SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 82 (246)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~ 82 (246)
|.-++++..-|..+++.++.+++.+..+++++|+|+|||||||||+|+.|+++||+.|+++++++|+++..++++|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~ 81 (244)
T PLN02674 2 SAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 81 (244)
T ss_pred cccccccccCchHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHH
Confidence 45667888889999999999998766666789999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025937 83 EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (246)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 162 (246)
+++..|..+|++.+..++.+++....+.+|||+||||++..|++.|++.+...+..++.+|+|++|++++.+|+.+|+.|
T Consensus 82 ~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~ 161 (244)
T PLN02674 82 EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIH 161 (244)
T ss_pred HHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence 99999999999999999999998887779999999999999999999988888889999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHH
Q 025937 163 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 242 (246)
Q Consensus 163 ~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~ 242 (246)
+.||+.||..|+||..++.|+.|++++.+|.+|..+.+++|++.|+....++.+||.+.+.++.|||++++++|++.|..
T Consensus 162 ~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~ 241 (244)
T PLN02674 162 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQK 241 (244)
T ss_pred cccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred Hhc
Q 025937 243 ALS 245 (246)
Q Consensus 243 ~l~ 245 (246)
+|+
T Consensus 242 ~l~ 244 (244)
T PLN02674 242 ALS 244 (244)
T ss_pred HhC
Confidence 874
No 2
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=1.4e-40 Score=265.81 Aligned_cols=209 Identities=37% Similarity=0.658 Sum_probs=196.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|.|+|+|+|||||||+|+.|++.+++.++++++++++.....++.|..+.+++..|..+|++.+..++.+++....+..|
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 46899999999999999999999999999999999999998999999999999999999999999999999987777789
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
|||||||++..|+..|.+.+ .. ..+|+|++|++++.+|+.+|+.|+.||+.||..|+||..++.|+.|+.++..|
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~----~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R 155 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFL----PN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQR 155 (211)
T ss_pred EEEECCCCCHHHHHHHHHhc----CC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeecc
Confidence 99999999999999887643 12 36788999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
.+|..+.+++|+..|+....++.++|...+.++.|||++++++|++.|.+.|++
T Consensus 156 ~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 156 KDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999888999999999999999999998863
No 3
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=2.3e-40 Score=266.95 Aligned_cols=213 Identities=53% Similarity=0.902 Sum_probs=203.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|.|+|||||||+|+.|+++||+.++++++++++.+...++.|..++..+..|..++++.+..++.+.+....+.+|
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 47999999999999999999999999999999999999998899999999999999999999999999999987776679
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
|||||||++..|+..|.+.+...+..++.+|+|++|++++.+|+.+|..|+.||+.||+.++||+.++.|+.|++++..|
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 99999999999999999888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+++.+.+++|+..|+..+.++.+||...+.++.|||+.++++|++.|...|+
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999988889999999999999999999875
No 4
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.4e-40 Score=267.91 Aligned_cols=209 Identities=32% Similarity=0.605 Sum_probs=192.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC--
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-- 107 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 107 (246)
.+++.|+|.|||||||||+|+.|++.+|+.|+++++++|+++...+++|..++.++.+|..+|++++..++.+++...
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~ 106 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE 106 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence 355789999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccccc-------------CC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK-------------FA 174 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~-------------~~ 174 (246)
....||||||||++..|++.|+.. ..++.+|+|++|++++.+|+.+|+.|+.||+.||.. ++
T Consensus 107 ~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~ 181 (261)
T PLN02459 107 EGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVM 181 (261)
T ss_pred cCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccC
Confidence 345899999999999999988764 358999999999999999999999999999999986 36
Q ss_pred CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 175 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 175 pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
||..+ ++.|+.++..|.+|.++.+++|++.|+....++.++|.+.+.++.||+++++++|++.|..+|.
T Consensus 182 ~p~~~--~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~ 250 (261)
T PLN02459 182 PPLLP--PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALN 250 (261)
T ss_pred CCCCC--CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhc
Confidence 66544 2467889999999999999999999999999999999999999999999999999999999874
No 5
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3e-40 Score=264.41 Aligned_cols=212 Identities=34% Similarity=0.570 Sum_probs=192.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|.|+|||||||+|+.|++.|++.+++.++++++.+..++++|..+++++.+|..+|++.+..++.+++.... .+|
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence 4699999999999999999999999999999999999998899999999999999999999999999999998776 889
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccc-cCCCCCCCC-CCCCCCCccc
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT-KFAPPKVPG-VDDVTGEPLI 190 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~-~~~pp~~~~-~~~~~~~~~~ 190 (246)
|||||||++..|++.|...+...+..|+.+|+|++|++++.+|+.+|+.|+.||..||. .+.||..++ .|+.|+..+.
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~ 159 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELS 159 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccc
Confidence 99999999999999999888888889999999999999999999999999998765555 455555444 8999999999
Q ss_pred cCCCCc-HHHHHHHHHHHHHh---cHHHHHHHhh-----cCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 191 QRKDDT-AAVLKSRLEAFHKQ---TEPVIDYYSK-----KGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 191 ~r~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+|.+|. .+.+.+|++.|+++ ..++.+||.+ .+.++.|||++++++|++.|.+.|+
T Consensus 160 ~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~ 223 (223)
T PRK14529 160 TRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS 223 (223)
T ss_pred cCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 999996 78999999999997 4578889985 6789999999999999999998874
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.4e-39 Score=260.13 Aligned_cols=209 Identities=55% Similarity=0.915 Sum_probs=194.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCcc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKG 112 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~g 112 (246)
+|+|.|+|||||||+|+.|++++|+.++++++++++.+...++.|..+..++..|..++++.+..++..++.... ...+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 389999999999999999999999999999999999998889999999999999999999999999999998743 3679
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
|||||||++..|+..|.+.+.. .++.+|+|++|++++.+|+.+|+.|+.||+.||..++||...+.|+.+++++..|
T Consensus 81 ~ilDGfPrt~~Qa~~l~~~~~~---~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R 157 (210)
T TIGR01351 81 FILDGFPRTLSQAEALDALLKE---KIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQR 157 (210)
T ss_pred EEEeCCCCCHHHHHHHHHHhcc---CCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccC
Confidence 9999999999999988876421 5899999999999999999999999999999999999998888888889999999
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+|+.+.+++|+..|+....++.+||...+.++.|||++++++|++.|.+.|.
T Consensus 158 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 210 (210)
T TIGR01351 158 EDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210 (210)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence 99999999999999999999999999988899999999999999999998763
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=6.2e-38 Score=253.11 Aligned_cols=210 Identities=29% Similarity=0.569 Sum_probs=190.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC--C
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK--P 107 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~ 107 (246)
..+++|+|+|||||||||+|+.|++.||+++++++++++++....+.+|..+++++..|..+|++.+..++.+.+.. .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999999988899999999999999999999999999999987 4
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccC-------CCCC-CC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF-------APPK-VP 179 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~-------~pp~-~~ 179 (246)
....|||+||||++..|+..|.+. ..++++|+|+++.+++.+|+.+|+.|+.||+.||..+ .||. ++
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~ 158 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPP 158 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCC
Confidence 456899999999999999987654 4789999999999999999999999999999999973 3443 35
Q ss_pred CCCCCCCC--ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCc-EEEE---eCCCChhHHHHHHHHHh
Q 025937 180 GVDDVTGE--PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI-VAQL---HAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 180 ~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~~ev~~~i~~~l 244 (246)
+.|+.|+. ++..|.+|+.+.+.+|++.|+.+..++.++|.+.+. ++.+ |+++++++|++.|.+.|
T Consensus 159 ~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 159 ADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 68888884 788999999999999999999999999999999898 8888 79999999999998764
No 8
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=2.3e-36 Score=243.65 Aligned_cols=205 Identities=40% Similarity=0.730 Sum_probs=185.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHH-----HccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (246)
.+.|+|+|+|||||||+|+.|++++|+++++++++++... ...+..+. ....+..|..++++....++...+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3589999999999999999999999999999999999876 22344554 56778899999999988888877643
Q ss_pred CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCC
Q 025937 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 186 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~ 186 (246)
..+||+||||++..+++.|... ..++.+|+|++|.+++.+|+.+|+.++.||+.||..+.||+.++.|+.|+
T Consensus 82 ---~~~~IldG~pr~~~q~~~l~~~-----~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~ 153 (215)
T PRK14530 82 ---ADGFVLDGYPRNLEQAEYLESI-----TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECG 153 (215)
T ss_pred ---CCCEEEcCCCCCHHHHHHHHHh-----cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccC
Confidence 3589999999999998877654 35899999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 187 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 187 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.++..|.+++.+.+++|+..|+..+.++.++|...+.++.|||++++++|++.|...|+
T Consensus 154 ~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 154 GELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988889999999999999999999875
No 9
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=235.30 Aligned_cols=212 Identities=52% Similarity=0.921 Sum_probs=199.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
..++..++++|+||+||+|+|.++++.|++.|+++++++|..+.+.+++|..+++++..|+.++++++..++...+....
T Consensus 12 ~~~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~ 91 (235)
T KOG3078|consen 12 EKKGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR 91 (235)
T ss_pred cccceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999998777787777
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
+++||++||||++..++..+. ..+..+|.+|.|++|++.+.+|+.+|++|+.+|+.||..|+||...+.++++++.
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgep 167 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELL----DRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEP 167 (235)
T ss_pred cccccccCCCCcchHHHHHHH----HccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccCh
Confidence 889999999999999887633 3467899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
|++|.+|..+.+..|+..|+....++.+||.+.+.+..+++.. .++||..|...|+
T Consensus 168 L~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~ 223 (235)
T KOG3078|consen 168 LIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLS 223 (235)
T ss_pred hhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 8999999988875
No 10
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=2.8e-34 Score=240.99 Aligned_cols=192 Identities=45% Similarity=0.743 Sum_probs=173.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|+|||||||||+|+.|++.||++|++++++++..+...++.|..+.+++..|.++|++.+..++.+++....+.+|
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
|||||||++..|++.|+.++...+..||++|+|++|++++++|+.+|..+... ++ ...|
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-------------------rg--~~~R 139 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-------------------RG--EEVR 139 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------cC--CccC
Confidence 99999999999999999888878889999999999999999999988642110 01 1246
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+++.+.+++|+..|+....++.++|.+.+.++.||++.++++|++.|...|.
T Consensus 140 ~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~ 192 (333)
T PRK13808 140 ADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLA 192 (333)
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999987889999999999999999998874
No 11
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=215.75 Aligned_cols=187 Identities=34% Similarity=0.595 Sum_probs=172.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc-cCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (246)
...+++|++.|+|||||-|+|..++++||+.|+|+++++|+.... +++.|..+++++++|..+|.+....+++.++...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 466789999999999999999999999999999999999999997 8999999999999999999999999999999988
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
...++|+|||||++.+|+..|++.+. ..++++++++|+.+++.+|+..|..-
T Consensus 85 ~~~~~fLIDGyPR~~~q~~~fe~~i~---~~~~fvl~fdc~ee~~l~Rll~R~q~------------------------- 136 (195)
T KOG3079|consen 85 GDSNGFLIDGYPRNVDQLVEFERKIQ---GDPDFVLFFDCPEETMLKRLLHRGQS------------------------- 136 (195)
T ss_pred CCCCeEEecCCCCChHHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHhhccc-------------------------
Confidence 77778999999999999999998753 36899999999999999999988521
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
-.|.+|+.+.++.|+..|.....++.++|.+.++++.||++.++++|+..+.+.+.
T Consensus 137 --~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 137 --NSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred --CCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 12678999999999999999999999999999999999999999999999988775
No 12
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=2.4e-33 Score=220.93 Aligned_cols=185 Identities=43% Similarity=0.769 Sum_probs=171.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
+.|+|.|+|||||||+|+.|++.+|+++++++++++..+..++++|..+..++..|..+++..+..++.+++....+.+|
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
|||||||++..|++.|.+.+...+..+|.+|+|++|++++.+|+.+|..+ ..|
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~---------------------------~gr 134 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI---------------------------EGR 134 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc---------------------------cCC
Confidence 99999999999999999888777788999999999999999999998632 135
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.+++.+.+.+|+..|+....++.++|...+.++.|||++++++|+..|.+.+
T Consensus 135 ~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 135 ADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 6788999999999999999999999999999999999999999999998754
No 13
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=217.93 Aligned_cols=186 Identities=41% Similarity=0.717 Sum_probs=170.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|.|+|.|+|||||||+|+.|++++|+.++++++++++.+..+++.|..+++.+..|..++++.+..++...+....++.|
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 46999999999999999999999999999999999999988899999999999999999999999999999987777889
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
||+||||++..|++.+.+.+...+..||.+|+|++|++++.+|+.+|..+ ..|
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~---------------------------~~r 133 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE---------------------------QGR 133 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc---------------------------CCC
Confidence 99999999999999999888888889999999999999999999988521 125
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
++++.+.+.+|+..|+....++.++|.+.+.++.||++.++++|++.|.+.|+
T Consensus 134 ~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 134 PDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 67788899999999999999999999887789999999999999999998874
No 14
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.2e-32 Score=216.58 Aligned_cols=181 Identities=42% Similarity=0.737 Sum_probs=166.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (246)
+++|+|+|+|||||||+|+.|++++|+.++++++++++.+...+++|..++.++..|..++++.+..++.+.+... ...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~ 80 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSG 80 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCC
Confidence 4689999999999999999999999999999999999999989999999999999999999999999888887654 357
Q ss_pred ceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcccc
Q 025937 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 191 (246)
Q Consensus 112 g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~ 191 (246)
||||||||++..|+..|++.+...+..++.+|+|++|++++.+|+.+|.
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~------------------------------- 129 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG------------------------------- 129 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC-------------------------------
Confidence 8999999999999999998888888889999999999999999999884
Q ss_pred CCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 192 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 192 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
|.+++.+.+..|+..|+....++.++|...+.++.||+++++++|+..|.+.|
T Consensus 130 r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 130 RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 35677889999999999999999999998889999999999999999998876
No 15
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=4.3e-32 Score=215.39 Aligned_cols=194 Identities=54% Similarity=0.916 Sum_probs=174.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcce
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~ 113 (246)
+|+|+|+|||||||+|+.|++++|+.++++++++++.+...++.+..+..++..|..++++.+..++...+.......+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 48999999999999999999999999999999999998888899999999999999999999999999998776556899
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025937 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRK 193 (246)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~ 193 (246)
|+||||++..++..|.+.+.. ...++++|+|++|++++.+|+.+|..++.||..||. +.|..++.++..|.
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l~~r~ 151 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRS 151 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCccccCC
Confidence 999999999999988876532 236889999999999999999999999999999998 22334667788899
Q ss_pred CCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHH
Q 025937 194 DDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 236 (246)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev 236 (246)
++..+.+++|+..|+..+.++.++|.+.+.++.||++.++++|
T Consensus 152 dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 152 DDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999999999999998899999999998864
No 16
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.7e-32 Score=240.54 Aligned_cols=200 Identities=37% Similarity=0.674 Sum_probs=182.3
Q ss_pred EEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCcceE
Q 025937 36 ILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFI 114 (246)
Q Consensus 36 ~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~g~i 114 (246)
+|+|+|||||||+|+.|+++|++.|++++++++..+..++++|..+++++.+|..++++.+..++.+++.... ..+|||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987654 357999
Q ss_pred ecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCC
Q 025937 115 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 194 (246)
Q Consensus 115 id~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~ 194 (246)
|||||++..|++.|.. .+..||++|+|+++++++.+|+.+|+.|+.||..||..+.||..+.. +.++..|.+
T Consensus 81 LDGfPRt~~Qa~~Le~----~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~----~~rL~~R~D 152 (505)
T PLN02842 81 LDGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEI----KARLITRPD 152 (505)
T ss_pred EeCCCCcHHHHHHHHh----cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCcccc----ccccccCCC
Confidence 9999999999887654 35789999999999999999999999999999999999999865443 467889999
Q ss_pred CcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 195 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
|+.+.+++|++.|+....++.++|.. .++.||++.++++|++.|.+.|.
T Consensus 153 D~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~ 201 (505)
T PLN02842 153 DTEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLS 201 (505)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999964 68899999999999999998874
No 17
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=2.1e-31 Score=210.98 Aligned_cols=188 Identities=37% Similarity=0.623 Sum_probs=170.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
.+.+++|+|.|+|||||||+|+.|++++|+.+++.+++++.....+++++..+...+..+..++++.+..++.+.+....
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999999999888888999999999999999999999999998887654
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
+ .+||+||||++..|+..+...+...+..++.+|+|++|++++.+|+.+|...
T Consensus 83 ~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-------------------------- 135 (191)
T PRK14527 83 P-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-------------------------- 135 (191)
T ss_pred C-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc--------------------------
Confidence 3 5899999999999999998888888888999999999999999999998531
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
..|.+++.+.+++|++.|+....++.++|.+.+.++.|||++++++|++.|...|
T Consensus 136 -~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 136 -EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 1356778899999999999999999999998889999999999999999998876
No 18
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=5.3e-31 Score=207.56 Aligned_cols=182 Identities=45% Similarity=0.805 Sum_probs=167.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|.|+|||||||+|+.|++.+|+++++.++++++.+...++.|..+...+..|..++++.+..++.+++....+..|
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 57999999999999999999999999999999999999988899999999999999999999999999999887766789
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
||+||||++..|+..+.+.+...+..|+++|+|++|++++.+|+..|. +
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~-------------------------------~ 130 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG-------------------------------R 130 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC-------------------------------C
Confidence 999999999999998988877777889999999999999999999883 2
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.++..+.+++|+..|+....++.++|...+.++.|||++++++|++.|.+.|.
T Consensus 131 ~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 131 KDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 35677899999999999999999999887789999999999999999998774
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.98 E-value=2.6e-30 Score=203.44 Aligned_cols=182 Identities=31% Similarity=0.559 Sum_probs=161.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcce
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~ 113 (246)
+|+|+|+|||||||+|+.|++++|+.++++++++++.+...++.|..++.++.+|..++++.+..++...+.... +++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence 489999999999999999999999999999999999998888899999999999999999999999998887655 7899
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025937 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRK 193 (246)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~ 193 (246)
||||||++..++..|.+.+. .+..|+.+|+|++|++++.+|+..|... ..+.
T Consensus 80 vlDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l~~~~~~~~~Rl~~R~~~---------------------------~~r~ 131 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLMD-NKVNFKFVLFFDCPEEVMIKRLLKRGQS---------------------------SGRV 131 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHhcCCcc---------------------------CCCC
Confidence 99999999999998887653 3457999999999999999999988531 1234
Q ss_pred CCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 194 DDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
+++.+.+++|+..|.....++.++|...+.++.||+++++++|++.|.+.|
T Consensus 132 dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 132 DDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 567899999999999999999999987778899999999999999999876
No 20
>PLN02200 adenylate kinase family protein
Probab=99.98 E-value=2.7e-30 Score=209.87 Aligned_cols=183 Identities=32% Similarity=0.560 Sum_probs=163.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
+.+++|+|.|+|||||||+|+.|++++|+.|++.++++++.+...++.+..+...+..|..++++.+..++.+.+....
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~- 119 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD- 119 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 4667899999999999999999999999999999999999998889999999999999999999999888888886543
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
.++|||||+|++..|+..+.+.+ +..||.+|+|+++++++.+|+.+|..
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~Ld~~~e~~~~Rl~~R~~---------------------------- 168 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFFDCPEEEMVKRVLNRNQ---------------------------- 168 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEEECCHHHHHHHHHcCcC----------------------------
Confidence 47899999999999998887654 35799999999999999999998852
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 190 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 190 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.|.+++.+.+++|++.|+....++.++|...+.++.|||++++++|++.|.+.+.
T Consensus 169 -~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~ 223 (234)
T PLN02200 169 -GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFA 223 (234)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 2345678999999999999999999999987889999999999999999998764
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=196.48 Aligned_cols=177 Identities=42% Similarity=0.784 Sum_probs=166.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|.|+|||||||+|+.|+++++++|+|.+++++......+++|..++.++..|..++++....++..++....+..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999988766669
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
+|+||||++..+++.+.+.+..+|..++.++.++++.+.+..|+.+|.. |
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~------------------------------r 130 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV------------------------------R 130 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc------------------------------c
Confidence 9999999999999999999999889999999999999999999999852 5
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.++..+.+.+|+..|+....++..+|. +.||+.++++++++.|.+.+
T Consensus 131 ~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 131 EDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 688999999999999999999999986 78999999999999998876
No 22
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=1e-28 Score=188.53 Aligned_cols=150 Identities=45% Similarity=0.862 Sum_probs=135.5
Q ss_pred EECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcceEec
Q 025937 37 LVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 116 (246)
Q Consensus 37 l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~iid 116 (246)
|.|||||||||+|+.|+++||+.||++++++++.+...++.|..+++++.+|..+|++++..++..++....+.+|||||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999887667999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCc
Q 025937 117 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT 196 (246)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~ 196 (246)
|||++..|+..|.+.+...+..|+.+|+|++|++.+.+|+.+ ++
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------d~ 124 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------DN 124 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------GS
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------CC
Confidence 999999999999987777789999999999999999999885 25
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHhhcC
Q 025937 197 AAVLKSRLEAFHKQTEPVIDYYSKKG 222 (246)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (246)
.+.+++|++.|+....++.++|.+.+
T Consensus 125 ~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 125 EEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68899999999999999999998754
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=6.6e-27 Score=184.65 Aligned_cols=183 Identities=37% Similarity=0.579 Sum_probs=156.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-CCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 110 (246)
.++|+|.|+|||||||+|+.|++.+|+.+++.++++++.+...++.+..+...+..+..++...+...+...+.. ...+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 468999999999999999999999999999999999998777777888888889999899988888877777654 3456
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 190 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~ 190 (246)
.+||+||+|++..+...+... ...|+.+|+|++|++.+.+|+.+|... .
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~----~~~~~~vi~l~~~~~~~~~Rl~~R~~~---------------------------~ 131 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERR----IGPPTLVLYFDCSEDTMVKRLLKRAET---------------------------S 131 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHc----CCCCCEEEEEECCHHHHHHHHHccccc---------------------------C
Confidence 799999999999888866543 256899999999999999999987420 1
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 191 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 191 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.|.+++.+.+.+|+..|+....++.++|...+.++.||++.+++++++.|...|+
T Consensus 132 ~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 132 GRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 2456778899999999999999998888877788999999999999999998875
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.76 E-value=1.2e-17 Score=134.27 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=114.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceee--hHHHHHHHHHccCchHHHHHHHHHcC--CCcCHHHHHHHH--HHH--
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLA--TGDMLRAAVAAKTPLGIKAKEAMDKG--ELVSDDLVVGII--DEA-- 103 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~--~~~l~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l--~~~-- 103 (246)
+.+|+|.|++||||||+++.|++.+.....- -...+....+.++++|+.+++++... ...++.....++ ..+
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999988422110 00111111234678899999988632 233333322221 111
Q ss_pred -----HcCCCCCcceEe-----------cCCCCCHH--HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 104 -----MKKPSCQKGFIL-----------DGFPRTEV--QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 104 -----l~~~~~~~g~ii-----------d~~~~~~~--~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
+........+|| +|+|+... ....+...+ ..+..||++|+|++|++++.+|+.+|.
T Consensus 83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~-~~~~~pd~~i~ld~~~~~~~~R~~~R~----- 156 (212)
T PRK13974 83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIA-TQGLSPDLTFFLEISVEESIRRRKNRK----- 156 (212)
T ss_pred HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcc-----
Confidence 111111122555 45555433 244444332 235689999999999999999988763
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
++ .++.+...|+....+..++|.+.+.++.||+++++++|+++|.++|.
T Consensus 157 ----------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~ 205 (212)
T PRK13974 157 ----------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLL 205 (212)
T ss_pred ----------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 11 24455677777788888888877889999999999999999988774
No 25
>PRK01184 hypothetical protein; Provisional
Probab=99.75 E-value=6.8e-16 Score=121.43 Aligned_cols=170 Identities=20% Similarity=0.206 Sum_probs=110.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc-cC-----chHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KT-----PLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~-~~-----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (246)
++|+|+|+|||||||+++ +++.+|++++++++++++.+.. +. .+|......... +....+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh
Confidence 589999999999999987 7788999999999999997642 21 244444433321 2223333333334433
Q ss_pred CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCC
Q 025937 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 186 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~ 186 (246)
.....+|+|++ +...+.+.+.+.+ ..+..+|++++|+++..+|+..|...
T Consensus 78 -~~~~~vvidg~-r~~~e~~~~~~~~----~~~~~~i~v~~~~~~~~~Rl~~R~~~------------------------ 127 (184)
T PRK01184 78 -KGDEVVVIDGV-RGDAEVEYFRKEF----PEDFILIAIHAPPEVRFERLKKRGRS------------------------ 127 (184)
T ss_pred -cCCCcEEEeCC-CCHHHHHHHHHhC----CcccEEEEEECCHHHHHHHHHHcCCC------------------------
Confidence 23467999998 6777777665543 23458999999999999999887410
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 187 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 187 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+..+.+.+..+...... ....+.+.. .. +.|+++++.+++..+|.+.++
T Consensus 128 -----~d~~~~~~~~~r~~~q~~--~~~~~~~~~-ad-~vI~N~~~~~~l~~~v~~~~~ 177 (184)
T PRK01184 128 -----DDPKSWEELEERDERELS--WGIGEVIAL-AD-YMIVNDSTLEEFRARVRKLLE 177 (184)
T ss_pred -----CChhhHHHHHHHHHHHhc--cCHHHHHHh-cC-EEEeCCCCHHHHHHHHHHHHH
Confidence 011235667766654322 112223322 22 345677899999999988754
No 26
>PRK03839 putative kinase; Provisional
Probab=99.74 E-value=1.8e-16 Score=124.33 Aligned_cols=151 Identities=18% Similarity=0.280 Sum_probs=95.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|+|+|||||||+++.|+++++++++++++++++. .++...... + +...+.+...+.....+.+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~~---~-----~~~~~~l~~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDDE---M-----EIDFDKLAYFIEEEFKEKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCChh---h-----hcCHHHHHHHHHHhccCCC
Confidence 47999999999999999999999999999999988652 111111000 0 1112223223222223456
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
+|+||+... . ..++.+|+|+++++++.+|+..|... +
T Consensus 68 vIidG~~~~---------l-----~~~~~vi~L~~~~~~~~~Rl~~R~~~-----------------------------~ 104 (180)
T PRK03839 68 VVLDGHLSH---------L-----LPVDYVIVLRAHPKIIKERLKERGYS-----------------------------K 104 (180)
T ss_pred EEEEecccc---------c-----cCCCEEEEEECCHHHHHHHHHHcCCC-----------------------------H
Confidence 999996432 1 35789999999999999999877410 0
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
+. ..+....++ .. ..+.+.+.....++.||++ .+++++++.|.+.+.
T Consensus 105 ~~-~~~~~~~~~---~~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 105 KK-ILENVEAEL---VD--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred HH-HHHHHHHHH---HH--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 00 001111111 11 1123444444567889996 699999999998775
No 27
>PRK13973 thymidylate kinase; Provisional
Probab=99.72 E-value=8e-16 Score=123.76 Aligned_cols=177 Identities=21% Similarity=0.249 Sum_probs=103.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc---Ccceeeh--------HHHHHHHHHcc--CchHHHHHHHHHcCCCcCHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY---CLCHLAT--------GDMLRAAVAAK--TPLGIKAKEAMDKGELVSDDLVVG 98 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~--------~~l~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~ 98 (246)
+++|+|.|++||||||+++.|++.+ |..++.+ ++.+|+.+... ...+......+-.. ...+.+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~ 80 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE 80 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence 5799999999999999999999999 7776655 55555544321 11222222121111 00112223
Q ss_pred HHHHHHcCCCCCcceEecCCC----------CC--HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 99 IIDEAMKKPSCQKGFILDGFP----------RT--EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid~~~----------~~--~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
.+...+.. +..+|.|+|. .. ..+...+...+. .+..||++|+|++|++++.+|+.+|......
T Consensus 81 ~i~~~l~~---g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~-~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~- 155 (213)
T PRK13973 81 VIRPALAR---GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAI-NGVMPDLTLILDIPAEVGLERAAKRRGSDTP- 155 (213)
T ss_pred HHHHHHHC---CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhccCCCcc-
Confidence 34444432 2234445543 11 123333333221 2368999999999999999999888521100
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCC-CcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKD-DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+.+ +..+.++++...|.... +++. +.++.||+++++++|+++|...+.
T Consensus 156 ------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~ 205 (213)
T PRK13973 156 ------------------------DRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDATASPEAVAAEIWAAVD 205 (213)
T ss_pred ------------------------CchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHH
Confidence 0111 23344555555555432 2222 368889999999999999988764
No 28
>PRK08356 hypothetical protein; Provisional
Probab=99.68 E-value=2e-15 Score=119.93 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=80.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc----cC---chHHH----HHHHHHcCCCcCH----HH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA----KT---PLGIK----AKEAMDKGELVSD----DL 95 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~----~~---~~g~~----~~~~~~~~~~~~~----~~ 95 (246)
+.++|+|+|||||||||+|+.|+ .+|+.++++++.++..... .+ ..+.. ...++..+..+++ ..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 45789999999999999999996 4899999998855432221 11 11111 1233444444442 44
Q ss_pred HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 96 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 96 ~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+.+...+.+.. ...+++||+ ++..+...|.+. ...+|++++|.+++.+|+.+|.
T Consensus 83 ~~~~~~~~~~~---~~~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 83 LIRLAVDKKRN---CKNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred HHHHHHHHhcc---CCeEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHhcC
Confidence 55555555522 235999999 999998876542 1378999999999999998875
No 29
>PRK06217 hypothetical protein; Validated
Probab=99.68 E-value=1.9e-15 Score=118.84 Aligned_cols=170 Identities=18% Similarity=0.258 Sum_probs=104.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|+|+|||||||+++.|++.+|+++++.|+++... .+...+. ..+.+.....+...+. ...+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFTT----------KRPPEERLRLLLEDLR---PREG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCccc----------cCCHHHHHHHHHHHHh---cCCC
Confidence 57999999999999999999999999999998877531 1111111 1223333344444432 2457
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
|||+|++... ... .. ..+|.+|+|++|.+++..|+.+|...+. |+ |...+-+
T Consensus 67 ~vi~G~~~~~--~~~---~~----~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~-~~--------~~~~~~~---------- 118 (183)
T PRK06217 67 WVLSGSALGW--GDP---LE----PLFDLVVFLTIPPELRLERLRLREFQRY-GN--------RILPGGD---------- 118 (183)
T ss_pred EEEEccHHHH--HHH---HH----hhCCEEEEEECCHHHHHHHHHcCccccc-Cc--------ccCCCCC----------
Confidence 9999987532 111 11 3478999999999999999999864321 10 0000000
Q ss_pred CCCcHHHHHHHHHHHHH------hcHHHHHHHhhc-CcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHK------QTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.......+.++...|.. .......++... ..++.+++..+++++.+.|...|.
T Consensus 119 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~ 178 (183)
T PRK06217 119 MHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLA 178 (183)
T ss_pred HHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHh
Confidence 00111234444434432 222223343332 467788999999999999998874
No 30
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.66 E-value=4.8e-15 Score=117.71 Aligned_cols=178 Identities=24% Similarity=0.287 Sum_probs=104.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-CCcCHHHHH--------HHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-ELVSDDLVV--------GIID 101 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~--------~~l~ 101 (246)
++++|+|.|+.||||||+++.|++.+.-..+++ -+.+ -+.++++|..+++.+.++ ..+.+.... .-+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v-~~tr--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV-VLTR--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEe--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999984332221 1111 134588899999988876 334333221 1112
Q ss_pred HHHcC-CCCCcceEecCCCCCHHHH------------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcc
Q 025937 102 EAMKK-PSCQKGFILDGFPRTEVQA------------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT 168 (246)
Q Consensus 102 ~~l~~-~~~~~g~iid~~~~~~~~~------------~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~ 168 (246)
+.+.. ...+..+|.|.|..+.... ..+.+.... +..||++++|++++++..+|+.+|....
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~-~~~PD~ti~Ldv~~e~al~R~~~r~~~~----- 152 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPG-GLKPDLTLYLDVPPEVALERIRKRGELR----- 152 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccC-CCCCCEEEEEeCCHHHHHHHHHhcCCcc-----
Confidence 22221 1223456667775443211 111122212 4589999999999999999999885310
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc-CcEEEEeCCCChhHHHHHHHHHhc
Q 025937 169 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 169 ~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+-+.....++++.. ....+..... ..+++||++.++++|.+.|...+.
T Consensus 153 ----------------------~r~E~~~~~f~~kvr------~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~ 202 (208)
T COG0125 153 ----------------------DRFEKEDDEFLEKVR------EGYLELAAKFPERIIVIDASRPLEEVHEEILKILK 202 (208)
T ss_pred ----------------------chhhhHHHHHHHHHH------HHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 000000001222221 1112222222 258899999999999999988774
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.66 E-value=1.1e-14 Score=112.76 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=70.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (246)
..|+|+|+|||||||+++.|++.+++.+++.|.++.+... ..+.+.+.. |.....+....++.+ +. ...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~---~~~ 71 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VA---EFE 71 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HH---hCC
Confidence 3699999999999999999999999999999988876432 222233321 221112222333332 22 124
Q ss_pred ceEe-cC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 112 GFIL-DG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 112 g~ii-d~--~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
++|+ +| .+........+.+ .+++|||++|.+.+.+|+..+
T Consensus 72 ~~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 72 DVVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred CEEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcC
Confidence 5667 33 3444555554432 358999999999999999753
No 32
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.66 E-value=5.5e-15 Score=112.74 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=71.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
.+.|+|+|++||||||+++.||+.++++++|+|.++.+... ..+.+.|.. |..-....-.+.+.+.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~---- 71 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEE---- 71 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence 46799999999999999999999999999999999988543 344444443 2111111222333332222
Q ss_pred cceEec-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 111 KGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 111 ~g~iid-~--~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
...||. | .....+....| .+.+ .+|||++|.+++++|+....
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l----~~~g----~vv~L~~~~e~l~~Rl~~~~ 116 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLL----KKRG----IVVYLDAPFETLYERLQRDR 116 (172)
T ss_pred CCeEEECCCccccCHHHHHHH----HhCC----eEEEEeCCHHHHHHHhcccc
Confidence 224443 2 22233344433 2222 89999999999999998543
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.65 E-value=3.8e-14 Score=105.74 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=73.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|.|.|+|||||||+++.||++||+++++.+.++|+......-.-..+.++-..+-.+ | ..+..+.........
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i-D----~~iD~rq~e~a~~~n 75 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI-D----KEIDRRQKELAKEGN 75 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh-h----HHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999986553222222222322222211 1 122222222222445
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+|++|.-. - +++. ..+|+-|||.+|.++..+|+..|.
T Consensus 76 vVlegrLA-----~---Wi~k---~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 76 VVLEGRLA-----G---WIVR---EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred eEEhhhhH-----H---HHhc---cccceEEEEeCcHHHHHHHHHHhc
Confidence 77776421 1 1221 457899999999999999999984
No 34
>PRK13975 thymidylate kinase; Provisional
Probab=99.64 E-value=3.4e-14 Score=112.80 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=94.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHH-----------HHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------GII 100 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~l 100 (246)
+++|+|.|++||||||+++.|+++++..+... +.++.+|..+++.+..+ ...+.... +.+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998532110 11223445555554433 22221111 111
Q ss_pred HHHHcCCCCCcceEecCCCCCHH--H------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccccc
Q 025937 101 DEAMKKPSCQKGFILDGFPRTEV--Q------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 101 ~~~l~~~~~~~g~iid~~~~~~~--~------~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
...+ ....+|.|++..... + ..++. .+......|+++|+|++|++++.+|+..|..
T Consensus 73 ~~~~----~~~~vi~DRy~~S~~a~~~~~g~~~~~~~-~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~----------- 136 (196)
T PRK13975 73 EEDL----KKRDVVCDRYVYSSIAYQSVQGIDEDFIY-SINRYAKKPDLVFLLDVDIEEALKRMETRDK----------- 136 (196)
T ss_pred HHHH----cCCEEEEECchhHHHHHhcccCCCHHHHH-HHHhCCCCCCEEEEEcCCHHHHHHHHhccCc-----------
Confidence 1111 124577787643210 0 01111 1112235799999999999999999988741
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHH-HHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSR-LEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
+......+..+ ...|..... ..++.....++.||++ .+++++++.|.+.|.
T Consensus 137 --------------------~~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~ 189 (196)
T PRK13975 137 --------------------EIFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIK 189 (196)
T ss_pred --------------------cccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 01111223333 333333222 2222222347889985 899999999988764
No 35
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.63 E-value=1.8e-14 Score=114.23 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=105.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-----CCcCHHHH-----------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~----------- 96 (246)
.+|+|+|++||||||+++.|++ +|+++++.|.+.++.+.++++....+.+.+..+ +.+....+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 999999999999998877777666666665432 22322111
Q ss_pred -------H----HHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 97 -------V----GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 97 -------~----~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
. +.+...+.... ...+++-..|...+ ......+|.+|++++|+++..+|+..|.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~-~~~~vv~e~pll~e---------~~~~~~~D~vi~V~a~~e~~~~Rl~~R~----- 146 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAE-SSPYVVLDIPLLFE---------NGLEKLVDRVLVVDAPPETQLERLMARD----- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-cCCEEEEEehHhhc---------CCchhhCCeEEEEECCHHHHHHHHHHcC-----
Confidence 1 11112222111 11333322332211 0111357999999999999999998873
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.+..|+..+.... +.... .. +.|+++++++++.+++...++
T Consensus 147 ----------------------------~~s~e~~~~ri~~Q~~~~----~~~~~-ad-~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 147 ----------------------------GLSEEEAEAIIASQMPRE----EKLAR-AD-DVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred ----------------------------CCCHHHHHHHHHHhCCHH----HHHHh-CC-EEEECCCCHHHHHHHHHHHHH
Confidence 335577777877543221 11111 12 567888999999999988775
No 36
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.63 E-value=5.1e-15 Score=125.22 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=107.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
+++|+|.|+|||||||+|+.|++++ ++.+++.|++ +..+......+.. .+...+...........+...+ ..+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l---~~g 75 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAAL---KSG 75 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHH---HcC
Confidence 4689999999999999999999999 8999999664 4433221111100 0000000000111122222222 234
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 190 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~ 190 (246)
..+|+|+++....+...+..++...+..+ .+|+|++|.+++.+|+.+|..+
T Consensus 76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~---------------------------- 126 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGER---------------------------- 126 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcC----------------------------
Confidence 67999999999888888887777666555 5799999999999999998421
Q ss_pred cCCCCcHHHHH---HHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhH
Q 025937 191 QRKDDTAAVLK---SRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 235 (246)
Q Consensus 191 ~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e 235 (246)
....+.++ ++++.|.....++...+.....++.+|.++++.+
T Consensus 127 ---~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 127 ---AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 12334444 7777777777777655554456677776666554
No 37
>PLN02924 thymidylate kinase
Probab=99.62 E-value=1.2e-14 Score=117.00 Aligned_cols=174 Identities=15% Similarity=0.118 Sum_probs=103.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHH-HHHHH----
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG-IIDEA---- 103 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~~~---- 103 (246)
++++++|+|.|++||||||+++.|++.+....+.+ .+.++ +...+..|..+++.+..+..+.+....- ....+
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999996554443 22222 2235778888888887654443332210 00011
Q ss_pred --HcC-CCCCcceEecCCCCCHH--HH------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccccc
Q 025937 104 --MKK-PSCQKGFILDGFPRTEV--QA------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 104 --l~~-~~~~~g~iid~~~~~~~--~~------~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
+.. ...+..+|.|.|..+.. +. +++. .+....+.||++|+|++|++++.+|...+. +.
T Consensus 91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~-~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~------~~---- 159 (220)
T PLN02924 91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCK-APEVGLPAPDLVLYLDISPEEAAERGGYGG------ER---- 159 (220)
T ss_pred HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccCc------cc----
Confidence 111 12345677788765321 11 1111 122334689999999999999999954211 00
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
-+. ..++.++...+... . . ..+..||++.++++|++.|.+.+.
T Consensus 160 ---------------------~E~-~~~~~rv~~~Y~~l---a----~-~~~~vIDa~~sieeV~~~I~~~I~ 202 (220)
T PLN02924 160 ---------------------YEK-LEFQKKVAKRFQTL---R----D-SSWKIIDASQSIEEVEKKIREVVL 202 (220)
T ss_pred ---------------------ccc-HHHHHHHHHHHHHH---h----h-cCEEEECCCCCHHHHHHHHHHHHH
Confidence 011 22333332222111 1 1 357788999999999999988764
No 38
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=1.1e-14 Score=115.34 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=105.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-----C-CcCHHHH----------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----E-LVSDDLV---------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~-~~~~~~~---------- 96 (246)
++|+|+|++||||||+++.|++.+|+++++.|++.++....+++.+..+.+.|... + .+....+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999998999999999999998888887777777766432 2 2221111
Q ss_pred ------------HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 97 ------------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 97 ------------~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
...+.+.+.... ...+++-..|...+. .....+|.+|++++|.++..+|+..|.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~-~~~~vv~e~pll~E~---------~~~~~~D~ii~V~a~~e~r~~Rl~~R~---- 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLK-SNPIVVLVIPLLFEA---------KLTDLCSEIWVVDCSPEQQLQRLIKRD---- 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEeHHhcCc---------chHhCCCEEEEEECCHHHHHHHHHHcC----
Confidence 111122222211 122333222211110 011357899999999999999998873
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
..+.+.+..|+... +. ..... .... ++|+++++.+++.+++.+.+
T Consensus 148 -----------------------------g~s~e~~~~ri~~Q---~~-~~~k~-~~aD-~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 148 -----------------------------GLTEEEAEARINAQ---WP-LEEKV-KLAD-VVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred -----------------------------CCCHHHHHHHHHhC---CC-HHHHH-hhCC-EEEECCCCHHHHHHHHHHHH
Confidence 23456677777642 21 11111 1122 36788899999999998876
Q ss_pred c
Q 025937 245 S 245 (246)
Q Consensus 245 ~ 245 (246)
+
T Consensus 193 ~ 193 (195)
T PRK14730 193 K 193 (195)
T ss_pred h
Confidence 3
No 39
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.61 E-value=8.2e-14 Score=108.26 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=65.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (246)
..|+|+|++||||||+++.||+.+|+++++.|.++..... ..+.+++.. |.....+...+++ ..+. ..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g------~~~~~~~~~~g~~~~~~~e~~~~-~~~~----~~ 71 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN------MTVAEIVEREGWAGFRARESAAL-EAVT----AP 71 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHH-HHhc----CC
Confidence 4689999999999999999999999999999887765321 111122211 1000001112222 1221 22
Q ss_pred ceEec-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 112 GFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 112 g~iid-~--~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+|+. | ++......+.+ . ..+++|||++|++++.+|+..|.
T Consensus 72 ~~vi~~ggg~vl~~~~~~~l----~----~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 72 STVIATGGGIILTEENRHFM----R----NNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred CeEEECCCCccCCHHHHHHH----H----hCCEEEEEECCHHHHHHHHcccc
Confidence 34443 3 22233333322 2 23589999999999999998763
No 40
>PRK13948 shikimate kinase; Provisional
Probab=99.59 E-value=8.8e-14 Score=108.71 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 107 (246)
.+++..|+|.|++||||||+++.|++.+|+.+++.|.++++... ..+.+.+.. |.....+.....+...+.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~-- 78 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTR-- 78 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHh--
Confidence 45667999999999999999999999999999999888876432 333344432 221112222233333221
Q ss_pred CCCcceEec---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 108 SCQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 108 ~~~~g~iid---~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
..+.||. |.+........+ .+. ..+|||+++++++.+|+..
T Consensus 79 --~~~~VIa~GgG~v~~~~n~~~l----~~~----g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 79 --LDYAVISLGGGTFMHEENRRKL----LSR----GPVVVLWASPETIYERTRP 122 (182)
T ss_pred --cCCeEEECCCcEEcCHHHHHHH----HcC----CeEEEEECCHHHHHHHhcC
Confidence 2334454 222333333322 222 3789999999999999943
No 41
>PRK00625 shikimate kinase; Provisional
Probab=99.58 E-value=7.9e-14 Score=108.21 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=68.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
+.|+|+|+|||||||+++.|++++|++++++|+++++..... ....+.+.+...+ .+.....-.+.+........
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l~~~~~ 75 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSLPVIPS 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHhccCCe
Confidence 479999999999999999999999999999999988744321 0112333333221 11111111112222222223
Q ss_pred eEecCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 113 FILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 113 ~iid~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+|..|. +......+. +.. -..+|||++|.+++.+|+..|.
T Consensus 76 VIs~GGg~~~~~e~~~~----l~~----~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 76 IVALGGGTLMIEPSYAH----IRN----RGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred EEECCCCccCCHHHHHH----Hhc----CCEEEEEECCHHHHHHHHhcCC
Confidence 333332 222222222 221 2479999999999999999874
No 42
>PRK04040 adenylate kinase; Provisional
Probab=99.58 E-value=1.7e-13 Score=107.95 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=102.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc--CcceeehHHHHHHHHHccCc-hHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTP-LGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~--~~~~i~~~~l~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
+++|+|+|+|||||||+++.|++++ ++.+++.++++......... ... +.+..-.......+..+....+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~---d~~r~l~~~~~~~~~~~a~~~i~~~~ 78 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHR---DEMRKLPPEEQKELQREAAERIAEMA 78 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCH---HHHhhCChhhhHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999 89999999988765443221 111 11111111111112223333333333
Q ss_pred CCcceEecCCCCCHHHHH---HH-HHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCC
Q 025937 109 CQKGFILDGFPRTEVQAQ---KL-DEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 184 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~---~l-~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~ 184 (246)
....+|+|++.......- .+ .+.+.. ..|+.+|+|.++++++.+|......
T Consensus 79 ~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~--l~pd~ii~l~a~p~~i~~Rrl~d~~----------------------- 133 (188)
T PRK04040 79 GEGPVIVDTHATIKTPAGYLPGLPEWVLEE--LNPDVIVLIEADPDEILMRRLRDET----------------------- 133 (188)
T ss_pred cCCCEEEeeeeeeccCCCCcCCCCHHHHhh--cCCCEEEEEeCCHHHHHHHHhcccc-----------------------
Confidence 334588888542111000 00 012222 4789999999999999998774200
Q ss_pred CCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHh---hcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 185 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS---KKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 185 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
-.|+..+.+.++.+++...... .+|. ....++.+|.++..++.+++|.++|.
T Consensus 134 -----R~R~~es~e~I~~~~~~a~~~a----~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 134 -----RRRDVETEEDIEEHQEMNRAAA----MAYAVLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHH----HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 0134556677776665533322 2232 12245566666569999999988763
No 43
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.58 E-value=5.7e-14 Score=112.22 Aligned_cols=175 Identities=20% Similarity=0.197 Sum_probs=96.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCc---ceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHH-HH-------H
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDL-VV-------G 98 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~---~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~-~~-------~ 98 (246)
++++|+|.|++||||||+++.|++.++. .++.. .. +.++..|..++..+.. ........ .. .
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999998732 21111 10 1134456666666653 11122211 11 1
Q ss_pred HHHHHHcC-CCCCcceEecCCCCCH------------HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 99 IIDEAMKK-PSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 99 ~l~~~l~~-~~~~~g~iid~~~~~~------------~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
.+...+.. ...+..+|+|.++... .....+...+. ....||++|+|++|++++.+|+..|...
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~pd~~i~l~~~~~~~~~Rl~~R~~~--- 151 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFAL-GGFRPDLTLYLDVPPEVGLARIRARGEL--- 151 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence 11111111 1234567777654331 12222222222 2267999999999999999999988510
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+ +.......+..++..++. .+.+.+ ...++.||++.++++++++|.+.+.
T Consensus 152 ~-------------------------~~~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~ 201 (205)
T PRK00698 152 D-------------------------RIEQEGLDFFERVREGYL---ELAEKE--PERIVVIDASQSLEEVHEDILAVIK 201 (205)
T ss_pred c-------------------------hhhhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 000111233333332221 111111 2357889999999999999988764
No 44
>PRK08233 hypothetical protein; Provisional
Probab=99.58 E-value=3.4e-14 Score=111.37 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=92.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcC-cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS- 108 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~-~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 108 (246)
++++|+|.|+|||||||+|+.|++.++ ...+..+.. +... ....+...+..+..+ .......+...+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 74 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFDN-----CPEDICKWIDKGANY-SEWVLTPLIKDIQELIA 74 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Eccc-----CchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence 357999999999999999999999996 333333221 1100 001122222223222 2222222222222111
Q ss_pred -CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 109 -CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 109 -~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
....+|+.++|....... +. ..+|++|+|++|.+++.+|+..|...
T Consensus 75 ~~~~~~vivd~~~~~~~~~-~~-------~~~d~~i~l~~~~~~~~~R~~~R~~~------------------------- 121 (182)
T PRK08233 75 KSNVDYIIVDYPFAYLNSE-MR-------QFIDVTIFIDTPLDIAMARRILRDFK------------------------- 121 (182)
T ss_pred CCCceEEEEeeehhhccHH-HH-------HHcCEEEEEcCCHHHHHHHHHHHHhh-------------------------
Confidence 122455655554322211 11 34689999999999999998776420
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHH-HHHHHhh--cCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEP-VIDYYSK--KGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+.+.+..++..|.....+ ..++... ....+.||++.++++++++|.+.|.
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 122 ------EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred ------hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 01112344455555543333 2222222 1234678999999999999998875
No 45
>PRK13947 shikimate kinase; Provisional
Probab=99.57 E-value=1.3e-13 Score=107.09 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=65.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
.|+|.|+|||||||+++.||+.+|+++++.|.++++.. |..+.+.+.. +.....+....++. .+. ....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~~~-~l~---~~~~ 72 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLLVK-KLA---RLKN 72 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHHHH-HHh---hcCC
Confidence 69999999999999999999999999999988876642 2222222222 21111111112222 221 1123
Q ss_pred eEec-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 113 FILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 113 ~iid-~--~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.++. | .+........ +.+. ..+|||+++++.+.+|+..|.
T Consensus 73 ~vi~~g~g~vl~~~~~~~----l~~~----~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 73 LVIATGGGVVLNPENVVQ----LRKN----GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred eEEECCCCCcCCHHHHHH----HHhC----CEEEEEECCHHHHHHHhcCCC
Confidence 3332 2 2222223222 2222 479999999999999998764
No 46
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.57 E-value=3.1e-13 Score=102.21 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=93.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|+|.||+||||+|+.|+ .+|+.+++..+++.+. .+.....+ ......+..+.+...+...+ ....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-----~~~~~~de-~r~s~~vD~d~~~~~le~~~----~~~~ 69 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-----GLYTEYDE-LRKSVIVDVDKLRKRLEELL----REGS 69 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-----CCeeccCC-ccceEEeeHHHHHHHHHHHh----ccCC
Confidence 589999999999999999999 8999999998877652 11111000 00011122222333333322 2345
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
.|+|++... + -+.+|++|+|.++++.+.+|+.+|+.
T Consensus 70 ~Ivd~H~~h---------l----~~~~dlVvVLR~~p~~L~~RLk~RGy------------------------------- 105 (180)
T COG1936 70 GIVDSHLSH---------L----LPDCDLVVVLRADPEVLYERLKGRGY------------------------------- 105 (180)
T ss_pred eEeechhhh---------c----CCCCCEEEEEcCCHHHHHHHHHHcCC-------------------------------
Confidence 788875321 2 13589999999999999999999953
Q ss_pred CCCcHHHHHHHHHHHH--HhcHHHHHHHhhcCcEEEEeC-CCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFH--KQTEPVIDYYSKKGIVAQLHA-EKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~-~~~~~ev~~~i~~~l~ 245 (246)
+++.+...+..-. .......+.+ ..++.||. +.+++++.+.|..++.
T Consensus 106 ---~~eKI~ENveAEi~~vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~ 155 (180)
T COG1936 106 ---SEEKILENVEAEILDVILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIG 155 (180)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHc
Confidence 2233333322111 1111122222 35778884 6999999999988774
No 47
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=8.2e-14 Score=102.45 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=101.3
Q ss_pred ECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHH---HHHHHHHHHcCC-CCCcce
Q 025937 38 VGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL---VVGIIDEAMKKP-SCQKGF 113 (246)
Q Consensus 38 ~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~-~~~~g~ 113 (246)
+|++||||||++..||+++|+.+++.|++-.. ...+.+..|..+.|+. ++..+..++... ..+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~----------aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP----------ANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCH----------HHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 59999999999999999999999999886543 3445678888888864 344444444432 333434
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025937 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRK 193 (246)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~ 193 (246)
||.......... ..+....+.. .+|||+.+.+++.+|+..|..| |.|+
T Consensus 71 vi~CSALKr~YR----D~LR~~~~~~-~Fv~L~g~~~~i~~Rm~~R~gH----------FM~~----------------- 118 (161)
T COG3265 71 VIACSALKRSYR----DLLREANPGL-RFVYLDGDFDLILERMKARKGH----------FMPA----------------- 118 (161)
T ss_pred EEecHHHHHHHH----HHHhccCCCe-EEEEecCCHHHHHHHHHhcccC----------CCCH-----------------
Confidence 443322222222 3444433343 6899999999999999999743 3443
Q ss_pred CCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 194 DDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+ ..+...++.--.+ ..++.||.+.+++++++.+.+.++
T Consensus 119 ----~ll-------~SQfa~LE~P~~d-e~vi~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 119 ----SLL-------DSQFATLEEPGAD-EDVLTIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred ----HHH-------HHHHHHhcCCCCC-CCEEEeeCCCCHHHHHHHHHHHHh
Confidence 122 2222333332222 268899999999999999988775
No 48
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.55 E-value=9.4e-14 Score=109.88 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=104.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHH-HHHHHHHHHHcC----
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-LVVGIIDEAMKK---- 106 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~l~~---- 106 (246)
.++|.|+|.+||||||+++.+++ +|++.+++|+++++...++++....+.+.+.....-.+. .....+.+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 47899999999999999999999 999999999999998888776666666655532211110 111111111100
Q ss_pred ---------C----------C-CCcceEecCCCCCHHHHHHHHHHHHhcC--CCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 107 ---------P----------S-CQKGFILDGFPRTEVQAQKLDEMLEKQG--KKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 107 ---------~----------~-~~~g~iid~~~~~~~~~~~l~~~l~~~~--~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
+ . ...++++-..| +|.+.+ ..+|.+|++++|+++..+|+.+|.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip-----------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~---- 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP-----------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD---- 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch-----------HHHhccccccCCEEEEEECCHHHHHHHHHhcC----
Confidence 0 0 01112222222 122221 237899999999999999999883
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
..+.+....++......... .. ..+ ++++++.+++++.+++.+.+
T Consensus 146 -----------------------------~~~~e~~~~~~~~Q~~~~ek-~~-~ad----~vi~n~~~i~~l~~~i~~~~ 190 (201)
T COG0237 146 -----------------------------GLDEEDAEARLASQRDLEEK-LA-LAD----VVIDNDGSIENLLEQIEKLL 190 (201)
T ss_pred -----------------------------CCCHHHHHHHHHhcCCHHHH-Hh-hcC----ChhhcCCCHHHHHHHHHHHH
Confidence 45667777777665444333 11 111 45789999999999988765
Q ss_pred c
Q 025937 245 S 245 (246)
Q Consensus 245 ~ 245 (246)
.
T Consensus 191 ~ 191 (201)
T COG0237 191 K 191 (201)
T ss_pred H
Confidence 3
No 49
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.55 E-value=7e-13 Score=105.15 Aligned_cols=173 Identities=20% Similarity=0.226 Sum_probs=95.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc---CcceeehHHHHHHHHHccCchHHHHHHHHHcCC--CcCHHHH--------HHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLV--------VGI 99 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~--------~~~ 99 (246)
++|+|.|++||||||+++.|++.+ |..++.... ...+..|..++.++.... ....... ...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 554443311 112233444555444321 1111110 011
Q ss_pred HHHHHcC-CCCCcceEecCCCCCH------------HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 100 IDEAMKK-PSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 100 l~~~l~~-~~~~~g~iid~~~~~~------------~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
..+.+.. ...+..+|+|.++... .....+.... .....|+.+|+|+++++++.+|+.+|.....
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~-- 151 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA-TGGLKPDLTILLDIDPEVGLARIEARGRDDR-- 151 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcCCcch--
Confidence 1111111 1234567777655321 1222232222 2235799999999999999999998852100
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.......+..++... +..+...+ ...++.||++.+++++++.|.+.|.
T Consensus 152 --------------------------~~~~~~~~~~~~~~~---y~~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 152 --------------------------DEQEGLEFHERVREG---YLELAAQE--PERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred --------------------------hhhhhHHHHHHHHHH---HHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 001112233333221 11222211 1257889999999999999998875
No 50
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=8.5e-14 Score=102.93 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=105.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHH----HHHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID----EAMK 105 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~----~~l~ 105 (246)
+.+-.|+++|++||||||+++.|++++++.+++.||+-.. ...+.+.+|..+.|+..+..+. ....
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~ 79 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRK 79 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHH
Confidence 3345899999999999999999999999999999886543 3456778888887754322221 1122
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHh--cC----CCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCC
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEK--QG----KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVP 179 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~--~~----~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~ 179 (246)
....+.++|+.........+..|...+.. .+ ..+ .+|+|.++.+++.+|+..|..| |.|+
T Consensus 80 ~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l-~fi~l~~s~evi~~Rl~~R~gH----------FMp~--- 145 (191)
T KOG3354|consen 80 ALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQL-HFILLSASFEVILKRLKKRKGH----------FMPA--- 145 (191)
T ss_pred HhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceE-EEeeeeccHHHHHHHHhhcccc----------cCCH---
Confidence 22345788886544333344433332220 01 122 6899999999999999999642 4443
Q ss_pred CCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHh
Q 025937 180 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKAL 244 (246)
Q Consensus 180 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l 244 (246)
+.++.++.. ++.--.+...++.|+.. .++++++..|.+.+
T Consensus 146 ------------------~lleSQf~~-------LE~p~~~e~div~isv~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 146 ------------------DLLESQFAT-------LEAPDADEEDIVTISVKTYSVEEIVDTIVKMV 186 (191)
T ss_pred ------------------HHHHHHHHh-------ccCCCCCccceEEEeeccCCHHHHHHHHHHHH
Confidence 222222221 11111122357888876 99999999988765
No 51
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.55 E-value=1.3e-13 Score=109.79 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=104.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH----------------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---------------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------- 96 (246)
++|.|+|++||||||+++.|++ +|+++++.|++.++.+.++++....+.+.+..+...++..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999987 89999999999999888887777777777765433221111
Q ss_pred -----------HHHHHHHHcCC-CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 97 -----------VGIIDEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 97 -----------~~~l~~~l~~~-~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
...+...+... ..+..+++-..|.-.+. .....+|.+|++++|.++..+|+..|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~---------g~~~~~D~vi~V~a~~e~ri~Rl~~R~---- 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK---------GLDRKMDLVVVVDVDVEERVRRLVEKR---- 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc---------CccccCCeEEEEECCHHHHHHHHHHcC----
Confidence 01111111100 01112222222211000 111367999999999999999998873
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
+-+.+.+..|+..+...... .. ... +.|+++++.+++.+++...+
T Consensus 148 -----------------------------g~s~e~~~~ri~~Q~~~~~k----~~-~ad-~vI~N~g~~e~l~~~v~~~~ 192 (200)
T PRK14734 148 -----------------------------GLDEDDARRRIAAQIPDDVR----LK-AAD-IVVDNNGTREQLLAQVDGLI 192 (200)
T ss_pred -----------------------------CCCHHHHHHHHHhcCCHHHH----HH-hCC-EEEECcCCHHHHHHHHHHHH
Confidence 23457777777665443211 11 112 46899999999999998765
Q ss_pred c
Q 025937 245 S 245 (246)
Q Consensus 245 ~ 245 (246)
+
T Consensus 193 ~ 193 (200)
T PRK14734 193 A 193 (200)
T ss_pred H
Confidence 4
No 52
>PRK07933 thymidylate kinase; Validated
Probab=99.55 E-value=1.3e-13 Score=110.81 Aligned_cols=177 Identities=14% Similarity=0.114 Sum_probs=92.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC---cceeehHHHHHHHHHccCchHHHHHHHHHcC--CC-cCHH-HH---------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKG--EL-VSDD-LV--------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~--~~-~~~~-~~--------- 96 (246)
|+|+|.|+.||||||+++.|++.+. ..++-.. .....+++.|..+++.+... .. .... ..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLA----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 5899999999999999999999983 3222110 10012344555555555431 11 0111 00
Q ss_pred -HHHHHHHHcCCCCCcceEecCCCCCHH--H------------HHHHHHHHH-h-cCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 97 -VGIIDEAMKKPSCQKGFILDGFPRTEV--Q------------AQKLDEMLE-K-QGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 97 -~~~l~~~l~~~~~~~g~iid~~~~~~~--~------------~~~l~~~l~-~-~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
...+..++ ..+..+|.|+|..+.. | ..++..+-. . ..+.||++|+|++|+++..+|+.+|
T Consensus 77 ~~~~I~p~l---~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R 153 (213)
T PRK07933 77 ARDELAGLL---AAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR 153 (213)
T ss_pred hHHHHHHHH---hCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh
Confidence 01111122 2234566677654321 1 111221111 1 1247999999999999999999887
Q ss_pred cCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHH
Q 025937 160 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 238 (246)
Q Consensus 160 ~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~ 238 (246)
.... .+.. ..+-+.. ..+..++ +.|.... +.+ ....++.||++.++++|.+
T Consensus 154 ~~~~-~~~~---------------------~d~~E~~-~~f~~~v~~~Y~~~~----~~~-~~~~~~~ida~~~~e~v~~ 205 (213)
T PRK07933 154 AAQD-ADRA---------------------RDAYERD-DGLQQRTGAVYAELA----AQG-WGGPWLVVDPDVDPAALAA 205 (213)
T ss_pred cccc-CCcc---------------------ccccccc-HHHHHHHHHHHHHHH----Hhc-CCCCeEEeCCCCCHHHHHH
Confidence 4210 0000 0000111 1222222 2222221 111 1236888999999999999
Q ss_pred HHHHHh
Q 025937 239 EVQKAL 244 (246)
Q Consensus 239 ~i~~~l 244 (246)
.|.+.|
T Consensus 206 ~i~~~~ 211 (213)
T PRK07933 206 RLAAAL 211 (213)
T ss_pred HHHHHh
Confidence 998876
No 53
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.55 E-value=9.3e-13 Score=102.13 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=71.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQK 111 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~ 111 (246)
++|+|.|++||||||+++.|++.+|+++++.+++++............+........ .+...+...+.... ...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999988877654322111111111111111 11122222222221 245
Q ss_pred ceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 112 g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+|++|..... .+ ...++++|+|++|++.+.+|+..|.
T Consensus 76 ~~Vi~g~~~~~--------~~---~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 76 NVVLESRLAGW--------IV---REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CEEEEecccce--------ee---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 78888854321 11 1346799999999999999998874
No 54
>PRK13946 shikimate kinase; Provisional
Probab=99.54 E-value=2.8e-13 Score=106.59 Aligned_cols=167 Identities=20% Similarity=0.206 Sum_probs=93.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
...++.|+|+|++||||||+++.|++++|+++++.|.++.+.. +......+.. .|..........++...+..
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~-- 79 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG-- 79 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--
Confidence 3456789999999999999999999999999999987766543 2222221111 12111112222333333221
Q ss_pred CCcceEecCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCC
Q 025937 109 CQKGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 186 (246)
Q Consensus 109 ~~~g~iid~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~ 186 (246)
...+|..|. .........+. . -.++|||++|++++.+|+..|..+|.
T Consensus 80 -~~~Vi~~ggg~~~~~~~r~~l~----~----~~~~v~L~a~~e~~~~Rl~~r~~rp~---------------------- 128 (184)
T PRK13946 80 -GPLVLATGGGAFMNEETRAAIA----E----KGISVWLKADLDVLWERVSRRDTRPL---------------------- 128 (184)
T ss_pred -CCeEEECCCCCcCCHHHHHHHH----c----CCEEEEEECCHHHHHHHhcCCCCCCc----------------------
Confidence 123333332 22333333322 1 24789999999999999987743221
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 187 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 187 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.. ..+..+.+++..+.+ ..+|.. ..+.......+++++++.|...+.
T Consensus 129 ---~~-~~~~~~~i~~~~~~R-------~~~y~~-~dl~i~~~~~~~~~~~~~i~~~i~ 175 (184)
T PRK13946 129 ---LR-TADPKETLARLMEER-------YPVYAE-ADLTVASRDVPKEVMADEVIEALA 175 (184)
T ss_pred ---CC-CCChHHHHHHHHHHH-------HHHHHh-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 10 111222232222221 223333 234445677899999999988764
No 55
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.54 E-value=5.7e-13 Score=105.68 Aligned_cols=123 Identities=23% Similarity=0.235 Sum_probs=65.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCc---ceeehHHHHHHHHHccCchHHHHHHHHHcCC--CcCHHHH--------HH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLV--------VG 98 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~---~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~--------~~ 98 (246)
+++|+|.|++||||||+++.|++.++. .++-.. .+..+++|..+++++..+. .+.+... ..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999843 222110 0122345555555533221 1221110 01
Q ss_pred HHHHHHcCC-CCCcceEecCCCCCHH---------HHHHHHHHHHhcCC-CcCEEEEEecCHHHHHHHHhcCc
Q 025937 99 IIDEAMKKP-SCQKGFILDGFPRTEV---------QAQKLDEMLEKQGK-KVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 99 ~l~~~l~~~-~~~~g~iid~~~~~~~---------~~~~l~~~l~~~~~-~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+...+... ..+..+|+|.+..... ...++..+...... .||++|+|++|++.+.+|+..|.
T Consensus 77 ~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 77 HLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111111111 1223455675422110 01111111111111 49999999999999999998874
No 56
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=1.5e-13 Score=110.06 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=103.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc--------CC-CcCHHHH----
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK--------GE-LVSDDLV---- 96 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~--------~~-~~~~~~~---- 96 (246)
+.+++|.|+|++||||||+++.|++ +|+..++.|.+.++...++......+...+.. +. .+....+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3457899999999999999999987 89999999988887655544333333333321 11 0111111
Q ss_pred ------------------HHHHHHHHcCCC-CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025937 97 ------------------VGIIDEAMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 97 ------------------~~~l~~~l~~~~-~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
...+...+.... .+..+++-+.|.-.+. .....+|.+|++++|.++..+|+.
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~---------~~~~~~d~ii~V~a~~e~~~~Rl~ 152 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES---------GGDAGLDFIVVVAADTELRLERAV 152 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec---------CchhcCCeEEEEECCHHHHHHHHH
Confidence 111111121111 1223444333322110 011346899999999999999999
Q ss_pred cCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHH
Q 025937 158 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT 237 (246)
Q Consensus 158 ~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~ 237 (246)
.|. ..+.+.+..|++.+......+. +. . +.|+++++.+++.
T Consensus 153 ~R~---------------------------------~~s~e~~~~Ri~~q~~~~~~~~-~a----d-~vI~N~g~~e~l~ 193 (208)
T PRK14731 153 QRG---------------------------------MGSREEIRRRIAAQWPQEKLIE-RA----D-YVIYNNGTLDELK 193 (208)
T ss_pred HcC---------------------------------CCCHHHHHHHHHHcCChHHHHH-hC----C-EEEECCCCHHHHH
Confidence 884 2356888888887655444332 21 2 4678889999999
Q ss_pred HHHHHHhc
Q 025937 238 SEVQKALS 245 (246)
Q Consensus 238 ~~i~~~l~ 245 (246)
++|...++
T Consensus 194 ~~i~~~~~ 201 (208)
T PRK14731 194 AQTEQLYQ 201 (208)
T ss_pred HHHHHHHH
Confidence 99988764
No 57
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.54 E-value=3.6e-13 Score=104.66 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=66.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
..++.|+|.|+|||||||+++.|++.+|+.+++.|++++.... ..+...+.. .|...........+......
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~--- 73 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFEE---EGEAAFRELEEEVLAELLAR--- 73 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhc---
Confidence 3567999999999999999999999999999999888765322 111111111 11111111122233322221
Q ss_pred CcceEecCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 110 QKGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 110 ~~g~iid~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
...+|..|. ........ .+.. ...+|+|++|.+.+.+|+..+.
T Consensus 74 ~~~vi~~g~~~~~~~~~r~----~l~~----~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 74 HNLVISTGGGAVLREENRA----LLRE----RGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred CCCEEEeCCCEeecHHHHH----HHHh----CCEEEEEECCHHHHHHHhcCCC
Confidence 122333332 11112222 2211 2488999999999999998764
No 58
>PRK06762 hypothetical protein; Provisional
Probab=99.54 E-value=5.1e-13 Score=103.27 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=96.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc--CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
.|++|+|.|+|||||||+|+.|++.+ ++.+++.|. +++.+.... ........+.+.......+ .
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~----------~~~~~~~~~~~~~~~~~~~---~ 66 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVK----------DGPGNLSIDLIEQLVRYGL---G 66 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhcccc----------CCCCCcCHHHHHHHHHHHH---h
Confidence 36799999999999999999999998 566777754 443222100 0000111222222222222 2
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
.+..+|+|+..........+..+....+ .+..+|+|++|.+++.+|...|...
T Consensus 67 ~g~~vild~~~~~~~~~~~~~~l~~~~~-~~~~~v~Ldap~e~~~~R~~~R~~~-------------------------- 119 (166)
T PRK06762 67 HCEFVILEGILNSDRYGPMLKELIHLFR-GNAYTYYFDLSFEETLRRHSTRPKS-------------------------- 119 (166)
T ss_pred CCCEEEEchhhccHhHHHHHHHHHHhcC-CCeEEEEEeCCHHHHHHHHhccccc--------------------------
Confidence 3456788877554444454555544433 3558999999999999999888420
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.....+.++..++.+.. +. .+ ..+.++.+.++++|.+.|...+
T Consensus 120 ----~~~~~~~l~~~~~~~~~----~~-~~----~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 120 ----HEFGEDDMRRWWNPHDT----LG-VI----GETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred ----ccCCHHHHHHHHhhcCC----cC-CC----CeEEecCCCCHHHHHHHHHHHh
Confidence 01234555555443222 11 11 2356677789999999998765
No 59
>PRK04182 cytidylate kinase; Provisional
Probab=99.52 E-value=1.3e-12 Score=102.02 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=69.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcC--HHHHHHHHHHHHcCCCCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~ 110 (246)
|+|+|.|++||||||+++.|++.+|+++++.+++++............+... +...+ ...+...+. .+. ...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~--~~~ 74 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPEIDKEIDRRQL-EIA--EKE 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCchHHHHHHHHHH-HHH--hcC
Confidence 5799999999999999999999999999999888877554322111122111 11111 111112211 111 134
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.++|++|..... .+. ..++++|+|++|++++.+|+..|.
T Consensus 75 ~~~Vi~g~~~~~--------~~~---~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 75 DNVVLEGRLAGW--------MAK---DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCEEEEEeecce--------Eec---CCCCEEEEEECCHHHHHHHHHhcc
Confidence 568888742110 111 126799999999999999998874
No 60
>PLN02422 dephospho-CoA kinase
Probab=99.52 E-value=4.7e-13 Score=108.05 Aligned_cols=163 Identities=17% Similarity=0.065 Sum_probs=102.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-----CCCcCHHHH------------
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLV------------ 96 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~------------ 96 (246)
+|.|+|++||||||+++.|+ .+|++++++|++.++.+.++++....+.+.|.. ++.+....+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 79999999999999999998 589999999999999888777655555555532 122222111
Q ss_pred ------HHH----HHHHHcCC-CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 97 ------VGI----IDEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 97 ------~~~----l~~~l~~~-~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
... +...+... .....+++-..|.-.+. .+...+|.+|++++|.++..+|+..|.
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---------~~~~~~D~vI~V~a~~e~ri~RL~~R~----- 147 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---------KMDKWTKPVVVVWVDPETQLERLMARD----- 147 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---------chhhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 111 11111111 01122333333322110 112357999999999999999999884
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+++..|++..... .+.. .... +.|+++++.+++..++.+.++
T Consensus 148 ----------------------------g~s~eea~~Ri~~Q~~~----eek~-~~AD-~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 148 ----------------------------GLSEEQARNRINAQMPL----DWKR-SKAD-IVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred ----------------------------CCCHHHHHHHHHHcCCh----hHHH-hhCC-EEEECCCCHHHHHHHHHHHHH
Confidence 23557777777542221 1111 1122 467888999999999887764
No 61
>PRK08118 topology modulation protein; Reviewed
Probab=99.52 E-value=7.6e-14 Score=107.95 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=71.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
+.|+|+|+|||||||+|+.|++.++++++++|+++... ....++++....++...+. ..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~----~~~ 61 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK----EDE 61 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc----CCC
Confidence 47999999999999999999999999999998876430 0112334434444444332 357
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
||+||....... . .+ ..+|.+|+|++|.+++..|+.+|..
T Consensus 62 wVidG~~~~~~~-~----~l----~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 62 WIIDGNYGGTMD-I----RL----NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEEeCCcchHHH-H----HH----HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 999995443211 1 11 3479999999999999999988854
No 62
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.51 E-value=1.3e-12 Score=101.56 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=65.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
+..|+|.|++||||||+++.|++.+++.+++.|..+.+... ..+ ...+.. |.........+++.. +. ..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i----~~~~~~~g~~~fr~~e~~~l~~-l~---~~ 73 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADI----GWVFDVEGEEGFRDREEKVINE-LT---EK 73 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCH----hHHHHHhCHHHHHHHHHHHHHH-HH---hC
Confidence 55899999999999999999999999999999876655322 111 111111 110000111222222 21 12
Q ss_pred cceEec-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 111 KGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 111 ~g~iid-~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
..+++. |. +........| .. .+.+|||++|.+++.+|+..+.
T Consensus 74 ~~~vi~~ggg~v~~~~~~~~l----~~----~~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRNRL----SA----RGVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred CCEEEEcCCchhCCHHHHHHH----Hh----CCEEEEEeCCHHHHHHHHhCCC
Confidence 234453 22 2222333322 22 2589999999999999997654
No 63
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.51 E-value=7.2e-13 Score=97.52 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=102.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
...|.|+|+|-||+||||+|.+||+.+|+.+|.+++++++. .+.....+.. +...+..+.+++-+...+..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~y-~c~i~DEdkv~D~Le~~m~~--- 75 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEEY-KCHILDEDKVLDELEPLMIE--- 75 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhcccccc-cCccccHHHHHHHHHHHHhc---
Confidence 44679999999999999999999999999999999998762 1111111111 12345566677777776654
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
.|.|+|=..-.. +.+ -.+|+|++|.+|-+.+..|+..|..+.
T Consensus 76 -Gg~IVDyHgCd~-----Fpe------rwfdlVvVLr~~~s~LY~RL~sRgY~e-------------------------- 117 (176)
T KOG3347|consen 76 -GGNIVDYHGCDF-----FPE------RWFDLVVVLRTPNSVLYDRLKSRGYSE-------------------------- 117 (176)
T ss_pred -CCcEEeecccCc-----cch------hheeEEEEEecCchHHHHHHHHcCCCH--------------------------
Confidence 567777432221 111 247999999999999999999885311
Q ss_pred ccCCCCcHHHHHH--HHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 190 IQRKDDTAAVLKS--RLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 190 ~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
..+.. ....|....+...+.|.. .+++.+.++.. +++...|.+++
T Consensus 118 --------~Ki~eNiecEIfgv~~eea~eSy~~-~iV~eL~s~~~-Eem~~ni~ri~ 164 (176)
T KOG3347|consen 118 --------KKIKENIECEIFGVVLEEARESYSP-KIVVELQSETK-EEMESNISRIL 164 (176)
T ss_pred --------HHHhhhcchHHHHHHHHHHHHHcCC-cceeecCcCCH-HHHHHHHHHHH
Confidence 11111 123344444455555654 36677776655 87777766543
No 64
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.51 E-value=1.5e-12 Score=118.05 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=77.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 107 (246)
|.+.+.|+|+|+|||||||+++.||+.+|++++|+|+.+.+.. |..+.+.+.. |.....+...+.+.+...
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~-- 74 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLE-- 74 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5567799999999999999999999999999999999888743 3445554432 322222223333333221
Q ss_pred CCCcceEec-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 108 SCQKGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 108 ~~~~g~iid-~--~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
..+.||. | .+........|.+.+.+.+ .+|||+++++++.+|+..+
T Consensus 75 --~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g----~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 75 --DFDGIFSLGGGAPMTPSTQHALASYIAHGG----RVVYLDADPKEAMERANRG 123 (542)
T ss_pred --cCCeEEECCCchhCCHHHHHHHHHHHhcCC----EEEEEECCHHHHHHHHhCC
Confidence 1234552 2 2344444554544444332 7899999999999998754
No 65
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=1.7e-12 Score=103.02 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=99.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC----CCcCHHH-----------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG----ELVSDDL----------- 95 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~----------- 95 (246)
.|..|.|+|++||||||+++.|++.+|+++++.|.+.++.+.+ +.....+.+.+..+ +.+....
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 3578999999999999999999999999999999998887654 33333333333221 1122111
Q ss_pred -----------HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 96 -----------VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 96 -----------~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
+...+.+.+... ....++++ .|.-.+..- .....+|.+|++.+|.++..+|+..|.
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~-~~~~vv~e-ipLL~E~~~-------~~~~~~D~vi~V~a~~e~ri~Rl~~Rd---- 150 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKES-DTVMTIVD-IPLLGPYNF-------RHYDYLKKVIVIKADLETRIRRLMERD---- 150 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc-CCCeEEEE-echhhhccC-------chhhhCCEEEEEECCHHHHHHHHHHcC----
Confidence 111222222211 11223333 232111100 001247899999999999999998873
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCC-ChhHHHHHHHHH
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKA 243 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~ev~~~i~~~ 243 (246)
..+.+....|++........ . ... . ++|++++ +.+++.+++.+.
T Consensus 151 -----------------------------~~s~~~a~~ri~~Q~~~eek-~-~~a---D-~VI~N~g~~~~~l~~~~~~~ 195 (204)
T PRK14733 151 -----------------------------GKNRQQAVAFINLQISDKER-E-KIA---D-FVIDNTELTDQELESKLITT 195 (204)
T ss_pred -----------------------------CCCHHHHHHHHHhCCCHHHH-H-HhC---C-EEEECcCCCHHHHHHHHHHH
Confidence 33567777777653322111 1 122 2 3567777 999999999877
Q ss_pred hc
Q 025937 244 LS 245 (246)
Q Consensus 244 l~ 245 (246)
++
T Consensus 196 ~~ 197 (204)
T PRK14733 196 IN 197 (204)
T ss_pred HH
Confidence 64
No 66
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.50 E-value=5.9e-13 Score=105.10 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=100.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHH-----cCCCcCHHHH------------
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-----KGELVSDDLV------------ 96 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~------------ 96 (246)
+|+|+|.+||||||+++.|++..|++++++|++.++.+..+++....+.+.+. ..+.+....+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999987799999999999988877665555554443 1222221111
Q ss_pred ----------HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 97 ----------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 97 ----------~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
...+.+.+........+|+-+.|...+. . ....+|.++++++|.++..+|+..|.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~-------~~~~~D~vv~V~~~~~~~~~Rl~~R~------ 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--K-------LRSLCDRVIVVDVSPQLQLERLMQRD------ 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--C-------cHHhCCEEEEEECCHHHHHHHHHHcC------
Confidence 1222222222211112444334322111 0 11346899999999999999999873
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHH
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 241 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~ 241 (246)
+.+.+.+..|+...... .+... ... +.|+++++++++..++.
T Consensus 146 ---------------------------~~s~~~~~~r~~~q~~~----~~~~~-~ad-~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 ---------------------------NLTEEEVQKRLASQMDI----EERLA-RAD-DVIDNSATLADLVKQLE 187 (188)
T ss_pred ---------------------------CCCHHHHHHHHHhcCCH----HHHHH-hCC-EEEECCCCHHHHHHHHh
Confidence 33557777777764321 11111 112 45788899999998875
No 67
>PLN02199 shikimate kinase
Probab=99.49 E-value=3.2e-12 Score=105.73 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=69.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~ 108 (246)
.++..|+|+|++||||||+++.||+.+|+++++.|.++++... |..+.+.+.. |.....+...+.+.+. .
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L----~ 170 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKL----S 170 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHH----H
Confidence 3456899999999999999999999999999999999988532 2223333332 3222222223333332 1
Q ss_pred CCcceEec-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 109 CQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 109 ~~~g~iid-~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
...+.||. |. +.....+. .+. . -.+|||++|.+++.+|+..
T Consensus 171 ~~~~~VIStGGG~V~~~~n~~----~L~-~----G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 171 SRYQVVVSTGGGAVIRPINWK----YMH-K----GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred hcCCEEEECCCcccCCHHHHH----HHh-C----CeEEEEECCHHHHHHHHhh
Confidence 12234443 22 22222322 222 1 3789999999999999985
No 68
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.49 E-value=8e-13 Score=101.97 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=109.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHH--------------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG-------------- 98 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------- 98 (246)
.++.|+|..||||||+++.+. .+|++.||+|.+.|+...++++..+.+.+.|.....+++..+.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 468899999999999999997 79999999999999999999999998888887654443322211
Q ss_pred --------------HHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 99 --------------IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 99 --------------~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
++.+.....-.+..+++=..|.-.+- . ++ .....+|...|+.+...+|+..|.
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~-~~-------~~~~~tvvV~cd~~~Ql~Rl~~Rd---- 147 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-K-LL-------KICHKTVVVTCDEELQLERLVERD---- 147 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-h-HH-------hheeeEEEEEECcHHHHHHHHHhc----
Confidence 11111111112222222223322222 1 11 223478889999999999999873
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
..+.+..++|++..... .+..... =+++|++++++++.++|..++
T Consensus 148 -----------------------------~lse~dAe~Rl~sQmp~----~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 148 -----------------------------ELSEEDAENRLQSQMPL----EKKCELA--DVVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred -----------------------------cccHHHHHHHHHhcCCH----HHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence 45677888888764443 3333221 156899999999999998764
No 69
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.49 E-value=1.7e-12 Score=100.04 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=87.8
Q ss_pred EEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcC----HHHHHHHHHHHHcCCCCC
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~ 110 (246)
|+|.|++||||||+++.|+..++..+++.|++...... +. ...+.... ..+...+..........+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLNDASTAAAAKN 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999876322100 00 00011111 111111111111111112
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 190 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~ 190 (246)
...|++.......... .+...+..+ .+|+|++|.+++.+|+..|..+
T Consensus 71 ~~~Vi~~t~~~~~~r~----~~~~~~~~~-~~i~l~~~~e~~~~R~~~R~~~---------------------------- 117 (163)
T TIGR01313 71 KVGIITCSALKRHYRD----ILREAEPNL-HFIYLSGDKDVILERMKARKGH---------------------------- 117 (163)
T ss_pred CCEEEEecccHHHHHH----HHHhcCCCE-EEEEEeCCHHHHHHHHHhccCC----------------------------
Confidence 2235554332222222 223344333 6799999999999999988411
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 191 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 191 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
....+.++.++..++. .......++.||++.+++++.++|.+.|-
T Consensus 118 ---~~~~~~i~~~~~~~~~-------~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 118 ---FMKADMLESQFAALEE-------PLADETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred ---CCCHHHHHHHHHHhCC-------CCCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence 0122334443333211 00111257899999999999999988763
No 70
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.49 E-value=4.6e-13 Score=100.79 Aligned_cols=117 Identities=24% Similarity=0.384 Sum_probs=77.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCch---HHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
+|+|.|+|||||||+++.|++.++..+++.|++.........+. ........ ...+...+...+. .+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~---~g 70 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR---NG 70 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH---TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH---cC
Confidence 58999999999999999999999999999977665432211110 00010000 1112233333332 34
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
..+|+|...........+.+++...+... .+|+|+++.+++.+|+..|..
T Consensus 71 ~~~vvd~~~~~~~~r~~~~~~~~~~~~~~-~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 71 NSVVVDNTNLSREERARLRELARKHGYPV-RVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp -EEEEESS--SHHHHHHHHHHHHHCTEEE-EEEEECHHHHHHHHHHHTTHC
T ss_pred CCceeccCcCCHHHHHHHHHHHHHcCCeE-EEEEEECCHHHHHHHHHhcCC
Confidence 55888987777777777877777766554 899999999999999999863
No 71
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.46 E-value=3.4e-12 Score=103.98 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=101.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-----CCCcCHHHH-----------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLV----------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~----------- 96 (246)
++|.|+|.+||||||+++.|++.+|++++|+|.+.++...++++....+.+.|.. ++.+....+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999899999999999999887776655555554432 122222111
Q ss_pred -----------HHHHHHHHcC---------CC-CCc-ceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHH
Q 025937 97 -----------VGIIDEAMKK---------PS-CQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154 (246)
Q Consensus 97 -----------~~~l~~~l~~---------~~-~~~-g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~ 154 (246)
...+.+.+.. .. .+. .+++| .|.-.+.. + ....+|.+|++.+|.++..+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E~~------~--~~~~~D~iv~V~a~~e~ri~ 152 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFETK------T--FTYFVSASVVVSCSEERQIE 152 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhccC------c--hhhcCCeEEEEECCHHHHHH
Confidence 1111111110 00 112 23333 33221100 0 01235999999999999999
Q ss_pred HHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC--CC
Q 025937 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE--KP 232 (246)
Q Consensus 155 Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~ 232 (246)
|+..|. +.+.+++.+|+..... ..+. .....+ +|+++ ++
T Consensus 153 RL~~R~---------------------------------g~s~eea~~Ri~~Q~~----~~ek-~~~aD~-VI~N~~~g~ 193 (244)
T PTZ00451 153 RLRKRN---------------------------------GFSKEEALQRIGSQMP----LEEK-RRLADY-IIENDSADD 193 (244)
T ss_pred HHHHcC---------------------------------CCCHHHHHHHHHhCCC----HHHH-HHhCCE-EEECCCCCC
Confidence 998873 3356788888865222 1111 111233 46667 89
Q ss_pred hhHHHHHHHHHh
Q 025937 233 PQEVTSEVQKAL 244 (246)
Q Consensus 233 ~~ev~~~i~~~l 244 (246)
.+++.++|...+
T Consensus 194 ~~~L~~~v~~~~ 205 (244)
T PTZ00451 194 LDELRGSVCDCV 205 (244)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 72
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.46 E-value=2.5e-12 Score=103.92 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=91.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehH--HHHHHHHHccCchHH------HHHHHHHcCC---CcCHHHHHHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAAKTPLGI------KAKEAMDKGE---LVSDDLVVGIIDE 102 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~--~l~~~~~~~~~~~g~------~~~~~~~~~~---~~~~~~~~~~l~~ 102 (246)
+|+|.|+.||||||+++.|++.++..++... ......-+.++.++. .++.+..+.. .........++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4899999999999999999999987544321 000000001111221 1333333222 2222221111111
Q ss_pred HHc--------CCCCCcceEecCCCCCHH---------------HHHHHHHH---HHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 103 AMK--------KPSCQKGFILDGFPRTEV---------------QAQKLDEM---LEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 103 ~l~--------~~~~~~g~iid~~~~~~~---------------~~~~l~~~---l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
+.. ....+.++|+|++..+.. ....+.++ +....+.||++|+|++|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 111 123346778888743211 11111111 1122268999999999999999999
Q ss_pred hcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC--CChh
Q 025937 157 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE--KPPQ 234 (246)
Q Consensus 157 ~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~ 234 (246)
.+|... ++ ...+. .+..++..++..+- ...|.....++.+|++ .+.+
T Consensus 161 ~~R~~~------~e----------------------~~~~~-~yl~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e 209 (219)
T cd02030 161 KKRGDP------HE----------------------MKVTS-AYLQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTE 209 (219)
T ss_pred HHcCCc------hh----------------------hcccH-HHHHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHH
Confidence 887421 00 01122 22223322222110 1112333478899998 8999
Q ss_pred HHHHHHHH
Q 025937 235 EVTSEVQK 242 (246)
Q Consensus 235 ev~~~i~~ 242 (246)
+|+.+|..
T Consensus 210 ~i~~~I~~ 217 (219)
T cd02030 210 KVVEDIEY 217 (219)
T ss_pred HHHHHHHc
Confidence 99888764
No 73
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.45 E-value=3.7e-12 Score=99.75 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=75.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCC-----CcCHH--------------
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-----LVSDD-------------- 94 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~-------------- 94 (246)
+|.|+|++||||||+++.|++ +|++++++|++.++....+...+..+...+.... .+...
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999 9999999999999988877777666666664321 22111
Q ss_pred ----HHHHHHHHH----HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 95 ----LVVGIIDEA----MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 95 ----~~~~~l~~~----l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+...+... +.... ...+++-..|...+.. ....+|.+|++++|+++..+|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~-~~~~vive~plL~e~~---------~~~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEAR-KEKVVVLDIPLLFETG---------LEKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CCCEEEEEehHhhcCC---------cHHhCCeEEEEECCHHHHHHHHHHcC
Confidence 111112112 11111 1234443333221110 11356899999999999999998873
No 74
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=2.6e-12 Score=101.82 Aligned_cols=162 Identities=10% Similarity=0.092 Sum_probs=100.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-----CCCcCHHH-------------
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDL------------- 95 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~------------- 95 (246)
.|.|+|++||||||+++.|++ +|+.+++.|.+.+..+.++......+.+.|.. .+.+....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 478999999999999999976 79999999999998777666655555554432 12222111
Q ss_pred -----H----HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 96 -----V----VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 96 -----~----~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
+ ...+...+.... ...+++-..|.-.+. .....+|.+|++++|+++..+|+..|.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~pLL~E~---------~~~~~~D~vi~V~a~~e~r~~RL~~R~------ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTA-EGKLVIWEVPLLFET---------DAYTLCDATVTVDSDPEESILRTISRD------ 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh-cCCcEEEEeeeeeEc---------CchhhCCEEEEEECCHHHHHHHHHHcC------
Confidence 1 111122221111 123444333432211 011346999999999999999999873
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+++..|+.... +..+.... .. +.|+++++.+++..++...++
T Consensus 144 ---------------------------g~s~e~a~~ri~~Q~----~~~~k~~~-aD-~vI~N~~~~~~l~~~v~~l~~ 189 (196)
T PRK14732 144 ---------------------------GMKKEDVLARIASQL----PITEKLKR-AD-YIVRNDGNREGLKEECKILYS 189 (196)
T ss_pred ---------------------------CCCHHHHHHHHHHcC----CHHHHHHh-CC-EEEECCCCHHHHHHHHHHHHH
Confidence 335677888876622 12222111 23 357788899999999987653
No 75
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.44 E-value=6.1e-12 Score=106.69 Aligned_cols=119 Identities=12% Similarity=0.151 Sum_probs=69.8
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKK 106 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ 106 (246)
-..++..|+|+|++||||||+++.|++.+|+++++.|..+.+... ..+.+.+. .|.........+.+...+..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G------~~i~ei~~~~G~~~fr~~e~~~l~~ll~~ 202 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG------LSVSEIFALYGQEGYRRLERRALERLIAE 202 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC------CCHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence 357778999999999999999999999999999999877665321 11222222 12111111222333332221
Q ss_pred CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
....||............+..++. ..++|||++|++++.+|+..|.
T Consensus 203 ---~~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 203 ---HEEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred ---CCCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCC
Confidence 123445322221211122222221 2379999999999999998764
No 76
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.44 E-value=1.4e-12 Score=102.69 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=88.3
Q ss_pred EECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHH------------HHHHHHH
Q 025937 37 LVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV------------GIIDEAM 104 (246)
Q Consensus 37 l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~l~~~l 104 (246)
|.|++||||||+++.|++++....+.+ ++ ...+..++.|..+++++......+..... ..+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~--~~-~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV--II-TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE--EE-EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc--cc-cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999984322210 00 00123455666777776643333332211 1112222
Q ss_pred cCCCCCcceEecCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccccc
Q 025937 105 KKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~------------~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
..+..+|+|.|..+ ......+...+. +..||++|+|++++++..+|+..|...
T Consensus 78 ---~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~--~~~PDl~~~Ldv~pe~~~~R~~~r~~~---------- 142 (186)
T PF02223_consen 78 ---KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIF--LPKPDLTFFLDVDPEEALKRIAKRGEK---------- 142 (186)
T ss_dssp ---HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHH--TTE-SEEEEEECCHHHHHHHHHHTSST----------
T ss_pred ---cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhc--CCCCCEEEEEecCHHHHHHHHHcCCcc----------
Confidence 12355666764211 112221222111 128999999999999999999998520
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHH
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i 240 (246)
.+.......+ +..++.....+.+ ..+.+++||++.++++|+++|
T Consensus 143 ------------------~~~~~~~~~~---~~~~~~~y~~l~~---~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 143 ------------------DDEEEEDLEY---LRRVREAYLELAK---DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp ------------------TTTTTHHHHH---HHHHHHHHHHHHH---TTTTEEEEETTS-HHHHHHHH
T ss_pred ------------------chHHHHHHHH---HHHHHHHHHHHHc---CCCCEEEEECCCCHHHHHhhC
Confidence 0011111122 2223333332332 346799999999999999987
No 77
>PRK13976 thymidylate kinase; Provisional
Probab=99.43 E-value=1.2e-11 Score=99.05 Aligned_cols=116 Identities=20% Similarity=0.145 Sum_probs=68.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCc-----ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH-H---------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-V--------- 97 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~-----~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~--------- 97 (246)
++|+|.|++||||||+++.|++.|.- ..+-. + -+.++.+|..+++.+.....+.+... .
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999998742 11111 1 12345677777777654222222211 1
Q ss_pred --HHHHHHHcCCCCCcceEecCCCCCH------------HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 98 --GIIDEAMKKPSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 98 --~~l~~~l~~~~~~~g~iid~~~~~~------------~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
..+...+ ..+..+|.|.|..+. +....+.... .+..||++|+|++|+++..+|+..+
T Consensus 75 ~~~~I~p~l---~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 75 FVKVILPAL---LQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV--VDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHH---HCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHHHHHHHhccc
Confidence 1111111 223456667664332 1222222222 2357999999999999999998644
No 78
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.43 E-value=3.4e-12 Score=100.61 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=91.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc-----cCchHHHHHHHHHcCCCcCHHHH--------HH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-----KTPLGIKAKEAMDKGELVSDDLV--------VG 98 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~--------~~ 98 (246)
+.+++|+||+||||||+++.|+..++..++..+..+...... -...++.+...+..+... ..+. ..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcH
Confidence 358999999999999999999998876555443322221100 011223333333333221 1110 01
Q ss_pred HHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCC
Q 025937 99 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 178 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~ 178 (246)
-+...+. .+..+|++|. ...... ....+ ..+-.+|+|++|.+++.+|+..|.
T Consensus 81 ~~~~~l~---~g~~VI~~G~---~~~~~~---~~~~~-~~~~~vi~l~~s~e~l~~RL~~R~------------------ 132 (186)
T PRK10078 81 EIDLWLH---AGFDVLVNGS---RAHLPQ---ARARY-QSALLPVCLQVSPEILRQRLENRG------------------ 132 (186)
T ss_pred HHHHHHh---CCCEEEEeCh---HHHHHH---HHHHc-CCCEEEEEEeCCHHHHHHHHHHhC------------------
Confidence 1222222 2345666654 111111 22222 234478999999999999998763
Q ss_pred CCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 179 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 179 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.+..|+..+. .|. ...++.||++++++++.++|.+.+.
T Consensus 133 ---------------~~~~~~i~~rl~r~~--------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~ 175 (186)
T PRK10078 133 ---------------RENASEINARLARAA--------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLH 175 (186)
T ss_pred ---------------CCCHHHHHHHHHHhh--------hhc-cCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 123456777775421 122 1245678888999999999998874
No 79
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.41 E-value=8.4e-12 Score=95.74 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCcceEec-C-
Q 025937 41 PGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKGFILD-G- 117 (246)
Q Consensus 41 ~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~g~iid-~- 117 (246)
|||||||+++.||+.+|++++|+|+.+.+.. |..+.+.+.. |..........++...+... +.||. |
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~----~~VIa~GG 70 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKEN----NCVIACGG 70 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----SEEEEE-T
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhccC----cEEEeCCC
Confidence 7999999999999999999999999887743 2334444432 21111122233443333222 45553 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 118 -FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 118 -~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+......+.|. + -..+|||+++++.+.+|+..+.
T Consensus 71 G~~~~~~~~~~L~----~----~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 71 GIVLKEENRELLK----E----NGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp TGGGSHHHHHHHH----H----HSEEEEEE--HHHHHHHHHHHC
T ss_pred CCcCcHHHHHHHH----h----CCEEEEEeCCHHHHHHHHhCCC
Confidence 333444444433 2 2489999999999999997764
No 80
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.40 E-value=1.8e-12 Score=101.16 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=74.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-----CCcCHHHH-----------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~----------- 96 (246)
++|.|+|..||||||+++.|++ +|++++++|.+.++.+.++++....+.+.|... +.+....+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5799999999999999999998 999999999999998877777777776666532 22222111
Q ss_pred -----------HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 97 -----------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 97 -----------~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
...+...+........++++ .|.-.+. .+...+|.+|++.+|.++..+|+..|.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~---------~~~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES---------GLEKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT---------TGGGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh---------hHhhhhceEEEEECCHHHHHHHHHhhC
Confidence 12222222222222334443 3322111 112457999999999999999998873
No 81
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.39 E-value=2.4e-11 Score=100.11 Aligned_cols=112 Identities=23% Similarity=0.260 Sum_probs=68.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
+|+|.|+|||||||+|+.|++.++ +.+++. +.++..+..... .....+ .+.....+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC--
Confidence 489999999999999999999873 345555 445443321100 111111 11122334333322
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+..+|+|+..........+...+...+ .+..+|||++|.+.+.+|...|.
T Consensus 68 -~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 68 -KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred -CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhCC
Confidence 345788887655444444554555554 34589999999999999988763
No 82
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.36 E-value=2.2e-11 Score=106.46 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=97.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-----CCcCHHHH-----------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~----------- 96 (246)
+.|.|+|++||||||+++.|++ +|++++++|.+.++.+.+++.....+.+.+..+ +.+....+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999988 899999999999998776654434444433321 22221111
Q ss_pred -----------HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 97 -----------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 97 -----------~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
...+.+.+... .+..+++.+.|.-.+.. ....+|.+|++++|.++..+|+..|+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~---------~~~~~D~iI~V~ap~e~ri~Rl~~rR----- 145 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESG---------MAPLFHLVVVVDADVEVRVRRLVEQR----- 145 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCC---------chhhCCEEEEEECCHHHHHHHHHhcC-----
Confidence 11112222222 22345555544322110 11346899999999999999998753
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+.+....++..... ..... ... . +.|+++++.+++..++.+.++
T Consensus 146 ----------------------------g~s~~~a~~ri~~Q~~-~e~k~-~~A---D-~vIdN~~s~e~l~~~v~~~l~ 191 (395)
T PRK03333 146 ----------------------------GMAEADARARIAAQAS-DEQRR-AVA---D-VWLDNSGTPDELVEAVRALWA 191 (395)
T ss_pred ----------------------------CCCHHHHHHHHHhcCC-hHHHH-HhC---C-EEEECCCCHHHHHHHHHHHHH
Confidence 1233344444433211 11111 111 2 457888999999998887653
No 83
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.36 E-value=2.4e-11 Score=92.51 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=64.6
Q ss_pred EEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcceE
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI 114 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~i 114 (246)
|+|+|+|||||||+++.|++.+|+.+++.+.++...... .....+.. .+ .+.....-.+.+.......++|
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~~~~~~v 72 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLLTKENAV 72 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHhccCCcE
Confidence 789999999999999999999999999998887764321 11111111 11 1112211111111122223455
Q ss_pred ecCCC---CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 115 LDGFP---RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 115 id~~~---~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
++... ......+ .+. ....+|||++|.+++.+|+..|.
T Consensus 73 i~~g~~~i~~~~~~~----~~~----~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 73 IATGGGAVLREENRR----LLL----ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EECCCCccCcHHHHH----HHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence 54322 2222211 221 23489999999999999998874
No 84
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.35 E-value=5.7e-11 Score=92.99 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
.++|+|.|+.|+||||+++.||+++|..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 469999999999999999999999996543
No 85
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.35 E-value=2.6e-11 Score=92.09 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=69.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcC----HHHHHHHHHHHHcCC-C
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDEAMKKP-S 108 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~-~ 108 (246)
+|+|.|+|||||||+++.|++.++..+++.|.+...... ..+..+.... ..+...+........ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999998776543110 0111111111 111111111111111 2
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+..+|++...........+..++ .+. +-.+|+|++|.+++.+|+..|.
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~--~~~-~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGA--ANP-RVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcC--CCC-CEEEEEEECCHHHHHHHHHhcc
Confidence 345678876544444444444332 233 3479999999999999999885
No 86
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.34 E-value=5.6e-11 Score=94.10 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=64.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHH-------HHHHHHHHHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL-------VVGIIDEAMKK 106 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~ 106 (246)
+|+|.|++||||||+++.|++.+++.++.-.. .. ...... .++.++.+........ ..+.+...+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~~-~~~~~~---~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--EP-DVEGNP---FLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc--cc-cCCCCC---CHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999988765442110 00 000011 1111111110000000 11111222221
Q ss_pred CCCCcceEecCCCCCHH---------------HHHHHHHHH---HhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 107 PSCQKGFILDGFPRTEV---------------QAQKLDEML---EKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~---------------~~~~l~~~l---~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
...+..+|+|.++.... ....+..++ ......||++|+|+++++++.+|+.+|.
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 22346688888764321 111111222 1123679999999999999999998874
No 87
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.33 E-value=4.7e-11 Score=94.61 Aligned_cols=175 Identities=15% Similarity=0.209 Sum_probs=99.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchH-HHHHHHHHcCCCcCH----HH----------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMDKGELVSD----DL---------- 95 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~~~~----~~---------- 95 (246)
.+++|++.|+|||||||+|+.|++++|+.++..+|++++.+.+....+ ....+.+..+..+++ ..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467999999999999999999999999998999999999887533322 111111111111111 11
Q ss_pred ----HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEec-CHHHHHHHHhcCcCCCCCCcccc
Q 025937 96 ----VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI-DDAVLEERITGRWIHPSSGRTYH 170 (246)
Q Consensus 96 ----~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~-~~e~~~~Rl~~r~~~~~~g~~~~ 170 (246)
+..++...+ ..+..+|+++........... ... .. .++++.+ +++...+|+..|..+.
T Consensus 82 v~~~L~~va~~~l---~~G~sVIvEgv~l~p~~~~~~----~~~--~v-~~i~l~v~d~e~lr~Rl~~R~~~~------- 144 (197)
T PRK12339 82 IMPGINRVIRRAL---LNGEDLVIESLYFHPPMIDEN----RTN--NI-RAFYLYIRDAELHRSRLADRINYT------- 144 (197)
T ss_pred HHHHHHHHHHHHH---HcCCCEEEEecCcCHHHHHHH----Hhc--Ce-EEEEEEeCCHHHHHHHHHHHhhcc-------
Confidence 111122222 235668899876555443211 111 22 5566665 6778889999885321
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 171 TKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 171 ~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+...+.+.+.+...+..-+.+.+...+.+ +-.|++ -+.++.++.+.+.+.
T Consensus 145 ---------------------~~~~p~~~~~~~~~~ir~i~~~l~~~a~~~~-i~~i~~-~~~~~~~~~~~~~~~ 196 (197)
T PRK12339 145 ---------------------HKNSPGKRLAEHLPEYRTIMDYSIADARGYN-IKVIDT-DNYREARNPLLDPIS 196 (197)
T ss_pred ---------------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHcC-CCeecC-ccHHHHHHHHHHHhc
Confidence 1122334444455555554455555544433 333443 567777777776543
No 88
>PRK07261 topology modulation protein; Provisional
Probab=99.33 E-value=5.1e-12 Score=98.18 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=70.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|+|+|||||||+++.|++.+++++++.|.+.... + ....+.+.....+...+. +..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~----~~~ 60 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLL----KHD 60 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHh----CCC
Confidence 47999999999999999999999999999987653210 0 011122333444444432 234
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
||+||..........+. ..|.+|+|++|...+..|+.+|..
T Consensus 61 wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 61 WIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred EEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 99999876544333332 358999999999999999988854
No 89
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.32 E-value=2.6e-11 Score=92.43 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=109.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH-----------HH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-----------VG 98 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~ 98 (246)
.++.+|++.|..+|||||+|..|.+.+. +..+- ..+.+.....+.+|+.+..++.+...+++..+ ..
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4678999999999999999999999883 22222 33334455678899999999998877777654 22
Q ss_pred HHHHHHcCCCCCcceEecCCCCC-HHHH--H--HHHHHHHh--cCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccc
Q 025937 99 IIDEAMKKPSCQKGFILDGFPRT-EVQA--Q--KLDEMLEK--QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 171 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid~~~~~-~~~~--~--~l~~~l~~--~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~ 171 (246)
.+.+.+. .+-.+|+|.|... +... + .+++..+. -..+||++++|+++++++.+| .+++.
T Consensus 81 ~i~e~l~---kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~---------- 146 (208)
T KOG3327|consen 81 LIKEKLA---KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGE---------- 146 (208)
T ss_pred HHHHHHh---cCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCcch----------
Confidence 3333332 2334677776432 2111 1 11111110 126999999999999995544 43321
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 172 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 172 ~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.......++.+...++.... -.+...++.+|++.+.++|.+.|..+++
T Consensus 147 ---------------------Erye~v~fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e 194 (208)
T KOG3327|consen 147 ---------------------ERYETVAFQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVE 194 (208)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHH
Confidence 12234555666555444332 1123468899999999999999976553
No 90
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.32 E-value=4.9e-11 Score=93.01 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=92.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHH-------HHHHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGIIDEAM 104 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~l~~~l 104 (246)
+.+++|.|++||||||+++.|+..++..+++.+++.... ..+. +..|....+. .+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 357899999999999999999999998888876642210 0111 1112111111 1111111111
Q ss_pred cCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCC
Q 025937 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 184 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~ 184 (246)
. ....|+|+..+... .... .+.+.+..+ .+|||++|++++.+|+.+|..+
T Consensus 73 ~--~~~~g~iv~s~~~~-~~R~----~~r~~~~~~-~~v~l~a~~~~l~~Rl~~R~~~---------------------- 122 (176)
T PRK09825 73 K--KNETGFIVCSSLKK-QYRD----ILRKSSPNV-HFLWLDGDYETILARMQRRAGH---------------------- 122 (176)
T ss_pred h--cCCCEEEEEEecCH-HHHH----HHHhhCCCE-EEEEEeCCHHHHHHHHhcccCC----------------------
Confidence 1 12467777655322 2223 223344444 8999999999999999998521
Q ss_pred CCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 185 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 185 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.+..++..++. .......++.||++.+++++.+.+...+.
T Consensus 123 ---------~~~~~vl~~Q~~~~e~-------~~~~e~~~~~~d~~~~~~~~~~~~~~~~~ 167 (176)
T PRK09825 123 ---------FMPPDLLQSQFDALER-------PCADEHDIARIDVNHDIENVTEQCRQAVQ 167 (176)
T ss_pred ---------CCCHHHHHHHHHHcCC-------CCCCcCCeEEEECCCCHHHHHHHHHHHHH
Confidence 1134455444443331 11112248899999998888887776653
No 91
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.31 E-value=9.3e-12 Score=97.91 Aligned_cols=161 Identities=21% Similarity=0.235 Sum_probs=97.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc--CcceeehHHHHHHHHHcc----Cch----HHHHHHHHHcCCCcCHHH------
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAK----TPL----GIKAKEAMDKGELVSDDL------ 95 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~--~~~~i~~~~l~~~~~~~~----~~~----g~~~~~~~~~~~~~~~~~------ 95 (246)
++.|+|.||+||||+|+++.|.+.+ ++.++ ....-|. ..++ ..+ ...+...++.|..++...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~-~~~TtR~-~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~Y 79 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERV-VSHTTRP-PRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYY 79 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEee-eeecCCC-CCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCc
Confidence 4689999999999999999999986 23221 1112221 1111 111 256667777766544321
Q ss_pred --HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe-cCHHHHHHHHhcCcCCCCCCcccccc
Q 025937 96 --VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA-IDDAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 96 --~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~-~~~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
....+...+. .++.+|+|..+....+.+. ....| .+|+|. .+.+.+.+|+..|.
T Consensus 80 Gt~~~~i~~~~~---~~~~~ild~~~~~~~~l~~-------~~~~~-~vIfi~~~s~~~l~~rl~~R~------------ 136 (184)
T smart00072 80 GTSKETIRQVAE---QGKHCLLDIDPQGVKQLRK-------AQLYP-IVIFIAPPSSEELERRLRGRG------------ 136 (184)
T ss_pred ccCHHHHHHHHH---cCCeEEEEECHHHHHHHHH-------hCCCc-EEEEEeCcCHHHHHHHHHhcC------------
Confidence 1223444432 2567899987766655442 22445 788897 56677999998763
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+++.+.+.+|+........ .+.. -.++.++. +.++.++++.++|+
T Consensus 137 ---------------------~~~~~~i~~rl~~a~~~~~----~~~~-fd~~I~n~--~l~~~~~~l~~~i~ 181 (184)
T smart00072 137 ---------------------TETAERIQKRLAAAQKEAQ----EYHL-FDYVIVND--DLEDAYEELKEILE 181 (184)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHh----hhcc-CCEEEECc--CHHHHHHHHHHHHH
Confidence 4466888888886544332 2211 12334443 68889999988875
No 92
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.29 E-value=6.3e-11 Score=94.82 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcce-eehHHHHHHHHHccCc--------hHHHHHHHHHcCCCcCHHH----
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDDL---- 95 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~-i~~~~l~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~---- 95 (246)
+..+.+|+|+||+||||||+++.|.+.. ..+ +.....-+. ..++.. .-..+...+..+..+....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~-~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRP-KRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCC-CCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 5677899999999999999999998642 211 111011100 000000 0123333444343322100
Q ss_pred ----HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC--HHHHHHHHhcCcCCCCCCccc
Q 025937 96 ----VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID--DAVLEERITGRWIHPSSGRTY 169 (246)
Q Consensus 96 ----~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~--~e~~~~Rl~~r~~~~~~g~~~ 169 (246)
....+...+. .+..+|++.-. .-...+. + ..|+.++++.+| .+++.+|+.+|.
T Consensus 88 ~YGt~~~~i~~~~~---~g~~vi~~~~~---~g~~~l~----~--~~pd~~~if~~pps~e~l~~Rl~~R~--------- 146 (206)
T PRK14738 88 YYGVPKAPVRQALA---SGRDVIVKVDV---QGAASIK----R--LVPEAVFIFLAPPSMDELTRRLELRR--------- 146 (206)
T ss_pred eecCCHHHHHHHHH---cCCcEEEEcCH---HHHHHHH----H--hCCCeEEEEEeCCCHHHHHHHHHHcC---------
Confidence 0112222222 13345665432 2222222 2 246777766664 568899998874
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 170 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 170 ~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+++.+.+..|+..+........ ...++.||++.++++++++|.+.|.
T Consensus 147 ------------------------~~~~~~~~~Rl~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~ 193 (206)
T PRK14738 147 ------------------------TESPEELERRLATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIIS 193 (206)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHH
Confidence 2345678888877655433211 1257889999999999999998874
No 93
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.28 E-value=2.8e-10 Score=89.33 Aligned_cols=39 Identities=36% Similarity=0.538 Sum_probs=35.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
.+.|.|-||.||||||+|+.||++||+.+++.+.+.|..
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 379999999999999999999999999999998887763
No 94
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=1.5e-10 Score=88.92 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=95.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCch--------HHHHHHHHHcCCCcCHHHH------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL--------GIKAKEAMDKGELVSDDLV------ 96 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~------ 96 (246)
++.+++|+||+|+||||+++.|-+..+ ..+|++..-|+ ++++..- ...+++++..+..+....+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRK-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCC-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 678999999999999999999999984 44666555554 2333322 3567777777655432211
Q ss_pred --HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEE-ecCHHHHHHHHhcCcCCCCCCccccccC
Q 025937 97 --VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF-AIDDAVLEERITGRWIHPSSGRTYHTKF 173 (246)
Q Consensus 97 --~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L-~~~~e~~~~Rl~~r~~~~~~g~~~~~~~ 173 (246)
...++..+. .+.-+|+|-- ..=+..+. +.-+.. ..|++ -.+.+++.+|+.+|.
T Consensus 81 T~~~~ve~~~~---~G~~vildId---~qGa~qvk----~~~p~~-v~IFi~pPs~eeL~~RL~~Rg------------- 136 (191)
T COG0194 81 TSREPVEQALA---EGKDVILDID---VQGALQVK----KKMPNA-VSIFILPPSLEELERRLKGRG------------- 136 (191)
T ss_pred CcHHHHHHHHh---cCCeEEEEEe---hHHHHHHH----HhCCCe-EEEEEcCCCHHHHHHHHHccC-------------
Confidence 122222221 1333444421 11111111 111233 33444 445678888888874
Q ss_pred CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 174 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 174 ~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.++.+.+.+|+...+.+.....+ | .++++|. +.+..++.|..++
T Consensus 137 --------------------tds~e~I~~Rl~~a~~Ei~~~~~-f----dyvivNd--d~e~a~~~l~~ii 180 (191)
T COG0194 137 --------------------TDSEEVIARRLENAKKEISHADE-F----DYVIVND--DLEKALEELKSII 180 (191)
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHh-C----CEEEECc--cHHHHHHHHHHHH
Confidence 67889999999998887765554 3 4666664 4666777766654
No 95
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.25 E-value=1.9e-10 Score=89.52 Aligned_cols=115 Identities=20% Similarity=0.159 Sum_probs=64.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc---CcceeehHH-HHHHHHHccCch---HHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGD-MLRAAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~-l~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (246)
++|+|+|+|||||||+|+.|++.+ ++..++.+. ..+-... +..+ .+..++.+. ....+++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~-DEslpi~ke~yres~~-------ks~~rlldSalk 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILW-DESLPILKEVYRESFL-------KSVERLLDSALK 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheec-ccccchHHHHHHHHHH-------HHHHHHHHHHhc
Confidence 589999999999999999999998 333333322 2221111 1111 112222221 123345555543
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+.-+|+|...--......|.....++.... .+|++.+|.+++.+|-..|.
T Consensus 74 ----n~~VIvDdtNYyksmRrqL~ceak~~~tt~-ciIyl~~plDtc~rrN~erg 123 (261)
T COG4088 74 ----NYLVIVDDTNYYKSMRRQLACEAKERKTTW-CIIYLRTPLDTCLRRNRERG 123 (261)
T ss_pred ----ceEEEEecccHHHHHHHHHHHHHHhcCCce-EEEEEccCHHHHHHhhccCC
Confidence 233455654433333333333344444444 89999999999999986653
No 96
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.24 E-value=1.8e-10 Score=88.82 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=85.1
Q ss_pred ECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHH---HHHHHHHHHHcC--CCCCcc
Q 025937 38 VGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD---LVVGIIDEAMKK--PSCQKG 112 (246)
Q Consensus 38 ~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~l~~~l~~--~~~~~g 112 (246)
+|++||||||+++.|++.+|..+++.|.+..... +. ....|....+. .....+...... ...+..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IE-KMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hc-cccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 5999999999999999999999998854321100 00 00011111110 001111111100 112334
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
+|+..+. ...... .+...+..+ .+|+|++|++++.+|+..|..+.
T Consensus 71 viv~s~~-~~~~r~----~~~~~~~~~-~~v~l~a~~~~l~~Rl~~R~~~~----------------------------- 115 (163)
T PRK11545 71 LIVCSAL-KKHYRD----LLREGNPNL-SFIYLKGDFDVIESRLKARKGHF----------------------------- 115 (163)
T ss_pred EEEEecc-hHHHHH----HHHccCCCE-EEEEEECCHHHHHHHHHhccCCC-----------------------------
Confidence 4554332 222222 333344444 89999999999999999985210
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+.+.+...+..++. .-.....++.||++.+++++...+...+.
T Consensus 116 --a~~~vl~~Q~~~~ep-------~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 116 --FKTQMLVTQFETLQE-------PGADETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred --CCHHHHHHHHHHcCC-------CCCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 133445444433321 11111247889999999999999888775
No 97
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.23 E-value=4.6e-10 Score=87.77 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=85.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcc---eeehHHHHHHHHHccCc----hHHHHHHHHHcCCCcC--------HHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAAKTP----LGIKAKEAMDKGELVS--------DDLVV 97 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~---~i~~~~l~~~~~~~~~~----~g~~~~~~~~~~~~~~--------~~~~~ 97 (246)
.+|+|.|++||||||+++.|+..++.. .+....+-+.....+.. ....+......+.... .....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 478999999999999999999987532 11110110110000000 0012222222221100 00001
Q ss_pred HHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCC
Q 025937 98 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK 177 (246)
Q Consensus 98 ~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~ 177 (246)
.+...+ ..+..+|+++... ....+. ..... ..+|||+++.+++.+|+..|.
T Consensus 82 -~i~~~~---~~g~~vv~~g~~~---~~~~~~----~~~~~-~~~i~l~~~~~~~~~Rl~~R~----------------- 132 (179)
T TIGR02322 82 -EIDQWL---EAGDVVVVNGSRA---VLPEAR----QRYPN-LLVVNITASPDVLAQRLAARG----------------- 132 (179)
T ss_pred -HHHHHH---hcCCEEEEECCHH---HHHHHH----HHCCC-cEEEEEECCHHHHHHHHHHcC-----------------
Confidence 122222 1234567776521 112111 11223 378999999999999999773
Q ss_pred CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 178 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 178 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.+..++..+..... ....++.++++.++++++++|.+.+.
T Consensus 133 ----------------~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 133 ----------------RESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred ----------------CCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 1134566667653322111 12346668888999999999999875
No 98
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.23 E-value=5.3e-10 Score=99.90 Aligned_cols=41 Identities=34% Similarity=0.493 Sum_probs=37.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~ 69 (246)
..++++|.|.||+||||||+++.|+++||+.+++.+.+.|.
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~ 321 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehH
Confidence 35778999999999999999999999999999999888776
No 99
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.23 E-value=4.2e-11 Score=90.37 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=63.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcce
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~ 113 (246)
+|+|.|+|||||||+|+.|++.+|+++++.+.+...... ...... .. ...+...+...+........|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~------~~~~~~-~~-----~~~i~~~l~~~~~~~~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG------KLASEV-AA-----IPEVRKALDERQRELAKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH------HHHHHh-cc-----cHhHHHHHHHHHHHHhhCCCE
Confidence 489999999999999999999999999999743222111 111100 00 001111122222222224569
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
|++|..... .+ ....+++|+|++|++...+|+..|
T Consensus 69 Vidg~~~~~--------~~---~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 69 VLEGRDIGT--------VV---FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EEEeeeeee--------EE---cCCCCEEEEEECCHHHHHHHHHHH
Confidence 999864321 00 134689999999999999999875
No 100
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.22 E-value=2.3e-10 Score=91.80 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDML 67 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l~ 67 (246)
+.++.+|.|.|++||||||+++.|++.++ +.+++.|+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 56788999999999999999999999983 4556776654
No 101
>PRK06547 hypothetical protein; Provisional
Probab=99.22 E-value=6.7e-11 Score=91.77 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=70.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHH-HHHcCCCc--CHHHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE-AMDKGELV--SDDLVVGIIDEAM 104 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~-~~~~~~~~--~~~~~~~~l~~~l 104 (246)
...++++|+|.|++||||||+++.|++.++..+++.|++....-. -......+.. .+..|... +.+........ .
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~-~ 88 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGD-W 88 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCC-c
Confidence 467788999999999999999999999999999999877542100 0111111222 22222211 00000000000 0
Q ss_pred cCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
........+|++|....... +...+.+ + ...+.|||++|.++..+|+..|.
T Consensus 89 ~~l~~~~vVIvEG~~al~~~---~r~~~d~-~-g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 89 VSVEPGRRLIIEGVGSLTAA---NVALASL-L-GEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred EEeCCCCeEEEEehhhccHH---HHHHhcc-C-CCEEEEEEECCHHHHHHHHHhcC
Confidence 01112345777876333222 2222211 1 11289999999999999999883
No 102
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.22 E-value=4.1e-10 Score=100.82 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=65.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (246)
|.|+|+|+|||||||+++.|++.+|++++++|+++.+.. |..+.+.+.. |.....+...+.+.+... ..
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~----~~ 70 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVE----RD 70 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhh----cC
Confidence 479999999999999999999999999999998887631 2222222221 221112222233332221 11
Q ss_pred ceEe-cCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 112 GFIL-DGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 112 g~ii-d~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
..|+ .|. .......+.+ .+ ..+|||+++++++.+|+..+
T Consensus 71 ~~Vis~Gggvv~~~~~r~~l----~~-----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 71 NVVVATGGGVVIDPENRELL----KK-----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred CEEEECCCccccChHHHHHH----hc-----CeEEEEECCHHHHHHHhccC
Confidence 2333 222 1222333322 21 35899999999999999764
No 103
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=8.2e-10 Score=83.12 Aligned_cols=175 Identities=18% Similarity=0.195 Sum_probs=96.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHH---HHcCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE---AMKKP 107 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~---~l~~~ 107 (246)
++.++++|.||+||||+++.+.+.+ ++..++.++++-+......- -..++.+. .+|.+....+... ++...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999 88889999987663332110 11222232 2233332222222 22221
Q ss_pred CCCcceEecCCCCCHHHHHH---HH-HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCC
Q 025937 108 SCQKGFILDGFPRTEVQAQK---LD-EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~---l~-~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~ 183 (246)
.. -.|+|.......-..+ |. +.+.. ..||.+|.|+.+++++..|-.+...
T Consensus 79 ~~--~iivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D~~---------------------- 132 (189)
T COG2019 79 AL--EIIVDTHATIKTPAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRDSR---------------------- 132 (189)
T ss_pred hh--ceEEeccceecCCCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhcccc----------------------
Confidence 11 1566654221110000 00 11221 5799999999999999888654311
Q ss_pred CCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEE-eCCCChhHHHHHHHHHhc
Q 025937 184 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~ev~~~i~~~l~ 245 (246)
-.|+-++.+.+...++.-+.......-... ..+.+| |.++.+++-...|...|+
T Consensus 133 ------r~Rd~es~e~i~eHqe~nR~aA~a~A~~~g--atVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 133 ------RDRDVESVEEIREHQEMNRAAAMAYAILLG--ATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred ------cccccccHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 124455667776655433322211111121 133333 456788888888877664
No 104
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.19 E-value=1.4e-09 Score=84.85 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=65.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcc--eeehHHHHHHHHHccCchHHHHHHHHH-cC--CCcCHH---HHHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMD-KG--ELVSDD---LVVGIIDEA 103 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~--~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~--~~~~~~---~~~~~l~~~ 103 (246)
.++|+|.|+|||||||+++.|++.++.. +++.|++... +....... ...+. .+ ...+.. .....+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhccc---ccccccCccCCcccchHHHHHHHHHHHH
Confidence 4589999999999999999999998654 4567655433 21100000 00000 00 001111 111222122
Q ss_pred Hc-CCCCCcceEecCCCC-CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 104 MK-KPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 104 l~-~~~~~~g~iid~~~~-~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+. ....+..+|+|.... .....+.+..+ .+ .+-..|+|.||.+++.+|+..|.
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~~-~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSF---VG-LDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHh---cC-CCEEEEEEECCHHHHHHHHHhcC
Confidence 21 123356688886433 22222333222 22 23388999999999999999874
No 105
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.18 E-value=7.2e-10 Score=87.17 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=93.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCch--------HHHHHHHHHcCCCcCHHH------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL--------GIKAKEAMDKGELVSDDL------ 95 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~------ 95 (246)
.++++|+|.||+||||||+++.|.+.+.-.++++...-|. ..+++.- -..+...+..|..+....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRA-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCC-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 3678999999999999999999999874333444333332 1222111 134555555554432211
Q ss_pred --HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCcccccc
Q 025937 96 --VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 96 --~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
....+...+. .++.+|+|.-+....+ +... . +..-.+|++.+| .+++.+|+..|.
T Consensus 81 Gt~~~~i~~~~~---~g~~~i~d~~~~g~~~---l~~~---~-~~~~~~Ifi~pps~e~l~~RL~~R~------------ 138 (186)
T PRK14737 81 GTPKAFIEDAFK---EGRSAIMDIDVQGAKI---IKEK---F-PERIVTIFIEPPSEEEWEERLIHRG------------ 138 (186)
T ss_pred cCcHHHHHHHHH---cCCeEEEEcCHHHHHH---HHHh---C-CCCeEEEEEECCCHHHHHHHHHhcC------------
Confidence 1222222222 2455677754333222 2221 1 111157888874 688999998773
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.++.|+.....+.. +.....++.+| + +.++...++.++|.
T Consensus 139 ---------------------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~vI~N-~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 139 ---------------------TDSEESIEKRIENGIIELD-----EANEFDYKIIN-D-DLEDAIADLEAIIC 183 (186)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHh-----hhccCCEEEEC-c-CHHHHHHHHHHHHh
Confidence 3466788888886443322 11212344444 4 79999999998874
No 106
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.18 E-value=9.4e-10 Score=100.19 Aligned_cols=131 Identities=18% Similarity=0.145 Sum_probs=76.3
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc------ceeehHHHHHHHHHccCchHHHHHHHHHc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL------CHLATGDMLRAAVAAKTPLGIKAKEAMDK 87 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~------~~i~~~~l~~~~~~~~~~~g~~~~~~~~~ 87 (246)
..++..+..+++.--.+.+..|+|+|+|||||||+++.|++.++. .+++. |.+++.+.++..+...-+.
T Consensus 374 rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~~f~~~er~---- 448 (568)
T PRK05537 374 FPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSELGFSKEDRD---- 448 (568)
T ss_pred HHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCCCCCHHHHH----
Confidence 345555666666545567779999999999999999999999985 77777 4556544322111111000
Q ss_pred CCCcCHHHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025937 88 GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
.....+...+-.....+.++|++...........+.+++...+ .+ .+|||++|.+++.+|..
T Consensus 449 ------~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~f-ivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 449 ------LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GF-IEVHVATPLEVCEQRDR 510 (568)
T ss_pred ------HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CE-EEEEEcCCHHHHHHhcc
Confidence 0011111011111123556777754332333344444554443 22 68999999999999963
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.17 E-value=7.7e-12 Score=91.40 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=31.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~ 67 (246)
+|+|.|+|||||||+|+.|++.+|++++++|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999953
No 108
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.14 E-value=1.8e-09 Score=84.22 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=61.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 104 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (246)
+++.+|+|.|+|||||||+++.|++.++ ..+++.+ .+++.+.... ....-... .......+...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d-~~r~~~~~~~-~~~~~~~~--------~~~~~~~l~~~l 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD-ELREILGHYG-YDKQSRIE--------MALKRAKLAKFL 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH-HHHhhcCCCC-CCHHHHHH--------HHHHHHHHHHHH
Confidence 5677999999999999999999999885 5566654 4444322110 00000000 000111122222
Q ss_pred cCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
. ..+..+|+|+... ...... ..... ..+..+|||++|++++.+|+.+
T Consensus 75 ~--~~g~~VI~~~~~~-~~~~~~---~~~~~-~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 75 A--DQGMIVIVTTISM-FDEIYA---YNRKH-LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred H--hCCCEEEEEeCCc-HHHHHH---HHHhh-cCCeEEEEEeCCHHHHHHhchh
Confidence 1 2234566676532 211111 11111 2345899999999999999753
No 109
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.13 E-value=2e-09 Score=86.05 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=89.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCc--------hHHHHHHHHHcCCCcCH-----HH-
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSD-----DL- 95 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~--------~g~~~~~~~~~~~~~~~-----~~- 95 (246)
+++.+|+|.||+||||||+++.|+..++..++......++. ..+.. ....+...+..+..+.. ..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p-~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP-RPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC-CCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 45679999999999999999999998763333332222221 11100 01223333332222110 00
Q ss_pred --HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccC
Q 025937 96 --VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 173 (246)
Q Consensus 96 --~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~ 173 (246)
....+...+.. +..+|+|.-+ .....+.+ .. ..+-.++++.++.+++.+|+..|.
T Consensus 82 ~~~~~~i~~~l~~---g~~vi~dl~~---~g~~~l~~---~~-~~~~~I~i~~~s~~~l~~Rl~~R~------------- 138 (205)
T PRK00300 82 GTPRSPVEEALAA---GKDVLLEIDW---QGARQVKK---KM-PDAVSIFILPPSLEELERRLRGRG------------- 138 (205)
T ss_pred cCcHHHHHHHHHc---CCeEEEeCCH---HHHHHHHH---hC-CCcEEEEEECcCHHHHHHHHHhcC-------------
Confidence 01222222221 3345556432 22222222 12 233235555677899999998873
Q ss_pred CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 174 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 174 ~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.++.+.+++|+..+....... ... .++.+| .+.++++.+|...++
T Consensus 139 --------------------~~~~~~i~~rl~~~~~~~~~~----~~~-d~vi~n--~~~e~~~~~l~~il~ 183 (205)
T PRK00300 139 --------------------TDSEEVIARRLAKAREEIAHA----SEY-DYVIVN--DDLDTALEELKAIIR 183 (205)
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHhH----HhC-CEEEEC--CCHHHHHHHHHHHHH
Confidence 346688899998887654332 222 244444 379999999988874
No 110
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.12 E-value=3.7e-09 Score=85.15 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=35.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
+++|.|.||+||||||+++.|++++++.+++.+++.+..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 468999999999999999999999999999998887654
No 111
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.11 E-value=1e-09 Score=98.43 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=82.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (246)
.+.++.+|++.|+|||||||+++.++...|+.+++.|.+- . ...........+
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L--- 417 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERAL--- 417 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHH---
Confidence 3567889999999999999999999999999999997641 1 011122233333
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
..+..+|+|.......+...+.++....|..+ .+|++++|.+++.+|+..|..
T Consensus 418 ~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v-~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 418 DQGKRCAIDNTNPDAASRAKFLQCARAAGIPC-RCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred hCCCcEEEECCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHhhcc
Confidence 33567999999888888888888888887766 899999999999999988853
No 112
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.10 E-value=3.1e-09 Score=86.15 Aligned_cols=38 Identities=39% Similarity=0.590 Sum_probs=35.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~ 69 (246)
+++|.|.|++||||||+++.|++++|+.+++.+.+.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 47899999999999999999999999999999988775
No 113
>PRK06696 uridine kinase; Validated
Probab=99.08 E-value=1.1e-09 Score=88.83 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=39.9
Q ss_pred hHHHHHHHHhh-cCCCCCeEEEEECCCCCChhHHHHHHHhHc---Ccce--eehHHHHH
Q 025937 16 DLMTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY---CLCH--LATGDMLR 68 (246)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~~~~--i~~~~l~~ 68 (246)
+...++...+. ..+..+.+|.|.|++||||||+|+.|++.+ |..+ +++|++..
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 44555555554 356788999999999999999999999999 5444 45776654
No 114
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.07 E-value=2.2e-08 Score=83.77 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=56.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-CCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSC 109 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~ 109 (246)
...+|+|+|++||||||+++.|.+ .|+.+++.-. ..++..++...... ...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~---------------------------~~L~~~l~~~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYYCVDNLP---------------------------PSLLPKLVELLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcC---------------------------HHHHHHHHHHHHhcCCCC
Confidence 345899999999999999999964 6887764411 11111111111111 111
Q ss_pred CcceEecCCCCCH-HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 110 QKGFILDGFPRTE-VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 110 ~~g~iid~~~~~~-~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
.-.+++|-..... .........+.+.|..+ .+|||+++.+++.+|+..
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~-~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERGIDV-RVLFLDASDEVLIRRYSE 105 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcCCcE-EEEEEECCHHHHHHHHhh
Confidence 1234555432221 12222223344444433 789999999999999975
No 115
>PRK12338 hypothetical protein; Provisional
Probab=99.07 E-value=1.3e-08 Score=85.69 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=38.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~ 73 (246)
+|.+|++.|+|||||||+|+.||+++|+.++..+|.+++.+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 5679999999999999999999999999998777888886664
No 116
>COG0645 Predicted kinase [General function prediction only]
Probab=99.06 E-value=1e-08 Score=77.68 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=81.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCH---HHHHHHHHHHHcCCCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD---DLVVGIIDEAMKKPSC 109 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~ 109 (246)
.++++.|.||+||||+++.|++.+|..+|.. |.+++.+.. .+....- ..|-+-+. .....++.....-...
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g-~p~~~r~----~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFG-VPEETRG----PAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcC-CcccccC----CCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999 556665654 1100000 01111111 0111222222222234
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
+..+|+|+......+...........+..+ ..|+++++.+++..|+..|..
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~-~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAF-VLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCce-EEEEcCCcHHHHHHHHHHhCC
Confidence 567899987777777776666666666666 889999999999999999863
No 117
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.05 E-value=9.5e-09 Score=95.74 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=37.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
.+.++|.+.||+||||||+++.|+++||+.+++.+.+.|..
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 44678999999999999999999999999999999888764
No 118
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.05 E-value=4.4e-09 Score=82.26 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=89.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCc--------hHHHHHHHHHcCCCcCHH--------HH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDD--------LV 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~--------~~ 96 (246)
.+|+|.||+||||||+++.|++.++..++......++.. .+.. ....+...+..+..+... ..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 589999999999999999999987554444333222211 1100 011233333333322110 11
Q ss_pred HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCC
Q 025937 97 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 176 (246)
Q Consensus 97 ~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp 176 (246)
...+...+.. +..+|+|.. ......+.+. . ..+..++++..+.+.+.+|+..|.
T Consensus 81 ~~~i~~~~~~---g~~vi~d~~---~~~~~~~~~~---~-~~~~~i~~~~~~~e~~~~Rl~~r~---------------- 134 (180)
T TIGR03263 81 KSPVEEALAA---GKDVLLEID---VQGARQVKKK---F-PDAVSIFILPPSLEELERRLRKRG---------------- 134 (180)
T ss_pred HHHHHHHHHC---CCeEEEECC---HHHHHHHHHh---C-CCcEEEEEECCCHHHHHHHHHHcC----------------
Confidence 2223333322 445677743 2222222222 2 334355566777899999998763
Q ss_pred CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 177 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 177 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.++.+.++.|+..+...... ..+ ..++.+|. +.++..+.+.+.+.
T Consensus 135 -----------------~~~~~~i~~rl~~~~~~~~~-~~~----~d~~i~n~--~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 135 -----------------TDSEEVIERRLAKAKKEIAH-ADE----FDYVIVND--DLEKAVEELKSIIL 179 (180)
T ss_pred -----------------CCCHHHHHHHHHHHHHHHhc-ccc----CcEEEECC--CHHHHHHHHHHHHh
Confidence 34567888888876543221 111 23555553 68999999998875
No 119
>PRK07667 uridine kinase; Provisional
Probab=99.04 E-value=2.1e-09 Score=85.16 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=36.8
Q ss_pred HHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHH
Q 025937 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRA 69 (246)
Q Consensus 23 ~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~ 69 (246)
+.+......+.+|.|.|++||||||+|+.|++.++ ...++.|+....
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 44444455558999999999999999999999873 457888886654
No 120
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.02 E-value=1.4e-09 Score=84.12 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=65.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC--cceeehHHHHHHHHHccC----c---------hHHHHHHHHHcCCCcCHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKT----P---------LGIKAKEAMDKGELVSDDLVV 97 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~~~l~~~~~~~~~----~---------~g~~~~~~~~~~~~~~~~~~~ 97 (246)
.+|+|.|++.|||||+++.|++.+. +.++++|.++........ . .+..... +.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------~~ 69 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRR------------LY 69 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHH------------HH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHH------------HH
Confidence 5899999999999999999999995 467788766654222110 0 0111111 11
Q ss_pred HHHHHHHc-CCCCCcceEecCCCCCHHH-HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 98 GIIDEAMK-KPSCQKGFILDGFPRTEVQ-AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 98 ~~l~~~l~-~~~~~~g~iid~~~~~~~~-~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
..+...+. ....+..+|+|........ .+.+.+.|. ..+.+.|-+.||.+++.+|-..|.
T Consensus 70 ~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~---~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 70 AAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA---GLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT---TS-EEEEEEE--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC---CCceEEEEEECCHHHHHHHHHhcC
Confidence 11111111 1234677888876555443 454545553 345588999999999999988875
No 121
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.01 E-value=5.7e-09 Score=81.34 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=59.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH--HHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV--VGIIDE 102 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~l~~ 102 (246)
+++.+|+|.|+|||||||+++.|+..+. +.+++.|.+ ++.+..+......-+ .... ...+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~a~ 70 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR----------DTNIRRIGFVAN 70 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH----------HHHHHHHHHHHH
Confidence 4567999999999999999999999872 566777544 443321111000000 0000 011111
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
.+. ..+..+++++........+.+... ...+ .+|||++|.+++.+|.
T Consensus 71 ~~~--~~g~~vi~~~~~~~~~~~~~l~~~----~~~~-~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 71 LLT--RHGVIVLVSAISPYRETREEVRAN----IGNF-LEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHH--hCCCEEEEecCCCCHHHHHHHHhh----cCCe-EEEEEcCCHHHHHHhC
Confidence 111 123345556542223333333322 2233 7899999999999994
No 122
>COG4639 Predicted kinase [General function prediction only]
Probab=99.00 E-value=9.6e-09 Score=76.57 Aligned_cols=115 Identities=22% Similarity=0.193 Sum_probs=77.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-CCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 110 (246)
+.++++.|+|||||||+++.... ....++++++=+. + |.........+ .+..+.+++..++.+ ...+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~--~~~~lsld~~r~~-l------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl~~G 69 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL--QNYVLSLDDLRLL-L------GVSASKENSQK---NDELVWDILYKQLEQRLRRG 69 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC--CcceecHHHHHHH-h------hhchhhhhccc---cHHHHHHHHHHHHHHHHHcC
Confidence 45899999999999999986432 5677888665332 1 11111111111 133344444444333 2346
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
+-.|+|.+....+..+.+..+...++..+ ..|+|+.|.+.+.+|.+.|
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence 78999999888888888888888888777 7799999999999998754
No 123
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.99 E-value=8e-08 Score=79.23 Aligned_cols=148 Identities=20% Similarity=0.300 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC-CCC-
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-SCQ- 110 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~- 110 (246)
.+|+|+|.+||||||..+.| +.+|+.+++- +|..++..++....... ...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 47899999999999999998 5589888753 12222323332211111 112
Q ss_pred cceEecCCCCCH--HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc-CcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 111 KGFILDGFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG-RWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 111 ~g~iid~~~~~~--~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~-r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
-.+.+|--.... .....+.+ +.+.+..+ .+++|+++++++.+|... |+.||...
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~-l~~~~~~~-~ilFLdA~d~~LirRy~eTRR~HPL~~--------------------- 110 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDE-LRKKGIDV-RILFLDASDEVLIRRYSETRRRHPLSS--------------------- 110 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHH-HHhcCCce-EEEEEECChHHHHHHHHhccCCCCCCC---------------------
Confidence 235555432221 11122222 23345555 899999999999999855 77676432
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeC-CCChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHA-EKPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~-~~~~~ev~~~i~~~l~ 245 (246)
.....+. |..-++...++++..+ ++||+ +.++.++.+.|.+.+.
T Consensus 111 -----~~~~le~----I~~Er~~L~~lr~~Ad-----~vIDTs~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 111 -----DGSLLEA----IEKERELLEPLRERAD-----LVIDTSNLSVHQLRERIRERFG 155 (284)
T ss_pred -----CCCcHHH----HHHHHHHHHHHHHhCC-----EEEECCCCCHHHHHHHHHHHhc
Confidence 1222233 4444555666666543 35664 5899999999987663
No 124
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.96 E-value=1.5e-08 Score=79.57 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=64.8
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE 102 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 102 (246)
..+++.+|+|.|++||||||+++.|+..+ | ..+++.+ .+++.+.....+...-. ......+...
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~~----------~~~~~~~~~~ 82 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEEDR----------KENIRRIGEV 82 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHHH----------HHHHHHHHHH
Confidence 35778899999999999999999999987 2 4556654 44443322111100000 0011111110
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 155 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~R 155 (246)
.......+..+|+|...........+...+.. .+-.+|||++|.+++.+|
T Consensus 83 ~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~---~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 83 AKLFVRNGIIVITSFISPYRADRQMVRELIEK---GEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHHHhCcC---CCeEEEEEeCCHHHHHHh
Confidence 11112335667777654445555545444322 133789999999999999
No 125
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.94 E-value=4.2e-08 Score=74.75 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc---Cc-ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---CL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 103 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~~-~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (246)
..+++..|||+|.+||||||+|..|.++| |. .++--+|-+|..+..+=.+...-+. .+-..+..+...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~--------eniRRvaevAkl 90 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRI--------ENIRRVAEVAKL 90 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHH--------HHHHHHHHHHHH
Confidence 47888999999999999999999999998 44 2333346777655532111111000 000001111111
Q ss_pred HcCCCCCcceEecCCCCCHHHHHH-HHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQK-LDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~-l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
+.. ...++|..+.......+. ..+.+. . ..+ +-||+++|.+++.+|=
T Consensus 91 l~d---aG~iviva~ISP~r~~R~~aR~~~~-~-~~F-iEVyV~~pl~vce~RD 138 (197)
T COG0529 91 LAD---AGLIVIVAFISPYREDRQMARELLG-E-GEF-IEVYVDTPLEVCERRD 138 (197)
T ss_pred HHH---CCeEEEEEeeCccHHHHHHHHHHhC-c-Cce-EEEEeCCCHHHHHhcC
Confidence 211 233555666555443333 223322 1 245 7899999999999983
No 126
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.94 E-value=8.5e-09 Score=82.59 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDM 66 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l 66 (246)
.++++.+|.|.|++||||||+++.|+..++ ..+++.|+.
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 356778999999999999999999998875 455666554
No 127
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.93 E-value=1.8e-08 Score=80.17 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=62.1
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE 102 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 102 (246)
.+.++.+|+|+|++||||||+++.|+..+ +..+++.+++- ..+.....+. ... .......+...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~-------~~~---~~~~~~~l~~~ 88 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS-------DAD---RKENIRRVGEV 88 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC-------ccc---HHHHHHHHHHH
Confidence 45778899999999999999999999986 34566654433 3221100000 000 01111111111
Q ss_pred HHcCCCCCcceEecCCCC-CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025937 103 AMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 155 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~-~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~R 155 (246)
+ .........++..+.. .......+.+.+... .-++|||++|.+++.+|
T Consensus 89 a-~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~---~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 89 A-KLMVDAGLVVLTAFISPHRAERQMVRERLGEG---EFIEVFVDTPLAICEAR 138 (198)
T ss_pred H-HHHhhCCCEEEEEeCCCCHHHHHHHHHHcccC---CEEEEEEcCCHHHHHhc
Confidence 1 1111122344555544 345555555554332 22479999999999999
No 128
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.92 E-value=4.1e-08 Score=78.88 Aligned_cols=157 Identities=22% Similarity=0.260 Sum_probs=86.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHcc---------CchHHHHHHHHHcCCCcCHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAK---------TPLGIKAKEAMDKGELVSDD 94 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~ 94 (246)
...+.+|+++|.||.|||++|+.|+.-|+ ..++++++.-|+..... .+.+..+++.+.. .
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~------~ 82 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAK------E 82 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHH------H
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHH------H
Confidence 45678999999999999999999998763 36789998888765431 1223333332211 1
Q ss_pred HHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCC
Q 025937 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 174 (246)
Q Consensus 95 ~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~ 174 (246)
.+.+++ ..+.. ..+...|+|+...+....+.+.+.+.+.+..+ +.|..-|+++.+.++-....... ...|.
T Consensus 83 ~l~dl~-~~l~~-~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~v-lFIEsic~D~~ii~~NI~~~~~~--spDY~---- 153 (222)
T PF01591_consen 83 ALEDLI-EWLQE-EGGQVAIFDATNSTRERRKMLVERFKEHGIKV-LFIESICDDPEIIERNIREKKQN--SPDYK---- 153 (222)
T ss_dssp HHHHHH-HHHHT-S--SEEEEES---SHHHHHHHHHHHHHTT-EE-EEEEEE---HHHHHHHHHHHHTT--SGGGT----
T ss_pred HHHHHH-HHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEEEEeCCHHHHHHHHHHHHcC--Ccccc----
Confidence 111222 22221 23568999999999999999999998887555 56666667766666543322100 01110
Q ss_pred CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHH
Q 025937 175 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 215 (246)
Q Consensus 175 pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 215 (246)
+ ..++.-.+.+.+|++.|+..++++.
T Consensus 154 -----~----------~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 154 -----G----------MDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp -----T----------S-HHHHHHHHHHHHHHHHTT-----
T ss_pred -----c----------CCHHHHHHHHHHHHHhhcccccccc
Confidence 0 0112234677889999999999887
No 129
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.91 E-value=1.1e-08 Score=77.65 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=59.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHHHHHccCchHHHHH-HHHHcCCCcCHHHHHHHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAK-EAMDKGELVSDDLVVGIIDEAM 104 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~l 104 (246)
++..|||+|.|||||||+|+.|.++| | ..+++. |.++..+.++-.+...-+ +.+.. -..+..++.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~rr-----~~~~A~ll~--- 71 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIRR-----IAEVAKLLA--- 71 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHHH-----HHHHHHHHH---
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHHH-----HHHHHHHHH---
Confidence 46799999999999999999999998 3 455666 455543332211111100 00000 001112221
Q ss_pred cCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
..+..+|++......+..++..+.+.+. .+ +-||++||.+++.+|=
T Consensus 72 ---~~G~ivIva~isp~~~~R~~~R~~~~~~--~f-~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 72 ---DQGIIVIVAFISPYREDREWARELIPNE--RF-IEVYVDCPLEVCRKRD 117 (156)
T ss_dssp ---HTTSEEEEE----SHHHHHHHHHHHHTT--EE-EEEEEES-HHHHHHHT
T ss_pred ---hCCCeEEEeeccCchHHHHHHHHhCCcC--ce-EEEEeCCCHHHHHHhC
Confidence 1233455554444444555454444321 34 8899999999999994
No 130
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.88 E-value=2.5e-07 Score=75.25 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=72.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCccee---ehHHHHH--------HHHHccCchH--HHHHHHHHc-CCCcCHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL---ATGDMLR--------AAVAAKTPLG--IKAKEAMDK-GELVSDD 94 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i---~~~~l~~--------~~~~~~~~~g--~~~~~~~~~-~~~~~~~ 94 (246)
....++|++.|+.|||||++|+.||+.+|+.|+ .+|++.- .......+-. -.++.+-.+ .+.++..
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~ 147 (393)
T KOG3877|consen 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAA 147 (393)
T ss_pred cccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHH
Confidence 345579999999999999999999999998765 4544321 1100000000 011111111 1111111
Q ss_pred HHHHHHH-------HHHcC-CCCCcceEecCCCCCH-HHHHHHH------------------HHHHhcCCCcCEEEEEec
Q 025937 95 LVVGIID-------EAMKK-PSCQKGFILDGFPRTE-VQAQKLD------------------EMLEKQGKKVDKVLNFAI 147 (246)
Q Consensus 95 ~~~~~l~-------~~l~~-~~~~~g~iid~~~~~~-~~~~~l~------------------~~l~~~~~~~~~vI~L~~ 147 (246)
...++.. .++.. +..+.|+|++..|... ..++.+. ..+-+. ..|.+||+|++
T Consensus 148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~l-l~PHLViYld~ 226 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQL-LWPHLVIYLDT 226 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhh-cCccEEEEEcC
Confidence 1111111 11111 2346899998877542 1111110 001111 58999999999
Q ss_pred CHHHHHHHHhcCcC
Q 025937 148 DDAVLEERITGRWI 161 (246)
Q Consensus 148 ~~e~~~~Rl~~r~~ 161 (246)
|...+.+++++|..
T Consensus 227 Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 227 PVNKVLENIKRRGN 240 (393)
T ss_pred CcHHHHHHHHhcCC
Confidence 99999999999853
No 131
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.87 E-value=4.3e-08 Score=81.41 Aligned_cols=110 Identities=18% Similarity=0.144 Sum_probs=60.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHHHHHHccC----chHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKT----PLGIKAKEAMDKGELVSDDLVVGIIDEA 103 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (246)
++|+|.|.|||||||+|+.|++.+ .+.+++.+++. +.... ...+.++.. +...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~-----------l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEARGS-----------LKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHHHH-----------HHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHHHH-----------HHHHHHHh
Confidence 489999999999999999999976 23456654433 11111 111111111 12233333
Q ss_pred HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+ .....+|+|+.....-....|-.+.++.+... .+|++++|.+.+.+|-..|.
T Consensus 68 l---s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~-c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 68 L---SKDTIVILDDNNYIKGMRYELYCLARAYGTTF-CVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp H---TT-SEEEE-S---SHHHHHHHHHHHHHTT-EE-EEEEEE--HHHHHHHHHHTT
T ss_pred h---ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCE-EEEEECCCHHHHHHhhhccC
Confidence 3 22467888887655555544555666666555 89999999999999998875
No 132
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.87 E-value=3e-09 Score=78.15 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=54.7
Q ss_pred EEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH---HHHHHHHHcCCCCCc
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEAMKKPSCQK 111 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~ 111 (246)
|+|.|+|||||||+++.|+++++..+. + ............-............+.. ...+...........
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIR---D---IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHH---H---HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHH---H---HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 789999999999999999999832211 1 1111111110000001111222223322 222222221122345
Q ss_pred ceEecCCCCCHHHHHHHHHHHHhcCCCcCEE-EEEecCHHHHHHHHhcCc
Q 025937 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKV-LNFAIDDAVLEERITGRW 160 (246)
Q Consensus 112 g~iid~~~~~~~~~~~l~~~l~~~~~~~~~v-I~L~~~~e~~~~Rl~~r~ 160 (246)
.+|+|+....... ....... |+|+||++++.+|+..|.
T Consensus 75 ~~iid~~~~~~~~-----------~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 75 NIIIDGILSNLEL-----------ERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp CEEEEESSEEECE-----------TTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred cEEEecccchhcc-----------cccceeeEEEEECCHHHHHHHHHhCC
Confidence 6788876433110 0112223 999999999999999985
No 133
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.87 E-value=1.4e-09 Score=86.61 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=69.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc---CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcC--------HHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS--------DDLVV 97 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~ 97 (246)
...|..+++.|+|||||||++..+.+.+ ++.+|+.|++... .+ ....+... +.... ..+..
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~-~p----~~~~~~~~---~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF-HP----DYDELLKA---DPDEASELTQKEASRLAE 83 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG-ST----THHHHHHH---HCCCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh-cc----chhhhhhh---hhhhhHHHHHHHHHHHHH
Confidence 4678899999999999999999999987 6788998665332 21 11111110 00000 11223
Q ss_pred HHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 98 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 98 ~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
.++...+.. +.-+|+++..........+.+.++..|-.+ .++++.++++....|+..|..
T Consensus 84 ~~~~~a~~~---~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 84 KLIEYAIEN---RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHHHC---T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHHH
Confidence 344444433 346889988777666665666777777766 778899999999999988753
No 134
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.87 E-value=4.6e-08 Score=83.45 Aligned_cols=48 Identities=13% Similarity=-0.083 Sum_probs=38.2
Q ss_pred ceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 112 g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
-+|+|+.......+..+..+...++..+ .+||+++|.+++.+|..+|.
T Consensus 129 lvilDd~fy~ks~Ryel~~LAr~~~~~~-~~V~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 129 CLVLDDNFYYQSMRYEVYQLARKYSLGF-CQLFLDCPVESCLLRNKQRP 176 (340)
T ss_pred CceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEEeCCHHHHHHHHhcCC
Confidence 4777877666666666666666777666 89999999999999999885
No 135
>PHA03132 thymidine kinase; Provisional
Probab=98.86 E-value=5e-08 Score=88.07 Aligned_cols=130 Identities=13% Similarity=0.052 Sum_probs=69.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCC--CcCHH-HH-----------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDD-LV----------- 96 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~--~~~~~-~~----------- 96 (246)
+.++|+|.|+.||||||+++.|++.+|..++.+.+=......-.+..+..+.+.+..+. .+... .+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 36899999999999999999999998544332211110000001123445555544321 11111 11
Q ss_pred ---HHHHHHH---HcC----CCCCcceEecCCCCCHHH-------------HHHHHHHHHhcC-CCcCEEEEEecCHHHH
Q 025937 97 ---VGIIDEA---MKK----PSCQKGFILDGFPRTEVQ-------------AQKLDEMLEKQG-KKVDKVLNFAIDDAVL 152 (246)
Q Consensus 97 ---~~~l~~~---l~~----~~~~~g~iid~~~~~~~~-------------~~~l~~~l~~~~-~~~~~vI~L~~~~e~~ 152 (246)
...+... ... ...+..+|.|.++..... ...+...+.... ..||++|+|+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 0111111 011 122345666877643221 011122222222 3699999999999999
Q ss_pred HHHHhcCc
Q 025937 153 EERITGRW 160 (246)
Q Consensus 153 ~~Rl~~r~ 160 (246)
.+|+.+|.
T Consensus 416 lkRIkkRg 423 (580)
T PHA03132 416 LRRVKKRG 423 (580)
T ss_pred HHHHHhcC
Confidence 99999884
No 136
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.85 E-value=1.4e-07 Score=88.82 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=34.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~ 69 (246)
++|.|.|||||||||+|+.||+++|+.+++++.+.|.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 3799999999999999999999999999999988776
No 137
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.85 E-value=4.9e-08 Score=74.05 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=61.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHc---Cc--ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHH--HHHHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII--DEAMKK 106 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~---~~--~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ 106 (246)
+|+|.|+|||||||+++.|++.+ +. .+++. +.+++.+.....+... .. .+....+. ...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~~--~~~~~~~~~~a~~l~- 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------DR--EENIRRIAEVAKLLA- 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------hH--HHHHHHHHHHHHHHH-
Confidence 47899999999999999999998 53 44555 4444433221110000 00 01111111 11111
Q ss_pred CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
..+..+|+|...........+...+. + .+-.+|+|++|.+++.+|..+
T Consensus 69 -~~G~~VIid~~~~~~~~R~~~~~l~~--~-~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 -DAGLIVIAAFISPYREDREAARKIIG--G-GDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred -hCCCEEEEccCCCCHHHHHHHHHhcC--C-CCEEEEEEeCCHHHHHHhCch
Confidence 22455777765444455554544432 2 334789999999999999644
No 138
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.83 E-value=1e-08 Score=80.42 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR 68 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~ 68 (246)
+|.|.|++||||||+|+.|++.+ ++.+++.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 47899999999999999999999 688899887754
No 139
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.82 E-value=1.3e-08 Score=79.93 Aligned_cols=163 Identities=22% Similarity=0.253 Sum_probs=86.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHHHHHHccCc--------hHHHHHHHHHcCCCcCHH--------
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDD-------- 94 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~-------- 94 (246)
++.|+|+||+||||||+++.|.+.++- ....+...-|. +..+.. ....+...+..|..+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~-~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRP-PRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS--GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccC-CcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 568999999999999999999998742 11111111121 111111 112344444443222110
Q ss_pred HHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCccccccC
Q 025937 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRTYHTKF 173 (246)
Q Consensus 95 ~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~g~~~~~~~ 173 (246)
.....+...+. .+...|++.-+ .-.. .+...+..| .+|++.++ .+.+.+|+..|.
T Consensus 81 t~~~~i~~~~~---~gk~~il~~~~---~g~~----~L~~~~~~~-~~IfI~~~s~~~l~~~l~~r~------------- 136 (183)
T PF00625_consen 81 TSKSAIDKVLE---EGKHCILDVDP---EGVK----QLKKAGFNP-IVIFIKPPSPEVLKRRLRRRG------------- 136 (183)
T ss_dssp EEHHHHHHHHH---TTTEEEEEETH---HHHH----HHHHCTTTE-EEEEEEESSHHHHHHHHHTTT-------------
T ss_pred hccchhhHhhh---cCCcEEEEccH---HHHH----HHHhcccCc-eEEEEEccchHHHHHHHhccc-------------
Confidence 01122222222 13445665332 2222 233445677 78888765 677777776652
Q ss_pred CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 174 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 174 ~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
.++.+.+..++........... . -.++..| .+.++.+..|.++|++
T Consensus 137 --------------------~~~~~~i~~r~~~~~~~~~~~~----~-fd~vi~n--~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 137 --------------------DESEEEIEERLERAEKEFEHYN----E-FDYVIVN--DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp --------------------HCHHHHHHHHHHHHHHHHGGGG----G-SSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred --------------------cccHHHHHHHHHHHHHHHhHhh----c-CCEEEEC--cCHHHHHHHHHHHHHh
Confidence 3355677777776554332221 1 1233333 4799999999998863
No 140
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.81 E-value=4.2e-08 Score=91.14 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=64.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 103 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (246)
+.++.+|++.|.|||||||+++.|++++ ++.+++. |.+++.+..+..+....+ ..+...+...+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~~~~~~~~r----------~~~~~~l~~~a 525 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRDLGFSDADR----------VENIRRVAEVA 525 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCCCCCCHHHH----------HHHHHHHHHHH
Confidence 5568899999999999999999999997 3466777 445553322111111100 01111111111
Q ss_pred HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
......+..+|+|...........+.+.+.+ .+-.+|||+++.+.+.+|.
T Consensus 526 ~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~---~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 526 RLMADAGLIVLVSFISPFREERELARALHGE---GEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHhCCCEEEEECCCCCHHHHHHHHHhccc---CCeEEEEECCCHHHHHhhC
Confidence 1111223456666543334444444433321 1237899999999999993
No 141
>PTZ00301 uridine kinase; Provisional
Probab=98.77 E-value=7.5e-08 Score=77.06 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.++|.|.|+|||||||+|+.|++.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 142
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.75 E-value=3e-07 Score=76.89 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=36.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcce-eehHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVA 72 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~-i~~~~l~~~~~~ 72 (246)
..+.|++|+|.|++||||||+|..||.+||... ++. |.+++.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~R 132 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGT-DSIREVMR 132 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHHH
Confidence 346788999999999999999999999999974 554 67776554
No 143
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.74 E-value=5.2e-07 Score=85.60 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=36.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
.+++|.|.||+||||||+|+.||++|++.+++++.+.|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3358999999999999999999999999999999998874
No 144
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.73 E-value=2e-07 Score=74.11 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHc---CcceeehHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDML 67 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l~ 67 (246)
+|.|.|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 47899999999999999999987 35677887654
No 145
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.70 E-value=1.5e-07 Score=74.76 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=66.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcc---eeehHHHHHHHHHc----------cCc-------hHHHHHHHHHcCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAA----------KTP-------LGIKAKEAMDKGE 89 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~---~i~~~~l~~~~~~~----------~~~-------~g~~~~~~~~~~~ 89 (246)
.++.+|.|.|++||||||+|+.|++.++.. .++.|+.....-.. ..+ +.+.+ ..+.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L-~~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHL-KDLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHH-HHHHcCC
Confidence 345799999999999999999999999844 56665554321100 000 01111 1222333
Q ss_pred CcCHHHHHHHHHHH---HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 90 LVSDDLVVGIIDEA---MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 90 ~~~~~~~~~~l~~~---l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+......-..-.+ .........+|++|+-.-.+ +.+. ...|+-|+++++.++...|...|.
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr-------~~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR-------DLMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH-------hhcCEEEEEeCCccHHHHHHHHHH
Confidence 22211110000000 00112345678888743322 1222 235899999999999888877664
No 146
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.70 E-value=1.6e-06 Score=76.29 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=36.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCccee-ehHHHHHHHHHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAA 73 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i-~~~~l~~~~~~~ 73 (246)
+++|.+|++.|++||||||++..||.++|+.++ +. |.+++.+..
T Consensus 252 ~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~lr~ 296 (475)
T PRK12337 252 PPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVLRA 296 (475)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHHHh
Confidence 356899999999999999999999999999754 55 666665553
No 147
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.70 E-value=1.9e-06 Score=69.59 Aligned_cols=147 Identities=18% Similarity=0.300 Sum_probs=90.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHH-HcCCC-CC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA-MKKPS-CQ 110 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~-~~ 110 (246)
.+|+|+|.+|||||+..+.| +.+|+.+++- +|.+++-+++.-. ..... ..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 37899999999999999988 5588877743 2222332332211 11111 12
Q ss_pred cceEecCCCCCHHHHHHHHHHH---HhcC-CCcCEEEEEecCHHHHHHHHhc-CcCCCCCCccccccCCCCCCCCCCCCC
Q 025937 111 KGFILDGFPRTEVQAQKLDEML---EKQG-KKVDKVLNFAIDDAVLEERITG-RWIHPSSGRTYHTKFAPPKVPGVDDVT 185 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l---~~~~-~~~~~vI~L~~~~e~~~~Rl~~-r~~~~~~g~~~~~~~~pp~~~~~~~~~ 185 (246)
-.+++|- ++......+.+.+ .+.+ ..+ .+++|+++++++.+|... |+.||..+.
T Consensus 54 vAv~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~------------------ 112 (286)
T COG1660 54 VAVVIDV--RSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSED------------------ 112 (286)
T ss_pred EEEEEec--ccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCcc------------------
Confidence 3455663 2333333333333 3332 234 789999999999999855 777765431
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEe-CCCChhHHHHHHHHHhc
Q 025937 186 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLH-AEKPPQEVTSEVQKALS 245 (246)
Q Consensus 186 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id-~~~~~~ev~~~i~~~l~ 245 (246)
+ .+..-|+.-++...++.+..+ ++|| .+.++-++-+.|.+.+.
T Consensus 113 --------~----~l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 113 --------G----LLLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFL 156 (286)
T ss_pred --------C----cHHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHc
Confidence 1 145555666666677776654 3456 46899999999988764
No 148
>PRK07429 phosphoribulokinase; Provisional
Probab=98.67 E-value=4.1e-07 Score=77.59 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDM 66 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l 66 (246)
..++.+|.|.|++||||||+++.|+..++ ...+..|++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 46778999999999999999999999987 456677665
No 149
>PLN02772 guanylate kinase
Probab=98.67 E-value=5.1e-07 Score=77.92 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHHHHHHccCchH--------HHHHHHHHcCCCcCHHH------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTPLG--------IKAKEAMDKGELVSDDL------ 95 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~------ 95 (246)
..+.++|+||+||||+|+.+.|.+.+.. ..+.+...-|.. ..++.-| ..+...+..+..+....
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~p-R~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y 212 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-REMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY 212 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCC-cccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence 4568999999999999999999887632 222332222221 1111111 33444444444332211
Q ss_pred --HHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccC
Q 025937 96 --VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 173 (246)
Q Consensus 96 --~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~ 173 (246)
....+...+. .++.+|+|--+... +.+.+. ...+-.++.+..+.+++.+|+..|.
T Consensus 213 GTsk~~V~~vl~---~Gk~vILdLD~qGa---r~Lr~~----~l~~v~IFI~PPSlEeLe~RL~~RG------------- 269 (398)
T PLN02772 213 GTSIEAVEVVTD---SGKRCILDIDVQGA---RSVRAS----SLEAIFIFICPPSMEELEKRLRARG------------- 269 (398)
T ss_pred cccHHHHHHHHH---hCCcEEEeCCHHHH---HHHHHh----cCCeEEEEEeCCCHHHHHHHHHhcC-------------
Confidence 1122222221 23445665333322 222221 1233344444556889999998874
Q ss_pred CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 174 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 174 ~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.+++|+..+..+..... +...-.++.+|. +.++.++.+.++|.
T Consensus 270 --------------------teseE~I~kRL~~A~~Ei~~~~--~~~~fD~vIvND--dLe~A~~~L~~iL~ 317 (398)
T PLN02772 270 --------------------TETEEQIQKRLRNAEAELEQGK--SSGIFDHILYND--NLEECYKNLKKLLG 317 (398)
T ss_pred --------------------CCCHHHHHHHHHHHHHHHhhcc--ccCCCCEEEECC--CHHHHHHHHHHHHh
Confidence 3366889999988755432111 111113445553 78899999888763
No 150
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.66 E-value=1e-06 Score=71.72 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...++.+|.|.|++||||||+++.|+..+.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457788999999999999999999998874
No 151
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.62 E-value=1.5e-07 Score=61.71 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.|++.|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 152
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.60 E-value=7.8e-07 Score=66.86 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=48.9
Q ss_pred EEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhh
Q 025937 141 KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK 220 (246)
Q Consensus 141 ~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (246)
++|.|.++++++.+|+..|. .++.+++..|+..-... -..
T Consensus 117 lvv~ita~p~VLaqRL~~RG---------------------------------REs~eeI~aRL~R~a~~-------~~~ 156 (192)
T COG3709 117 LVVCITASPEVLAQRLAERG---------------------------------RESREEILARLARAARY-------TAG 156 (192)
T ss_pred eeEEEecCHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHhhccc-------ccC
Confidence 78999999999999999884 44678888887652221 112
Q ss_pred cCcEEEEeCCCChhHHHHHHHHHh
Q 025937 221 KGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 221 ~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.+.++.||+++.++...+.+.+.|
T Consensus 157 ~~dv~~idNsG~l~~ag~~ll~~l 180 (192)
T COG3709 157 PGDVTTIDNSGELEDAGERLLALL 180 (192)
T ss_pred CCCeEEEcCCCcHHHHHHHHHHHH
Confidence 457899999999999887776655
No 153
>PLN02348 phosphoribulokinase
Probab=98.59 E-value=4.6e-07 Score=78.23 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...++.+|.|.|++||||||+++.|++.++
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356778999999999999999999999986
No 154
>PHA00729 NTP-binding motif containing protein
Probab=98.57 E-value=8.7e-07 Score=71.17 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcc--eeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~--~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
....|+|+|+||+||||+|..|+..++.. .+..++.... + ......++.+.+...+........
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d---~-----------~~~~~fid~~~Ll~~L~~a~~~~~ 81 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ---Y-----------VQNSYFFELPDALEKIQDAIDNDY 81 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh---c-----------CCcEEEEEHHHHHHHHHHHHhcCC
Confidence 44589999999999999999999987521 1111110000 0 000011222223333333322211
Q ss_pred CCcceEecCCCCCHHH---H-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 109 CQKGFILDGFPRTEVQ---A-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~---~-------~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
...-.|||++..-... . ..+..++. ..+++++++.++++.+.+++..|.
T Consensus 82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred CCCEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCC
Confidence 1133588874322111 0 11223332 357889999999999999999875
No 155
>PRK05439 pantothenate kinase; Provisional
Probab=98.49 E-value=6e-07 Score=75.76 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=32.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC-------cceeehHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~l~ 67 (246)
....+.+|.|.|+|||||||+|+.|++.++ +..+++|+..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456788999999999999999999998663 3567777765
No 156
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.48 E-value=1.5e-07 Score=74.63 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999996
No 157
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.45 E-value=8.8e-07 Score=74.17 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-------cceeehHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~l~ 67 (246)
.+.|.+|.|.|++||||||+++.|+..+. +..+++|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 46788999999999999999998877653 3456665543
No 158
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.40 E-value=7.5e-07 Score=71.98 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC-------cceeehHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~l~ 67 (246)
+|.|.|++||||||+++.|+..+. +.++++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999999873 3456666653
No 159
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.37 E-value=3e-06 Score=70.68 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHc---CcceeehHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDM 66 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l 66 (246)
+|.|.|++||||||+++.|+..+ +...+..|++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 47899999999999999999887 4556777655
No 160
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.36 E-value=1.1e-06 Score=68.67 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 69 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~~ 69 (246)
+|.|.|++||||||+|+.|++.+ +...++.|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 47899999999999999999996 4578899888763
No 161
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.32 E-value=9.7e-06 Score=63.19 Aligned_cols=121 Identities=14% Similarity=0.145 Sum_probs=69.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHHHHHH----cc-------------CchHHHHHHHHHcCCCcCH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVA----AK-------------TPLGIKAKEAMDKGELVSD 93 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~~~~~----~~-------------~~~g~~~~~~~~~~~~~~~ 93 (246)
..+|.|.|...|||||+|+.|.+.| |...|+-||.....-. .. ..+...+...+...+..+.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ 83 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE 83 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence 3578899999999999999999998 6777888776542111 00 0122233333444333322
Q ss_pred --HHHHHH--H---HHHHcCC-CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 94 --DLVVGI--I---DEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 94 --~~~~~~--l---~~~l~~~-~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
+.++.. + ..+.... .....+++|||-...... +. ..+|..|++..+.+++++|-..|..
T Consensus 84 ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p--~~-------~~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 84 AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKP--QV-------DLFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecch--hh-------hhhhhheeeeccHHHHHHhhccccc
Confidence 111110 1 1111111 112457888874321110 01 2357889999999999999888754
No 162
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=2.3e-05 Score=60.82 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 126 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 126 ~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
.+++.++.+....+|.+|||.++|+++.+|+..|..
T Consensus 141 eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 141 EWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred HHHHHHHhccccccceEEEeecChHHHHHHHHHHhh
Confidence 445555556557899999999999999999988754
No 163
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=6.7e-05 Score=60.64 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~ 73 (246)
....|.+|+|=|+||+||||+|..||.++|..++=..|.+|+.+.+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ 130 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRK 130 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence 4566788888999999999999999999999766444777776664
No 164
>PRK15453 phosphoribulokinase; Provisional
Probab=98.28 E-value=6e-06 Score=68.39 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~ 67 (246)
++++++|+|+|.|||||||+++.|++.++ ..+++.|+.-
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 35678999999999999999999998874 3556665543
No 165
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=98.23 E-value=2.3e-07 Score=52.09 Aligned_cols=36 Identities=58% Similarity=0.955 Sum_probs=30.3
Q ss_pred CcCCCCCCccccccCCCCCCCCCCCCCCCccccCCC
Q 025937 159 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 194 (246)
Q Consensus 159 r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~ 194 (246)
|++++.+|++||..|+||..+++|+.++..|++|.+
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence 467889999999999999999999999999888753
No 166
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.18 E-value=1.6e-05 Score=71.96 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDM 66 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l 66 (246)
...++.+|.|.|++||||||+++.|+..+ +...+++|+.
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 34567899999999999999999999988 3456777664
No 167
>PLN02165 adenylate isopentenyltransferase
Probab=98.17 E-value=1.3e-06 Score=74.03 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l 66 (246)
-+.++.+|+|+||+||||||++..|++.++..++++|.+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 366677999999999999999999999999999998765
No 168
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.12 E-value=1e-05 Score=75.72 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcc-----eeehHHHHHHHHHccCc----hH-HHHHHHHHcCCCcCHHHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC-----HLATGDMLRAAVAAKTP----LG-IKAKEAMDKGELVSDDLVVGII 100 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~-----~i~~~~l~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~l 100 (246)
....|++.|.||+||||+++.|++.+++. ++..+..-++....... .. ...+.. + ...+...+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~------~-~~~~~~d~ 286 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFR------I-AKAIAHDM 286 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHH------H-HHHHHHHH
Confidence 45689999999999999999999998544 34444333332111000 00 000000 0 00111111
Q ss_pred HHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCC-cCEEEE--EecCHHHHHHHHhcC
Q 025937 101 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLN--FAIDDAVLEERITGR 159 (246)
Q Consensus 101 ~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~-~~~vI~--L~~~~e~~~~Rl~~r 159 (246)
...+.. .+.+.|+|+...+......+.+.+.+.+.. +..+|+ .-|++....++...|
T Consensus 287 ~~~v~~--~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r 346 (664)
T PTZ00322 287 TTFICK--TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLR 346 (664)
T ss_pred HHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHH
Confidence 111221 245899999988888877777777766531 113444 444555555555444
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.12 E-value=2.5e-06 Score=62.73 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.6
Q ss_pred EEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
|+|.||||+||||+++.+++.++.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999766543
No 170
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.09 E-value=9.8e-06 Score=64.83 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=36.7
Q ss_pred ccccccCCC-CchhHHHHHHHHhhc---CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 4 SSAANLEDV-PSVDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
.+|.++.+. -++++..+..-.+.. .......++|.||||+||||+|+.+|..++..+.
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 455555554 455565554444443 2344568999999999999999999999987553
No 171
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.6e-05 Score=70.60 Aligned_cols=125 Identities=18% Similarity=0.308 Sum_probs=71.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHHHHHHccCc-----------------hHHHHHHHHHc-
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTP-----------------LGIKAKEAMDK- 87 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~~~~~~~~~-----------------~g~~~~~~~~~- 87 (246)
+..+|+-|++.||||||||++++.+|..-++.++++ -+++.++...... +-.++...-.+
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R 543 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSR 543 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhcc
Confidence 558888999999999999999999999988777765 3444443222110 11122221111
Q ss_pred C---CCcCHHHHHHHHHHHHcCCCCC-cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 88 G---ELVSDDLVVGIIDEAMKKPSCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 88 ~---~~~~~~~~~~~l~~~l~~~~~~-~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
+ .-+.+..+..++ ..+...... +.+|+-...+... ++..+.. -.++|.+||+..|+......+.+
T Consensus 544 ~g~~~~v~~RVlsqLL-tEmDG~e~~k~V~ViAATNRpd~----ID~ALlR-PGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 544 GGSSSGVTDRVLSQLL-TEMDGLEALKNVLVIAATNRPDM----IDPALLR-PGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred CCCccchHHHHHHHHH-HHcccccccCcEEEEeccCChhh----cCHHHcC-CcccceeEeecCccHHHHHHHHH
Confidence 1 112223333333 233333333 5566655544432 2323322 24789999999999877777654
No 172
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=0.00019 Score=54.19 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=62.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc--CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
+.+.++.||.||||||+...+-..+ ++.+++.|.+..+ +.+..+-...++. .......+...+. .
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A---------~r~ai~~i~~~I~---~ 68 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQA---------ARVAIDRIARLID---L 68 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHH---------HHHHHHHHHHHHH---c
Confidence 5678899999999999987766655 5688899766544 3333332221111 1112222322222 2
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
..+|..+..-......+.+. ..+..|....+.+..--+.+...+|+..|-
T Consensus 69 ~~~F~~ETtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RV 118 (187)
T COG4185 69 GRPFIAETTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRV 118 (187)
T ss_pred CCCcceEEeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence 34565554433333333332 234455555333333336678888887764
No 173
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.05 E-value=0.00082 Score=54.42 Aligned_cols=184 Identities=10% Similarity=0.085 Sum_probs=94.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHH---HHHHHccCchHHHHHHHHHcCCC--cCHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML---RAAVAAKTPLGIKAKEAMDKGEL--VSDDLVVGIIDE 102 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~---~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~ 102 (246)
+...|.+|+|.|..||||..+.+.|.+.++-.++.+-.+- .... ....+.+.....=..|+. ....+-.+.+..
T Consensus 27 ~~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~ 105 (230)
T TIGR03707 27 ETGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVE 105 (230)
T ss_pred HcCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHH
Confidence 4567999999999999999999999999965444331110 0000 001111111111111110 001111122222
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCC
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 182 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~ 182 (246)
++...... ..+.....+...+++.|..-|..+ +=+||.++.++..+|+..|.-+|.+.
T Consensus 106 rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-lKfflhIsk~eQ~kRl~~r~~~p~k~---------------- 163 (230)
T TIGR03707 106 RVMGFCTD-----EEYEEFLRQVPEFERMLVRDGIHL-FKYWLSVSREEQLRRFKARIDDPLKQ---------------- 163 (230)
T ss_pred HhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc----------------
Confidence 22111000 001122344455666777767666 88999999999999999887544321
Q ss_pred CCCCCccccCCCCcHHHHH--HHHHHHHHhcHHHHHHHh-hcCcEEEEeCCCChhH---HHHHHHHHh
Q 025937 183 DVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYS-KKGIVAQLHAEKPPQE---VTSEVQKAL 244 (246)
Q Consensus 183 ~~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~e---v~~~i~~~l 244 (246)
=..++..+. .+...|....+.+.+.-. ....+++|+++...-- |.+.|...|
T Consensus 164 ----------Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l 221 (230)
T TIGR03707 164 ----------WKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRL 221 (230)
T ss_pred ----------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhC
Confidence 122333333 235666665555444332 3457899998754332 444444443
No 174
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=4.9e-05 Score=63.07 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.....++|.||||+||||+|+.+++.+
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455689999999999999999999875
No 175
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.00 E-value=7.5e-05 Score=56.70 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=28.3
Q ss_pred EEEECCCCCChhHHHHHHHhHcC-cceeehHHH
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYC-LCHLATGDM 66 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~-~~~i~~~~l 66 (246)
|+=++.+||||||++..|+.-|| +-|+..|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 44478999999999999999999 999988776
No 176
>PF13173 AAA_14: AAA domain
Probab=97.99 E-value=9.5e-05 Score=54.42 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=59.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC----cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
+.++|.||.||||||+++.+++.+. +.+++.++.-..... . .+ +.+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--------------~-----~~-~~~~~~~~~~~-- 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--------------D-----PD-LLEYFLELIKP-- 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--------------h-----hh-hHHHHHHhhcc--
Confidence 5899999999999999999998875 677777654322100 0 00 12222222111
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 155 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~R 155 (246)
....++||.+.........+..+.. . .++.-|++..+......+
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-~--~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-N--GPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-h--ccCceEEEEccchHHHhh
Confidence 2356788987655554454444432 2 256778888887766644
No 177
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.97 E-value=2e-05 Score=58.26 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
.+......+.+...-+++.+|+|.|+.|+||||+++.+++.+|+.
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344445555555334566799999999999999999999999864
No 178
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.97 E-value=8.4e-06 Score=68.96 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
.+++|+|.||+||||||+|..|++.++..+|+.|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 45799999999999999999999999998888866
No 179
>PRK12377 putative replication protein; Provisional
Probab=97.95 E-value=0.00032 Score=57.63 Aligned_cols=107 Identities=13% Similarity=0.252 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (246)
....++|.|+||+|||+++..++..+ | +.++++.+++... +..+..+.. ...+ +.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-----------~~~~~~~~~-----~~~~----l~ 159 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-----------HESYDNGQS-----GEKF----LQ 159 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-----------HHHHhccch-----HHHH----HH
Confidence 34579999999999999999999887 3 3566777766542 222222110 1111 22
Q ss_pred CCCCCcceEecCCC---CCHHHHHHHHHHHHh-cC-CCcCEEEEEecCHHHHHHHHhc
Q 025937 106 KPSCQKGFILDGFP---RTEVQAQKLDEMLEK-QG-KKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 106 ~~~~~~g~iid~~~---~~~~~~~~l~~~l~~-~~-~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
......-.|||.+. .+......|..++.. +. ..| .+|-=+.+.+.+.+++..
T Consensus 160 ~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p-tiitSNl~~~~l~~~~~~ 216 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS-VGMLTNLNHEAMSTLLGE 216 (248)
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHhhH
Confidence 22334568888773 233444455555533 22 245 666667777766554433
No 180
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=0.00013 Score=63.93 Aligned_cols=110 Identities=23% Similarity=0.353 Sum_probs=59.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc----C--cceeehHHHHHHHHHccCchHHHHHHHHHc-CCCc-CHHHHHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELV-SDDLVVGIIDE 102 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~----~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~-~~~~~~~~l~~ 102 (246)
++.+++|.||+||||||++..||..+ | +..++. |..|.... ..++.+... +..+ .... ...+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~-~~~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKD-IKKFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHH-HHHHHH
Confidence 35679999999999999999999765 2 233444 44443211 112222111 1111 1111 222233
Q ss_pred HHcCCCCCcceEec--CCC-CCHHHHHHHHHHHHhcCC--CcCEEEEEecCH
Q 025937 103 AMKKPSCQKGFILD--GFP-RTEVQAQKLDEMLEKQGK--KVDKVLNFAIDD 149 (246)
Q Consensus 103 ~l~~~~~~~g~iid--~~~-~~~~~~~~l~~~l~~~~~--~~~~vI~L~~~~ 149 (246)
.+.. ...+.++|| |++ +...+...|.+++...+. ....+++|++..
T Consensus 294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 3332 234678999 653 567788777776654322 224555666543
No 181
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.95 E-value=0.00081 Score=55.53 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=88.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH---HHHHHHccCchHHHHHHHHHcCCC-cCH-HHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM---LRAAVAAKTPLGIKAKEAMDKGEL-VSD-DLVVGIIDEA 103 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l---~~~~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~l~~~ 103 (246)
...+.+|+|.|..||||..+.+.|.+.++-..+.+-.+ -... .....+.+.....=..|.. +.+ .+-.+.+..+
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE-~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~r 131 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEE-LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVVR 131 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHH-HcCchHHHHHHhCCCCCeEEEEcCccccchhhhh
Confidence 45689999999999999999999999996444433111 0000 0001111211111111110 000 0111111111
Q ss_pred HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCC
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~ 183 (246)
+..... -..+.....+...+++.|..-|..+ +=+||.++.++..+|+..|..++.+.
T Consensus 132 v~g~~~-----~~~~~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k~----------------- 188 (264)
T TIGR03709 132 VHGLIP-----KAIWERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTKN----------------- 188 (264)
T ss_pred hcCCCC-----HHHHHHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCccc-----------------
Confidence 110000 0001112334455666777666666 88999999999999999886544321
Q ss_pred CCCCccccCCCCcHHHHH--HHHHHHHHhcHHHHHHHh-hcCcEEEEeCCCCh
Q 025937 184 VTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYS-KKGIVAQLHAEKPP 233 (246)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~ 233 (246)
=..++..+. .+.+.|....+.+...-. ....+++|+++...
T Consensus 189 ---------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~ 232 (264)
T TIGR03709 189 ---------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKW 232 (264)
T ss_pred ---------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence 112222332 335666665555544322 24578999987543
No 182
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.94 E-value=8.9e-05 Score=57.96 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=29.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~ 72 (246)
+|.|.|..|||++++++.||+++|+++++- +++.....
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~ 38 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAK 38 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHH
Confidence 588999999999999999999999999998 77765433
No 183
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6e-05 Score=67.89 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=32.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+..+|.=++|.||||||||.+|+.+|.++|++++++
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 557777899999999999999999999999998876
No 184
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.93 E-value=0.00093 Score=59.91 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceee---hHHHHHHHHHccCchHHHHHHHHHcCCC-cCH-HHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA---TGDMLRAAVAAKTPLGIKAKEAMDKGEL-VSD-DLVVGIIDEA 103 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~---~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~l~~~ 103 (246)
.+.+.+|+|.|..||||+++.+.|.+.++-..+. ...--.... ....+.+.....=..|.. +.+ .+-.+.+..+
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~-~~~flwRfw~~lP~~G~I~IFdRSWY~~vlver 115 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEER-ERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIER 115 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHh-cCcHHHHHHHhCCCCCeEEEEcCcccchhhHHH
Confidence 6889999999999999999999999998543332 211000000 001111111111111110 000 1111112111
Q ss_pred HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCC
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~ 183 (246)
+...... ..+.....+...+++.|..-|... +=+||.++.++..+|+..|..+|...
T Consensus 116 v~g~~~~-----~~~~~~~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k~----------------- 172 (493)
T TIGR03708 116 LEGRIDE-----AKLDSHIEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPETR----------------- 172 (493)
T ss_pred hcCCCCH-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc-----------------
Confidence 1110000 001112234455666777667666 88999999999999999987554321
Q ss_pred CCCCccccCCCCcHHHHHH--HHHHHHHhcHHHHHHHh-hcCcEEEEeCCCC
Q 025937 184 VTGEPLIQRKDDTAAVLKS--RLEAFHKQTEPVIDYYS-KKGIVAQLHAEKP 232 (246)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 232 (246)
=..+++.+.. +...|......+...-. +...+++|+++..
T Consensus 173 ---------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK 215 (493)
T TIGR03708 173 ---------WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDD 215 (493)
T ss_pred ---------cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 1223333333 34556655554444322 2347899998754
No 185
>PHA03136 thymidine kinase; Provisional
Probab=97.92 E-value=0.00088 Score=57.70 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 137 KKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 137 ~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
+.||.+|+|+++++++.+|+.+|..
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 5789999999999999999999854
No 186
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=1e-05 Score=60.99 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+..+.|+++|+|||||||++..+++.+.-
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 45689999999999999999999998843
No 187
>CHL00181 cbbX CbbX; Provisional
Probab=97.91 E-value=5.5e-05 Score=63.60 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355679999999999999999998875
No 188
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.90 E-value=1.3e-05 Score=65.60 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+.|.+|.+.|++|+||||.|+.|+..+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 46888999999999999999999999877
No 189
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.89 E-value=1.9e-05 Score=71.41 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=43.6
Q ss_pred cccccCCC-CchhHHHHHHHHhhc---CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
.|.++.+. -+.+...++..|+.. ...+..+.+|.||+||||||..+.||+.+|+.+.
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 34444444 366778888999884 3344568899999999999999999999997655
No 190
>PRK09169 hypothetical protein; Validated
Probab=97.89 E-value=0.00024 Score=72.18 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=76.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
....|+|+|.+|+||||+++.|+..+++.+++.|..+.+. .|..|.+.+...+ ...+.....+.+.+.
T Consensus 2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr----- 2176 (2316)
T PRK09169 2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR----- 2176 (2316)
T ss_pred hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc-----
Confidence 3458999999999999999999999999999998888763 4566776666544 556666666665553
Q ss_pred cceEec--CCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 111 KGFILD--GFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 111 ~g~iid--~~~~~-~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
...||. |+... ..... .+...| ++||+..+.+.+.+|+.+.
T Consensus 2177 ~~vVLSTGGGav~~~enr~----~L~~~G----lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2177 WEVVLPAEGFGAAVEQARQ----ALGAKG----LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred CCeEEeCCCCcccCHHHHH----HHHHCC----EEEEEECCHHHHHHHhccC
Confidence 234442 33222 22333 333333 7999999999999998754
No 191
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.89 E-value=7.9e-05 Score=61.37 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~ 68 (246)
+|.|.|++||||||+++.|++.++ ..+++.|+.-+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 488999999999999999998873 45677765544
No 192
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.88 E-value=5.9e-05 Score=59.90 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=57.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC------cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHH-HHHHHHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG-IIDEAMK 105 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~------~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~~~l~ 105 (246)
++|+|.|-|+|||||.|..|++.+. ...|.-++-+ .+.....+|..-.+ ..+.. +....-.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~desl--g~~~ns~y~~s~~E----------K~lRg~L~S~v~R 69 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESL--GIEKNSNYGDSQAE----------KALRGKLRSAVDR 69 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhc--CCCCcccccccHHH----------HHHHHHHHHHHHh
Confidence 5899999999999999999998872 1222221110 01111111111111 11111 2222222
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+..+..+|+|......-..-.|--..+.... .-.+|+..||.+.+.+.-..|.
T Consensus 70 ~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~t-t~Cvv~t~vp~e~~r~~Ns~~~ 123 (281)
T KOG3062|consen 70 SLSKGDIVIVDSLNYIKGFRYELYCEAKAART-TYCVVHTAVPQELCREWNSERE 123 (281)
T ss_pred hcccCcEEEEecccccccceeeeeeehhccce-eEEEEEecCCHHHHHHhcccCC
Confidence 33445667777653322111101001111222 2378999999999999876664
No 193
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.88 E-value=1.7e-05 Score=68.03 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 16 DLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+.+.+...+... ...++++++|.|||||||||+++.|+..++.
T Consensus 58 ~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 58 EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345555566553 1345678999999999999999999999854
No 194
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.86 E-value=1.7e-05 Score=61.44 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC--cceeehH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLATG 64 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~~ 64 (246)
++|+|+|+|||||||+|..++..++ +.++...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 5799999999999999999999987 4455543
No 195
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.81 E-value=1.9e-05 Score=68.86 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
.|..|+|.||||+|||++++.|++.++.+++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4578999999999999999999999999888775
No 196
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.81 E-value=3.5e-05 Score=61.63 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcce-eehHHHHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVA 72 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~-i~~~~l~~~~~~ 72 (246)
++|+|+|.|||||||+++.+.+. |.++ +++++-++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 58999999999999999999765 5555 999888887665
No 197
>PLN02840 tRNA dimethylallyltransferase
Probab=97.80 E-value=2.4e-05 Score=68.44 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
..++++|+|.||+||||||++..|++.++..+|+.|.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 3556689999999999999999999999988887754
No 198
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.78 E-value=1.7e-05 Score=60.89 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=24.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~ 71 (246)
+|+|+|++|+||||+++.|++. |++++ .+..+..+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~ 35 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREII 35 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHH
Confidence 5899999999999999999998 98877 45554433
No 199
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00093 Score=49.96 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+++..||++|.+||||||++-.|.+.+
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 47888999999999999999999998877
No 200
>PRK06761 hypothetical protein; Provisional
Probab=97.77 E-value=2.6e-05 Score=65.04 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+++|+|.|+|||||||+++.|++.++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 468999999999999999999999964
No 201
>PRK04195 replication factor C large subunit; Provisional
Probab=97.73 E-value=4.9e-05 Score=68.65 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=43.1
Q ss_pred ccccccCCC-CchhHHHHHHHHhhc--CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 4 SSAANLEDV-PSVDLMTELLRRMKC--ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
++|.++.+. -..+....+..++.. .+.++..++|.||||+||||+++.|++.+++.++.+
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 345544444 345555666666653 334477899999999999999999999999876644
No 202
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.73 E-value=6.8e-05 Score=59.36 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=58.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHH-HHHccCchHHHH-------------HHHHHcCCCcCHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA-AVAAKTPLGIKA-------------KEAMDKGELVSDDLVVG 98 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~-~~~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~ 98 (246)
.+++|.||+|+|||.++-.||+++|.++|+.|.+..- .+. +-.|+.. ...+..|. ++.+...+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~--v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~ 78 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS--VGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHE 78 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT--TTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc--cccCCCCHHHHcccceeeeccccccCCC-cCHHHHHH
Confidence 4789999999999999999999999999998654221 111 1011111 12233343 55555666
Q ss_pred HHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHH-HHHHHhc
Q 025937 99 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV-LEERITG 158 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~-~~~Rl~~ 158 (246)
.+...+.......++|++|.-.+. ...+.+-........-.+..+.+++.. -+.|..+
T Consensus 79 ~Li~~v~~~~~~~~~IlEGGSISL--l~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~ 137 (233)
T PF01745_consen 79 RLISEVNSYSAHGGLILEGGSISL--LNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKR 137 (233)
T ss_dssp HHHHHHHTTTTSSEEEEEE--HHH--HHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHH
T ss_pred HHHHHHHhccccCceEEeCchHHH--HHHHHhcccccCCCeEEEEEEECCChHHHHHHHHH
Confidence 666677766667899999863222 111111111101122256777777654 3444433
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=3e-05 Score=56.86 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+..++|.|||||||||+++.++..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4589999999999999999999998543
No 204
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.6e-05 Score=65.18 Aligned_cols=28 Identities=25% Similarity=0.562 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...++|++.||||+||||+|+.||+++.
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 3446899999999999999999999984
No 205
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5.4e-05 Score=69.29 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHcCcce--eehHH
Q 025937 15 VDLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGD 65 (246)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~--i~~~~ 65 (246)
.|+...++.++.. ....+++++|.||||+|||++++.+|+.+|-.+ ||++-
T Consensus 417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 417 EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 4556666666662 567889999999999999999999999998654 45543
No 206
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.69 E-value=3.5e-05 Score=67.34 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=30.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
|..|+|.||||+||||+++.|++.++.+++.++
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 578999999999999999999999998877664
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.69 E-value=5.3e-05 Score=62.92 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
+..++|.|+||+|||++++.|++.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 346789999999999999999999987665
No 208
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=6.3e-05 Score=67.43 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=36.6
Q ss_pred ccccccCCCCchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 4 SSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
++|.++.+.--.++.....+.+-...+.+..++|.||||+||||+|+.+++.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3555555553333333333333334455567899999999999999999999875
No 209
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.68 E-value=3.6e-05 Score=57.38 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.0
Q ss_pred EEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
|+|.|+||+|||++++.+++.++..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 7899999999999999999999876543
No 210
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.67 E-value=4e-05 Score=64.12 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=29.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
+|+|+||+|||||+++..|++.++..+|++|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 47999999999999999999999988898865
No 211
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=8.1e-05 Score=68.26 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=35.3
Q ss_pred hHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 16 DLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
+....+..|... ...++++++|.||||+|||++++.+|+.+|-.++.
T Consensus 330 kVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 330 KVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 334444444441 34666899999999999999999999999866653
No 212
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.66 E-value=9.9e-05 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=20.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
....++|.|++|+|||++++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999986
No 213
>PLN02748 tRNA dimethylallyltransferase
Probab=97.65 E-value=5.3e-05 Score=67.43 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
...+++|+|+||.|||||+++..||+.++..+|+.|.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 3555689999999999999999999999999998864
No 214
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00095 Score=56.80 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=40.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHHHHHHccC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKT 75 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~~~~~~~~ 75 (246)
+-.+|+=|+|.||||+|||-+|+.+|...+..+| ..++++++++..+.
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 5578888999999999999999999999987766 45688888776543
No 215
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.63 E-value=0.0005 Score=55.69 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=82.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCc---ceeehHHHHHHHHHccCchHHHHHHHHHcCCC--cCHHHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL--VSDDLVVGIIDEA 103 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~---~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~ 103 (246)
...|.+|+|.|..||||+.+.+.|.+.++- .+.+...--.+.. ....+.+.....=..|.. ....+-...+..+
T Consensus 28 ~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~I~if~rSWY~~~l~~r 106 (228)
T PF03976_consen 28 AGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEEL-RRPFLWRFWRALPARGQIGIFDRSWYEDVLVER 106 (228)
T ss_dssp HHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHH-TS-TTHHHHTTS--TT-EEEEES-GGGGGTHHH
T ss_pred cCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHc-CCCcHHHHHHhCCCCCEEEEEecchhhHHHHHH
Confidence 445589999999999999999999998853 3333321111100 011111111111111100 0000111111111
Q ss_pred HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCC
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~ 183 (246)
+...... ..+.....+...+++.|..-|..+ +=+||.++.++..+|+..+..+|.+-
T Consensus 107 v~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~~----------------- 163 (228)
T PF03976_consen 107 VEGFIDE-----AEWERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLKR----------------- 163 (228)
T ss_dssp HTTSSTH-----HHHHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCCG-----------------
T ss_pred HhcCCCH-----HHHHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCcccc-----------------
Confidence 1110000 001122344556667777767666 88999999999999999887554331
Q ss_pred CCCCccccCCCCcHHHHHH--HHHHHHHhcHHHHHHHh-hcCcEEEEeCCCC
Q 025937 184 VTGEPLIQRKDDTAAVLKS--RLEAFHKQTEPVIDYYS-KKGIVAQLHAEKP 232 (246)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 232 (246)
-..++..+.. +...|......+.+.-+ ....+++|+++..
T Consensus 164 ---------wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk 206 (228)
T PF03976_consen 164 ---------WKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDK 206 (228)
T ss_dssp ---------GG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSH
T ss_pred ---------ccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCH
Confidence 1223343333 35666666655554333 3457999998754
No 216
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00019 Score=63.94 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhh-------cCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 15 VDLMTELLRRMK-------CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 15 ~~~~~~~~~~~~-------~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.+...|+..+.+ .+.+-|+=|+|+||||+|||-+++.+|-+-|++++.+
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 344566666665 2678888999999999999999999999999988864
No 217
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.61 E-value=0.00011 Score=63.18 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 69 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~~ 69 (246)
-+.|..+.|.||||+|||.+|+.++..+|+.++ +..+++.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 477888899999999999999999999987654 56666544
No 218
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0012 Score=61.89 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=37.1
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
++.++.++ -+.++.+...+.+. ..+.+..++|.|++|+||||+++.|++.+++.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~-~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALD-GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34444443 33444444455554 34556678899999999999999999999874
No 219
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00029 Score=65.56 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=39.0
Q ss_pred hHHHHHHHHhh-------cCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 16 DLMTELLRRMK-------CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 16 ~~~~~~~~~~~-------~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+.+.|..++.+ .+.+.|+=++|.||||+|||-+|+.+|-+=|++++++
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 34455555554 3678888899999999999999999999999998875
No 220
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0011 Score=61.18 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=33.8
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
++++.+...+.+. ..+.+..++|.|++|+||||+++.|++.+++
T Consensus 21 Qe~vv~~L~~al~-~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 21 QEHVVRALTHALE-QQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred cHHHHHHHHHHHH-hCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444454555554 4556678899999999999999999999987
No 221
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00046 Score=58.81 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=31.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
-++++-|++.||||+|||-+|+.+|++-|..++++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 46778899999999999999999999999877765
No 222
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.58 E-value=0.00012 Score=62.35 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=37.4
Q ss_pred ccccccCCCCch-hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 4 SSAANLEDVPSV-DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
++|.++.++--. +........+. ....+..+++.|+||+||||+++.+++.++..+
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~-~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVK-KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHh-cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 556666666333 33333344443 344556777799999999999999999886543
No 223
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00049 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 44579999999999999998888765
No 224
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.57 E-value=0.00014 Score=61.71 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=34.0
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..+....+...+. . ...|+|.|+||+||||+++.||+.+|++++.+
T Consensus 50 ~~~~~~~vl~~l~--~--~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 50 DKATTKAICAGFA--Y--DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CHHHHHHHHHHHh--c--CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3444444444442 2 34699999999999999999999999877643
No 225
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00081 Score=58.80 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+.+|+|.||.|+||||.+..||..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999865
No 226
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00012 Score=65.32 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=36.2
Q ss_pred cccccCCCC-chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDVP-SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.++.++- ++++.....+.+. ..+.+..++|.||+|+||||+|+.+|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~-~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALK-SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 444444442 2333333344443 34455678999999999999999999999874
No 227
>PRK10646 ADP-binding protein; Provisional
Probab=97.53 E-value=0.00024 Score=53.72 Aligned_cols=46 Identities=24% Similarity=0.187 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 13 PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+..+......+.+...-+++.+|+|.|.-|+||||+++.+++.+|+
T Consensus 9 ~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 9 PDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4555556666666644566679999999999999999999999986
No 228
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00041 Score=62.75 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=34.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVA 72 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~~~~~ 72 (246)
-..|-=|+|.||||||||-+|+.+|.+-|..++++ -+++.++..
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 34456789999999999999999999998877765 356655443
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.52 E-value=0.0034 Score=51.47 Aligned_cols=123 Identities=13% Similarity=0.230 Sum_probs=67.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHHHHHccCchHHHHHHHHHcCCCc
Q 025937 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV 91 (246)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 91 (246)
+...+.+++.........++|.|++|+|||+++..++..+ | +.++++.+++... +..+....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l-----------~~~~~~~~-- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM-----------KDTFSNSE-- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH-----------HHHHhhcc--
Confidence 3344444443222233478999999999999999999987 3 3566777776542 11111110
Q ss_pred CHHHHHHHHHHHHcCCCCCcceEecCCCCC---HHHHHHHHHHHHh-cC-CCcCEEEEEecCHHHHHHHHhcC
Q 025937 92 SDDLVVGIIDEAMKKPSCQKGFILDGFPRT---EVQAQKLDEMLEK-QG-KKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~~g~iid~~~~~---~~~~~~l~~~l~~-~~-~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
.....++. .+ ......|||.+... ......+-.++.. +. ..| .+|-=+.+.+.+.+++..|
T Consensus 151 --~~~~~~l~-~l---~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~-tiitSNl~~~~l~~~~g~r 216 (244)
T PRK07952 151 --TSEEQLLN-DL---SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRP-TGMLTNSNMEEMTKLLGER 216 (244)
T ss_pred --ccHHHHHH-Hh---ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCC-EEEeCCCCHHHHHHHhChH
Confidence 01112222 22 22456888876433 2223334444432 22 344 7777788888887766544
No 230
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.52 E-value=0.00024 Score=52.51 Aligned_cols=26 Identities=50% Similarity=0.876 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
....++|.|+||+||||+++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999987
No 231
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.00096 Score=63.72 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+++.....+.+. .++.+.-++|.|++|+||||+++.|++.+++.
T Consensus 21 e~v~~~L~~~i~-~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 21 EHVTEPLSTALD-SGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HHHHHHHHHHHH-hCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 334444444443 45556678999999999999999999999874
No 232
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0012 Score=54.95 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=35.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcce--eehHHHHHHHHHccCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAAVAAKTP 76 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~--i~~~~l~~~~~~~~~~ 76 (246)
.=|+|.||||+|||.+++.+|-.-+-.+ ++.+|++.+.+.....
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 4688999999999999999999887544 5667899887765443
No 233
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0002 Score=62.28 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=36.0
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+|.+..+. -++++.....+.+. ..+.+..++|.||+|+||||+++.+++.+++
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~-~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLS-LGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHH-cCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34444443 33444444444443 3455667899999999999999999999875
No 234
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.50 E-value=0.00013 Score=53.09 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
-+.+.+|+|.|+-||||||+++.+++.+|..
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3666899999999999999999999999864
No 235
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.49 E-value=0.00019 Score=63.06 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=35.9
Q ss_pred CchhHHHHHHHHhhc-----CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 13 PSVDLMTELLRRMKC-----ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 13 ~~~~~~~~~~~~~~~-----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
+.+++.++-..+-.+ -+....+|+|+|++||||||+++.|++.+|...+
T Consensus 195 SaT~IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 195 SGTQIRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CHHHHhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 444444444443333 2466679999999999999999999999987654
No 236
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.48 E-value=0.00011 Score=64.42 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=32.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 68 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~ 68 (246)
..+|.-|+|.||||+|||++++.++..++..++ +..++..
T Consensus 162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 466778999999999999999999999986554 4445543
No 237
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00013 Score=62.86 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...-.-.+|.||||+||||+++.||..++..+..+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 34445778999999999999999999998765533
No 238
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.48 E-value=0.00012 Score=65.82 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+-..|+-|+|.||||+|||.+++.+|..++.+++.+
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345677899999999999999999999999877654
No 239
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00015 Score=60.92 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
.++.|+|.||.+||||-++-.||+++|.++||+|.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS 36 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS 36 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecch
Confidence 45789999999999999999999999999999975
No 240
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.47 E-value=9.7e-05 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999864
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.47 E-value=0.00037 Score=56.27 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=35.8
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHH
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDML 67 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~ 67 (246)
.......+.++.. ...+..++|.|++|||||++++.++... .+.+++..++.
T Consensus 22 ~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 22 NAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred cHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3445454444432 4556789999999999999999998765 24556665443
No 242
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.47 E-value=0.008 Score=54.04 Aligned_cols=158 Identities=19% Similarity=0.153 Sum_probs=89.9
Q ss_pred cCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025937 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (246)
Q Consensus 27 ~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (246)
++.+.+.+|+|.|..+|||....++|.+.++-..+.+-.+ .+.+. .+.....+...-..
T Consensus 294 ~~~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-----~~Pt~----------------~E~~~~~lwRf~~~ 352 (493)
T TIGR03708 294 RFRKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-----AAPTD----------------EEKAQHYLWRFWRH 352 (493)
T ss_pred HhCCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-----CCcCH----------------HHHcCcHHHHHHHh
Confidence 3678899999999999999999999999986444433111 00000 00000111111111
Q ss_pred C-CCCcceEec-------------CCCCC------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 107 P-SCQKGFILD-------------GFPRT------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 107 ~-~~~~g~iid-------------~~~~~------~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
+ ..+...|+| |+... ..+...+++.|...|..+ +=+||.++.++..+|+..|..+|..
T Consensus 353 lP~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~i-vKf~LhIsk~EQ~~R~~~r~~~p~k- 430 (493)
T TIGR03708 353 IPRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIV-VKFWLHIDKEEQLRRFEERENTPFK- 430 (493)
T ss_pred CCCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEEcCHHHHHHHHHHHhcCCcc-
Confidence 1 112223333 22221 233344556666677666 8899999999999999998755432
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHH--HHHHHHhcHHHHHHHh-hcCcEEEEeCCCC
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSR--LEAFHKQTEPVIDYYS-KKGIVAQLHAEKP 232 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 232 (246)
+=..+++.+.++ ...|....+.+...-. ....+++|+++.-
T Consensus 431 -------------------------~WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK 474 (493)
T TIGR03708 431 -------------------------RYKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDK 474 (493)
T ss_pred -------------------------CCcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCCh
Confidence 113344444433 5666665555444333 3457889998744
No 243
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.45 E-value=0.00055 Score=61.78 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=26.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
.-++|+-++|.||||+|||++++.++..++.
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3456778999999999999999999999854
No 244
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.45 E-value=0.00017 Score=63.84 Aligned_cols=41 Identities=34% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..+.+. ......++|.||||+||||+++.+++.++..++.+
T Consensus 27 L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 27 LRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred HHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 444443 34455788999999999999999999987665543
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=97.45 E-value=0.00019 Score=61.41 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=33.7
Q ss_pred ccccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 4 SSAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++|.++.+. .+.++......... ....+.++|.||||+||||+++.+++.+
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~--~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIAR--DGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455555555 33444443333332 2233457899999999999999999987
No 246
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.44 E-value=7.8e-05 Score=54.44 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 35 LILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
++|.|+||+||||+++.||+.+|..+..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999998766544
No 247
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.44 E-value=0.00015 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 248
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.43 E-value=0.00014 Score=64.18 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=29.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
...++|.||||+|||++++.|++.++.+++.++
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 467999999999999999999999998777653
No 249
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.00019 Score=64.93 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=35.9
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+|..+.++ -++++.....+.+. ..+.+..++|.||||+||||+++.+++.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~-~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALR-QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34444444 23334444444443 4556677899999999999999999999864
No 250
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.42 E-value=0.0012 Score=62.88 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=29.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...+.-|+|.||||+|||++++.+|..++..++.+
T Consensus 484 ~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 484 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 34566799999999999999999999998776654
No 251
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.00023 Score=64.27 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=36.4
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -+..+.+...+.+. ..+.+..++|.||+|+||||+++.+++.+++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~-~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTIL-NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34434333 23334443334343 34556789999999999999999999999875
No 252
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0059 Score=52.68 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=27.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+=+++.||||+|||-+|+.+|.+-|..+|++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 4678899999999999999999999877765
No 253
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.40 E-value=0.00018 Score=63.14 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=30.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
-.+|.-++|.||||+|||++++.++..++..++.+
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 35677899999999999999999999998766543
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.40 E-value=0.00019 Score=62.45 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=29.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.+++-++|.||||+|||++++.++..++..++.+
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 4567799999999999999999999998766543
No 255
>PLN02796 D-glycerate 3-kinase
Probab=97.40 E-value=0.00015 Score=61.95 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 66 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l 66 (246)
++|.+|.|.|++||||||+++.|+..+. ...+++|+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 5788999999999999999999998874 234555543
No 256
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00081 Score=61.89 Aligned_cols=118 Identities=21% Similarity=0.398 Sum_probs=68.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHHHHHHccCchHHHHHHHHHc--------------------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDK-------------------- 87 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~~~~~~~~~~g~~~~~~~~~-------------------- 87 (246)
+-+.-|+|.||||+|||.++..++...++.+|++ -+++.+.+.+..+ .++..|..
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq---~vR~lF~rA~~a~PCiLFFDEfdSiAPk 775 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ---NVRDLFERAQSAKPCILFFDEFDSIAPK 775 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH---HHHHHHHHhhccCCeEEEeccccccCcc
Confidence 3345689999999999999999999999988886 3677777664332 11112111
Q ss_pred -C---CCcCHHHHHHHHHHHHcCCCCCcc-eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 88 -G---ELVSDDLVVGIIDEAMKKPSCQKG-FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 88 -~---~~~~~~~~~~~l~~~l~~~~~~~g-~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
| .=+.|..+.+++. .+.....-.| +|+....+.. .++.++.. ..+.|..|+++.|.+.-.-++
T Consensus 776 RGhDsTGVTDRVVNQlLT-elDG~Egl~GV~i~aaTsRpd----liDpALLR-pGRlD~~v~C~~P~~~eRl~i 843 (952)
T KOG0735|consen 776 RGHDSTGVTDRVVNQLLT-ELDGAEGLDGVYILAATSRPD----LIDPALLR-PGRLDKLVYCPLPDEPERLEI 843 (952)
T ss_pred cCCCCCCchHHHHHHHHH-hhccccccceEEEEEecCCcc----ccCHhhcC-CCccceeeeCCCCCcHHHHHH
Confidence 1 1144455555443 3333332344 4444333332 22222222 257899999999887544333
No 257
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.38 E-value=0.0004 Score=58.82 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=26.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+..+..++|.||||+|||++++.++..++..
T Consensus 27 ~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 27 QEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445578999999999999999999999754
No 258
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.37 E-value=0.00052 Score=51.37 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=35.9
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
.++...+........-+.+.+|+|.|.-||||||+++-+++.+|.
T Consensus 7 ~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 7 DEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 445555555555545577889999999999999999999999985
No 259
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.37 E-value=0.00077 Score=54.60 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHH
Q 025937 13 PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDM 66 (246)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l 66 (246)
+...+......+.. .......++|.|++|+|||++++.++... .+.+++..+.
T Consensus 24 ~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 24 ENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 33344443334333 22344578999999999999999999876 5566666543
No 260
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.36 E-value=0.00045 Score=50.32 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+++|.++.+-|++|+|||.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57888888999999999999999999985
No 261
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.36 E-value=0.00014 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHhHc
Q 025937 35 LILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 35 I~l~G~~gsGKsT~~~~La~~~ 56 (246)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998865
No 262
>PF13245 AAA_19: Part of AAA domain
Probab=97.36 E-value=0.00022 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCChh-HHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKG-TQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKs-T~~~~La~~~ 56 (246)
...+++|.|||||||| |+.+.++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457888999999999 5555555544
No 263
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.36 E-value=0.00021 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+...++|.||+|+|||.+++.|++.+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568899999999999999999999984
No 264
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0025 Score=57.45 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
..+-..-.+|.||.|+||||+++.+|+.+++..
T Consensus 34 ~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 34 NGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 445555678999999999999999999999875
No 265
>PRK06526 transposase; Provisional
Probab=97.35 E-value=0.002 Score=53.20 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=29.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 69 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~ 69 (246)
..+..++|.||||+|||+++..|+... | +.++++.+++..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 345689999999999999999987764 3 334455555544
No 266
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0003 Score=64.83 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=38.0
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..++ -...+.+...+.+. ..+.+..++|.||+|+||||+|+.+|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~-~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALE-RGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44444444 33444455555554 44556788999999999999999999999874
No 267
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00018 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=23.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...++-+++|+||+||||||+.++|..
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456778999999999999999999954
No 268
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.34 E-value=0.00022 Score=62.69 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=27.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..|+|.||||+|||++++.||+.++.++..+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 5799999999999999999999998876544
No 269
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.34 E-value=0.00031 Score=63.71 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=30.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...+.-++|.||||+|||++++.++...+.+++.+
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 45666799999999999999999999998876654
No 270
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.34 E-value=0.00043 Score=59.43 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=27.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
...+..++|.||||+||||+++.++..++..+
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34456889999999999999999999998754
No 271
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0003 Score=63.76 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..++ -++.+.+...+.+. ..+.+..++|.||+|+||||+++.|++.+++.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~-~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALD-QQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHH-hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44444444 34445555555554 44556678999999999999999999999874
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.34 E-value=0.0062 Score=52.23 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=32.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 69 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~~ 69 (246)
....++|.|++|+|||.++..++..+ .+.++++.+++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 34789999999999999999999986 3567788777665
No 273
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0017 Score=60.30 Aligned_cols=127 Identities=21% Similarity=0.366 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhhc----------CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehH--HHHHHHHHccCchHHHHH
Q 025937 15 VDLMTELLRRMKC----------ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAAKTPLGIKAK 82 (246)
Q Consensus 15 ~~~~~~~~~~~~~----------~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~--~l~~~~~~~~~~~g~~~~ 82 (246)
++.+.++++.+.. .-+++-=|+|.||||+|||-+|+.+|-++.+.++|+. +++--++...++ -++
T Consensus 678 eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~---NVR 754 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEE---NVR 754 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHH---HHH
Confidence 4566667766662 2244567999999999999999999999988888762 454433332111 111
Q ss_pred HHHH--------------------------cCCCcCHHHHHHHHHHHHcCCC---CCcceEecCCCCCHHHHHHHHHHHH
Q 025937 83 EAMD--------------------------KGELVSDDLVVGIIDEAMKKPS---CQKGFILDGFPRTEVQAQKLDEMLE 133 (246)
Q Consensus 83 ~~~~--------------------------~~~~~~~~~~~~~l~~~l~~~~---~~~g~iid~~~~~~~~~~~l~~~l~ 133 (246)
+.|+ +.+-+.|..+.+++.+- .... ....|||....|..--.. .+.
T Consensus 755 ~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL-Dgls~~~s~~VFViGATNRPDLLDp----ALL 829 (953)
T KOG0736|consen 755 EVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL-DGLSDSSSQDVFVIGATNRPDLLDP----ALL 829 (953)
T ss_pred HHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh-hcccCCCCCceEEEecCCCccccCh----hhc
Confidence 1111 11335566666666543 3332 336788876655432222 222
Q ss_pred hcCCCcCEEEEEecCHH
Q 025937 134 KQGKKVDKVLNFAIDDA 150 (246)
Q Consensus 134 ~~~~~~~~vI~L~~~~e 150 (246)
. -.+||..+|+..+.+
T Consensus 830 R-PGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 830 R-PGRFDKLVYVGPNED 845 (953)
T ss_pred C-CCccceeEEecCCcc
Confidence 2 368999999998765
No 274
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00032 Score=62.99 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=36.3
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -++.+.+...+.+. ..+.+.-++|.||+|+||||+++.+|+.+++.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~-~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFT-LNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-cCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 34444444 23334443444443 44556689999999999999999999988763
No 275
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00053 Score=57.23 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=41.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcce--eehHHHHHHHHHccCchHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAAVAAKTPLGIKAKEAMD 86 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~--i~~~~l~~~~~~~~~~~g~~~~~~~~ 86 (246)
.-++|+.+.|.||||.|||-+|+.++..+|+.+ ++++.+..+.+. +.++.+++++.
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG---EsaRlIRemf~ 219 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG---ESARLIRDMFR 219 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc---cHHHHHHHHHH
Confidence 347888999999999999999999999998644 466666665432 34455555544
No 276
>PRK09087 hypothetical protein; Validated
Probab=97.32 E-value=0.00067 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~ 67 (246)
.+.++|.|++|||||++++.+++..+..+++..++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 456899999999999999999999998888886443
No 277
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.32 E-value=0.00038 Score=59.73 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=29.8
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...+.+...+.+. ....+.++|.||||+||||+++.+++.+.
T Consensus 20 ~~~~~~~L~~~~~--~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVD--SPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444454555553 23334688999999999999999999873
No 278
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.31 E-value=0.00041 Score=57.53 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHhhc-CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 21 LLRRMKC-ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 21 ~~~~~~~-~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+.....+ ...++..++|.|++|+||||+++.++..+.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4444443 244455899999999999999999999875
No 279
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.31 E-value=0.00036 Score=63.28 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=31.1
Q ss_pred hHHHHHHHHhh----cCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMK----CASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~----~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+..+..+.. ....+.++++|.||||+||||+++.|++.+
T Consensus 83 e~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 83 EAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 34444455553 135666799999999999999999999976
No 280
>PRK08116 hypothetical protein; Validated
Probab=97.29 E-value=0.01 Score=49.45 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=30.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 69 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~ 69 (246)
..-++|.|++|+|||.++..++..+ + +.++++.+++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3458999999999999999999875 3 456677776654
No 281
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.29 E-value=0.00028 Score=60.42 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
...|+|.|++|+||||+++.|+..++..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999999998765
No 282
>PHA02244 ATPase-like protein
Probab=97.28 E-value=0.00033 Score=60.41 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=30.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l 66 (246)
+..|+|.||+|+|||++++.++..++.+++.+..+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 34688899999999999999999999988877544
No 283
>PRK06620 hypothetical protein; Validated
Probab=97.28 E-value=0.00059 Score=54.88 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
..++|.||+|||||++++.++...+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 468999999999999999999888765544
No 284
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.27 E-value=0.00031 Score=62.36 Aligned_cols=34 Identities=38% Similarity=0.617 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
..++.-++|.||||+|||++++.++..++..++.
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 3567789999999999999999999999766553
No 285
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.27 E-value=0.00026 Score=61.90 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 66 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l 66 (246)
.++|.+|.|.|+.||||||+++.|...+. ...|+.|++
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 45788999999999999999999987762 345666654
No 286
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.27 E-value=0.00051 Score=61.35 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=36.6
Q ss_pred chhHHHHHHHHhh-----cCCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 14 SVDLMTELLRRMK-----CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 14 ~~~~~~~~~~~~~-----~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
|...+.++..|+. .-..+..+.+|+||+||||||..+.|++.+|+.++
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3445566777776 12344457888999999999999999999998655
No 287
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.27 E-value=0.0058 Score=47.73 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=63.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHc------CcceeehHHHHHHHHHccCchH--------HHHHHH---HHcCCCcCHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY------CLCHLATGDMLRAAVAAKTPLG--------IKAKEA---MDKGELVSDDLV 96 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~------~~~~i~~~~l~~~~~~~~~~~g--------~~~~~~---~~~~~~~~~~~~ 96 (246)
++.++|.|++||||+|+++.-.. .+.+...|+++.-+.+....-. ..++.. +.....+|+..
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv- 81 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV- 81 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh-
Confidence 57899999999999999986543 2355566666532211111111 111111 11111122211
Q ss_pred HHHHHHHHcC-CCCC--cc-eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 97 VGIIDEAMKK-PSCQ--KG-FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 97 ~~~l~~~l~~-~~~~--~g-~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.++.. .+++ +. +++|....-......+.++.+..|..+ .+||+.++-+++.++-.-|.
T Consensus 82 -----rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciF-G~Iflas~ide~LqaNS~Rs 143 (291)
T KOG4622|consen 82 -----RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIF-GIIFLASGIDEALQANSHRS 143 (291)
T ss_pred -----eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCee-eeeehhhhHHHHHHhccccc
Confidence 01111 1122 33 344433222233334555666778777 89999999999999877663
No 288
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.00045 Score=62.91 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=31.6
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+..+.....+.+. ..+.+..++|.||+|+||||+++.+++.+++
T Consensus 21 q~~~v~~L~~~i~-~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALE-TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444443 3345566899999999999999999999875
No 289
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.00052 Score=60.48 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=36.0
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -++.+.....+.+. .++-+.-++|.||+|+||||+++.+|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~-~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLR-MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHH-hCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444333 33344444444443 34455669999999999999999999999774
No 290
>PF05729 NACHT: NACHT domain
Probab=97.25 E-value=0.00026 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+++|.|++|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999877
No 291
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.25 E-value=0.00047 Score=56.36 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=26.5
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.+.-...+..+|.|+||||+||||+...|...|
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 333333344567899999999999999999998887
No 292
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.24 E-value=0.00026 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
|.+|+|.||+||||||.+..||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5789999999999999999999887
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.23 E-value=0.00062 Score=58.23 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...++.+|.|.|+|||||||++..|...+
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999987776
No 294
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.22 E-value=0.00043 Score=53.83 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=23.4
Q ss_pred HHHHHHHhh-cCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 18 MTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+....+... .....+..++|.|++|+|||++.+.+.+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 333444443 245667899999999999999999888776
No 295
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.22 E-value=0.00019 Score=54.84 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=25.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...++-+|.|+||+||||||+.+.+|.-.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 45777899999999999999999998854
No 296
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.19 E-value=0.00042 Score=53.64 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+++++.|.|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4566899999999999999999987763
No 297
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.19 E-value=0.00051 Score=57.85 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
.+++|+|+||.|||||.+|-.||++. ..+||.|.
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS 36 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK-AEIINVDS 36 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-CcEEeccH
Confidence 34689999999999999999999994 58888864
No 298
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.19 E-value=0.00071 Score=64.64 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 15 VDLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
+++...+..+... ...+++.++|.||||+|||++++.|++.++..++.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 4445555554431 23345689999999999999999999999876553
No 299
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.19 E-value=0.00032 Score=52.41 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++|+|+|+.||||||++++|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 47999999999999999999764
No 300
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.19 E-value=0.00048 Score=48.87 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIK 53 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La 53 (246)
.+...++|.|++||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 455789999999999999999987
No 301
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.00088 Score=55.32 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=34.1
Q ss_pred chhHHHHHHHHhhc---CCCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 14 SVDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
.+++..+..-++.. .....-.++|.||||.||||+|..+|.++|..+
T Consensus 31 Q~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 31 QEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 44444444444442 344445899999999999999999999998643
No 302
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.00058 Score=64.93 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=33.4
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+..+.....+.+. ..+-+..++|.||+|+||||+++.|++.+++.
T Consensus 21 Qe~Iv~~LknaI~-~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALT-QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHH-hCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 3444444444443 34556678999999999999999999999874
No 303
>CHL00176 ftsH cell division protein; Validated
Probab=97.17 E-value=0.00058 Score=63.47 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=30.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...++-++|.||||+|||++++.+|...+.+++.+
T Consensus 213 ~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 213 AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45567899999999999999999999998877654
No 304
>PHA02624 large T antigen; Provisional
Probab=97.15 E-value=0.001 Score=60.67 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
..++.+.+-.+.+++..++|.||||+||||+++.|.+-+|-..+++.
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 33344444445566679999999999999999999999955556653
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.15 E-value=0.00023 Score=58.25 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.7
Q ss_pred EECCCCCChhHHHHHHHhHcC
Q 025937 37 LVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 37 l~G~~gsGKsT~~~~La~~~~ 57 (246)
|+||+||||||+|+.+++.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999873
No 306
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.15 E-value=0.013 Score=49.79 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (246)
...-++|.|++|+|||.++..++..+ | +.++++.+++... +..+..+. ....+. .+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l-----------k~~~~~~~------~~~~l~-~l- 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL-----------KNSISDGS------VKEKID-AV- 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH-----------HHHHhcCc------HHHHHH-Hh-
Confidence 45679999999999999999999887 4 3556777776542 22232221 112221 22
Q ss_pred CCCCCcceEecCCCCC---HHHH-HHHHHHHHhc--CCCcCEEEEEecCHHHHHHHHh
Q 025937 106 KPSCQKGFILDGFPRT---EVQA-QKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~---~~~~-~~l~~~l~~~--~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
......|||.+... .... ..|..++... ...| .+|-=+.+.+.+.+++.
T Consensus 216 --~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 216 --KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHLA 270 (306)
T ss_pred --cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHh
Confidence 23456888877432 2222 3334343321 3445 77777888898888874
No 307
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00089 Score=55.69 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-+++.+...-......+|.|+|+||+||||+...|...|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 344555554455666799999999999999999999887
No 308
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0013 Score=53.76 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAV 71 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~~~~ 71 (246)
-|+.|++.||||+|||-+++.||.+.+.+++.+ ..++-++.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 357899999999999999999999998877654 34554443
No 309
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.12 E-value=0.00079 Score=57.24 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=33.9
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+|.++.+. ...+.......++.. ...+.++|.|++|+||||+++.+++.+
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44444433 344555656666542 223357999999999999999999986
No 310
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.12 E-value=0.0015 Score=53.32 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=27.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~ 65 (246)
...++|.||+|+|||++++.++.... +.++++++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 35899999999999999999888653 46667754
No 311
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=0.0081 Score=53.67 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc-------CcceeehHHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAA 70 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~-------~~~~i~~~~l~~~~ 70 (246)
..++|.|++|+|||++++.++..+ .+.+++..+++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 359999999999999999998874 34667877766553
No 312
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.12 E-value=0.0015 Score=56.75 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-------cceeehHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGD 65 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~ 65 (246)
.++.+|+|+||.|+||||-...||.+|. +-+|++|.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 4578999999999999998888888874 45566643
No 313
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.12 E-value=0.055 Score=41.84 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=65.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCc---ceeehHHHHHHHHHccCchHHHHHHHHHcCCCc-----------------CH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV-----------------SD 93 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~---~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~ 93 (246)
+|+|+|..+|||.|++..|.+.++. ..+..++-+...... ..|..+...+..+.+- .+
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~--~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQ--EHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHH--HhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 4899999999999999999999874 246665555544432 1122222222221111 11
Q ss_pred HHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 94 ~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
..+.+.....+ ....|||++. +......+|.+. +|..+ +.|-+.+++++..+|.
T Consensus 79 ~~F~r~~~~~~----~~~v~iIsD~-Rr~~dv~~f~~~---~g~~~-~~VRV~AseetR~~Rg 132 (182)
T TIGR01223 79 GFFCRKIVEGI----SQPIWLVSDT-RRVSDIQWFREA---YGAVT-QTVRVVALEQSRQQRG 132 (182)
T ss_pred cHHHHHHHhcc----CCCEEEEeCC-CcccHHHHHHHH---cCCce-EEEEEecCHHHHHHHH
Confidence 22222222211 2357888775 444555555544 34444 8899999999999986
No 314
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.00058 Score=63.22 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=38.4
Q ss_pred cccccCCC-CchhHHHHHHHHhhc---CCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
.|.++.+. -+.+.+.++..++.. ...+..+++|.||+|+||||+++.++..++..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 34444444 344455666666663 22344579999999999999999999988754
No 315
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.00077 Score=62.25 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=37.5
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -++++.+...+.+. ..+.+..++|.|++|+||||+++.|++.+++.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~-~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALT-QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444333 24445554555544 44566778999999999999999999999873
No 316
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.10 E-value=0.0035 Score=51.01 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.+.-.++|.|++|+||||+|..++-
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456999999999999999865544
No 317
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.00083 Score=61.26 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
..+.+...+.+. ..+.+..++|.||+|+||||+++.+++.+++.
T Consensus 22 ~~v~~~L~~~i~-~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 22 EHVVRALTNALE-QQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HHHHHHHHHHHH-cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344444444443 34556678999999999999999999999764
No 318
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.00086 Score=61.47 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.6
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+..+.+...+.+. ..+.+.-++|.||+|+||||+|+.+|+.+.+.
T Consensus 21 Qe~iv~~L~~aI~-~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAIL-NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444444443 33455678999999999999999999998653
No 319
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.09 E-value=0.00054 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+|+|.|++||||||+.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 320
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.011 Score=52.94 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc-----C--cceeehHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRA 69 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~-----~--~~~i~~~~l~~~ 69 (246)
..++|.|++|+|||++++.++..+ + +.+++..++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 358999999999999999999886 2 456777666544
No 321
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00054 Score=57.42 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.+..|++.||.|||||-+|+.||+.+++++-=+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 345899999999999999999999999886533
No 322
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.06 E-value=0.00064 Score=54.73 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=26.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
...+..++|.|+||+||||+++.|+. ...+++.+.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 34467899999999999999999963 244455543
No 323
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.06 E-value=0.001 Score=55.42 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
+.-+..+|.||||+|||+.+..++..++.+.
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~ 85 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQ 85 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCcc
Confidence 5667899999999999999999999997743
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.06 E-value=0.013 Score=51.77 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=29.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc-----C--cceeehHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRA 69 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~-----~--~~~i~~~~l~~~ 69 (246)
..++|.|++|+|||++++.++..+ + +.+++..++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 358899999999999999998765 2 456777666544
No 325
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.05 E-value=0.0015 Score=51.00 Aligned_cols=108 Identities=24% Similarity=0.408 Sum_probs=56.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 104 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (246)
..+..++|.|++|+|||.++..++..+ .+.++++.+++...-. ....+ . ....+ ..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~-----------~~~~~-~-----~~~~~-~~l 106 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ-----------SRSDG-S-----YEELL-KRL 106 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC-----------CHCCT-T-----HCHHH-HHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc-----------ccccc-c-----hhhhc-Ccc
Confidence 455689999999999999999998765 3577888888765321 11111 1 11222 233
Q ss_pred cCCCCCcceEecCCCCCHH---HHHHHHHHHHh-cCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 105 KKPSCQKGFILDGFPRTEV---QAQKLDEMLEK-QGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~~~---~~~~l~~~l~~-~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
.. ..-.|||.+..... ....+.+++.. ++..+ .+|-=+.+++.+.+.+..+
T Consensus 107 ~~---~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~-tIiTSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 107 KR---VDLLILDDLGYEPLSEWEAELLFEIIDERYERKP-TIITSNLSPSELEEVLGDR 161 (178)
T ss_dssp HT---SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-E-EEEEESS-HHHHHT-----
T ss_pred cc---ccEecccccceeeecccccccchhhhhHhhcccC-eEeeCCCchhhHhhccccc
Confidence 22 34688998755432 22222233321 12234 6666677777777766644
No 326
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0022 Score=52.63 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=36.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVA 72 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~~~~~ 72 (246)
+--+|+=|++.||||+|||-+++.+|.+.+..+|.+ ++++++...
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvg 253 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG 253 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhh
Confidence 446777899999999999999999999999877753 466666543
No 327
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.04 E-value=0.00082 Score=54.05 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.+...-..+.+.+|.||||+||||+...+...+
T Consensus 7 ~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 34444333333378999999999997655555544
No 328
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.016 Score=47.87 Aligned_cols=39 Identities=31% Similarity=0.562 Sum_probs=32.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 69 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~ 69 (246)
.+..++|.|+||+|||.++..++..+ | +.++.+.+++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 77799999999999999999888876 4 356778787765
No 329
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.02 E-value=0.0011 Score=62.79 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
..++|.||||+|||++++.||+.++.+++
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 36899999999999999999999976554
No 330
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.01 E-value=0.00074 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
|..|.|.|++||||||+.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998875
No 331
>PHA03134 thymidine kinase; Provisional
Probab=97.01 E-value=0.075 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+-.+|.|.|+.|.||||.++.|+..
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 3357899999999999999999874
No 332
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.00092 Score=62.12 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=37.9
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -+.++.+...+.+. ..+.+..++|.|++|+||||+++.|++.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~-~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALD-EGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 34444333 34445555555554 34556689999999999999999999998764
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.00 E-value=0.0093 Score=52.98 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=25.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc-------CcceeehHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGD 65 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~-------~~~~i~~~~ 65 (246)
+.+++|.||+|+||||.+..||..+ .+.+++.|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4589999999999999888887654 245566644
No 334
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0011 Score=60.86 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=37.7
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.++.+. -++.+.+...+.+. ..+.+..++|.||+|+||||+++.|++.+++.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~-~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALD-AGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34444433 34444555555554 34566678999999999999999999999864
No 335
>PRK06893 DNA replication initiation factor; Validated
Probab=97.00 E-value=0.0025 Score=51.84 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~ 64 (246)
..+.++|.||||+|||++++.++..+ +..++++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34578999999999999999999875 55666663
No 336
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0028 Score=50.77 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=28.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLR 68 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~ 68 (246)
.-|+|.||+|+||+|+.++|-+.++. ..+++....+
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr 74 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTR 74 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCC
Confidence 68999999999999999999999973 5555544333
No 337
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.99 E-value=0.00072 Score=54.45 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=26.5
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+.++..-.++-+++|+||+||||||+...++--
T Consensus 21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3334444577789999999999999999988653
No 338
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.99 E-value=0.0015 Score=62.27 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 15 VDLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
+++.+.+..+... ...++.+++|.||||+||||+++.+++.++..++
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3444444444441 2245668999999999999999999999987664
No 339
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0011 Score=61.08 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=34.8
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
+.++.+...+.+. ..+.+.-++|.||+|+||||+++.|++.+++..
T Consensus 29 q~~~v~~L~~~~~-~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFE-TGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3444455555554 445566899999999999999999999998753
No 340
>PRK13695 putative NTPase; Provisional
Probab=96.99 E-value=0.00069 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
|+|+|+|++|+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987665
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.99 E-value=0.00096 Score=52.42 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.+..++|.|++||||||+.+.|...+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4556799999999999999999998765
No 342
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.99 E-value=0.0021 Score=52.55 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~ 64 (246)
+-.++..++|.|+||||||++|..++-.. | ..+++.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 34567799999999999999998765432 3 4556553
No 343
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00076 Score=56.98 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
=.|+.|+++||.|+|||-+|++||+--|.|++.+
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred cCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4578999999999999999999999888877644
No 344
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0011 Score=61.50 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+.+.....+.+. ..+.+..++|.|++|+||||+++.+++.+++.
T Consensus 22 e~vv~~L~~~l~-~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 22 EHVLTALANALD-LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 334443444443 34555668999999999999999999999874
No 345
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0012 Score=54.72 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=39.9
Q ss_pred cCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceee--hHHHHHHHHHccCch
Q 025937 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA--TGDMLRAAVAAKTPL 77 (246)
Q Consensus 27 ~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~--~~~l~~~~~~~~~~~ 77 (246)
++-++|+=+++.|+||+|||-+|+.+|......++. -++++++.+..+..+
T Consensus 214 mGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpkl 266 (440)
T KOG0726|consen 214 MGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKL 266 (440)
T ss_pred cCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHH
Confidence 467889999999999999999999999988765543 357777766554433
No 346
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.97 E-value=0.00066 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++|.|.|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998876
No 347
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.97 E-value=0.00069 Score=55.61 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=33.3
Q ss_pred cCCCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHH
Q 025937 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRA 69 (246)
Q Consensus 27 ~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~ 69 (246)
-+.++|..|++.|+.||||||++++|-.++. --+|+.|--+++
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 3578889999999999999999999988772 123566655544
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.97 E-value=0.00073 Score=52.29 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=24.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHc---C--cceeehH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~ 64 (246)
++++.|+||+||||++..++..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999998876 4 3445654
No 349
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0007 Score=57.80 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-..+-+++|.||+||||||+.+.+|--.
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566799999999999999999998643
No 350
>PRK08181 transposase; Validated
Probab=96.97 E-value=0.0085 Score=49.88 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=30.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 69 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~ 69 (246)
....++|.||+|+|||.++..++... | +.++++.+++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 44579999999999999999998644 4 566778777765
No 351
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.97 E-value=0.018 Score=53.08 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=29.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHc-------CcceeehHHHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAA 70 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~-------~~~~i~~~~l~~~~ 70 (246)
.++|.|++|+|||.+++.++..+ .+.+++..+++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 48999999999999999998864 34678887776553
No 352
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.00082 Score=54.53 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=25.8
Q ss_pred hcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 26 ~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+....++-++.|.||+||||||+.+.+|--.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345677799999999999999999998744
No 353
>PRK14974 cell division protein FtsY; Provisional
Probab=96.95 E-value=0.00082 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+|.+|+|+|++|+||||.+..|+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999888888765
No 354
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00067 Score=59.30 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+-..+.=-+|.||||+||||+..++|..+++.+.+.
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred CcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 445555678999999999999999999998866544
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.94 E-value=0.00093 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|+|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999998877
No 356
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.94 E-value=0.013 Score=44.38 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC--cceeehHHHHHHHHHccCchHHH--HHH-HHHcCCC----cCH---HH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIK--AKE-AMDKGEL----VSD---DL 95 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~~~l~~~~~~~~~~~g~~--~~~-~~~~~~~----~~~---~~ 95 (246)
.-.+..+|+|-|.+-+|||+++..+++-+. +-++-+|.++...++..-..+.. ... ....+.. .+. +.
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 446667899999999999999999999884 45566654444332211111110 000 0001100 000 11
Q ss_pred HHHHHHHHHc-CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 96 VVGIIDEAMK-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 96 ~~~~l~~~l~-~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
.+.-....+. ..+.+.-+|.|.+..+..........+. |..+ .+|-+.||.|++.+|-..|
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~--g~~v-~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLE--GCRV-WMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHh--CCce-EEEEeeccHHHHHHHHhhc
Confidence 1111111121 1234456788887776554444444443 2333 8899999999999997664
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.94 E-value=0.00094 Score=56.96 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|.||+||||||.+..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357799999999999999999999877
No 358
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00088 Score=60.76 Aligned_cols=40 Identities=28% Similarity=0.515 Sum_probs=31.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRA 69 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~~ 69 (246)
.++..++|.||||+|||.+++.++...+..++++ .+++-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 5666899999999999999999999887766654 344443
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.93 E-value=0.002 Score=52.14 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc------CcceeehHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY------CLCHLATGD 65 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~------~~~~i~~~~ 65 (246)
-.++..++|.|+||+|||++|.+++-.. ++.+++.++
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 3566799999999999999998766432 355666643
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.93 E-value=0.00067 Score=52.98 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=23.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHc-----CcceeehH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~ 64 (246)
.++|.|+||+|||+++..++... .+.+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 37899999999999998876643 34566664
No 361
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.92 E-value=0.00068 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.709 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
=|++.|+||+||||+|+.||+-|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 58999999999999999999977
No 362
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.00087 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998887764
No 363
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.91 E-value=0.0014 Score=55.62 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.+.....++.+|.|.|++||||||++..|+..+
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444444345677899999999999999999988865
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0019 Score=56.35 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=37.0
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+|.++.+. -++.......+.+. .++.++.++|.||||+||||+++.+++.++.
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~-~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIE-NNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444444 34444455555554 3456678999999999999999999998865
No 365
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.90 E-value=0.0019 Score=55.24 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 15 VDLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
++.+....++... ...++++++|.||.|+||||+++.|.+-+.
T Consensus 67 ~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 67 EETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred HHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3444555556553 346677999999999999999999988763
No 366
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.90 E-value=0.001 Score=49.64 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=23.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
++++|+|.||+||||+...|+.+ |+..+
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~-Gfatv 37 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA-GFATV 37 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc-Cceee
Confidence 58999999999999999999885 65433
No 367
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.90 E-value=0.0012 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|+|++||||||+.+.+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 44678999999999999999999763
No 368
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0019 Score=58.97 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=34.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLR 68 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~ 68 (246)
+.+-|+=+.+.||||+|||.+++.+|-+-++++++. ++.++
T Consensus 179 GakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 179 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 458888999999999999999999999999876654 45544
No 369
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.89 E-value=0.0017 Score=61.28 Aligned_cols=36 Identities=33% Similarity=0.429 Sum_probs=28.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
..+.+.++|.||||+||||+++.++..++..++.++
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 334457899999999999999999998876655543
No 370
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.88 E-value=0.00093 Score=57.38 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
-.++-++.|.||+||||||+.+.||--
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456679999999999999999999863
No 371
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.003 Score=59.37 Aligned_cols=58 Identities=10% Similarity=0.276 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhc------CCCCCe-EEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHH
Q 025937 15 VDLMTELLRRMKC------ASKPDK-RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVA 72 (246)
Q Consensus 15 ~~~~~~~~~~~~~------~~~~~~-~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~ 72 (246)
.++...+.+.+.. .+.+|. .++|.||.|+|||-+|+.||+.+. +.-|++++.+.++.-
T Consensus 497 d~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 497 DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 3444445555552 345554 778899999999999999999984 577899998887654
No 372
>PRK04328 hypothetical protein; Provisional
Probab=96.87 E-value=0.0028 Score=52.20 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~ 63 (246)
-.++..++|.|+||+|||++|..++... | ..+++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3567799999999999999998876542 2 455655
No 373
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.87 E-value=0.00079 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=20.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...++|.|+||+|||++++++...+.
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999998763
No 374
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.86 E-value=0.0016 Score=41.36 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+|.|+.||||||+...+.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999998775543
No 375
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.86 E-value=0.0011 Score=62.96 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
-.++.-|+|.||||+||||+++.++..++..++.
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 3566789999999999999999999999876554
No 376
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0019 Score=59.97 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=36.0
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
++..+.+. -+.++.....+.+. ..+..+-++|.||+|+||||+++.+|+.+++.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~-~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALI-SNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHH-cCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 33334433 23344444444443 33445678999999999999999999999774
No 377
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0018 Score=59.92 Aligned_cols=54 Identities=13% Similarity=0.303 Sum_probs=36.2
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.++.+. -++++.....+.+. ..+.+..++|.||+|+||||+++.|++.+++.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~-~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIA-EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHH-hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444443 33444444444443 34556678999999999999999999998754
No 378
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.002 Score=58.10 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=36.7
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
+|.+..+. -+..+.....+.+. ..+.+..++|.||+|+||||+++.+|+.+++
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~-~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVK-LQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34443333 44455555555554 3355567889999999999999999999875
No 379
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.84 E-value=0.002 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=19.7
Q ss_pred CC-cCEEEEEecCHHHHHHHHhcCcC
Q 025937 137 KK-VDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 137 ~~-~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
.. ||++|+|++|++++.+|+.+|+.
T Consensus 65 ~~~pdl~IYL~~~~e~~~~RI~kRgR 90 (146)
T PF01712_consen 65 PKSPDLIIYLDASPETCLERIKKRGR 90 (146)
T ss_dssp CHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred hccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 45 99999999999999999999853
No 380
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.83 E-value=0.00092 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 381
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.82 E-value=0.0032 Score=51.22 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=28.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGD 65 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~ 65 (246)
+-.++..++|.|+||||||+++..++... | +.+++.++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 34566799999999999999999986542 2 45566543
No 382
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.82 E-value=0.0013 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+++|+|++|||||++|..++...+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999998765
No 383
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.82 E-value=0.0024 Score=51.08 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..+.++.|.|.|++||||||+...+...++
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467788999999999999999999988754
No 384
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.82 E-value=0.0013 Score=66.78 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 68 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~ 68 (246)
+.++|+=|+|.||||+|||.+|+.||...+++++ +..+++.
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 3566778999999999999999999999998766 5556664
No 385
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.82 E-value=0.0014 Score=49.47 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
...=++|.|++|+||||++..|.++ |+.+++-|
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 3467899999999999999998885 77766554
No 386
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0012 Score=51.39 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=27.6
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++-++..-.++-+++|+||+|+||||+.+.|....
T Consensus 18 L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 33333345677799999999999999999997765
No 387
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.81 E-value=0.0013 Score=60.66 Aligned_cols=34 Identities=35% Similarity=0.579 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
++.++.+|.||||.||||+|+.+|+.-|+.++.+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 4456788899999999999999999999877754
No 388
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.81 E-value=0.0025 Score=55.07 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=33.4
Q ss_pred CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 13 PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
-++.......+... ..+.+..++|.||||+||||+++.+++.+...
T Consensus 18 g~~~~~~~l~~~~~-~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 18 GQEHIVQTLKNAIK-NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444444444443 34556688999999999999999999998643
No 389
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.79 E-value=0.002 Score=54.90 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=26.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
....++-|++.||||+|||.+|--+|+.+|
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445567899999999999999999999997
No 390
>PRK09183 transposase/IS protein; Provisional
Probab=96.79 E-value=0.0021 Score=53.27 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=28.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLR 68 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~ 68 (246)
..+..++|.||+|+|||+++..++... | +.+++..+++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 445688999999999999999996553 3 34556655553
No 391
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.78 E-value=0.0024 Score=53.41 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.++.++.........+|+|.|++|+||||+|..++..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 34444555433477889999999999999999999977
No 392
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.78 E-value=0.0013 Score=56.46 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...++|.|+||+|||++++.+|+.++.+++.+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 34789999999999999999999998765543
No 393
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.001 Score=53.79 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.++..-.++-.+.|.|++||||||+++.|+--.
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 444455455677799999999999999999998643
No 394
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0024 Score=58.02 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=37.3
Q ss_pred ccccccCCCC-chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 4 SSAANLEDVP-SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
++|.++.+.- ++.+.....+.+. ..+-+..++|.|++|+||||+++.|++.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~-~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD-NNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH-cCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 4555555553 3334344444443 4556677899999999999999999999854
No 395
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.77 E-value=0.0013 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+|+|.|++||||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998653
No 396
>PRK06921 hypothetical protein; Provisional
Probab=96.77 E-value=0.034 Score=46.27 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc----Cc--ceeehHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY----CL--CHLATGDMLRA 69 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~----~~--~~i~~~~l~~~ 69 (246)
....++|.|++|+|||.++..++..+ |. .+++..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 45689999999999999999998865 33 45666555543
No 397
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0012 Score=52.34 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=24.8
Q ss_pred cCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 27 ~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..-....+..|+||+||||||+.+.|-...
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 344666799999999999999999996654
No 398
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.75 E-value=0.0011 Score=53.31 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
--+.++|.||||+||||-...||.++
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 34589999999999999999999987
No 399
>PHA03135 thymidine kinase; Provisional
Probab=96.74 E-value=0.098 Score=44.72 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.-.+|.|.|+.|+||||+++.+++.
T Consensus 9 ~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 9 QLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHh
Confidence 3458899999999999999999985
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.74 E-value=0.00095 Score=49.40 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 455689999999999999999998766
No 401
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.74 E-value=0.0034 Score=53.97 Aligned_cols=36 Identities=22% Similarity=0.549 Sum_probs=27.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcC--cce--eehHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYC--LCH--LATGDM 66 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~--i~~~~l 66 (246)
.+..|+|.||||+|||.++..+|+.+| .|+ ++.+++
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 457899999999999999999999997 444 444444
No 402
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.73 E-value=0.0015 Score=52.32 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566799999999999999999998765
No 403
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0024 Score=58.95 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+.+.....+.+. ..+-++.++|.||+|+||||+++.|++.+++.
T Consensus 22 e~v~~~L~~ai~-~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 22 ETVKAILSRAAQ-ENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HHHHHHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 333444444443 33446789999999999999999999999764
No 404
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.72 E-value=0.0016 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.+|+|.||.||||||.+..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999988765
No 405
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.72 E-value=0.0014 Score=47.16 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEECCCCCChhHHHHHHHh
Q 025937 34 RLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~ 54 (246)
.|+|.|.+|+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 406
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.71 E-value=0.0017 Score=50.73 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=23.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc----Ccceeeh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY----CLCHLAT 63 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~----~~~~i~~ 63 (246)
..|-|.||||||||++...+.+.+ .+.+|..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 789999999999999876655554 5555544
No 407
>PF13479 AAA_24: AAA domain
Probab=96.71 E-value=0.0014 Score=52.68 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+.+..++|.|+||+||||++..+ =+..+|+.
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence 35679999999999999999888 23445555
No 408
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.71 E-value=0.0047 Score=50.05 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=26.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc-----Ccceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~ 63 (246)
.-.++..++|.|+||+||||++..++... +..+++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34567799999999999999998766432 2455655
No 409
>PRK13768 GTPase; Provisional
Probab=96.71 E-value=0.0016 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++.+++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999999888776
No 410
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.70 E-value=0.0014 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+|.|.|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 411
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.081 Score=43.14 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=69.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (246)
....+.+|+|.|-.++||.-..+++.+.++-....+-.+ .+.+. + +.--..+...+..+
T Consensus 70 ~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval-----~aPt~--~--------------E~~qwY~qRy~~~l 128 (270)
T COG2326 70 ETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL-----PAPTD--R--------------ERGQWYFQRYVAHL 128 (270)
T ss_pred hcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec-----CCCCh--H--------------hhccHHHHHHHHhC
Confidence 577888999999999999999999999996433322111 11110 0 00011122222222
Q ss_pred C-CCcceEec-------------CCCCC------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCC
Q 025937 108 S-CQKGFILD-------------GFPRT------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (246)
Q Consensus 108 ~-~~~g~iid-------------~~~~~------~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~ 163 (246)
+ .+..+|+| ||... ..+...|+++|.+.|+.. +-+||++++++..+|+..|..+|
T Consensus 129 Pa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l-~Kfwl~Is~eeQ~~RF~~R~~dP 203 (270)
T COG2326 129 PAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIIL-VKFWLSISREEQLERFLERRNDP 203 (270)
T ss_pred CCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEE-EEEEEeCCHHHHHHHHHHHhcCH
Confidence 2 12233333 22222 234455667777778777 88999999999999999997654
No 412
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.70 E-value=0.0016 Score=56.78 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.++..|+|+|.+||||||++..|..++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998875
No 413
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.69 E-value=0.0017 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998754
No 414
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.69 E-value=0.0017 Score=52.23 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3566799999999999999999998765
No 415
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.018 Score=49.07 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.1
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
++...+...+.+. ..+.+..++|.||+|+||+|+++.+++.+.+
T Consensus 9 ~~~~~~~l~~~~~-~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 9 HENIKNRIKNSII-KNRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred cHHHHHHHHHHHH-cCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4555666666554 4556678899999999999999999998744
No 416
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.69 E-value=0.013 Score=47.85 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc----C--cceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~----~--~~~i~~ 63 (246)
+-.++.+++|.|+||+|||+++..++-.. | +.+++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 34566799999999999999988876654 3 455664
No 417
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0031 Score=58.21 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=37.7
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -++++.+...+.+. ..+.+..++|.||+|+||||+++.|++.+++.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~-~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAID-TGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 34334333 34445555555554 34566778999999999999999999998764
No 418
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.0032 Score=57.91 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=38.1
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|....++ -++++.+...+.+. ..+.+..++|.||+|+||||+++.+++.+++.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~-~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIK-QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44444444 33444555555554 34556778899999999999999999998765
No 419
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.68 E-value=0.0017 Score=52.16 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998765
No 420
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0029 Score=58.66 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=33.7
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
++.+.....+.+. .++-+.-++|.||+|+||||+|+.||+.+++.
T Consensus 21 Qe~i~~~L~~~i~-~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLR-MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHH-cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3444444444443 34556679999999999999999999999875
No 421
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.68 E-value=0.0032 Score=59.86 Aligned_cols=34 Identities=15% Similarity=0.424 Sum_probs=27.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcc--eeehHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDML 67 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~--~i~~~~l~ 67 (246)
.++|.||+|+|||++|+.||+.++.. .++++++.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 58899999999999999999999764 45555543
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=96.68 E-value=0.0019 Score=57.35 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=26.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc----Cc--ceeehH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY----CL--CHLATG 64 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~----~~--~~i~~~ 64 (246)
.+|.+|++.|++||||||.+..||..+ |. ..++.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 457899999999999999877777654 33 456663
No 423
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.0025 Score=59.73 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
..+.+...+.+. ..+.+..++|.||+|+||||+|+.+|+.+.+.
T Consensus 24 e~~v~~L~~aI~-~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 24 DHIVQTLKNIIK-SNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHHHHHHHHHH-cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 334444444443 34556778999999999999999999998775
No 424
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.67 E-value=0.0021 Score=51.27 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=29.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~ 64 (246)
+-.++..+.|.|+||||||++|..++... | +.+++..
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34567899999999999999999988654 3 5666664
No 425
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.67 E-value=0.0016 Score=56.03 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.8
Q ss_pred cCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 27 ~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...+.+..|+|.|++||||||+.+.|...+.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3456778999999999999999999988764
No 426
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.67 E-value=0.0018 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567799999999999999999998765
No 427
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.67 E-value=0.0018 Score=57.51 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+|.+|+|+|++||||||.+..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 457799999999999999999999877
No 428
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.67 E-value=0.002 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.|.|++||||||++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 429
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.66 E-value=0.0016 Score=57.73 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+..|+|.||||+|||++++.|+..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 356889999999999999999999874
No 430
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.66 E-value=0.002 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+|.+|+|.|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999776
No 431
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0053 Score=50.09 Aligned_cols=48 Identities=17% Similarity=0.432 Sum_probs=36.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHHHHHHccC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKT 75 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~~~~~~~~ 75 (246)
+--+|.=+++.||||+|||-+++.+|......+| .-++++++.+..+.
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 3456667899999999999999999998865554 44567777665444
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.65 E-value=0.0024 Score=57.73 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHHHHHccCchHHHHHHHHHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~ 88 (246)
.-.++..++|.|+||+||||++..++... | +.+++.++-..+.......+|-.+..++..|
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g 324 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQG 324 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCC
Confidence 34666799999999999999999988865 3 4666654433333332223343344444444
No 433
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.64 E-value=0.0019 Score=51.59 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567799999999999999999998754
No 434
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.64 E-value=0.0019 Score=51.78 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.|+.||||||+.+.|+..+
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34667799999999999999999998764
No 435
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.64 E-value=0.0022 Score=53.70 Aligned_cols=29 Identities=34% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+....+.|+|+|||||||+...+...+
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35778899999999999999998888775
No 436
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.63 E-value=0.002 Score=51.57 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998754
No 437
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.002 Score=51.49 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566799999999999999999998754
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.62 E-value=0.0019 Score=53.05 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc----Ccceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY----CLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~----~~~~i~~ 63 (246)
-..+.+++|.||.||||||+.+.|+.-+ |-..++-
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 3567899999999999999999999866 3355544
No 439
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.61 E-value=0.002 Score=50.20 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 556799999999999999999998754
No 440
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.002 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+++++|++|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999988877
No 441
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.61 E-value=0.0019 Score=52.63 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3566799999999999999999998654
No 442
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.61 E-value=0.0021 Score=51.75 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++-++.|.|++||||||+.+.|+..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566799999999999999999998754
No 443
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.61 E-value=0.002 Score=51.84 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998654
No 444
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.60 E-value=0.0021 Score=51.74 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998765
No 445
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0021 Score=52.32 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998765
No 446
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.0022 Score=55.79 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|+||+|+||||++..|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 446699999999999999999998764
No 447
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.59 E-value=0.0026 Score=51.17 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=28.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~ 64 (246)
-.++.++.|.|+|||||||+|..++... .+.+++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3567789999999999999999998764 24466553
No 448
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.58 E-value=0.0024 Score=52.02 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-..+.+++|.|++||||||++..|-..+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3556799999999999999888887655
No 449
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.58 E-value=0.0023 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
-.++.+++|.||.||||||+.+.+.-
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35667999999999999999998853
No 450
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.58 E-value=0.0022 Score=51.09 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566799999999999999999998754
No 451
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0023 Score=51.27 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998754
No 452
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.57 E-value=0.0022 Score=51.02 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 566799999999999999999998765
No 453
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.57 E-value=0.0024 Score=56.57 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+|.+|++.|++||||||.+..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 446799999999999999988888764
No 454
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.0043 Score=55.60 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=33.2
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+.++.....+.+. ..+.+..++|.||+|+||||+++.+++.+.+.
T Consensus 22 q~~~v~~L~~~i~-~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALR-FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHH-cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4444454455554 34556678999999999999999999998653
No 455
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0021 Score=51.45 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++ ++.|.|++||||||+.+.|+..+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 46 89999999999999999998654
No 456
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.57 E-value=0.0024 Score=49.15 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=24.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567799999999999999999998765
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0022 Score=52.12 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566799999999999999999998754
No 458
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0024 Score=49.49 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998754
No 459
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0022 Score=57.60 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++|.++.++||||+||||+.+.|..++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 444555599999999999999999887
No 460
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.57 E-value=0.0025 Score=49.39 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3566799999999999999999998765
No 461
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.56 E-value=0.0023 Score=51.75 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3566799999999999999999998865
No 462
>COG4240 Predicted kinase [General function prediction only]
Probab=96.56 E-value=0.0034 Score=50.35 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc---C---cceeehHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---C---LCHLATGDMLR 68 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~---~---~~~i~~~~l~~ 68 (246)
..+|.++.|.||-||||||++..|...+ | ...+|.||+..
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 4668899999999999999987766554 3 35678887654
No 463
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.56 E-value=0.0023 Score=52.34 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=24.8
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++-++.|.|+.||||||+.+.|+..+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34566799999999999999999998754
No 464
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.56 E-value=0.0021 Score=51.48 Aligned_cols=28 Identities=39% Similarity=0.538 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3566799999999999999999998764
No 465
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0025 Score=49.62 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566799999999999999999998654
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.55 E-value=0.0024 Score=48.98 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4667799999999999999999998654
No 467
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0024 Score=51.95 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998865
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.55 E-value=0.0025 Score=49.60 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3566799999999999999999998765
No 469
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.0038 Score=57.33 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=37.4
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+|.+..+. -++.+.....+.+. .++.+..++|.||+|+||||+++.|++.+++.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~-~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIE-SNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 34333333 34444455555554 34566679999999999999999999999764
No 470
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.55 E-value=0.0026 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.++|.|++|+||||+...|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999997754
No 471
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0023 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
-.++.++.|.|++||||||+.+.|+-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35667999999999999999999985
No 472
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0024 Score=52.12 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3566799999999999999999998654
No 473
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.54 E-value=0.0025 Score=50.54 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4677799999999999999999998765
No 474
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.54 E-value=0.0025 Score=51.60 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567799999999999999999998754
No 475
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0023 Score=51.54 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566799999999999999999998754
No 476
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.53 E-value=0.0023 Score=51.68 Aligned_cols=29 Identities=38% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.|+.||||||+.+.|+..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567799999999999999999998765
No 477
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.53 E-value=0.0025 Score=51.97 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3567799999999999999999998754
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.53 E-value=0.0027 Score=49.55 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|++||||||+.+.|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998754
No 479
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.52 E-value=0.0026 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 556799999999999999999998865
No 480
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.52 E-value=0.0025 Score=51.69 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998754
No 481
>PRK05642 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.011 Score=48.22 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=28.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc-----CcceeehHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~~l~~ 68 (246)
..++|.|++|+|||.+++.++..+ .+.+++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 568999999999999999987543 457788877654
No 482
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0028 Score=49.01 Aligned_cols=29 Identities=38% Similarity=0.699 Sum_probs=25.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34567799999999999999999998865
No 483
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0026 Score=52.00 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566799999999999999999998765
No 484
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0026 Score=51.19 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 566799999999999999999998754
No 485
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.51 E-value=0.0032 Score=53.91 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=24.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+-+-++|.||||+||||+++.|+.--
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 4455688999999999999999998865
No 486
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.51 E-value=0.019 Score=49.51 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=67.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
+.+...+++.|+.|||||++...|.+. +...+|+..+.+.. ++.+|.... ++. +-......+...+....
T Consensus 138 ~~~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~~-----~qp-sQ~~Fe~~l~~~l~~~~ 207 (345)
T PRK11784 138 PAQFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLGG-----PQP-SQKDFENLLAEALLKLD 207 (345)
T ss_pred cccCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCCC-----CCc-chHHHHHHHHHHHHcCC
Confidence 355567889999999999999999775 77789887665431 222222110 111 11223344445555544
Q ss_pred CCcceEecCCCCCH---HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 109 CQKGFILDGFPRTE---VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 109 ~~~g~iid~~~~~~---~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
....+++++-.+.+ .-...|.+.+++ .-+|++++|.+...+|+....
T Consensus 208 ~~~~i~vE~Es~~IG~~~lP~~l~~~m~~-----~~~v~i~~~~e~Rv~~l~~~Y 257 (345)
T PRK11784 208 PARPIVVEDESRRIGRVHLPEALYEAMQQ-----APIVVVEAPLEERVERLLEDY 257 (345)
T ss_pred CCCeEEEEeccccccCccCCHHHHHHHhh-----CCEEEEECCHHHHHHHHHHHh
Confidence 44556665432221 111222222222 246899999999999987643
No 487
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.50 E-value=0.0025 Score=52.51 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.+++|.|++||||||+.+.|+..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567799999999999999999998865
No 488
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.50 E-value=0.0026 Score=52.03 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998765
No 489
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.50 E-value=0.0047 Score=53.62 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+..++|.||||+|||++++.+.+.+
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4556689999999999999999998764
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.50 E-value=0.0027 Score=49.64 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|+.||||||+.+.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998765
No 491
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.49 E-value=0.0026 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEECCCCCChhHHHHHHHh
Q 025937 34 RLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~ 54 (246)
.|+|.|++||||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999865
No 492
>PHA03138 thymidine kinase; Provisional
Probab=96.49 E-value=0.031 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.+|.|.|+.|+||||.++.+.+.+
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhh
Confidence 3588999999999999998776644
No 493
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.49 E-value=0.0028 Score=52.75 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=29.2
Q ss_pred HHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 20 ~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.........+....|+|.|++||||||+...|.+.+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 3444444444567799999999999999999999887
No 494
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.48 E-value=0.0027 Score=51.31 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999999765
No 495
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.48 E-value=0.0027 Score=50.96 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+.++.|.|+.||||||+.+.|+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456799999999999999999998654
No 496
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.47 E-value=0.066 Score=48.02 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=29.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHc-------CcceeehHHHHHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAA 70 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~-------~~~~i~~~~l~~~~ 70 (246)
.++|.|++|+|||++++.++..+ .+.+++..+++...
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA 186 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 58899999999999999998743 34677887766553
No 497
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.47 E-value=0.0028 Score=51.84 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
-.++-++.|.|+.||||||+.+.|+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356679999999999999999999875
No 498
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.47 E-value=0.0065 Score=53.36 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhc--CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMKC--ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.+....+.. ....+..++|.|+||+|||++++.+++.+
T Consensus 37 ~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 37 EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444432 24455678999999999999999999876
No 499
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.47 E-value=0.0029 Score=50.43 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 566799999999999999999998754
No 500
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0029 Score=52.33 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999998754
Done!