Query 025937
Match_columns 246
No_of_seqs 131 out of 1506
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 21:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 5.4E-44 1.8E-48 284.5 25.2 204 33-246 1-204 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 1.4E-44 4.9E-49 290.0 21.7 212 30-245 6-228 (230)
3 3tlx_A Adenylate kinase 2; str 100.0 3.3E-42 1.1E-46 281.7 26.5 238 8-245 5-242 (243)
4 3dl0_A Adenylate kinase; phosp 100.0 5.8E-39 2E-43 257.8 24.8 213 33-245 1-213 (216)
5 3fb4_A Adenylate kinase; psych 100.0 2.1E-38 7.2E-43 254.4 25.3 213 33-245 1-213 (216)
6 3be4_A Adenylate kinase; malar 100.0 7.5E-38 2.6E-42 251.7 24.7 216 29-244 2-217 (217)
7 3umf_A Adenylate kinase; rossm 100.0 2.2E-37 7.6E-42 247.5 22.0 187 29-246 26-213 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 6.6E-36 2.2E-40 242.8 27.3 217 29-245 13-229 (233)
9 1aky_A Adenylate kinase; ATP:A 100.0 1E-35 3.4E-40 239.6 26.6 217 30-246 2-219 (220)
10 1e4v_A Adenylate kinase; trans 100.0 1.3E-35 4.4E-40 238.0 22.9 209 33-245 1-214 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 1.2E-35 4E-40 239.8 21.0 212 33-245 1-223 (223)
12 1zd8_A GTP:AMP phosphotransfer 100.0 5.6E-33 1.9E-37 224.6 24.0 209 30-245 5-213 (227)
13 1zak_A Adenylate kinase; ATP:A 100.0 2.8E-31 9.5E-36 213.9 19.9 206 30-245 3-209 (222)
14 2cdn_A Adenylate kinase; phosp 100.0 3.3E-27 1.1E-31 187.2 23.3 186 28-246 16-201 (201)
15 3cm0_A Adenylate kinase; ATP-b 99.9 7.6E-26 2.6E-30 176.9 22.0 183 31-245 3-185 (186)
16 1qf9_A UMP/CMP kinase, protein 99.9 5.4E-25 1.9E-29 172.7 24.1 187 30-245 4-190 (194)
17 2c95_A Adenylate kinase 1; tra 99.9 4E-25 1.4E-29 174.0 21.7 185 30-245 7-192 (196)
18 1tev_A UMP-CMP kinase; ploop, 99.9 1.9E-24 6.6E-29 169.8 22.9 187 31-245 2-193 (196)
19 2bbw_A Adenylate kinase 4, AK4 99.9 4.3E-24 1.5E-28 174.5 24.4 209 30-245 25-233 (246)
20 1ukz_A Uridylate kinase; trans 99.9 1.7E-24 5.7E-29 171.7 21.0 186 29-245 12-200 (203)
21 2bwj_A Adenylate kinase 5; pho 99.9 1.5E-24 5E-29 171.1 20.4 184 31-245 11-195 (199)
22 3lw7_A Adenylate kinase relate 99.8 3.3E-18 1.1E-22 131.5 21.6 169 33-245 2-175 (179)
23 4eaq_A DTMP kinase, thymidylat 99.7 1.8E-16 6.1E-21 127.9 16.9 178 29-245 23-223 (229)
24 1ly1_A Polynucleotide kinase; 99.7 3.3E-16 1.1E-20 121.0 17.3 163 32-244 2-170 (181)
25 3vaa_A Shikimate kinase, SK; s 99.7 1.1E-16 3.8E-21 126.3 14.6 167 29-245 22-194 (199)
26 2pbr_A DTMP kinase, thymidylat 99.7 5E-16 1.7E-20 121.5 17.5 163 33-245 1-190 (195)
27 3t61_A Gluconokinase; PSI-biol 99.7 2.4E-16 8.3E-21 124.5 15.6 160 30-245 16-178 (202)
28 4hlc_A DTMP kinase, thymidylat 99.7 7.8E-16 2.7E-20 121.9 16.9 171 32-245 2-199 (205)
29 2z0h_A DTMP kinase, thymidylat 99.7 2.9E-15 9.8E-20 117.4 18.3 166 33-245 1-190 (197)
30 2wwf_A Thymidilate kinase, put 99.7 1.6E-17 5.5E-22 131.9 4.4 176 29-245 7-198 (212)
31 3trf_A Shikimate kinase, SK; a 99.7 2E-15 6.8E-20 117.4 15.0 110 31-157 4-116 (185)
32 1kht_A Adenylate kinase; phosp 99.7 4.1E-16 1.4E-20 121.6 11.0 175 32-245 3-192 (192)
33 3v9p_A DTMP kinase, thymidylat 99.7 6.1E-16 2.1E-20 124.2 11.9 175 30-245 23-225 (227)
34 4edh_A DTMP kinase, thymidylat 99.7 5.3E-15 1.8E-19 117.8 16.4 171 31-245 5-205 (213)
35 3lv8_A DTMP kinase, thymidylat 99.7 2.3E-15 7.8E-20 121.6 14.3 176 30-245 25-227 (236)
36 1nks_A Adenylate kinase; therm 99.6 4.6E-15 1.6E-19 115.8 15.4 167 33-244 2-193 (194)
37 4tmk_A Protein (thymidylate ki 99.6 2.6E-14 8.8E-19 113.7 19.2 172 32-245 3-205 (213)
38 1e6c_A Shikimate kinase; phosp 99.6 8.8E-15 3E-19 112.4 16.0 161 33-245 3-169 (173)
39 2pt5_A Shikimate kinase, SK; a 99.6 3.8E-15 1.3E-19 113.9 13.5 158 33-245 1-162 (168)
40 3kb2_A SPBC2 prophage-derived 99.6 6.1E-15 2.1E-19 113.0 14.2 146 33-245 2-165 (173)
41 3hjn_A DTMP kinase, thymidylat 99.6 1.2E-14 3.9E-19 114.5 15.7 165 33-246 1-191 (197)
42 2iyv_A Shikimate kinase, SK; t 99.6 3.2E-15 1.1E-19 116.1 12.2 161 32-245 2-167 (184)
43 2v54_A DTMP kinase, thymidylat 99.6 4.5E-15 1.5E-19 117.0 12.9 167 31-245 3-189 (204)
44 2rhm_A Putative kinase; P-loop 99.6 4.5E-15 1.5E-19 115.9 11.2 125 29-160 2-126 (193)
45 2plr_A DTMP kinase, probable t 99.6 2.6E-14 8.7E-19 113.2 15.3 172 31-245 3-206 (213)
46 1y63_A LMAJ004144AAA protein; 99.6 2.4E-14 8.2E-19 111.4 14.5 113 28-160 6-122 (184)
47 2vli_A Antibiotic resistance p 99.6 4.2E-14 1.4E-18 109.5 15.5 160 30-245 3-170 (183)
48 1zuh_A Shikimate kinase; alpha 99.6 9.4E-15 3.2E-19 111.9 11.4 106 32-159 7-117 (168)
49 3ld9_A DTMP kinase, thymidylat 99.6 6.3E-15 2.1E-19 117.9 10.1 173 28-245 17-214 (223)
50 1ltq_A Polynucleotide kinase; 99.6 7.2E-15 2.5E-19 122.9 10.8 125 32-160 2-127 (301)
51 1jjv_A Dephospho-COA kinase; P 99.6 8.7E-14 3E-18 110.0 16.4 162 33-245 3-195 (206)
52 1vht_A Dephospho-COA kinase; s 99.6 2.8E-14 9.6E-19 113.9 13.5 164 31-245 3-193 (218)
53 1cke_A CK, MSSA, protein (cyti 99.6 3E-14 1E-18 114.2 12.8 115 32-157 5-159 (227)
54 1nn5_A Similar to deoxythymidy 99.6 8.7E-15 3E-19 116.2 8.7 172 30-245 7-199 (215)
55 2f6r_A COA synthase, bifunctio 99.6 3.1E-14 1.1E-18 118.1 12.1 166 30-245 73-267 (281)
56 2jaq_A Deoxyguanosine kinase; 99.6 3.6E-13 1.2E-17 105.9 17.7 167 33-245 1-199 (205)
57 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 2.2E-14 7.5E-19 117.8 11.0 163 31-245 3-172 (260)
58 3tmk_A Thymidylate kinase; pho 99.6 2.7E-14 9.3E-19 113.7 11.1 174 30-245 3-201 (216)
59 4eun_A Thermoresistant glucoki 99.5 4.7E-14 1.6E-18 111.2 12.2 160 29-245 26-192 (200)
60 1knq_A Gluconate kinase; ALFA/ 99.5 8.2E-13 2.8E-17 101.6 18.5 159 30-245 6-172 (175)
61 1via_A Shikimate kinase; struc 99.5 4.2E-14 1.4E-18 109.0 10.8 157 33-245 5-165 (175)
62 2if2_A Dephospho-COA kinase; a 99.5 5.4E-14 1.8E-18 111.0 11.5 162 33-245 2-190 (204)
63 4i1u_A Dephospho-COA kinase; s 99.5 2.5E-13 8.6E-18 107.3 15.1 166 30-245 7-200 (210)
64 1kag_A SKI, shikimate kinase I 99.5 2.6E-13 8.7E-18 104.2 13.6 165 31-245 3-171 (173)
65 3ake_A Cytidylate kinase; CMP 99.5 4.1E-13 1.4E-17 105.9 14.4 164 33-245 3-207 (208)
66 3nwj_A ATSK2; P loop, shikimat 99.5 2.3E-13 7.8E-18 110.8 12.7 111 32-159 48-162 (250)
67 1uf9_A TT1252 protein; P-loop, 99.5 3.4E-13 1.1E-17 106.0 13.3 164 29-245 5-192 (203)
68 3iij_A Coilin-interacting nucl 99.5 7.2E-13 2.5E-17 102.4 14.0 110 30-160 9-118 (180)
69 1uj2_A Uridine-cytidine kinase 99.5 2.3E-14 7.8E-19 117.1 5.3 177 22-245 12-232 (252)
70 2qt1_A Nicotinamide riboside k 99.5 5.1E-14 1.7E-18 111.5 6.2 170 29-245 18-204 (207)
71 2qor_A Guanylate kinase; phosp 99.4 1.1E-11 3.8E-16 97.8 16.3 169 28-245 8-195 (204)
72 1q3t_A Cytidylate kinase; nucl 99.4 2.2E-12 7.6E-17 104.2 12.2 43 28-70 12-54 (236)
73 1gvn_B Zeta; postsegregational 99.4 5.2E-12 1.8E-16 105.0 14.8 124 29-160 30-163 (287)
74 2h92_A Cytidylate kinase; ross 99.4 1E-12 3.5E-17 104.7 10.1 39 32-70 3-41 (219)
75 4e22_A Cytidylate kinase; P-lo 99.4 1.5E-11 5E-16 100.4 16.7 41 30-70 25-65 (252)
76 2yvu_A Probable adenylyl-sulfa 99.4 2.7E-12 9.2E-17 99.8 11.8 115 29-157 10-131 (186)
77 1p5z_B DCK, deoxycytidine kina 99.4 4.2E-13 1.4E-17 110.2 7.3 33 29-61 21-54 (263)
78 3fdi_A Uncharacterized protein 99.4 8.1E-12 2.8E-16 98.5 14.4 170 32-245 6-197 (201)
79 3hdt_A Putative kinase; struct 99.4 1.5E-11 5.1E-16 98.4 15.2 41 31-72 13-53 (223)
80 1m7g_A Adenylylsulfate kinase; 99.4 1.7E-12 5.9E-17 103.0 8.1 115 29-156 22-149 (211)
81 2grj_A Dephospho-COA kinase; T 99.3 9.8E-12 3.3E-16 97.3 11.2 44 30-73 10-53 (192)
82 2p5t_B PEZT; postsegregational 99.3 2.6E-12 8.8E-17 104.9 7.2 124 29-160 29-158 (253)
83 3zvl_A Bifunctional polynucleo 99.3 4.6E-12 1.6E-16 110.7 8.0 105 29-161 255-359 (416)
84 2vp4_A Deoxynucleoside kinase; 99.3 7E-12 2.4E-16 100.9 7.9 80 135-245 143-223 (230)
85 1qhx_A CPT, protein (chloramph 99.3 7.3E-11 2.5E-15 90.7 13.2 120 32-160 3-134 (178)
86 3r20_A Cytidylate kinase; stru 99.3 1.7E-10 5.8E-15 92.7 15.7 41 30-70 7-47 (233)
87 2pez_A Bifunctional 3'-phospho 99.3 2.7E-11 9.1E-16 93.5 10.5 115 30-159 3-125 (179)
88 2ocp_A DGK, deoxyguanosine kin 99.2 1E-09 3.5E-14 88.6 16.1 29 31-59 1-30 (241)
89 2axn_A 6-phosphofructo-2-kinas 99.2 3.4E-11 1.2E-15 107.9 7.7 125 30-160 33-169 (520)
90 3uie_A Adenylyl-sulfate kinase 99.1 1.8E-09 6.1E-14 84.7 14.6 113 29-156 22-140 (200)
91 1x6v_B Bifunctional 3'-phospho 99.1 5.3E-10 1.8E-14 101.5 11.1 116 30-158 50-171 (630)
92 1ex7_A Guanylate kinase; subst 99.0 4.3E-10 1.5E-14 87.3 7.4 164 34-245 3-183 (186)
93 2gks_A Bifunctional SAT/APS ki 99.0 5E-10 1.7E-14 100.8 8.4 128 15-157 355-488 (546)
94 3tau_A Guanylate kinase, GMP k 99.0 1E-09 3.5E-14 86.7 8.2 28 30-57 6-33 (208)
95 1gtv_A TMK, thymidylate kinase 99.0 6.4E-11 2.2E-15 93.7 0.7 26 33-58 1-26 (214)
96 1m8p_A Sulfate adenylyltransfe 99.0 1.9E-09 6.3E-14 97.6 10.0 116 28-157 392-514 (573)
97 3tr0_A Guanylate kinase, GMP k 98.9 7.3E-09 2.5E-13 81.2 11.2 28 30-57 5-32 (205)
98 2j41_A Guanylate kinase; GMP, 98.9 3.8E-09 1.3E-13 82.9 7.6 27 30-56 4-30 (207)
99 2ze6_A Isopentenyl transferase 98.9 2.7E-09 9.1E-14 87.0 6.8 122 33-160 2-139 (253)
100 2bdt_A BH3686; alpha-beta prot 98.8 5.7E-08 1.9E-12 75.2 11.7 118 33-160 3-123 (189)
101 1p6x_A Thymidine kinase; P-loo 98.8 3.5E-08 1.2E-12 83.2 10.5 29 30-58 5-33 (334)
102 3a00_A Guanylate kinase, GMP k 98.8 1.1E-07 3.6E-12 73.7 12.5 25 33-57 2-26 (186)
103 3ch4_B Pmkase, phosphomevalona 98.8 1.1E-07 3.7E-12 74.3 12.3 115 29-156 8-144 (202)
104 1bif_A 6-phosphofructo-2-kinas 98.8 1.2E-07 4.2E-12 83.8 13.6 119 29-159 36-172 (469)
105 3asz_A Uridine kinase; cytidin 98.7 7.3E-08 2.5E-12 75.9 10.2 39 29-67 3-43 (211)
106 3czq_A Putative polyphosphate 98.7 1.9E-07 6.5E-12 77.2 12.5 166 28-244 82-276 (304)
107 3lnc_A Guanylate kinase, GMP k 98.6 4.9E-07 1.7E-11 72.3 11.7 28 29-56 24-52 (231)
108 3cr8_A Sulfate adenylyltranfer 98.6 3E-07 1E-11 82.7 10.8 128 16-157 353-487 (552)
109 1rz3_A Hypothetical protein rb 98.6 7.5E-08 2.5E-12 75.5 5.5 41 16-56 5-46 (201)
110 2jeo_A Uridine-cytidine kinase 98.4 8.1E-06 2.8E-10 65.8 15.1 37 23-59 16-52 (245)
111 1s96_A Guanylate kinase, GMP k 98.4 3E-05 1E-09 61.4 16.7 30 28-57 12-41 (219)
112 1osn_A Thymidine kinase, VZV-T 98.4 3.6E-06 1.2E-10 71.0 11.5 29 30-58 10-39 (341)
113 4gp7_A Metallophosphoesterase; 98.4 1.4E-05 4.9E-10 60.7 14.0 113 30-160 7-122 (171)
114 1of1_A Thymidine kinase; trans 98.4 4.4E-06 1.5E-10 71.2 12.1 28 30-57 47-74 (376)
115 3tqc_A Pantothenate kinase; bi 98.3 4.4E-07 1.5E-11 76.2 5.0 38 29-66 89-133 (321)
116 1e2k_A Thymidine kinase; trans 98.3 1E-05 3.4E-10 68.1 12.6 27 31-57 3-29 (331)
117 3crm_A TRNA delta(2)-isopenten 98.2 5.8E-07 2E-11 75.3 3.6 36 31-66 4-39 (323)
118 3czp_A Putative polyphosphate 98.2 1.8E-05 6E-10 70.2 12.4 30 29-58 40-69 (500)
119 3a8t_A Adenylate isopentenyltr 98.1 1.1E-06 3.8E-11 73.9 3.8 36 31-66 39-74 (339)
120 1a7j_A Phosphoribulokinase; tr 98.1 6.6E-07 2.2E-11 74.2 2.3 39 30-68 3-46 (290)
121 1lvg_A Guanylate kinase, GMP k 98.1 3.9E-05 1.3E-09 59.7 12.0 26 31-56 3-28 (198)
122 1zp6_A Hypothetical protein AT 98.1 2E-06 6.7E-11 66.4 4.3 119 29-160 6-127 (191)
123 3czp_A Putative polyphosphate 98.1 1.8E-05 6.3E-10 70.1 10.3 111 28-163 296-429 (500)
124 3foz_A TRNA delta(2)-isopenten 98.0 3.2E-06 1.1E-10 70.3 4.5 37 29-65 7-43 (316)
125 3d3q_A TRNA delta(2)-isopenten 98.0 3.5E-06 1.2E-10 71.0 4.1 35 32-66 7-41 (340)
126 3rhf_A Putative polyphosphate 98.0 6.6E-05 2.3E-09 61.3 11.2 164 30-244 73-265 (289)
127 3exa_A TRNA delta(2)-isopenten 98.0 3.8E-06 1.3E-10 69.9 3.8 35 32-66 3-37 (322)
128 3c8u_A Fructokinase; YP_612366 98.0 7.6E-06 2.6E-10 64.2 5.1 50 16-65 6-60 (208)
129 1g8f_A Sulfate adenylyltransfe 97.9 5.3E-06 1.8E-10 73.8 4.1 52 14-65 377-435 (511)
130 1dek_A Deoxynucleoside monopho 97.9 9.4E-06 3.2E-10 65.3 5.1 40 33-72 2-41 (241)
131 3t15_A Ribulose bisphosphate c 97.9 7.3E-06 2.5E-10 67.9 4.2 39 28-66 32-72 (293)
132 1kgd_A CASK, peripheral plasma 97.9 1.1E-05 3.7E-10 61.8 4.1 29 29-57 2-30 (180)
133 3eph_A TRNA isopentenyltransfe 97.8 8.2E-06 2.8E-10 70.2 3.5 35 31-65 1-35 (409)
134 4b4t_M 26S protease regulatory 97.8 1.5E-05 5.2E-10 69.4 5.1 36 28-63 211-246 (434)
135 2ga8_A Hypothetical 39.9 kDa p 97.8 7E-06 2.4E-10 69.5 2.7 46 15-60 5-52 (359)
136 4b4t_L 26S protease subunit RP 97.8 1.7E-05 6E-10 69.1 5.1 36 28-63 211-246 (437)
137 4b4t_K 26S protease regulatory 97.8 1.9E-05 6.4E-10 68.8 5.1 36 28-63 202-237 (428)
138 4b4t_J 26S protease regulatory 97.8 1.8E-05 6.1E-10 68.2 4.7 36 28-63 178-213 (405)
139 3ec2_A DNA replication protein 97.8 4.4E-05 1.5E-09 58.2 6.4 54 16-69 21-81 (180)
140 1odf_A YGR205W, hypothetical 3 97.7 4.6E-05 1.6E-09 63.0 6.0 30 28-57 27-56 (290)
141 3hws_A ATP-dependent CLP prote 97.7 4.9E-05 1.7E-09 64.7 6.3 33 31-63 50-82 (363)
142 4b4t_I 26S protease regulatory 97.7 3.7E-05 1.2E-09 66.6 5.0 36 28-63 212-247 (437)
143 4b4t_H 26S protease regulatory 97.7 2.6E-05 8.8E-10 68.2 4.1 36 28-63 239-274 (467)
144 2qz4_A Paraplegin; AAA+, SPG7, 97.7 3.4E-05 1.2E-09 62.3 4.6 34 30-63 37-70 (262)
145 3h4m_A Proteasome-activating n 97.7 5.7E-05 2E-09 61.9 5.9 33 30-62 49-81 (285)
146 3ney_A 55 kDa erythrocyte memb 97.7 3.8E-05 1.3E-09 59.8 4.3 29 29-57 16-44 (197)
147 3n70_A Transport activator; si 97.7 5.3E-05 1.8E-09 55.8 5.0 41 16-56 8-48 (145)
148 1lv7_A FTSH; alpha/beta domain 97.6 4E-05 1.4E-09 62.0 4.6 33 31-63 44-76 (257)
149 3eie_A Vacuolar protein sortin 97.6 7.6E-05 2.6E-09 62.5 6.2 35 29-63 48-82 (322)
150 3b9p_A CG5977-PA, isoform A; A 97.6 4.4E-05 1.5E-09 63.0 4.6 33 30-62 52-84 (297)
151 3cf0_A Transitional endoplasmi 97.6 4.3E-05 1.5E-09 63.5 4.6 41 29-69 46-88 (301)
152 1kjw_A Postsynaptic density pr 97.6 0.00031 1E-08 58.2 9.6 160 29-245 102-280 (295)
153 1g41_A Heat shock protein HSLU 97.6 3.4E-05 1.2E-09 67.4 3.8 34 31-64 49-82 (444)
154 1sq5_A Pantothenate kinase; P- 97.6 4.3E-05 1.5E-09 63.8 4.3 36 30-65 78-120 (308)
155 3pfi_A Holliday junction ATP-d 97.6 8.7E-05 3E-09 62.3 6.1 50 14-63 34-86 (338)
156 1jbk_A CLPB protein; beta barr 97.6 0.00011 3.6E-09 55.9 5.8 41 14-56 27-67 (195)
157 3u61_B DNA polymerase accessor 97.6 0.00012 4.3E-09 61.0 6.6 58 5-63 21-79 (324)
158 2c9o_A RUVB-like 1; hexameric 97.6 0.00011 3.7E-09 64.7 6.5 41 23-63 54-96 (456)
159 1d2n_A N-ethylmaleimide-sensit 97.6 5.6E-05 1.9E-09 61.6 4.2 35 29-63 61-95 (272)
160 2x8a_A Nuclear valosin-contain 97.6 8.3E-05 2.8E-09 61.0 5.2 28 34-61 46-73 (274)
161 3d8b_A Fidgetin-like protein 1 97.5 0.0001 3.4E-09 62.8 5.9 33 30-62 115-147 (357)
162 2qmh_A HPR kinase/phosphorylas 97.5 5.5E-05 1.9E-09 58.8 3.8 34 30-64 32-65 (205)
163 2w58_A DNAI, primosome compone 97.5 0.00028 9.6E-09 54.6 7.8 37 33-69 55-96 (202)
164 1in4_A RUVB, holliday junction 97.5 0.00013 4.5E-09 61.4 6.3 46 15-60 31-79 (334)
165 2p65_A Hypothetical protein PF 97.5 0.00012 4E-09 55.5 5.3 40 15-56 28-67 (187)
166 1xwi_A SKD1 protein; VPS4B, AA 97.5 8.3E-05 2.8E-09 62.4 4.6 32 30-61 43-75 (322)
167 1l8q_A Chromosomal replication 97.5 0.00032 1.1E-08 58.6 8.2 38 31-68 36-78 (324)
168 3syl_A Protein CBBX; photosynt 97.5 9.9E-05 3.4E-09 61.1 5.0 28 29-56 64-91 (309)
169 1svm_A Large T antigen; AAA+ f 97.5 0.00016 5.6E-09 61.9 6.4 40 23-62 160-199 (377)
170 1ye8_A Protein THEP1, hypothet 97.5 6E-05 2E-09 57.7 3.3 27 33-59 1-27 (178)
171 1um8_A ATP-dependent CLP prote 97.5 7E-05 2.4E-09 64.1 4.1 34 30-63 70-103 (376)
172 1ofh_A ATP-dependent HSL prote 97.5 8.5E-05 2.9E-09 61.3 4.2 33 30-62 48-80 (310)
173 2qp9_X Vacuolar protein sortin 97.4 9.5E-05 3.2E-09 62.9 4.4 34 30-63 82-115 (355)
174 1z6g_A Guanylate kinase; struc 97.4 8.7E-05 3E-09 58.6 3.6 35 22-56 13-47 (218)
175 3cf2_A TER ATPase, transitiona 97.4 0.0002 6.9E-09 66.9 6.2 40 29-68 508-549 (806)
176 3co5_A Putative two-component 97.4 3.6E-05 1.2E-09 56.6 1.0 43 15-57 10-52 (143)
177 3vfd_A Spastin; ATPase, microt 97.4 0.00025 8.4E-09 61.0 6.1 34 30-63 146-179 (389)
178 2r62_A Cell division protease 97.4 5.3E-05 1.8E-09 61.5 1.7 34 30-63 42-75 (268)
179 3bos_A Putative DNA replicatio 97.4 0.00027 9.3E-09 55.8 5.8 27 31-57 51-77 (242)
180 1tue_A Replication protein E1; 97.4 0.00025 8.7E-09 55.3 5.4 30 32-61 58-87 (212)
181 2kjq_A DNAA-related protein; s 97.3 0.00014 4.9E-09 53.9 3.8 26 31-56 35-60 (149)
182 3cf2_A TER ATPase, transitiona 97.3 0.00013 4.5E-09 68.2 4.1 36 28-63 234-269 (806)
183 1njg_A DNA polymerase III subu 97.3 0.0003 1E-08 55.3 5.6 44 14-58 28-71 (250)
184 3uk6_A RUVB-like 2; hexameric 97.3 0.00027 9.3E-09 59.9 5.5 30 29-58 67-96 (368)
185 2chg_A Replication factor C sm 97.3 0.00038 1.3E-08 54.0 5.9 41 14-56 22-62 (226)
186 1ixz_A ATP-dependent metallopr 97.3 0.00023 7.7E-09 57.3 4.7 29 33-61 50-78 (254)
187 2ce7_A Cell division protein F 97.3 0.0002 6.8E-09 63.2 4.5 34 30-63 47-80 (476)
188 3pvs_A Replication-associated 97.3 0.00042 1.4E-08 60.8 6.5 31 33-63 51-81 (447)
189 1sxj_A Activator 1 95 kDa subu 97.2 0.00023 8E-09 63.5 4.8 33 31-63 76-108 (516)
190 3aez_A Pantothenate kinase; tr 97.2 0.00022 7.5E-09 59.6 4.3 28 29-56 87-114 (312)
191 1xjc_A MOBB protein homolog; s 97.2 0.0002 6.8E-09 54.3 3.6 26 31-56 3-28 (169)
192 1znw_A Guanylate kinase, GMP k 97.2 0.00021 7.2E-09 55.8 3.9 29 29-57 17-45 (207)
193 2zan_A Vacuolar protein sortin 97.2 0.00024 8.1E-09 62.3 4.6 40 30-69 165-207 (444)
194 3hu3_A Transitional endoplasmi 97.2 0.00041 1.4E-08 61.5 5.9 35 29-63 235-269 (489)
195 1sxj_E Activator 1 40 kDa subu 97.2 0.00029 9.8E-09 59.4 4.7 51 5-56 9-60 (354)
196 2z4s_A Chromosomal replication 97.2 0.001 3.5E-08 58.2 8.2 36 32-67 130-172 (440)
197 2v1u_A Cell division control p 97.2 0.00031 1.1E-08 59.6 4.8 43 14-56 24-68 (387)
198 1sxj_C Activator 1 40 kDa subu 97.2 0.00048 1.6E-08 58.0 5.8 41 14-56 30-70 (340)
199 1htw_A HI0065; nucleotide-bind 97.2 0.00054 1.9E-08 51.3 5.5 29 28-56 29-57 (158)
200 1sxj_D Activator 1 41 kDa subu 97.2 0.00049 1.7E-08 57.8 5.7 42 14-57 42-83 (353)
201 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00035 1.2E-08 58.1 4.7 47 15-61 18-67 (324)
202 2qgz_A Helicase loader, putati 97.1 0.00077 2.6E-08 56.1 6.6 50 20-69 139-195 (308)
203 1iy2_A ATP-dependent metallopr 97.1 0.0004 1.4E-08 56.8 4.7 28 34-61 75-102 (278)
204 2bjv_A PSP operon transcriptio 97.1 0.00044 1.5E-08 56.0 4.8 41 17-57 14-54 (265)
205 2qby_B CDC6 homolog 3, cell di 97.1 0.00064 2.2E-08 57.8 6.0 43 14-56 25-69 (384)
206 3te6_A Regulatory protein SIR3 97.1 0.00035 1.2E-08 58.4 4.0 28 29-56 42-69 (318)
207 1jr3_A DNA polymerase III subu 97.1 0.00077 2.6E-08 57.1 6.3 44 14-58 21-64 (373)
208 2qby_A CDC6 homolog 1, cell di 97.1 0.00046 1.6E-08 58.5 4.8 41 16-56 27-69 (386)
209 1np6_A Molybdopterin-guanine d 97.1 0.0004 1.4E-08 52.9 3.8 26 31-56 5-30 (174)
210 1iqp_A RFCS; clamp loader, ext 97.1 0.00082 2.8E-08 55.7 6.1 42 14-57 30-71 (327)
211 3pxg_A Negative regulator of g 97.1 0.00074 2.5E-08 59.5 6.0 40 15-56 186-225 (468)
212 3m6a_A ATP-dependent protease 97.0 0.00043 1.5E-08 62.2 4.2 32 31-62 107-138 (543)
213 4fcw_A Chaperone protein CLPB; 97.0 0.00044 1.5E-08 57.2 4.0 25 32-56 47-71 (311)
214 2v9p_A Replication protein E1; 97.0 0.00068 2.3E-08 56.3 5.1 36 21-56 115-150 (305)
215 1a5t_A Delta prime, HOLB; zinc 97.0 0.0011 3.6E-08 55.8 6.0 48 11-59 4-51 (334)
216 2chq_A Replication factor C sm 97.0 0.00081 2.8E-08 55.5 5.2 41 14-56 22-62 (319)
217 2ehv_A Hypothetical protein PH 97.0 0.00042 1.4E-08 55.3 3.2 25 29-53 27-51 (251)
218 1ypw_A Transitional endoplasmi 97.0 0.00062 2.1E-08 64.1 4.8 35 29-63 235-269 (806)
219 2r44_A Uncharacterized protein 97.0 0.00035 1.2E-08 58.5 2.8 44 14-61 32-75 (331)
220 1c9k_A COBU, adenosylcobinamid 96.9 0.0004 1.4E-08 53.2 2.8 25 34-59 1-25 (180)
221 2xkx_A Disks large homolog 4; 96.9 0.0098 3.4E-07 55.2 12.6 160 30-245 529-706 (721)
222 1fnn_A CDC6P, cell division co 96.9 0.0013 4.6E-08 55.8 6.4 42 15-56 23-68 (389)
223 1sxj_B Activator 1 37 kDa subu 96.9 0.0013 4.3E-08 54.5 5.8 41 14-56 26-66 (323)
224 3e70_C DPA, signal recognition 96.9 0.00065 2.2E-08 57.1 4.0 27 30-56 127-153 (328)
225 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00075 2.6E-08 59.9 4.6 31 32-62 64-94 (499)
226 4a74_A DNA repair and recombin 96.9 0.00045 1.6E-08 54.3 2.8 29 28-56 21-49 (231)
227 2cvh_A DNA repair and recombin 96.9 0.00065 2.2E-08 53.0 3.6 35 29-63 17-53 (220)
228 1vma_A Cell division protein F 96.9 0.00068 2.3E-08 56.4 3.9 27 30-56 102-128 (306)
229 3pxi_A Negative regulator of g 96.9 0.0012 4.2E-08 61.6 6.0 48 15-64 186-243 (758)
230 1rj9_A FTSY, signal recognitio 96.9 0.00071 2.4E-08 56.2 3.9 26 31-56 101-126 (304)
231 2eyu_A Twitching motility prot 96.9 0.00076 2.6E-08 54.8 3.9 28 29-56 22-49 (261)
232 2i3b_A HCR-ntpase, human cance 96.8 0.00066 2.3E-08 52.4 3.3 24 33-56 2-25 (189)
233 3p32_A Probable GTPase RV1496/ 96.8 0.0015 5.3E-08 55.3 5.9 29 28-56 75-103 (355)
234 2r2a_A Uncharacterized protein 96.8 0.00092 3.1E-08 52.0 4.0 27 29-55 2-28 (199)
235 3tif_A Uncharacterized ABC tra 96.8 0.00064 2.2E-08 54.3 3.2 27 30-56 29-55 (235)
236 3b9q_A Chloroplast SRP recepto 96.8 0.00085 2.9E-08 55.7 4.0 27 30-56 98-124 (302)
237 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00079 2.7E-08 52.9 3.7 27 30-56 21-47 (235)
238 2qm8_A GTPase/ATPase; G protei 96.8 0.0017 6E-08 54.7 5.6 36 21-56 44-79 (337)
239 1u0j_A DNA replication protein 96.8 0.0026 9E-08 51.6 6.3 28 31-58 103-130 (267)
240 2orw_A Thymidine kinase; TMTK, 96.7 0.0009 3.1E-08 51.3 3.3 25 32-56 3-27 (184)
241 1ojl_A Transcriptional regulat 96.7 0.0017 5.8E-08 53.9 5.2 41 16-56 9-49 (304)
242 2cbz_A Multidrug resistance-as 96.7 0.00088 3E-08 53.6 3.2 27 30-56 29-55 (237)
243 2qen_A Walker-type ATPase; unk 96.7 0.0027 9.3E-08 52.9 6.4 33 33-65 32-64 (350)
244 1n0w_A DNA repair protein RAD5 96.7 0.0009 3.1E-08 53.1 3.2 27 29-55 21-47 (243)
245 2pcj_A ABC transporter, lipopr 96.7 0.00068 2.3E-08 53.7 2.4 27 30-56 28-54 (224)
246 1b0u_A Histidine permease; ABC 96.7 0.00097 3.3E-08 54.2 3.2 28 29-56 29-56 (262)
247 1mv5_A LMRA, multidrug resista 96.7 0.001 3.6E-08 53.3 3.3 28 29-56 25-52 (243)
248 2og2_A Putative signal recogni 96.6 0.0013 4.3E-08 56.0 3.9 27 30-56 155-181 (359)
249 2onk_A Molybdate/tungstate ABC 96.6 0.0012 4.2E-08 52.8 3.5 24 33-56 25-48 (240)
250 3gfo_A Cobalt import ATP-bindi 96.6 0.00089 3E-08 54.8 2.7 27 30-56 32-58 (275)
251 3tqf_A HPR(Ser) kinase; transf 96.6 0.0011 3.8E-08 50.2 2.9 33 31-64 15-47 (181)
252 1cr0_A DNA primase/helicase; R 96.6 0.0011 3.9E-08 54.5 3.3 32 25-56 28-59 (296)
253 2px0_A Flagellar biosynthesis 96.6 0.0012 4.1E-08 54.7 3.4 27 30-56 103-129 (296)
254 1g8p_A Magnesium-chelatase 38 96.6 0.0008 2.7E-08 56.5 2.4 24 34-57 47-70 (350)
255 2olj_A Amino acid ABC transpor 96.6 0.0011 3.9E-08 53.8 3.2 27 30-56 48-74 (263)
256 3b85_A Phosphate starvation-in 96.6 0.0012 4E-08 51.8 3.1 25 31-55 21-45 (208)
257 3upu_A ATP-dependent DNA helic 96.6 0.00064 2.2E-08 59.7 1.8 50 7-56 16-69 (459)
258 4g1u_C Hemin import ATP-bindin 96.6 0.00099 3.4E-08 54.3 2.8 27 30-56 35-61 (266)
259 2zu0_C Probable ATP-dependent 96.6 0.0015 5E-08 53.3 3.7 26 30-55 44-69 (267)
260 2ixe_A Antigen peptide transpo 96.6 0.0012 4E-08 54.0 3.2 27 30-56 43-69 (271)
261 2f1r_A Molybdopterin-guanine d 96.6 0.00053 1.8E-08 52.1 1.0 24 33-56 3-26 (171)
262 1z2a_A RAS-related protein RAB 96.6 0.0014 4.6E-08 48.5 3.3 26 30-55 3-28 (168)
263 2yhs_A FTSY, cell division pro 96.6 0.0015 5.1E-08 57.7 4.0 27 30-56 291-317 (503)
264 1vpl_A ABC transporter, ATP-bi 96.6 0.0012 4.2E-08 53.4 3.2 27 30-56 39-65 (256)
265 2ff7_A Alpha-hemolysin translo 96.6 0.001 3.4E-08 53.6 2.7 27 30-56 33-59 (247)
266 2ghi_A Transport protein; mult 96.6 0.0012 4.2E-08 53.5 3.2 27 30-56 44-70 (260)
267 3kl4_A SRP54, signal recogniti 96.6 0.0014 4.8E-08 57.0 3.6 27 30-56 95-121 (433)
268 1sgw_A Putative ABC transporte 96.5 0.0011 3.8E-08 52.2 2.7 27 30-56 33-59 (214)
269 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0015 5.1E-08 52.7 3.5 26 30-55 27-52 (250)
270 1ji0_A ABC transporter; ATP bi 96.5 0.0011 3.7E-08 53.2 2.7 27 30-56 30-56 (240)
271 2pze_A Cystic fibrosis transme 96.5 0.0011 3.9E-08 52.6 2.7 27 30-56 32-58 (229)
272 1g6h_A High-affinity branched- 96.5 0.0011 3.7E-08 53.7 2.7 27 30-56 31-57 (257)
273 2wji_A Ferrous iron transport 96.5 0.0015 5E-08 48.7 3.2 23 32-54 3-25 (165)
274 2dyk_A GTP-binding protein; GT 96.5 0.0018 6E-08 47.6 3.6 23 33-55 2-24 (161)
275 2b8t_A Thymidine kinase; deoxy 96.5 0.0019 6.6E-08 51.1 3.9 29 28-56 8-36 (223)
276 1ky3_A GTP-binding protein YPT 96.5 0.0016 5.6E-08 48.8 3.3 27 29-55 5-31 (182)
277 2lkc_A Translation initiation 96.5 0.002 6.9E-08 48.2 3.8 27 29-55 5-31 (178)
278 2ged_A SR-beta, signal recogni 96.5 0.002 7E-08 49.0 3.9 27 29-55 45-71 (193)
279 2yz2_A Putative ABC transporte 96.5 0.0014 4.9E-08 53.3 3.2 28 29-56 30-57 (266)
280 1ypw_A Transitional endoplasmi 96.5 0.00071 2.4E-08 63.6 1.5 33 30-62 509-541 (806)
281 1oix_A RAS-related protein RAB 96.5 0.0016 5.4E-08 49.9 3.2 24 32-55 29-52 (191)
282 3dm5_A SRP54, signal recogniti 96.5 0.0017 5.9E-08 56.6 3.8 26 31-56 99-124 (443)
283 1lw7_A Transcriptional regulat 96.5 0.0015 5.2E-08 55.5 3.4 28 32-59 170-197 (365)
284 2nzj_A GTP-binding protein REM 96.5 0.0018 6E-08 48.3 3.4 24 31-54 3-26 (175)
285 1kao_A RAP2A; GTP-binding prot 96.5 0.0018 6.2E-08 47.6 3.3 24 32-55 3-26 (167)
286 2f9l_A RAB11B, member RAS onco 96.5 0.0019 6.4E-08 49.7 3.5 24 32-55 5-28 (199)
287 3clv_A RAB5 protein, putative; 96.5 0.0024 8.3E-08 48.6 4.2 27 29-55 4-30 (208)
288 2qi9_C Vitamin B12 import ATP- 96.5 0.0015 5.2E-08 52.6 3.1 27 30-56 24-50 (249)
289 2wjg_A FEOB, ferrous iron tran 96.4 0.0017 5.8E-08 49.2 3.2 25 31-55 6-30 (188)
290 2gj8_A MNME, tRNA modification 96.4 0.0017 5.9E-08 48.8 3.2 26 30-55 2-27 (172)
291 2dr3_A UPF0273 protein PH0284; 96.4 0.0018 6.1E-08 51.4 3.3 34 30-63 21-59 (247)
292 1upt_A ARL1, ADP-ribosylation 96.4 0.0024 8.1E-08 47.4 3.9 26 29-54 4-29 (171)
293 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0017 5.8E-08 55.1 3.3 27 30-56 28-54 (359)
294 1r6b_X CLPA protein; AAA+, N-t 96.4 0.002 6.9E-08 60.1 4.1 29 33-61 489-517 (758)
295 2ihy_A ABC transporter, ATP-bi 96.4 0.0016 5.5E-08 53.4 3.1 27 30-56 45-71 (279)
296 3tvt_A Disks large 1 tumor sup 96.4 0.021 7.2E-07 47.0 9.8 26 29-57 97-122 (292)
297 2wsm_A Hydrogenase expression/ 96.4 0.0021 7.3E-08 50.2 3.6 27 30-56 28-54 (221)
298 2ewv_A Twitching motility prot 96.4 0.002 7E-08 55.0 3.8 28 29-56 133-160 (372)
299 3rlf_A Maltose/maltodextrin im 96.4 0.0021 7E-08 55.0 3.7 27 30-56 27-53 (381)
300 2yyz_A Sugar ABC transporter, 96.4 0.0021 7.1E-08 54.7 3.7 28 29-56 26-53 (359)
301 2nq2_C Hypothetical ABC transp 96.4 0.0017 5.8E-08 52.5 3.0 27 30-56 29-55 (253)
302 1u8z_A RAS-related protein RAL 96.4 0.0023 7.9E-08 47.1 3.6 25 31-55 3-27 (168)
303 2hxs_A RAB-26, RAS-related pro 96.4 0.0024 8.2E-08 47.7 3.7 27 29-55 3-29 (178)
304 2p67_A LAO/AO transport system 96.4 0.0036 1.2E-07 52.8 5.2 33 24-56 48-80 (341)
305 1nrj_B SR-beta, signal recogni 96.4 0.0024 8.4E-08 49.7 3.9 28 29-56 9-36 (218)
306 2zej_A Dardarin, leucine-rich 96.4 0.0017 5.8E-08 49.3 2.8 22 33-54 3-24 (184)
307 2www_A Methylmalonic aciduria 96.4 0.0023 8E-08 54.1 4.0 27 30-56 72-98 (349)
308 2hf9_A Probable hydrogenase ni 96.4 0.0022 7.4E-08 50.3 3.5 27 30-56 36-62 (226)
309 2it1_A 362AA long hypothetical 96.4 0.0022 7.5E-08 54.5 3.7 28 29-56 26-53 (362)
310 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0019 6.4E-08 48.8 3.0 26 30-55 2-27 (189)
311 2ce2_X GTPase HRAS; signaling 96.4 0.0019 6.5E-08 47.4 2.9 23 33-55 4-26 (166)
312 1qvr_A CLPB protein; coiled co 96.4 0.0033 1.1E-07 59.5 5.2 39 16-56 177-215 (854)
313 1zu4_A FTSY; GTPase, signal re 96.4 0.0025 8.5E-08 53.3 3.9 27 30-56 103-129 (320)
314 1v43_A Sugar-binding transport 96.3 0.0023 8E-08 54.6 3.7 27 30-56 35-61 (372)
315 3lxw_A GTPase IMAP family memb 96.3 0.002 6.9E-08 51.7 3.2 28 28-55 17-44 (247)
316 1nlf_A Regulatory protein REPA 96.3 0.0019 6.6E-08 52.7 3.1 26 30-55 28-53 (279)
317 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0022 7.4E-08 53.6 3.4 32 32-63 123-156 (331)
318 1fzq_A ADP-ribosylation factor 96.3 0.0023 8E-08 48.4 3.3 27 29-55 13-39 (181)
319 1c1y_A RAS-related protein RAP 96.3 0.0024 8.1E-08 47.1 3.3 23 32-54 3-25 (167)
320 2gza_A Type IV secretion syste 96.3 0.0014 4.7E-08 55.8 2.1 35 23-57 166-200 (361)
321 3jvv_A Twitching mobility prot 96.3 0.0027 9.3E-08 53.9 3.9 27 30-56 121-147 (356)
322 1z47_A CYSA, putative ABC-tran 96.3 0.0024 8.3E-08 54.1 3.5 27 30-56 39-65 (355)
323 3tui_C Methionine import ATP-b 96.3 0.0026 8.9E-08 54.1 3.7 27 30-56 52-78 (366)
324 2fn4_A P23, RAS-related protei 96.3 0.0025 8.5E-08 47.7 3.3 26 30-55 7-32 (181)
325 3lxx_A GTPase IMAP family memb 96.3 0.0023 7.8E-08 50.9 3.2 27 29-55 26-52 (239)
326 1yrb_A ATP(GTP)binding protein 96.3 0.0033 1.1E-07 50.5 4.2 29 28-56 10-38 (262)
327 2erx_A GTP-binding protein DI- 96.3 0.0025 8.6E-08 47.1 3.2 23 32-54 3-25 (172)
328 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.002 6.7E-08 57.3 2.9 25 33-57 42-66 (500)
329 3tw8_B RAS-related protein RAB 96.3 0.0023 7.8E-08 47.9 2.9 26 29-54 6-31 (181)
330 1gwn_A RHO-related GTP-binding 96.2 0.0023 7.8E-08 49.7 2.9 32 24-55 20-51 (205)
331 3sop_A Neuronal-specific septi 96.2 0.0022 7.6E-08 52.3 3.0 24 33-56 3-26 (270)
332 1ek0_A Protein (GTP-binding pr 96.2 0.0023 7.7E-08 47.3 2.8 24 32-55 3-26 (170)
333 1pzn_A RAD51, DNA repair and r 96.2 0.0024 8.1E-08 54.1 3.2 28 29-56 128-155 (349)
334 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0029 9.9E-08 53.9 3.7 29 28-56 29-57 (362)
335 1z08_A RAS-related protein RAB 96.2 0.0026 8.8E-08 47.1 3.0 26 30-55 4-29 (170)
336 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0024 8.3E-08 48.3 2.9 27 29-55 4-30 (184)
337 1moz_A ARL1, ADP-ribosylation 96.2 0.0019 6.6E-08 48.5 2.4 25 30-54 16-40 (183)
338 3q72_A GTP-binding protein RAD 96.2 0.0026 9E-08 46.9 3.0 22 32-53 2-23 (166)
339 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0022 7.4E-08 56.4 2.9 29 28-56 134-162 (460)
340 1g29_1 MALK, maltose transport 96.2 0.0028 9.7E-08 54.1 3.5 27 30-56 27-53 (372)
341 3d31_A Sulfate/molybdate ABC t 96.2 0.0019 6.5E-08 54.7 2.4 27 30-56 24-50 (348)
342 2atv_A RERG, RAS-like estrogen 96.2 0.0036 1.2E-07 47.8 3.9 28 28-55 24-51 (196)
343 2pjz_A Hypothetical protein ST 96.2 0.0025 8.5E-08 51.8 3.0 25 32-56 30-54 (263)
344 3pxi_A Negative regulator of g 96.2 0.006 2.1E-07 56.9 6.0 33 34-66 523-560 (758)
345 2h57_A ADP-ribosylation factor 96.2 0.0021 7.4E-08 48.8 2.5 27 29-55 18-44 (190)
346 2o52_A RAS-related protein RAB 96.2 0.0022 7.5E-08 49.4 2.6 26 29-54 22-47 (200)
347 3bwd_D RAC-like GTP-binding pr 96.2 0.0035 1.2E-07 47.0 3.7 27 29-55 5-31 (182)
348 2bbs_A Cystic fibrosis transme 96.2 0.0023 7.8E-08 52.8 2.8 27 30-56 62-88 (290)
349 3ihw_A Centg3; RAS, centaurin, 96.2 0.0037 1.3E-07 47.5 3.8 28 28-55 16-43 (184)
350 3kfv_A Tight junction protein 96.2 0.021 7.2E-07 47.3 8.6 93 29-155 142-236 (308)
351 2oil_A CATX-8, RAS-related pro 96.2 0.0029 9.9E-08 48.2 3.2 27 29-55 22-48 (193)
352 3q85_A GTP-binding protein REM 96.2 0.0033 1.1E-07 46.5 3.4 22 33-54 3-24 (169)
353 1xx6_A Thymidine kinase; NESG, 96.2 0.0043 1.5E-07 47.9 4.1 28 29-56 5-32 (191)
354 2iwr_A Centaurin gamma 1; ANK 96.2 0.0027 9.3E-08 47.5 2.9 27 29-55 4-30 (178)
355 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0061 2.1E-07 56.9 5.8 28 29-56 204-231 (758)
356 1vg8_A RAS-related protein RAB 96.2 0.0031 1.1E-07 48.4 3.3 26 30-55 6-31 (207)
357 3nh6_A ATP-binding cassette SU 96.2 0.0017 5.8E-08 54.0 1.8 27 30-56 78-104 (306)
358 1z0j_A RAB-22, RAS-related pro 96.2 0.0027 9.2E-08 47.0 2.8 25 31-55 5-29 (170)
359 1svi_A GTP-binding protein YSX 96.2 0.0031 1E-07 48.0 3.2 27 29-55 20-46 (195)
360 1pui_A ENGB, probable GTP-bind 96.2 0.0016 5.6E-08 50.3 1.7 26 29-54 23-48 (210)
361 2v3c_C SRP54, signal recogniti 96.1 0.0028 9.4E-08 55.3 3.2 26 31-56 98-123 (432)
362 3kkq_A RAS-related protein M-R 96.1 0.0036 1.2E-07 47.1 3.5 27 29-55 15-41 (183)
363 3pqc_A Probable GTP-binding pr 96.1 0.0032 1.1E-07 47.7 3.2 26 30-55 21-46 (195)
364 3gd7_A Fusion complex of cysti 96.1 0.003 1E-07 54.3 3.3 27 30-56 45-71 (390)
365 1m2o_B GTP-binding protein SAR 96.1 0.003 1E-07 48.2 3.0 26 30-55 21-46 (190)
366 1ksh_A ARF-like protein 2; sma 96.1 0.0037 1.3E-07 47.2 3.5 26 30-55 16-41 (186)
367 1zd9_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 47.9 3.1 27 29-55 19-45 (188)
368 1g16_A RAS-related protein SEC 96.1 0.003 1E-07 46.7 2.9 23 32-54 3-25 (170)
369 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0039 1.3E-07 46.5 3.6 25 31-55 6-30 (177)
370 2a9k_A RAS-related protein RAL 96.1 0.0035 1.2E-07 47.1 3.3 26 30-55 16-41 (187)
371 3bc1_A RAS-related protein RAB 96.1 0.0031 1.1E-07 47.7 3.0 25 30-54 9-33 (195)
372 3hr8_A Protein RECA; alpha and 96.1 0.0033 1.1E-07 53.3 3.4 35 30-64 59-98 (356)
373 3con_A GTPase NRAS; structural 96.1 0.0029 9.8E-08 48.0 2.8 25 31-55 20-44 (190)
374 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0034 1.2E-07 47.2 3.2 25 31-55 4-28 (186)
375 1tq4_A IIGP1, interferon-induc 96.1 0.0034 1.2E-07 54.3 3.5 26 30-55 67-92 (413)
376 2p5s_A RAS and EF-hand domain 96.1 0.0041 1.4E-07 47.7 3.7 28 28-55 24-51 (199)
377 2bov_A RAla, RAS-related prote 96.1 0.004 1.4E-07 47.7 3.6 27 29-55 11-37 (206)
378 2zts_A Putative uncharacterize 96.1 0.0034 1.2E-07 49.8 3.2 25 30-54 28-52 (251)
379 3oes_A GTPase rhebl1; small GT 96.1 0.0031 1.1E-07 48.4 2.9 27 29-55 21-47 (201)
380 1p9r_A General secretion pathw 96.1 0.0043 1.5E-07 53.8 4.0 29 29-57 164-192 (418)
381 2y8e_A RAB-protein 6, GH09086P 96.1 0.0027 9.1E-08 47.4 2.4 24 31-54 13-36 (179)
382 1zj6_A ADP-ribosylation factor 96.1 0.0041 1.4E-07 47.1 3.5 26 29-54 13-38 (187)
383 1r2q_A RAS-related protein RAB 96.1 0.0031 1.1E-07 46.5 2.8 24 31-54 5-28 (170)
384 1j8m_F SRP54, signal recogniti 96.1 0.0073 2.5E-07 49.9 5.3 25 32-56 98-122 (297)
385 2g6b_A RAS-related protein RAB 96.1 0.0035 1.2E-07 46.9 3.0 26 30-55 8-33 (180)
386 2efe_B Small GTP-binding prote 96.0 0.0035 1.2E-07 46.9 3.0 26 30-55 10-35 (181)
387 4gzl_A RAS-related C3 botulinu 96.0 0.0039 1.3E-07 48.2 3.3 27 29-55 27-53 (204)
388 1z06_A RAS-related protein RAB 96.0 0.004 1.4E-07 47.2 3.3 26 29-54 17-42 (189)
389 3t1o_A Gliding protein MGLA; G 96.0 0.0041 1.4E-07 47.2 3.4 28 30-57 12-39 (198)
390 3t5g_A GTP-binding protein RHE 96.0 0.0026 8.7E-08 47.8 2.2 25 30-54 4-28 (181)
391 2gno_A DNA polymerase III, gam 96.0 0.0058 2E-07 50.7 4.5 38 16-55 4-41 (305)
392 2b6h_A ADP-ribosylation factor 96.0 0.004 1.4E-07 47.6 3.3 26 29-54 26-51 (192)
393 1z0f_A RAB14, member RAS oncog 96.0 0.0037 1.3E-07 46.6 3.0 26 30-55 13-38 (179)
394 3c5c_A RAS-like protein 12; GD 96.0 0.0041 1.4E-07 47.3 3.3 27 29-55 18-44 (187)
395 1oxx_K GLCV, glucose, ABC tran 96.0 0.002 6.9E-08 54.6 1.7 27 30-56 29-55 (353)
396 2fh5_B SR-beta, signal recogni 96.0 0.0042 1.4E-07 48.1 3.4 26 30-55 5-30 (214)
397 2bme_A RAB4A, RAS-related prot 96.0 0.0033 1.1E-07 47.4 2.7 26 30-55 8-33 (186)
398 3k53_A Ferrous iron transport 96.0 0.0039 1.3E-07 50.6 3.3 24 32-55 3-26 (271)
399 4bas_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 47.5 3.1 26 29-54 14-39 (199)
400 3k1j_A LON protease, ATP-depen 96.0 0.0033 1.1E-07 57.2 3.0 25 33-57 61-85 (604)
401 2gf0_A GTP-binding protein DI- 96.0 0.0052 1.8E-07 46.8 3.8 25 30-54 6-30 (199)
402 1v5w_A DMC1, meiotic recombina 96.0 0.0048 1.7E-07 52.0 3.9 26 30-55 120-145 (343)
403 2qu8_A Putative nucleolar GTP- 96.0 0.0051 1.8E-07 48.3 3.8 26 30-55 27-52 (228)
404 2j37_W Signal recognition part 96.0 0.0045 1.6E-07 54.9 3.7 27 30-56 99-125 (504)
405 1r8s_A ADP-ribosylation factor 95.9 0.0053 1.8E-07 45.1 3.6 22 34-55 2-23 (164)
406 3llu_A RAS-related GTP-binding 95.9 0.0034 1.2E-07 48.1 2.6 29 28-56 16-44 (196)
407 2fg5_A RAB-22B, RAS-related pr 95.9 0.0035 1.2E-07 47.8 2.6 27 29-55 20-46 (192)
408 2r8r_A Sensor protein; KDPD, P 95.9 0.0065 2.2E-07 48.1 4.1 35 30-64 4-43 (228)
409 3lda_A DNA repair protein RAD5 95.9 0.0039 1.3E-07 53.7 3.1 24 30-53 176-199 (400)
410 1f6b_A SAR1; gtpases, N-termin 95.9 0.0041 1.4E-07 47.8 2.9 26 29-54 22-47 (198)
411 2il1_A RAB12; G-protein, GDP, 95.9 0.0041 1.4E-07 47.5 2.8 23 32-54 26-48 (192)
412 2h17_A ADP-ribosylation factor 95.9 0.0039 1.3E-07 47.0 2.7 27 29-55 18-44 (181)
413 1ls1_A Signal recognition part 95.9 0.0056 1.9E-07 50.5 3.8 26 31-56 97-122 (295)
414 3reg_A RHO-like small GTPase; 95.9 0.0043 1.5E-07 47.3 2.9 27 29-55 20-46 (194)
415 2q3h_A RAS homolog gene family 95.9 0.0055 1.9E-07 46.9 3.5 27 29-55 17-43 (201)
416 1nij_A Hypothetical protein YJ 95.9 0.0037 1.3E-07 52.1 2.7 25 31-55 3-27 (318)
417 2rcn_A Probable GTPase ENGC; Y 95.9 0.0051 1.8E-07 52.2 3.5 25 32-56 215-239 (358)
418 3kta_A Chromosome segregation 95.9 0.0059 2E-07 46.1 3.6 25 33-57 27-51 (182)
419 3tkl_A RAS-related protein RAB 95.9 0.0047 1.6E-07 46.9 3.0 26 30-55 14-39 (196)
420 2a5j_A RAS-related protein RAB 95.8 0.0052 1.8E-07 46.7 3.2 26 30-55 19-44 (191)
421 2oap_1 GSPE-2, type II secreti 95.8 0.0034 1.2E-07 55.9 2.3 27 30-56 258-284 (511)
422 2zr9_A Protein RECA, recombina 95.8 0.0047 1.6E-07 52.2 3.1 35 30-64 59-98 (349)
423 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0034 1.2E-07 52.7 2.2 35 22-56 161-195 (330)
424 2j1l_A RHO-related GTP-binding 95.8 0.0049 1.7E-07 47.9 3.0 25 30-54 32-56 (214)
425 2cxx_A Probable GTP-binding pr 95.8 0.0045 1.5E-07 46.7 2.7 23 33-55 2-24 (190)
426 3cbq_A GTP-binding protein REM 95.8 0.0042 1.4E-07 47.7 2.5 25 30-54 21-45 (195)
427 2xtp_A GTPase IMAP family memb 95.8 0.0058 2E-07 49.1 3.4 26 30-55 20-45 (260)
428 2yv5_A YJEQ protein; hydrolase 95.8 0.0061 2.1E-07 50.5 3.5 25 31-56 164-188 (302)
429 3cph_A RAS-related protein SEC 95.8 0.0069 2.3E-07 46.7 3.7 26 30-55 18-43 (213)
430 3a1s_A Iron(II) transport prot 95.8 0.0049 1.7E-07 49.8 2.9 26 30-55 3-28 (258)
431 3bh0_A DNAB-like replicative h 95.8 0.0066 2.3E-07 50.5 3.7 27 30-56 66-92 (315)
432 3dz8_A RAS-related protein RAB 95.8 0.0066 2.2E-07 46.1 3.4 27 30-56 21-47 (191)
433 1x3s_A RAS-related protein RAB 95.7 0.005 1.7E-07 46.7 2.8 26 30-55 13-38 (195)
434 2qag_B Septin-6, protein NEDD5 95.7 0.0077 2.6E-07 52.2 4.2 31 25-55 33-65 (427)
435 2xxa_A Signal recognition part 95.7 0.007 2.4E-07 52.7 3.9 27 30-56 98-124 (433)
436 2j0v_A RAC-like GTP-binding pr 95.7 0.0065 2.2E-07 46.9 3.4 27 29-55 6-32 (212)
437 2z43_A DNA repair and recombin 95.7 0.0048 1.6E-07 51.6 2.8 27 30-56 105-131 (324)
438 1w5s_A Origin recognition comp 95.7 0.0055 1.9E-07 52.4 3.2 27 30-56 48-76 (412)
439 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0052 1.8E-07 47.3 2.8 25 31-55 7-31 (206)
440 2f7s_A C25KG, RAS-related prot 95.7 0.0059 2E-07 47.4 3.1 27 29-55 22-48 (217)
441 2fna_A Conserved hypothetical 95.7 0.0067 2.3E-07 50.6 3.7 31 33-63 31-63 (357)
442 2gf9_A RAS-related protein RAB 95.7 0.0072 2.5E-07 45.8 3.5 26 30-55 20-45 (189)
443 1z6t_A APAF-1, apoptotic prote 95.7 0.012 4.3E-07 52.9 5.6 40 15-54 130-169 (591)
444 1qvr_A CLPB protein; coiled co 95.7 0.0062 2.1E-07 57.7 3.6 24 33-56 589-612 (854)
445 1u94_A RECA protein, recombina 95.7 0.0072 2.5E-07 51.3 3.6 34 30-63 61-99 (356)
446 1zbd_A Rabphilin-3A; G protein 95.6 0.0072 2.5E-07 46.3 3.3 24 32-55 8-31 (203)
447 2cjw_A GTP-binding protein GEM 95.6 0.0074 2.5E-07 46.1 3.3 25 31-55 5-29 (192)
448 2i1q_A DNA repair and recombin 95.6 0.0058 2E-07 50.9 2.9 26 30-55 96-121 (322)
449 2x77_A ADP-ribosylation factor 95.6 0.005 1.7E-07 46.6 2.2 25 30-54 20-44 (189)
450 3q3j_B RHO-related GTP-binding 95.6 0.0087 3E-07 46.6 3.7 27 29-55 24-50 (214)
451 2ffh_A Protein (FFH); SRP54, s 95.6 0.0085 2.9E-07 52.0 3.8 26 31-56 97-122 (425)
452 3shw_A Tight junction protein 95.6 0.031 1.1E-06 49.0 7.3 28 28-58 220-247 (468)
453 1u0l_A Probable GTPase ENGC; p 95.6 0.0061 2.1E-07 50.4 2.7 24 32-55 169-192 (301)
454 1ega_A Protein (GTP-binding pr 95.6 0.0068 2.3E-07 50.1 3.0 26 30-55 6-31 (301)
455 2ew1_A RAS-related protein RAB 95.5 0.0077 2.6E-07 46.5 3.1 26 30-55 24-49 (201)
456 2fu5_C RAS-related protein RAB 95.5 0.0043 1.5E-07 46.6 1.7 24 31-54 7-30 (183)
457 2fv8_A H6, RHO-related GTP-bin 95.5 0.007 2.4E-07 46.7 2.8 26 30-55 23-48 (207)
458 3def_A T7I23.11 protein; chlor 95.5 0.015 5E-07 46.9 4.9 35 21-55 25-59 (262)
459 3ozx_A RNAse L inhibitor; ATP 95.5 0.0078 2.7E-07 53.9 3.5 28 29-56 22-49 (538)
460 2gco_A H9, RHO-related GTP-bin 95.5 0.0068 2.3E-07 46.6 2.7 26 30-55 23-48 (201)
461 2r6a_A DNAB helicase, replicat 95.5 0.0097 3.3E-07 52.1 3.9 27 30-56 201-227 (454)
462 3tsz_A Tight junction protein 95.4 0.025 8.5E-07 48.6 6.2 31 29-62 229-259 (391)
463 1h65_A Chloroplast outer envel 95.4 0.016 5.5E-07 46.9 4.8 28 28-55 35-62 (270)
464 3b1v_A Ferrous iron uptake tra 95.4 0.01 3.4E-07 48.4 3.6 24 32-55 3-26 (272)
465 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0098 3.4E-07 53.3 3.7 27 30-56 45-71 (538)
466 2hup_A RAS-related protein RAB 95.4 0.0081 2.8E-07 46.2 2.8 26 30-55 27-52 (201)
467 4dkx_A RAS-related protein RAB 95.4 0.012 4E-07 46.2 3.7 26 29-54 10-35 (216)
468 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.013 4.4E-07 43.1 3.7 23 32-54 23-45 (149)
469 3b5x_A Lipid A export ATP-bind 95.3 0.0098 3.3E-07 53.8 3.6 29 28-56 365-393 (582)
470 3f9v_A Minichromosome maintena 95.3 0.0044 1.5E-07 56.3 1.1 26 34-59 329-354 (595)
471 3e1s_A Exodeoxyribonuclease V, 95.3 0.011 3.8E-07 53.4 3.8 25 32-56 204-228 (574)
472 2atx_A Small GTP binding prote 95.3 0.011 3.7E-07 44.9 3.2 25 31-55 17-41 (194)
473 2j9r_A Thymidine kinase; TK1, 95.3 0.016 5.5E-07 45.4 4.1 28 29-56 25-52 (214)
474 3iby_A Ferrous iron transport 95.3 0.0095 3.2E-07 48.0 2.9 23 33-55 2-24 (256)
475 2g3y_A GTP-binding protein GEM 95.3 0.012 4E-07 46.0 3.4 24 31-54 36-59 (211)
476 3i8s_A Ferrous iron transport 95.2 0.011 3.9E-07 48.0 3.4 25 31-55 2-26 (274)
477 3j16_B RLI1P; ribosome recycli 95.2 0.012 4.2E-07 53.4 3.8 28 29-56 100-127 (608)
478 3b60_A Lipid A export ATP-bind 95.2 0.0087 3E-07 54.1 2.8 27 30-56 367-393 (582)
479 1ko7_A HPR kinase/phosphatase; 95.2 0.013 4.4E-07 48.7 3.6 50 13-63 113-174 (314)
480 3euj_A Chromosome partition pr 95.2 0.011 3.8E-07 52.1 3.3 24 33-56 30-53 (483)
481 2qnr_A Septin-2, protein NEDD5 95.2 0.0094 3.2E-07 49.3 2.7 23 32-54 18-40 (301)
482 2obl_A ESCN; ATPase, hydrolase 95.2 0.014 4.7E-07 49.3 3.7 35 22-57 62-96 (347)
483 2yl4_A ATP-binding cassette SU 95.1 0.0093 3.2E-07 54.1 2.8 27 30-56 368-394 (595)
484 4dhe_A Probable GTP-binding pr 95.1 0.0059 2E-07 47.6 1.3 27 29-55 26-52 (223)
485 3cpj_B GTP-binding protein YPT 95.1 0.015 5E-07 45.4 3.6 26 30-55 11-36 (223)
486 3r7w_A Gtpase1, GTP-binding pr 95.1 0.013 4.4E-07 48.5 3.4 25 31-55 2-26 (307)
487 3gj0_A GTP-binding nuclear pro 95.1 0.0091 3.1E-07 46.5 2.2 27 29-55 12-39 (221)
488 1tf7_A KAIC; homohexamer, hexa 95.1 0.011 3.9E-07 52.7 3.1 31 22-52 28-59 (525)
489 2dpy_A FLII, flagellum-specifi 95.1 0.014 4.8E-07 50.9 3.6 36 21-57 147-182 (438)
490 3qf4_B Uncharacterized ABC tra 95.0 0.011 3.7E-07 53.7 2.9 28 29-56 378-405 (598)
491 1t9h_A YLOQ, probable GTPase E 95.0 0.0042 1.4E-07 51.6 0.2 24 31-54 172-195 (307)
492 2a5y_B CED-4; apoptosis; HET: 95.0 0.024 8.1E-07 50.8 5.1 39 16-54 135-174 (549)
493 3iev_A GTP-binding protein ERA 95.0 0.012 4.2E-07 48.7 3.0 28 28-55 6-33 (308)
494 2q6t_A DNAB replication FORK h 95.0 0.015 5.3E-07 50.7 3.7 28 29-56 197-224 (444)
495 1ni3_A YCHF GTPase, YCHF GTP-b 95.0 0.014 4.9E-07 50.1 3.4 26 29-54 17-42 (392)
496 1xp8_A RECA protein, recombina 95.0 0.013 4.3E-07 50.0 3.0 35 30-64 72-111 (366)
497 3ozx_A RNAse L inhibitor; ATP 95.0 0.011 3.8E-07 53.0 2.7 27 30-56 292-318 (538)
498 1tf7_A KAIC; homohexamer, hexa 94.9 0.013 4.5E-07 52.2 3.2 28 29-56 278-305 (525)
499 3io5_A Recombination and repai 94.9 0.014 4.6E-07 48.7 2.8 23 34-56 30-52 (333)
500 1yqt_A RNAse L inhibitor; ATP- 94.9 0.014 4.9E-07 52.2 3.2 27 30-56 310-336 (538)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=5.4e-44 Score=284.48 Aligned_cols=204 Identities=50% Similarity=0.853 Sum_probs=193.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|.|||||||+|+|+.|+++||++|||+++++|+++...+++|..++.++..|..+|++++..++.+++.. ..|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~---~~~ 77 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGN 77 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS---SSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc---CCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988754 468
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
||+||||++..|++.|...+...+..++.+|+|++|++++.+|+.+|+.|+.||+.||..++||. ++.++..|
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~~l~~r 150 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQR 150 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTCCCBCC
T ss_pred eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCceeccc
Confidence 99999999999999999999888999999999999999999999999999999999999999996 56678899
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
.+|+.+.+++|++.|+.++.++.+||.+.+.++.|||++++++|++.|.++|.+
T Consensus 151 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 151 EDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp GGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999998863
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.4e-44 Score=290.03 Aligned_cols=212 Identities=46% Similarity=0.821 Sum_probs=184.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
+.-|+..|+|+|||||||+|+.|+++||++++++++++++.+..++++|..+++++.+|..+|++.+..++.+++....+
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~ 85 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC 85 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
.+|||+||||++..|++.|. +.+..++.+|+|++|++++.+|+.+|+.|+.||+.||..|+||..+++|+.|+++|
T Consensus 86 ~~g~ILDGfPRt~~Qa~~L~----~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L 161 (230)
T 3gmt_A 86 ANGYLFDGFPRTIAQADAMK----EAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPL 161 (230)
T ss_dssp TTCEEEESCCCSHHHHHHHH----HTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEecCCCCcHHHHHHHH----HhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCcc
Confidence 78999999999999998765 35678999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc-----------CcEEEEeCCCChhHHHHHHHHHhc
Q 025937 190 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----------GIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 190 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
++|.+|+.+.+++|++.|+.++.++.+||.+. +.++.|||++++++|++.|.++|.
T Consensus 162 ~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 162 VQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999973 789999999999999999988763
No 3
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=3.3e-42 Score=281.66 Aligned_cols=238 Identities=50% Similarity=0.895 Sum_probs=221.7
Q ss_pred ccCCCCchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc
Q 025937 8 NLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 87 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~ 87 (246)
++...+..+++.+..+.+.....++++|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.|..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~ 84 (243)
T 3tlx_A 5 NLENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE 84 (243)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT
T ss_pred hhhhcchHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc
Confidence 35566888888888888877777899999999999999999999999999999999999999988899999999999999
Q ss_pred CCCcCHHHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025937 88 GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 167 (246)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~ 167 (246)
|..++++.+..++...+....+..+||+||||++..+...|.+.+...+..|+.+|+|++|++++.+|+.+|+.|+.||+
T Consensus 85 g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~ 164 (243)
T 3tlx_A 85 GKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGR 164 (243)
T ss_dssp TCCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTE
T ss_pred CCCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCc
Confidence 99999999999999988776667899999999999999999988888888999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 168 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 168 ~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.||..|+||+.++.|+.|+++++.|.+++.+.+++|+..|+.++.++.+||...+.++.||++.++++|++.|.++|+
T Consensus 165 ~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 165 IYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp EEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999988899999999999999999999875
No 4
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=5.8e-39 Score=257.76 Aligned_cols=213 Identities=46% Similarity=0.817 Sum_probs=202.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|+|+|||||||+|+.|++++|+.++++++++++.+..+++.+..+.+.+..+..++++.+..++...+....++.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999888887666789
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
+|+||+|++..+...+.+.+...+..||.+|+|++|++++.+|+.+|+.|+.||+.||..++||+.+++|+.|+.++..|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 99999999999999998888778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+++.+.+++|+..|+....++.++|.+.+.++.||+++++++++++|.+.|+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999875
No 5
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=2.1e-38 Score=254.41 Aligned_cols=213 Identities=46% Similarity=0.812 Sum_probs=202.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|+|+|||||||+|+.|++.+|+.++++++++++.+.++++.+..+..++..+..+++..+..++...+....++.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999888887666789
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
+|+||+|.+..+...+.+.+...+..++.+|+|++|++++.+|+.+|+.|+.||+.||..++||+.+++|+.|+.++..|
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 99999999999999998888778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+++.+.+++|+..|+..+.++.++|...+.++.||+++++++++++|.+.|+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLG 213 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999875
No 6
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.5e-38 Score=251.66 Aligned_cols=216 Identities=49% Similarity=0.901 Sum_probs=196.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
+.++++|+|.|+|||||||+++.|++++|+.++++++++++....+++.|..+++.+..|..++++.+..++..++....
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 45668999999999999999999999999999999999999888889999999999999999999998888888887766
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
++.++|+||+|++..+...+.+.+...+..||++|+|++|++++.+|+.+|..++.||+.||..|+||+.++.|+.++.+
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 161 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEP 161 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccc
Confidence 67899999999999988888876666677899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
+..+.++..+.+++++..|+....++.++|.+.+.++.||+++++++|++.|.+.|
T Consensus 162 l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 162 LVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 99998889999999999999999999999987778999999999999999998764
No 7
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.2e-37 Score=247.52 Aligned_cols=187 Identities=31% Similarity=0.516 Sum_probs=168.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC-
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP- 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 107 (246)
.+++++|+|+|||||||+|+|+.|+++||++||++++++|+.+..++++|..++.++..|..+|++++..++.+++...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 4677789999999999999999999999999999999999999999999999999999999999999999999988664
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
...+|||+||||++..|+..|++. ...++.+|+|++|++++.+|+.+|..
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~----~~~~~~vi~l~v~~e~~~~Rl~~R~~-------------------------- 155 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKE----VCPCLCVINFDVSEEVMRKRLLKRAE-------------------------- 155 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHSCC----------------------------
T ss_pred ccccCcccccCCCcHHHHHHHHHh----CCccCEEEeccCCHHHHHHHHhcccc--------------------------
Confidence 455799999999999999988765 36789999999999999999999852
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
...|.+|+.+.+++|++.|+.+..++.+||.+.+.++.|||++++++|++.|.+.|++
T Consensus 156 -~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 156 -TSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred -cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 1346788899999999999999999999999989999999999999999999998864
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=6.6e-36 Score=242.83 Aligned_cols=217 Identities=53% Similarity=0.952 Sum_probs=197.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
+.++++|+|.|+|||||||+++.|++++++.++++++++++.+..++++|..+++++..+..++++.+..++..++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 45668999999999999999999999999999999999999888888999999999999999999999899888887655
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
++.+||+||||++..+...|.+++...+..++++|+|+++++++.+|+.+|..++.||+.||..|+||..+++|+.++..
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 56789999999999998888777766667899999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
++.|.++..+.+++|+..|+....++.++|...+.++.||+++++++|++.|.+.|+
T Consensus 173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~ 229 (233)
T 1ak2_A 173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229 (233)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 888888899999999999999988999999876778999999999999999998874
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=1e-35 Score=239.60 Aligned_cols=217 Identities=52% Similarity=0.920 Sum_probs=193.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc-CCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK-KPS 108 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 108 (246)
+++++|+|.|+|||||||+++.|++.+++.++++|+++++....+++.|..+++.+..|..++++.+..++..++. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 5678999999999999999999999999999999999999888889999999999999999999988888888776 444
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
.+.++|+||||++..+...|.+++...+..||++|+|++|++++.+|+.+|..++.||+.||..|+||+.++.+...+++
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~ 161 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA 161 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence 56789999999999988888777766778899999999999999999999999999999999999999988655445567
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
+..|.+++.+.+++|+..|.....++.++|.+.+.++.||++.++++|++.|.+.|.+
T Consensus 162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 219 (220)
T ss_dssp CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 7888888899999999999999999998998667889999999999999999998753
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=1.3e-35 Score=238.05 Aligned_cols=209 Identities=47% Similarity=0.830 Sum_probs=190.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
|+|+|+|+|||||||+++.|++.+|+.++++++++++.+..+++.|..+++.+..+..++++.+..++...+....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 47999999999999999999999999999999999998888889999999999999999999999988888876555578
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 192 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r 192 (246)
+|+||+|++..+...|. ..+..|+++|+|++|++++.+|+.+|..++.||+.||..++||+.++.|+.++.++..|
T Consensus 81 ~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r 156 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR 156 (214)
T ss_dssp EEEESCCCSHHHHHHHH----HTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred EEEeCCCCCHHHHHHHH----hcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccC
Confidence 99999999988776553 34567899999999999999999999989999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcHHHHHHHhhc-----CcEEEEeCCCChhHHHHHHHHHhc
Q 025937 193 KDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----GIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+++.+.+++|+..|+..+.++.++|.+. +.++.|||++++++|++.|.+.|+
T Consensus 157 ~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l~ 214 (214)
T 1e4v_A 157 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214 (214)
T ss_dssp TTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999754 578999999999999999998873
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=1.2e-35 Score=239.85 Aligned_cols=212 Identities=33% Similarity=0.578 Sum_probs=190.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|.|+|||||||+++.|++.+|+.++++++++++.+..+++.|..+++.+..|..++++.+..++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence 5799999999999999999999999999999999999777788899999999999988999888888877765433 678
Q ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC-CCccccccCCCCCCCC-CCCCCCCccc
Q 025937 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS-SGRTYHTKFAPPKVPG-VDDVTGEPLI 190 (246)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~-~g~~~~~~~~pp~~~~-~~~~~~~~~~ 190 (246)
+|+||+|++..+...|.+.+...+..|+++|+|++|++++.+|+.+|..++. ||+.||..|+||..++ +|+.|+.++.
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~ 159 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALS 159 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccc
Confidence 9999999999888888776666677899999999999999999999988877 9999999999999999 9999999999
Q ss_pred cCCCCcHH-HHHHHHHHHHHhcHHHHH---HHhh-----cCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 191 QRKDDTAA-VLKSRLEAFHKQTEPVID---YYSK-----KGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 191 ~r~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.|.+++.+ .+++|+..|+....++.+ +|.. .+.++.||+++++++|++.|.+.|+
T Consensus 160 ~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l~ 223 (223)
T 2xb4_A 160 ARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223 (223)
T ss_dssp CCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 99888888 999999999999988888 8876 5678999999999999999998873
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=100.00 E-value=5.6e-33 Score=224.60 Aligned_cols=209 Identities=41% Similarity=0.736 Sum_probs=185.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
.++++|+|.|+|||||||+++.|++.+|+.+++++++++.....++++|..+.+++..|..++++....++..++... .
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~ 83 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-T 83 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-c
Confidence 456899999999999999999999999999999999999988888899999999999998899888777776676653 3
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
+.++|+|+++.+..+...+..+ ..++.+|+|++|++++.+|+..|..++.+|+.||..++||+.++.|+.+++++
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l 158 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPL 158 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccc
Confidence 5689999999998876655432 46789999999999999999999888889999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 190 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 190 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..|.++..+.+++|+..|+....++.++|.+.+.++.||++ ++++|++.|.+.+.
T Consensus 159 ~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~ 213 (227)
T 1zd8_A 159 IQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQ 213 (227)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHH
Confidence 99888889999999999999999999999866778999999 99999999998875
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.98 E-value=2.8e-31 Score=213.91 Aligned_cols=206 Identities=35% Similarity=0.672 Sum_probs=176.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
.++++|+|.|+|||||||+++.|++++++.++++|++++.....++..|..+.+.+..|..++++.+..++..++.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 35679999999999999999999999999999999999998888889999999999999999998887777766654322
Q ss_pred -CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 110 -QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 110 -~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
..++|+||+|++..+...+. ..+..|+++|+|+++++++.+|+..|..++.||+.||..++||+.++++ .+
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~----~~ 154 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SR 154 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG----GG
T ss_pred cCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccc----cc
Confidence 36899999999987766543 3456789999999999999999999999999999999999999877654 46
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+..+.++..+.++.|+..|+....++.++|.. .++.||++++++++++.|.+.+.
T Consensus 155 l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~ 209 (222)
T 1zak_A 155 LTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLG 209 (222)
T ss_dssp CBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHH
Confidence 66777778889999999999888888777753 57889999999999999988764
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=3.3e-27 Score=187.18 Aligned_cols=186 Identities=37% Similarity=0.702 Sum_probs=159.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (246)
.+.++++|+|.|+|||||||+|+.|++.+|++++++|+++++.+..++..+..+.+.+..|..++++....++...+...
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence 35677899999999999999999999999999999999999988888889999999999998888888888777776654
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
..+.++|+|++|.+..+...+.+.+...+..|+.+|+|++|++++.+|+.+|.
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~--------------------------- 148 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG--------------------------- 148 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---------------------------
Confidence 44578999999999998888887777777789999999999999999998763
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
|++++.+.++.++..|.....++.++|. ..++.||++.+++++++.|.+.+++
T Consensus 149 ----r~~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~~~eev~~~I~~~l~~ 201 (201)
T 2cdn_A 149 ----RADDTDDVILNRMKVYRDETAPLLEYYR--DQLKTVDAVGTMDEVFARALRALGK 201 (201)
T ss_dssp ----CTTCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEEEECCSCHHHHHHHHHHHTTC
T ss_pred ----CCCCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 1234668888999999888777777773 3678899999999999999998763
No 15
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=7.6e-26 Score=176.88 Aligned_cols=183 Identities=37% Similarity=0.663 Sum_probs=152.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
++++|+|+|+|||||||+++.|++++|+++++.|+++++.+..+++.|..+.+.+..+...++......+...+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 567999999999999999999999999999999999998877888899999999999988888887777766553
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 190 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~ 190 (246)
.++|+||++....+...+...+.+.+..|+.+|+|++|++++.+|+.+|... .
T Consensus 78 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~---------------------------~ 130 (186)
T 3cm0_A 78 ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL---------------------------E 130 (186)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH---------------------------H
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc---------------------------C
Confidence 2499999999988877777666666667899999999999999999877310 0
Q ss_pred cCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 191 QRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 191 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.|.+++.+.++.|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 131 ~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 131 GRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 1234567889999999888877777777765568889999999999999998774
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.94 E-value=5.4e-25 Score=172.65 Aligned_cols=187 Identities=29% Similarity=0.456 Sum_probs=155.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
..+++|+|.|+|||||||+++.|++.+|+.+++.|+++++....+++.+..+.+.+..+...+++....++...+... .
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~ 82 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-Q 82 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-T
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-C
Confidence 456799999999999999999999999999999999999887778889999999999998888887777777776554 4
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
+.++|+|++|....+...+...+.. +..++++|+|++|++++.+|+..|...
T Consensus 83 ~~~vi~d~~~~~~~~~~~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~--------------------------- 134 (194)
T 1qf9_A 83 GKNFLVDGFPRNEENNNSWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGES--------------------------- 134 (194)
T ss_dssp TCCEEEETCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTT---------------------------
T ss_pred CCCEEEeCcCCCHHHHHHHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhcccc---------------------------
Confidence 5789999999998887777655432 236889999999999999999887420
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 190 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 190 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.++..+.+..|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 135 ~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~ 190 (194)
T 1qf9_A 135 SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK 190 (194)
T ss_dssp SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 11345567899999999988888888888766667889999999999999998774
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.94 E-value=4e-25 Score=174.02 Aligned_cols=185 Identities=36% Similarity=0.592 Sum_probs=150.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC-C
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-S 108 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~ 108 (246)
.++++|+|.|+|||||||+++.|++.+|+.+++.+++++.....++..|..+.+.+..|..++.+....++...+... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 456799999999999999999999999999999999999887778889999999998888888887766666655432 3
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
.+.++|+|++|+...+...+...+ ..++.+|+|++|++++.+|+..|....
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l~~~~e~~~~R~~~R~~~~------------------------- 137 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETMTQRLLKRGETS------------------------- 137 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHTSS-------------------------
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHccCCcC-------------------------
Confidence 457899999999988776655432 568899999999999999998774210
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+.+++.+.+..|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 138 --~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~ 192 (196)
T 2c95_A 138 --GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192 (196)
T ss_dssp --SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence 1223456788899999998888887777765667889999999999999988764
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.94 E-value=1.9e-24 Score=169.77 Aligned_cols=187 Identities=27% Similarity=0.497 Sum_probs=148.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc-cCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc----
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK---- 105 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~---- 105 (246)
++++|+|.|+|||||||+|+.|++.+|+++++.|++++....+ .+.++..++..+..|...+++....++...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 3679999999999999999999999999999999999886653 56678888888888888887765554443332
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCC
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 185 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~ 185 (246)
....+.++|+||+|.+..+...+.+.+.. ...++.+|+|++|++++.+|+.+|...
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~----------------------- 137 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNNEICIERCLERGKS----------------------- 137 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHHT-----------------------
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECCHHHHHHHHHccccc-----------------------
Confidence 22335789999999998877766554432 246889999999999999999877410
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 186 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 186 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..|.++..+.++.++..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 138 ----~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 138 ----SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193 (196)
T ss_dssp ----SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 12345567888999999999999988888876678899999999999999998874
No 19
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.93 E-value=4.3e-24 Score=174.46 Aligned_cols=209 Identities=37% Similarity=0.690 Sum_probs=172.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
.++.+|+|.|++||||||+++.|++++|+..++.++++.......+..+..+...+..+..+++..+.+.+...+... .
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~ 103 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-R 103 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-C
Confidence 356899999999999999999999999999999999888765555667777777888888888877777666555433 3
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
+.+|++++++....+...+... ..++++|+|++|++++.+|+.+|..+..+|+.++....+|..--.|+.|++++
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBC
T ss_pred CCeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCccccccccccccc
Confidence 4678999999886555443321 45789999999999999999999888888887776678887777777777888
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 190 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 190 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..++.+..+.+.+++..|.....++.++|.+.+.++.||++.+ ++|++.|.+.+.
T Consensus 179 ~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~ 233 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS 233 (246)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence 8777888899999999999988899999988788999999998 999999998875
No 20
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.93 E-value=1.7e-24 Score=171.65 Aligned_cols=186 Identities=27% Similarity=0.541 Sum_probs=148.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHH-ccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (246)
+.++++|+|+|+|||||||+++.|++.+|+.++++|+++++... .++..+..++.++.+|...+++....++...+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 45667999999999999999999999999999999999988654 56778888888888888888776666555544321
Q ss_pred -CCC-cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCC
Q 025937 108 -SCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 185 (246)
Q Consensus 108 -~~~-~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~ 185 (246)
..+ .+||+||+|++..+...+...+ ..++++|+|++|++++.+|+.+|...
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i~l~~~~e~~~~Rl~~R~~~----------------------- 144 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPEDIMLERLLERGKT----------------------- 144 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHHH-----------------------
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHhcccc-----------------------
Confidence 122 5799999999988877665432 45899999999999999999877410
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 186 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 186 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
-.+.+++.+.++.|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 145 ----~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 145 ----SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp ----HCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 01234567888999999998888888878766678889999999999999998774
No 21
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=171.14 Aligned_cols=184 Identities=29% Similarity=0.534 Sum_probs=148.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC-CC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-SC 109 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~ 109 (246)
++++|+|.|+|||||||+|+.|++.+|+.+++++++++.....+++.+..+.+.+..|..++++....++...+... ..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 35699999999999999999999999999999999999887777888999999999888888887777666655432 34
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 189 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~ 189 (246)
+.++|+||+|....+...|...+ ..|+++|+|++|++++.+|+.+|....
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~~-------------------------- 140 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRI----GDPQLVICMDCSADTMTNRLLQMSRSS-------------------------- 140 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHTCCCC--------------------------
T ss_pred CccEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHcCCCCC--------------------------
Confidence 57899999999988776664421 368899999999999999998874210
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 190 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 190 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+.+++.+.+..|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 141 -~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 195 (199)
T 2bwj_A 141 -LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195 (199)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 0122345788889988888888887778765667889999999999999988764
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.82 E-value=3.3e-18 Score=131.52 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=115.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHcc----CchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 107 (246)
++|+|.|+|||||||+++.| +.+|+.++++++++++..... ...+......... + ...+...+...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG----DGVVARLCVEELGT- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHC----TTHHHHHHHHHHCS-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCC----HHHHHHHHHHHHHh-
Confidence 68999999999999999999 999999999999999866542 2233333333332 2 23344455555533
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
..+..+|+||+ ....+...+.+.+ ..++.+|+|++|++++.+|+..|...
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~------------------------- 125 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLL----GDSVYIVAVHSPPKIRYKRMIERLRS------------------------- 125 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHH----CSCEEEEEEECCHHHHHHHHHTCC---------------------------
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHh----CCCcEEEEEECCHHHHHHHHHhccCC-------------------------
Confidence 34578999998 8888888776654 35779999999999999999987420
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
....+.+.+.+++...... ....+.. ... +.||++.+++++.++|.+.+.
T Consensus 126 ----~~~~~~~~~~~r~~~~~~~--~~~~~~~-~ad-~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 126 ----DDSKEISELIRRDREELKL--GIGEVIA-MAD-YIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp ------CCCHHHHHHHHHHHHHH--THHHHHH-TCS-EEEECCSCHHHHHHHHHHHHH
T ss_pred ----CCcchHHHHHHHHHhhhcc--ChHhHHH-hCC-EEEECCCCHHHHHHHHHHHHH
Confidence 0124556676666432211 1222222 122 456777899999999988764
No 23
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.73 E-value=1.8e-16 Score=127.87 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=112.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC--cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHH-HHHHHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-IDEAMK 105 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~l~ 105 (246)
..++++|+|.|+|||||||+++.|++.++ ..++... .+.+++.|..+++++..+..+.+....-+ ...+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999986 4444331 23456788888888887765444332211 111211
Q ss_pred CC--------CCCcceEec----------CCCCCHHH--HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 106 KP--------SCQKGFILD----------GFPRTEVQ--AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 106 ~~--------~~~~g~iid----------~~~~~~~~--~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
.. ..+..+|+| |+++...+ ...+... ...+..||++|+|++|++++.+|+.+|...
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~--- 172 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF-AINGLYPDLTIYLNVSAEVGRERIIKNSRD--- 172 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcCCC---
Confidence 11 124567889 88765433 3344433 234578999999999999999999887421
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..+.+.....+.+++...+..+ .+.+ ...++.||++++++++++.|.+.|.
T Consensus 173 ------------------------~dr~e~~~~~~~~rv~~~y~~l---~~~~--~~~~~vIDa~~s~eev~~~I~~~l~ 223 (229)
T 4eaq_A 173 ------------------------QNRLDQEDLKFHEKVIEGYQEI---IHNE--SQRFKSVNADQPLENVVEDTYQTII 223 (229)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHHHH---TTTC--TTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred ------------------------ccchhhhhHHHHHHHHHHHHHH---HHhC--CCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 0111222345555554433222 1111 2368899999999999999988764
No 24
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.72 E-value=3.3e-16 Score=121.01 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=95.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHh-HcCcceeehHHHHHHHHHccCc-----hHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD-EYCLCHLATGDMLRAAVAAKTP-----LGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~-~~~~~~i~~~~l~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (246)
|++|+|.|+|||||||+++.|++ .+|+.+++.+ .+++.+...+. +....... ....+...+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 57899999999999999999999 6899999985 45554432111 11111111 11223344454543
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCC
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 185 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~ 185 (246)
....+.++|+|+++....+...+.+.+...+. +..+|+|++|++++.+|+..|..
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~------------------------ 128 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRGT------------------------ 128 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCGG------------------------
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHhcccc------------------------
Confidence 32446789999999888777777666554443 34799999999999999998752
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 186 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 186 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
...+.+.++.++..|+... .+ ..+ .+|++.+ +++...|...+
T Consensus 129 -------~~~~~~~i~~~~~~~~~~~-----~~---~~~-~id~~~~-~~v~~~i~~~l 170 (181)
T 1ly1_A 129 -------KAVPIDVLRSMYKSMREYL-----GL---PVY-NGTPGKP-KAVIFDVDGTL 170 (181)
T ss_dssp -------GCCCHHHHHHHHHHHHHHH-----TC---CCC--------------------
T ss_pred -------CCCCHHHHHHHHHHhhccC-----CC---Ccc-ccCCCCC-ceeeehhhhhh
Confidence 1234577777777776641 11 123 3787765 77777776655
No 25
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.1e-16 Score=126.25 Aligned_cols=167 Identities=15% Similarity=0.209 Sum_probs=99.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 107 (246)
..++.+|+|.|+|||||||+++.|++.+|+.+++.|+++..... ..+ ...+.. +..........++.. +
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i----~~~~~~~~~~~~~~~e~~~l~~-l--- 91 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTV----GELFTERGEAGFRELERNMLHE-V--- 91 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCH----HHHHHHHHHHHHHHHHHHHHHH-H---
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcH----HHHHHhcChHHHHHHHHHHHHH-H---
Confidence 45567999999999999999999999999999999988765321 112 222211 100001111222222 2
Q ss_pred CCCcceEec---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh-cCcCCCCCCccccccCCCCCCCCCCC
Q 025937 108 SCQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRWIHPSSGRTYHTKFAPPKVPGVDD 183 (246)
Q Consensus 108 ~~~~g~iid---~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~-~r~~~~~~g~~~~~~~~pp~~~~~~~ 183 (246)
.....+|++ |.+........+.+ ++.+|+|++|++++.+|+. .+..++.
T Consensus 92 ~~~~~~vi~~ggg~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~Rp~------------------- 144 (199)
T 3vaa_A 92 AEFENVVISTGGGAPCFYDNMEFMNR--------TGKTVFLNVHPDVLFRRLRIAKQQRPI------------------- 144 (199)
T ss_dssp TTCSSEEEECCTTGGGSTTHHHHHHH--------HSEEEEEECCHHHHHHHHHHTGGGCGG-------------------
T ss_pred hhcCCcEEECCCcEEccHHHHHHHHc--------CCEEEEEECCHHHHHHHHhcCCCCCCC-------------------
Confidence 234567776 33333333333322 4799999999999999998 5432110
Q ss_pred CCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCC-ChhHHHHHHHHHhc
Q 025937 184 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 245 (246)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~ev~~~i~~~l~ 245 (246)
. .+.+.+.+..++........+ +|.. .. +.||++. +++++++.|.+.+.
T Consensus 145 ------~--~~~~~~~~~~~i~~~~~~r~~---~y~~-ad-~~Idt~~~s~ee~~~~I~~~l~ 194 (199)
T 3vaa_A 145 ------L--QGKEDDELMDFIIQALEKRAP---FYTQ-AQ-YIFNADELEDRWQIESSVQRLQ 194 (199)
T ss_dssp ------G--TTCCHHHHHHHHHHHHHHHHH---HHTT-SS-EEEECCCCSSHHHHHHHHHHHH
T ss_pred ------c--CCCChhhHHHHHHHHHHHHHH---HHhh-CC-EEEECCCCCHHHHHHHHHHHHH
Confidence 1 133445555555554443333 3443 22 4567664 99999999988764
No 26
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.72 E-value=5e-16 Score=121.47 Aligned_cols=163 Identities=22% Similarity=0.214 Sum_probs=102.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc---CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHH-----------H
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 98 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~ 98 (246)
++|+|+|+|||||||+++.|++.+ |+.+++++. ...+..|..+.+.+.+|...+..... .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 999998752 22345666677777666443332211 1
Q ss_pred HHHHHHcCCCCCcceEec----------CCCCCH--HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 99 IIDEAMKKPSCQKGFILD----------GFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid----------~~~~~~--~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
++...+. .+..+|+| |+++.. .+...+...+ ..+..||.+|+|++|++++.+|+.+|..
T Consensus 75 ~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----- 145 (195)
T 2pbr_A 75 KIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFA-TRGVKPDITLLLDIPVDIALRRLKEKNR----- 145 (195)
T ss_dssp THHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHTTTC-----
T ss_pred HHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHh-hcCCCCCEEEEEeCCHHHHHHHhhccCc-----
Confidence 1112221 23345555 555433 2333232222 2345789999999999999999986420
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHH-HHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+ . +.+..++. .|.... ..+ +.++.||++.++++++++|.+.+.
T Consensus 146 --------------------------~~-~-~~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 146 --------------------------FE-N-KEFLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALS 190 (195)
T ss_dssp --------------------------CC-C-HHHHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred --------------------------cc-h-HHHHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHH
Confidence 11 2 33444443 333321 122 357889999999999999998775
No 27
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.71 E-value=2.4e-16 Score=124.46 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=103.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH---HHHHHHHHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEAMKK 106 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~l~~~l~~ 106 (246)
..+++|+|.|++||||||+++.|++.+|+.+++.|++..... ...+..+..+.+... ...+...+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~-- 83 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL-- 83 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--
Confidence 446799999999999999999999999999999977642211 111122323333221 22222333
Q ss_pred CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCC
Q 025937 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 186 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~ 186 (246)
..+.++|+|+..........+.. ....++.+|+|++|.+++.+|+.+|..+
T Consensus 84 -~~~~~vivd~~~~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~Rl~~R~~~------------------------ 134 (202)
T 3t61_A 84 -ASREPVVVSCSALKRSYRDKLRE----SAPGGLAFVFLHGSESVLAERMHHRTGH------------------------ 134 (202)
T ss_dssp -TSSSCCEEECCCCSHHHHHHHHH----TSTTCCEEEEEECCHHHHHHHHHHHHSS------------------------
T ss_pred -hcCCCEEEECCCCCHHHHHHHHH----hcCCCeEEEEEeCCHHHHHHHHHHhhcc------------------------
Confidence 34567899987776666655443 2345579999999999999999987521
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 187 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 187 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
....+.+...+..+.. + + .....+.||++.+++++++.|.+.|.
T Consensus 135 -------~~~~~~~~~~~~~~~~----~---~-~~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 135 -------FMPSSLLQTQLETLED----P---R-GEVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp -------CCCHHHHHHHHHHCCC----C---T-TSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHhcCC----C---C-CCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 1123333333332221 1 1 11246788999999999999988774
No 28
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.70 E-value=7.8e-16 Score=121.94 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=102.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc--CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHH----------
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI---------- 99 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------- 99 (246)
+++|+|.|++||||||+++.|++.+ |..++.+.. +.+++.|..+++.+.++..++.....-+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 444443311 2467788888888888776665443211
Q ss_pred --HHHHHcCCCCCcceEecCCCC------------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 100 --IDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 100 --l~~~l~~~~~~~g~iid~~~~------------~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
+...+. .+..+|.|.|.. ..+....+.... ..+..||++|+|++|++++.+|+.+|....
T Consensus 76 ~~i~p~l~---~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~-- 149 (205)
T 4hlc_A 76 LKVIPALK---EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEVGRERIIKNSRDQ-- 149 (205)
T ss_dssp HTHHHHHH---TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHC-------
T ss_pred HHHHHHHH---cCCEEEecCcccchHHHHhccccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHHHHHHHHhcCCcc--
Confidence 111221 233445565431 122233333322 234789999999999999999998874210
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhh-cCcEEEEeCCCChhHHHHHHHHHh
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.|-+.....+.+++.. ...+++.. ...++.||+++++++|++.|.+.+
T Consensus 150 -------------------------dr~e~~~~~f~~~v~~------~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i 198 (205)
T 4hlc_A 150 -------------------------NRLDQEDLKFHEKVIE------GYQEIIHNESQRFKSVNADQPLENVVEDTYQTI 198 (205)
T ss_dssp ---------------------------CCHHHHHHHHHHHH------HHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred -------------------------cchhccCHHHHHHHHH------HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 0111111223333221 12222332 246899999999999999887765
Q ss_pred c
Q 025937 245 S 245 (246)
Q Consensus 245 ~ 245 (246)
.
T Consensus 199 ~ 199 (205)
T 4hlc_A 199 I 199 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.69 E-value=2.9e-15 Score=117.44 Aligned_cols=166 Identities=16% Similarity=0.185 Sum_probs=99.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc---CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHH-------HHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-------GIIDE 102 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~l~~ 102 (246)
++|+|+|++||||||+++.|++.+ |+.++..+. +.+++.|..+++.+..+...+..... ..+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 998886632 33456677777777655443332211 11222
Q ss_pred HHcCC-CCCcceEecCC----------CCC--HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccc
Q 025937 103 AMKKP-SCQKGFILDGF----------PRT--EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 169 (246)
Q Consensus 103 ~l~~~-~~~~g~iid~~----------~~~--~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~ 169 (246)
+... ..+..+++|.+ ++. ......+... ......||.+|+|++|++++.+|+.+|..
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~-------- 144 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-ATDGLIPDLTFYIDVDVETALKRKGELNR-------- 144 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHC---CC--------
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHH-hcCCCCCCEEEEEeCCHHHHHHHHhccCc--------
Confidence 3222 22344566643 332 2222222221 22345799999999999999999988721
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHH-HHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 170 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 170 ~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.+ .. .+..++. .|... .+.+ ...++.||++.++++++++|.+.++
T Consensus 145 -----------------------~~-~~-~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~ 190 (197)
T 2z0h_A 145 -----------------------FE-KR-EFLERVREGYLVL----AREH--PERIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp -----------------------CC-CH-HHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHTT
T ss_pred -----------------------cc-HH-HHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 11 11 3333333 33322 2222 2357889999999999999998875
No 30
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.68 E-value=1.6e-17 Score=131.95 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=107.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHH------
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE------ 102 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~------ 102 (246)
..++++|+|+|+|||||||+++.|++.++..++++ +++++ ...+++.|..++.++..+..++......+...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM 84 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999998776666 33332 11235667777777766655655433222211
Q ss_pred -HHcC-CCCCcceEecCCCCCH--HHHHH--H-HHHH---HhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccccc
Q 025937 103 -AMKK-PSCQKGFILDGFPRTE--VQAQK--L-DEML---EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 103 -~l~~-~~~~~g~iid~~~~~~--~~~~~--l-~~~l---~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
.+.. ...+..+|+|+++.+. .+... + ...+ ......|+++|+|++|++++.+|+.+|..
T Consensus 85 ~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----------- 153 (212)
T 2wwf_A 85 NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE----------- 153 (212)
T ss_dssp HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS-----------
T ss_pred HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc-----------
Confidence 0111 1123568889886431 11110 0 0111 11124789999999999999999865420
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
|.+ . +.+..++...+..... ...++.||++.+++++++.|.+.+.
T Consensus 154 -------------------r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l~ 198 (212)
T 2wwf_A 154 -------------------IYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEVT 198 (212)
T ss_dssp -------------------TTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHHT
T ss_pred -------------------ccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHHH
Confidence 111 1 4455555433322211 2357889999999999999998875
No 31
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.67 E-value=2e-15 Score=117.37 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=64.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
.++.|+|+|+|||||||+++.|++.+|+.+++.|+++.+... .... +.+.. |..........++......
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~--- 74 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIA----WIFEMEGEAGFRRREREMIEALCKL--- 74 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHH----HHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChh----hHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 356899999999999999999999999999999888776322 1111 11111 1000011122233222211
Q ss_pred CcceEecCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025937 110 QKGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 110 ~~g~iid~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
...+|..|. .........+.. ...+|+|++|++++.+|+.
T Consensus 75 ~~~vi~~gg~~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~ 116 (185)
T 3trf_A 75 DNIILATGGGVVLDEKNRQQISE--------TGVVIYLTASIDTQLKRIG 116 (185)
T ss_dssp SSCEEECCTTGGGSHHHHHHHHH--------HEEEEEEECCHHHHHHHHH
T ss_pred CCcEEecCCceecCHHHHHHHHh--------CCcEEEEECCHHHHHHHHh
Confidence 122333332 223333333322 1389999999999999993
No 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.67 E-value=4.1e-16 Score=121.64 Aligned_cols=175 Identities=13% Similarity=0.157 Sum_probs=95.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcC--HHHHHHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDEAM 104 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~l 104 (246)
+++|+|.|+|||||||+++.|+++++ +.+++.++++++........ ....+. ..... ...+...+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 99999999888754321100 000000 00000 111111221222
Q ss_pred cCCCCCcceEecCCCCCHHHHHHH----HHHHHhcCCCcCEEEEEecCHHHHHH-HHhc--CcCCCCCCccccccCCCCC
Q 025937 105 KKPSCQKGFILDGFPRTEVQAQKL----DEMLEKQGKKVDKVLNFAIDDAVLEE-RITG--RWIHPSSGRTYHTKFAPPK 177 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~~~~~~~l----~~~l~~~~~~~~~vI~L~~~~e~~~~-Rl~~--r~~~~~~g~~~~~~~~pp~ 177 (246)
........+|+|+++........+ .+.+... .|+++|+|++|++++.+ |+.. |.
T Consensus 79 ~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~~~R~----------------- 139 (192)
T 1kht_A 79 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSDETRV----------------- 139 (192)
T ss_dssp HHHHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTSSSCS-----------------
T ss_pred HhhccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhhcccC-----------------
Confidence 211124578999865311100000 0111111 36899999999999996 8876 42
Q ss_pred CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEE-eCCCChhHHHHHHHHHhc
Q 025937 178 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 178 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~ev~~~i~~~l~ 245 (246)
++....+.+..+...+.. .......|.. ..++.| |.+.+++++++.|.+.+.
T Consensus 140 --------------r~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i~ 192 (192)
T 1kht_A 140 --------------RDLDTASTIEQHQFMNRC-AAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVLR 192 (192)
T ss_dssp --------------SSCCCHHHHHHHHHHHHH-HHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred --------------CCcCCHHHHHHHHHHHHH-HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHhC
Confidence 122333444333322222 2222222322 234444 555679999999988763
No 33
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.66 E-value=6.1e-16 Score=124.21 Aligned_cols=175 Identities=13% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-------cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE 102 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 102 (246)
.++++|+|.|++||||||+++.|++.++ +.++.. ++ +.++++|..+++++.++...+.....-....
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5678999999999999999999999984 333322 22 2467888899998887743333221111111
Q ss_pred HHc-------C-CCCCcceEecCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025937 103 AMK-------K-PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (246)
Q Consensus 103 ~l~-------~-~~~~~g~iid~~~~~------------~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 162 (246)
+.. . ...+..+|.|.|..+ .+....+.... .-+..||++|+|++|++++.+|+.+|..
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~-~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~- 174 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWV-QGGFQPDLTVLFDVPPQIASARRGAVRM- 174 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCSSCGGGTTTCCCC-
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhccC-
Confidence 111 0 112345667866322 22223333222 2357899999999999999999988741
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHH-HHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHH
Q 025937 163 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 241 (246)
Q Consensus 163 ~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~ 241 (246)
.. +-+.....+..++. .|.. +.+.+ ...++.||+++++++|.+.|.
T Consensus 175 ---~d------------------------r~E~~~~ef~~rv~~~Y~~----la~~~--~~~~~vIDa~~s~eeV~~~I~ 221 (227)
T 3v9p_A 175 ---PD------------------------KFESESDAFFARTRAEYLR----RAQEA--PHRFVIVDSSEPIAQIRKQLE 221 (227)
T ss_dssp ---C---------------------------CCHHHHHHHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHH
T ss_pred ---cc------------------------chhhhhHHHHHHHHHHHHH----HHHHh--cCCEEEEeCCCCHHHHHHHHH
Confidence 00 11111233444433 3322 12222 236899999999999999999
Q ss_pred HHhc
Q 025937 242 KALS 245 (246)
Q Consensus 242 ~~l~ 245 (246)
+.|+
T Consensus 222 ~~l~ 225 (227)
T 3v9p_A 222 GVLA 225 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 34
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.65 E-value=5.3e-15 Score=117.79 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=106.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHHHHHHHHccCchHHHHHHHHHcCC--CcCHHHHH--------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLVV-------- 97 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~-------- 97 (246)
++++|+|.|++||||||+++.|++.++ +.++.+. + +.++++|..+++++.++. .+.+....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999984 4444332 1 246788899999888764 34432211
Q ss_pred ----HHHHHHHcCCCCCcceEecCCCC------------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 98 ----GIIDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 98 ----~~l~~~l~~~~~~~g~iid~~~~------------~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
..+...+ ..+..+|.|.|.. .......+.... ..+..||++|+|++|++++.+|+.+|..
T Consensus 79 ~~~~~~i~p~l---~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~-~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~ 154 (213)
T 4edh_A 79 QHLAGVIRPAL---ARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFV-QGDLRPDLTLVFDLPVEIGLARAAARGR 154 (213)
T ss_dssp HHHHHTHHHHH---HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHH---HCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 1111112 1234556676421 223333333322 2357899999999999999999988741
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHH
Q 025937 162 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240 (246)
Q Consensus 162 ~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i 240 (246)
.. +-+.....+..++ ..|... .+.+ ...++.||++.++++|++.|
T Consensus 155 ----~d------------------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~~I 200 (213)
T 4edh_A 155 ----LD------------------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQAGL 200 (213)
T ss_dssp ----CC------------------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHH
T ss_pred ----cC------------------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHHHH
Confidence 00 0111112334443 333322 2222 23689999999999999999
Q ss_pred HHHhc
Q 025937 241 QKALS 245 (246)
Q Consensus 241 ~~~l~ 245 (246)
.+.|.
T Consensus 201 ~~~l~ 205 (213)
T 4edh_A 201 DRLLP 205 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 35
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.65 E-value=2.3e-15 Score=121.55 Aligned_cols=176 Identities=20% Similarity=0.196 Sum_probs=101.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC---CCcCHHHHH---------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG---ELVSDDLVV--------- 97 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~--------- 97 (246)
-++++|+|.|++||||||+++.|++.++...++...+.++ +.++++|..+++++..+ ..+.+....
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999999985433331112222 25678899999888632 234432211
Q ss_pred ---HHHHHHHcCCCCCcceEecCCC----------C--CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025937 98 ---GIIDEAMKKPSCQKGFILDGFP----------R--TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (246)
Q Consensus 98 ---~~l~~~l~~~~~~~g~iid~~~----------~--~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 162 (246)
..+...+ ..+..+|.|.|. + ..+....+.... .-+..||++|+|++|++++.+|+.+|..
T Consensus 103 ~~~~~I~paL---~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~-~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~- 177 (236)
T 3lv8_A 103 LVENVIKPAL---ARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTA-LGDFKPDLTLYLDIDPKLGLERARGRGE- 177 (236)
T ss_dssp HHHHTHHHHH---HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHC-----C-
T ss_pred HHHHHHHHHH---HcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhcCC-
Confidence 1112222 123456666542 1 122333333322 2257899999999999999999988741
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHH
Q 025937 163 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 242 (246)
Q Consensus 163 ~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~ 242 (246)
.+ +-+.....+..++...+. ++....+.++.||+++++++|++.|.+
T Consensus 178 --~d-------------------------r~E~~~~~~~~rv~~~y~------~la~~~~~~~vIDa~~sieeV~~~I~~ 224 (236)
T 3lv8_A 178 --LD-------------------------RIEKMDISFFERARERYL------ELANSDDSVVMIDAAQSIEQVTADIRR 224 (236)
T ss_dssp --CC-------------------------TTTTSCHHHHHHHHHHHH------HHHHHCTTEEEEETTSCHHHHHHHHHH
T ss_pred --cc-------------------------hhhhhHHHHHHHHHHHHH------HHHHHCCCEEEEeCCCCHHHHHHHHHH
Confidence 00 011111234444432221 223322348999999999999999988
Q ss_pred Hhc
Q 025937 243 ALS 245 (246)
Q Consensus 243 ~l~ 245 (246)
.|+
T Consensus 225 ~l~ 227 (236)
T 3lv8_A 225 ALQ 227 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 36
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.65 E-value=4.6e-15 Score=115.75 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=95.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHc-cCchHHHHHHHHHcCCCcCH--HHHHHHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSD--DLVVGIIDEAM 104 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~l 104 (246)
++|+|.|+|||||||+++.|+++++ +.+++.++++.+.... .-..+. ..+ +...+. ..+...+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999997 8889988888765521 111110 000 111111 11122121222
Q ss_pred cCC---CCCcceEecCCCCCHHH--------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHH-Hhc--CcCCCCCCcccc
Q 025937 105 KKP---SCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITG--RWIHPSSGRTYH 170 (246)
Q Consensus 105 ~~~---~~~~g~iid~~~~~~~~--------~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~R-l~~--r~~~~~~g~~~~ 170 (246)
... ..+..+|+|+++....+ ...+.. ..|+.+|+|++|++++.+| +.. |...
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~l~~~~~~~~~rr~~~~~R~~~-------- 142 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE------INPSVIFLLEADPKIILSRQKRDTTRNRN-------- 142 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH------HCCSEEEEEECCHHHHHHHHHHCTTTCCC--------
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh------cCCCEEEEEeCCHHHHHHHHHhhcccCCC--------
Confidence 111 23567889987432221 122222 1378999999999998866 666 5210
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhcHHHHHHHhhcCcEEEE-eCCCChhHHHHHHHHHh
Q 025937 171 TKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 171 ~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~ev~~~i~~~l 244 (246)
+....+.+. .++... .......+. ...++.| |++.++++++++|.+.+
T Consensus 143 ----------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 143 ----------------------DYSDESVILETINFARY---AATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp ----------------------CCCSHHHHHHHHHHHHH---HHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ----------------------CccCHHHHHHHHHHHHH---HHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 111222222 222222 122222231 1356788 99999999999999876
No 37
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.64 E-value=2.6e-14 Score=113.74 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=103.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCccee-ehHHHHHHHHHccCchHHHHHHHHHcC-----CCcCHHHH---------
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV--------- 96 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i-~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~--------- 96 (246)
+++|+|.|++||||||+++.|++.+.-..+ ++ .+.++ +.++++|..+++++... ..+.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 579999999999999999999998832211 11 11122 35678899999988732 23444321
Q ss_pred ---HHHHHHHHcCCCCCcceEecCCCC------------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 97 ---VGIIDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 97 ---~~~l~~~l~~~~~~~g~iid~~~~------------~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
...+...+. .+..+|.|.|.. ..+....+.... .-+..||++|+|++|++++.+|+.+|..
T Consensus 80 ~~~~~~i~paL~---~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~-~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~ 155 (213)
T 4tmk_A 80 QLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV-LGDFRPDLTLYLDVTPEVGLKRARARGE 155 (213)
T ss_dssp HHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHH---CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHh-ccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 111222222 234556676532 122333333222 2357899999999999999999988741
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHH-HHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHH
Q 025937 162 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240 (246)
Q Consensus 162 ~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i 240 (246)
.+ +-+.....+..++. .|... ....+.+++||+++++++|++.|
T Consensus 156 ---~d-------------------------r~E~~~~~f~~rv~~~y~~l-------a~~~~~~~vIDa~~s~eeV~~~I 200 (213)
T 4tmk_A 156 ---LD-------------------------RIEQESFDFFNRTRARYLEL-------AAQDKSIHTIDATQPLEAVMDAI 200 (213)
T ss_dssp ---CC-------------------------TTTTSCHHHHHHHHHHHHHH-------HHTCTTEEEEETTSCHHHHHHHH
T ss_pred ---cc-------------------------chhhhHHHHHHHHHHHHHHH-------HHHCCcEEEECCCCCHHHHHHHH
Confidence 00 11111123334433 33321 22225789999999999999999
Q ss_pred HHHhc
Q 025937 241 QKALS 245 (246)
Q Consensus 241 ~~~l~ 245 (246)
.+.|+
T Consensus 201 ~~~l~ 205 (213)
T 4tmk_A 201 RTTVT 205 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 38
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.64 E-value=8.8e-15 Score=112.35 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=93.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 112 (246)
++|+|.|+|||||||+++.|++.+|+++++.|++++.. . +......+.. .+..........++ ..+. ...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~-~~l~----~~~ 72 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT-S-GMTVADVVAA---EGWPGFRRRESEAL-QAVA----TPN 72 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH-H-CSCHHHHHHH---HHHHHHHHHHHHHH-HHHC----CSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH-h-CCCHHHHHHH---cCHHHHHHHHHHHH-HHhh----cCC
Confidence 57999999999999999999999999999998887764 1 2222111110 01000011111222 2232 334
Q ss_pred eEec-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh--cCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 113 FILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT--GRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 113 ~iid-~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~--~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
+|++ |. +........+. .++.+|+|++|++++.+|+. .|..+
T Consensus 73 ~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r~~~------------------------- 119 (173)
T 1e6c_A 73 RVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQAHQ------------------------- 119 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHCSCC-------------------------
T ss_pred eEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccCCCC-------------------------
Confidence 6665 42 22222222222 14799999999999999998 76210
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
++....+....++..+.....+ .|.. ..+.||++ .+++++.+.|.+.+.
T Consensus 120 ----r~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 120 ----RPTLTGRPIAEEMEAVLREREA---LYQD--VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ----CCCTTHHHHHHHHHHHHHHHHH---HHHH--HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred ----CCcCCCCCHHHHHHHHHHHHHH---HHHh--CcEEEECCCCCHHHHHHHHHHHhc
Confidence 1111223334445444433332 2222 12467877 899999999998875
No 39
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.64 E-value=3.8e-15 Score=113.91 Aligned_cols=158 Identities=20% Similarity=0.282 Sum_probs=92.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (246)
|+|+|+|+|||||||+++.|++.+|+++++.|++.+... |..+.+.+.. +..........++ ..+. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~---~~~ 70 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS---EKE 70 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT---TSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh---ccC
Confidence 579999999999999999999999999999988876643 1222222221 2111111111222 2232 234
Q ss_pred ceEec-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCc
Q 025937 112 GFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 188 (246)
Q Consensus 112 g~iid-~~--~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~ 188 (246)
.+||+ |. +........ +. .++.+|+|++|++++.+|+..|..++.
T Consensus 71 ~~Vi~~g~~~~~~~~~~~~----l~----~~~~~i~l~~~~e~~~~R~~~r~~r~~------------------------ 118 (168)
T 2pt5_A 71 NVVISTGGGLGANEEALNF----MK----SRGTTVFIDIPFEVFLERCKDSKERPL------------------------ 118 (168)
T ss_dssp SEEEECCHHHHTCHHHHHH----HH----TTSEEEEEECCHHHHHHHCBCTTCCBG------------------------
T ss_pred CeEEECCCCEeCCHHHHHH----HH----cCCEEEEEECCHHHHHHHHhCCCCCCC------------------------
Confidence 56775 31 122222222 21 257999999999999999987631110
Q ss_pred cccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 189 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.. +..+.+...+... ...|.. ..++. +++.+++++++.|.+.+.
T Consensus 119 -~~---~~~~~i~~~~~~~-------~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 119 -LK---RPLDEIKNLFEER-------RKIYSK-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp -GG---SCGGGTHHHHHHH-------HHHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred -Cc---chHHHHHHHHHHH-------HHHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 00 1112222222211 122333 34555 888999999999998875
No 40
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.63 E-value=6.1e-15 Score=113.01 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=88.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHH--HHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKA--KEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
++|+|+|+|||||||+++.|++.+|+.+++.+.+..... .....+ ...+.. +
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~~~~~~~~l~~----------------------~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNEKLFEHFNKLAD----------------------E 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHHHHHHHHHHHTT----------------------C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHHHHHHHHHHHHh----------------------C
Confidence 489999999999999999999999999999976654311 001110 011111 1
Q ss_pred cceEecCC---------------CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCC
Q 025937 111 KGFILDGF---------------PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP 175 (246)
Q Consensus 111 ~g~iid~~---------------~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~p 175 (246)
..++.|.+ .........+... ...|+.+|+|++|++++.+|+.+|..
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~i~l~~~~e~~~~R~~~r~r-------------- 117 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDK----IKAKAKVVYLHADPSVIKKRLRVRGD-------------- 117 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHH----HTTTEEEEEEECCHHHHHHHHHHHSC--------------
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhcc----CCCCCEEEEEeCCHHHHHHHHHhcCC--------------
Confidence 22333321 1122333333322 25688999999999999999987631
Q ss_pred CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 176 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 176 p~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
+....+.++...+.|.. ....|. ...+.||++ .+++++++.|.+.++
T Consensus 118 -----------------~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~ 165 (173)
T 3kb2_A 118 -----------------EYIEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVE 165 (173)
T ss_dssp -----------------SCCCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred -----------------cchhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHh
Confidence 11122222222222222 222232 256789988 599999999998774
No 41
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.63 E-value=1.2e-14 Score=114.53 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=96.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc---CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHH----------HHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV----------VGI 99 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~ 99 (246)
++|+|.|++||||||+++.|++.| |..++.+.. +.+++.+..++..+......+.... ...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999988 555543311 2345566666666555433222211 112
Q ss_pred HHHHHcCCCCCcceEecCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025937 100 IDEAMKKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 167 (246)
Q Consensus 100 l~~~l~~~~~~~g~iid~~~~~------------~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~ 167 (246)
+...+ ..+..+|.|.|..+ ......+... ...+..||++|+|++|+++..+|...+.
T Consensus 75 I~~~L---~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~-~~~~~~PDl~i~Ld~~~e~~~~R~~~~d------- 143 (197)
T 3hjn_A 75 IKQYL---SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-ATDGLIPDLTFYIDVDVETALKRKGELN------- 143 (197)
T ss_dssp HHHHH---TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHC---C-------
T ss_pred HHHHH---HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhh-hhcCCCCCceeecCcChHHHHHhCcCcC-------
Confidence 22222 22344566765321 1222222222 2235789999999999999999954431
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHH-HHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhcC
Q 025937 168 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246 (246)
Q Consensus 168 ~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~~ 246 (246)
|-. . ..++.++. .|.. +.+.+ ...++.|||++++++|++.|.+.+++
T Consensus 144 ------------------------r~e-~-~ef~~rv~~~y~~----la~~~--~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 144 ------------------------RFE-K-REFLERVREGYLV----LAREH--PERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp ------------------------TTC-C-HHHHHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred ------------------------ccc-c-HHHHHHHHHHHHH----HHHhC--CCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 001 1 23444432 2222 11111 23688999999999999999998763
No 42
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.63 E-value=3.2e-15 Score=116.14 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=90.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
+++|+|+|+|||||||+++.|++++|+++++.|+++++... .. +.+.+. .|...........+...+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 71 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RS----IADIFATDGEQEFRRIEEDVVRAALAD---- 71 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CC----HHHHHHHhChHHHHHHHHHHHHHHHhc----
Confidence 35799999999999999999999999999999988776431 11 112221 12111122222223222211
Q ss_pred cceEec-CCC--CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 111 KGFILD-GFP--RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 111 ~g~iid-~~~--~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
..+|+. |.. ....... .+. .+.+|+|++|++++.+|+..|...+.
T Consensus 72 ~~~vi~~g~~~v~~~~~~~----~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~~----------------------- 119 (184)
T 2iyv_A 72 HDGVLSLGGGAVTSPGVRA----ALA-----GHTVVYLEISAAEGVRRTGGNTVRPL----------------------- 119 (184)
T ss_dssp CCSEEECCTTGGGSHHHHH----HHT-----TSCEEEEECCHHHHHHHTTCCCCCSS-----------------------
T ss_pred CCeEEecCCcEEcCHHHHH----HHc-----CCeEEEEeCCHHHHHHHHhCCCCCCC-----------------------
Confidence 123332 321 1111111 221 45899999999999999987742110
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
.. ..+..+ ++..+..... .+|.... .+.||++ .+++++++.|.+.+.
T Consensus 120 --~~-~~~~~~----~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 120 --LA-GPDRAE----KYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp --TT-SCCHHH----HHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred --cc-CCCHHH----HHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHHh
Confidence 00 112222 2232222111 2232212 2568887 899999999988764
No 43
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.62 E-value=4.5e-15 Score=117.03 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=100.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHH-----------H
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 98 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~ 98 (246)
++++|+|+|+|||||||+++.|++.+ |+.+++++... ..+..|..++..+..+..+...... .
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 68777653211 1344666777777665444433221 0
Q ss_pred HHHHHHcCCCCCcceEecCCCCCHH--H------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccc
Q 025937 99 IIDEAMKKPSCQKGFILDGFPRTEV--Q------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYH 170 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid~~~~~~~--~------~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~ 170 (246)
.+...+ ..+..+|+|+++.+.. + ...+.. +......||++|+|++|++++.+ +|..+
T Consensus 78 ~i~~~l---~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~-~~~~~~~~d~vi~l~~~~e~~~~---~R~~d-------- 142 (204)
T 2v54_A 78 FIQEQL---EQGITLIVDRYAFSGVAYAAAKGASMTLSKS-YESGLPKPDLVIFLESGSKEINR---NVGEE-------- 142 (204)
T ss_dssp HHHHHH---HTTCEEEEESCHHHHHHHHHHTTCCHHHHHH-HHTTSBCCSEEEEECCCHHHHTT---CCSSS--------
T ss_pred HHHHHH---HCCCEEEEECchhhHHHHHHccCCCHHHHHH-HhcCCCCCCEEEEEeCCHHHHHh---hcCcc--------
Confidence 111112 1234678898875421 1 122222 22223578999999999998877 33210
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 171 TKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 171 ~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+ ...+..++...+.... +. ....++.||++.+++++++.|.+.+.
T Consensus 143 ---------------------~~e--~~~~~~rl~~~y~~~~---~~--~~~~~~~Id~~~~~~~v~~~i~~~l~ 189 (204)
T 2v54_A 143 ---------------------IYE--DVTFQQKVLQEYKKMI---EE--GDIHWQIISSEFEEDVKKELIKNIVI 189 (204)
T ss_dssp ---------------------TTC--CSHHHHHHHHHHHHHH---TT--CSSCEEEECTTSCHHHHHHHHHHHHH
T ss_pred ---------------------ccc--HHHHHHHHHHHHHHHH---Hh--CCCcEEEEECCCCHHHHHHHHHHHHH
Confidence 001 1244555543222111 11 11357889999999999999988764
No 44
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.61 E-value=4.5e-15 Score=115.94 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=75.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
..++++|+|.|+|||||||+++.|++.+|+.+++.|.+...........+......+... ....+...+...+.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~--- 75 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT---AIMMLYHTAATILQ--- 75 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHH---HHHHHHHHHHHHHH---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHH---HHHHHHHHHHHHHh---
Confidence 356789999999999999999999999999999997664432221000001000000000 00111122222222
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+.++|+|++.........+.. +...+..++++|+|++|++++.+|+..|.
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 76 SGQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp TTCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 3567899988732222223322 33334567899999999999999998774
No 45
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.60 E-value=2.6e-14 Score=113.20 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=95.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcc--eee----hHHHHHHHHHccCchHHHHHHHHHcCC---CcCHHHH-----
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLA----TGDMLRAAVAAKTPLGIKAKEAMDKGE---LVSDDLV----- 96 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~--~i~----~~~l~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~----- 96 (246)
++++|+|.|+|||||||+++.|++.++.. ++. .++.+++. +..+. .......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~~~~ 68 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDI--------------IKEAKKKDLLTPLTFSLIHA 68 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHH--------------HHHHTTTSCCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHH--------------HhccccccCCCHHHHHHHHH
Confidence 35799999999999999999999999763 343 22333332 22111 0111100
Q ss_pred -------HHHHHHHHcCCCCCcceEecCCCCCHHHH--------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh-cCc
Q 025937 97 -------VGIIDEAMKKPSCQKGFILDGFPRTEVQA--------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRW 160 (246)
Q Consensus 97 -------~~~l~~~l~~~~~~~g~iid~~~~~~~~~--------~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~-~r~ 160 (246)
...+...+ ..+..+|+|+++.+.... ..+.. +......++++|+|++|++++.+|+. .|.
T Consensus 69 ~~r~~~~~~~i~~~l---~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 69 TDFSDRYERYILPML---KSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHHHHHHTHHHHH---HTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH---hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 01111122 124568889987543211 12222 22333568999999999999999998 664
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCccccCCC--CcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHH
Q 025937 161 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD--DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 238 (246)
Q Consensus 161 ~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~ 238 (246)
. .++ ++ .+.+ +..+.+ +..+.+..++..++..+ .... .++.||++.+++++++
T Consensus 145 ~---~~~-~~--------~g~~------~~~~~d~~e~~~~~~~r~~~~~~~~------~~~~-~~~~Id~~~~~e~v~~ 199 (213)
T 2plr_A 145 K---IKP-QE--------AGAD------IFPGLSPEEGFLKYQGLITEVYDKL------VKDE-NFIVIDGTKTPKEIQI 199 (213)
T ss_dssp C---CCT-TT--------TTTT------TCTTSCHHHHHHHHHHHHHHHHHHH------TTTT-TCEEEETTSCHHHHHH
T ss_pred c---ccc-cc--------cccc------cccccchhhhHHHHHHHHHHHHHHH------HhhC-CEEEEECCCCHHHHHH
Confidence 1 111 00 0000 000111 01124444444333221 1111 4688999999999999
Q ss_pred HHHHHhc
Q 025937 239 EVQKALS 245 (246)
Q Consensus 239 ~i~~~l~ 245 (246)
.|.+.+.
T Consensus 200 ~I~~~l~ 206 (213)
T 2plr_A 200 QIRKFVG 206 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 46
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.60 E-value=2.4e-14 Score=111.41 Aligned_cols=113 Identities=19% Similarity=0.375 Sum_probs=73.1
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH-cCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCc---CHHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE-YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV---SDDLVVGIIDEA 103 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~-~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~l~~~ 103 (246)
.+.++++|+|+|+|||||||+++.|++. +|++++++|+++++. .-...++.. +.. ..+ .++.....+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~ 79 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLLDFMEPI 79 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHHHHHHHH
Confidence 3556789999999999999999999999 799999999988863 111122221 111 112 233334444444
Q ss_pred HcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 104 l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+.. ..+++++..... .+.. ..++.+|+|++|.+++.+|+..|.
T Consensus 80 ~~~---~g~~vi~~~~~~---------~~~~--~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 80 MVS---RGNHVVDYHSSE---------LFPE--RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HTS---SSEEEEECSCCT---------TSCG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred Hhc---cCCEEEeCchHh---------hhhh--ccCCEEEEEECCHHHHHHHHHhCC
Confidence 321 346788765322 1111 125799999999999999999874
No 47
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.59 E-value=4.2e-14 Score=109.52 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=89.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCccee-ehHHHHHHHHHccCchHHHHHHHHHcCCCc----CH--HHHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMDKGELV----SD--DLVVGIIDE 102 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i-~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~----~~--~~~~~~l~~ 102 (246)
.++++|+|.|+|||||||+++.|++.++..++ +.+. .|..+.+.+..+... .. ..+...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 71 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence 35679999999999999999999999999888 4311 112222222211100 00 122333333
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCC
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 182 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~ 182 (246)
.+.. .+..+|+|+..........+...+...+..+ ..|+|++|++++.+|+..|..+
T Consensus 72 ~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~r-------------------- 128 (183)
T 2vli_A 72 ASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQP-------------------- 128 (183)
T ss_dssp HHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC-----------------------
T ss_pred HHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhcccc--------------------
Confidence 3321 1334667766555544444444454444444 6799999999999999887411
Q ss_pred CCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 183 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 183 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
+ ...+.++..+..+ .++ . + . . .||++ .+++++.+.|.+.+.
T Consensus 129 ----------~-~~~~~~~~~~~~~----~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 129 ----------Q-VNVGTVEDRLNEL----RGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVG 170 (183)
T ss_dssp ------------CCHHHHHHHHHHH----TSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHT
T ss_pred ----------c-hhHHHHHHHHHhh----ccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHH
Confidence 1 1123333322222 222 1 2 2 3 78887 899999999998875
No 48
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.59 E-value=9.4e-15 Score=111.88 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=66.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
...|+|+|+|||||||+++.|++++|+++++.|+++++... ..+.+.+.. |.....+.....+..... .
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~ 76 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG------LSVREIFEELGEDNFRMFEKNLIDELKT----L 76 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHTCHHHHHHHHHHHHHHHHT----C
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC------CCHHHHHHHhCHHHHHHHHHHHHHHHHh----c
Confidence 35899999999999999999999999999999988876431 112223322 211111222223333221 1
Q ss_pred cce-Eec-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 111 KGF-ILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 111 ~g~-iid-~--~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
..+ |+. | ++.. .. + ..++.+|+|++|++++.+|+..|
T Consensus 77 ~~~~Vi~~g~g~~~~-~~-------l----~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 77 KTPHVISTGGGIVMH-EN-------L----KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp SSCCEEECCGGGGGC-GG-------G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred CCCEEEECCCCEech-hH-------H----hcCCEEEEEECCHHHHHHHHhcc
Confidence 233 443 2 2211 10 1 23679999999999999999877
No 49
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.58 E-value=6.3e-15 Score=117.87 Aligned_cols=173 Identities=14% Similarity=0.076 Sum_probs=91.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHH---------
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV--------- 97 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------- 97 (246)
...++++|+|.|++||||||+++.|++.++. ..+++-.+.++ +.++++|..+++++.....+......
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~ 94 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRRE 94 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999998755 22221000111 23567788888877753324443221
Q ss_pred ---HHHHHHHcCCCCCcceEecCCCC------------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025937 98 ---GIIDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (246)
Q Consensus 98 ---~~l~~~l~~~~~~~g~iid~~~~------------~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 162 (246)
+.+...+ ..+..+|.|.|.. ..+....+...+.. +.||++|+|++|+++..+|+ ++..
T Consensus 95 ~~~~~I~paL---~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~--~~PDl~I~Ldv~~e~~~~Ri-~rdr- 167 (223)
T 3ld9_A 95 HFVKIIKPSL---MQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID--VYPDITFIIDVDINESLSRS-CKNG- 167 (223)
T ss_dssp HHHHTHHHHH---HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS--SCCSEEEEEECC--------------
T ss_pred HHHHHHHHHH---hcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc--CCCCeEEEEeCCHHHHHHHh-ccCc-
Confidence 1111122 1234456676532 12233333333322 78999999999999999998 3210
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHH
Q 025937 163 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 242 (246)
Q Consensus 163 ~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~ 242 (246)
| +.....+..++...+..+ .+.+ ...+++||+++++++| ++|.+
T Consensus 168 ------~------------------------E~~~~e~~~rv~~~y~~l---a~~~--~~~~~vIDa~~sieeV-~~I~~ 211 (223)
T 3ld9_A 168 ------Y------------------------EFADMEFYYRVRDGFYDI---AKKN--PHRCHVITDKSETYDI-DDINF 211 (223)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHH---HHHC--TTTEEEEESSCSSSCC-CHHHH
T ss_pred ------c------------------------ccchHHHHHHHHHHHHHH---HHHC--CCCEEEEcCCCCHHHH-HHHHH
Confidence 0 111123444443322221 2222 1368999999999999 98888
Q ss_pred Hhc
Q 025937 243 ALS 245 (246)
Q Consensus 243 ~l~ 245 (246)
.++
T Consensus 212 ~l~ 214 (223)
T 3ld9_A 212 VHL 214 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 50
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.58 E-value=7.2e-15 Score=122.92 Aligned_cols=125 Identities=16% Similarity=0.144 Sum_probs=81.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
+++|+|.|+|||||||+++.|++++ |+.+++.| .+++.+...+. |.. ..+...+.......+...+...+.....+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 5789999999999999999999985 99999997 55554432111 000 00000000001122233333333221345
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.++|+|+++....+...+.+.+...+. +..+|+|++|.+++.+|+..|.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTC-EEEEEECCCCHHHHHHHHHHCG
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHHhcc
Confidence 789999999888777777666555443 3489999999999999999885
No 51
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.58 E-value=8.7e-14 Score=109.98 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=92.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCC-----cC---------------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-----VS--------------- 92 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-----~~--------------- 92 (246)
++|+|+|++||||||+++.|++ +|+++++.|++.+....++......+...+..... +.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 99999999988776432222211222222211100 00
Q ss_pred ---H----HHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 93 ---D----DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 93 ---~----~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
. ..+...+.+.+... .+.++|+++. ...+.. + ...+|.+|+|++|++++.+|+..|.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~-~l~e~~--~-------~~~~d~vi~l~~~~e~~~~Rl~~R~----- 145 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQ-TAPYTLFVVP-LLIENK--L-------TALCDRILVVDVSPQTQLARSAQRD----- 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-CSSEEEEECT-TTTTTT--C-------GGGCSEEEEEECCHHHHHHHHC--------
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCEEEEEec-hhhhcC--c-------HhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 0 01111112223222 2346777763 211110 1 1245899999999999999998773
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChh----HHHHHHH
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ----EVTSEVQ 241 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----ev~~~i~ 241 (246)
..+.+.+..++... . +..+.+... . +.||++.+++ ++.++|.
T Consensus 146 ----------------------------~~~~e~~~~r~~~q---~-~~~~~~~~a-d-~vIdn~~~~~~~~~~~~~~i~ 191 (206)
T 1jjv_A 146 ----------------------------NNNFEQIQRIMNSQ---V-SQQERLKWA-D-DVINNDAELAQNLPHLQQKVL 191 (206)
T ss_dssp ------------------------------CHHHHHHHHHHS---C-CHHHHHHHC-S-EEEECCSCHHHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHhc---C-ChHHHHHhC-C-EEEECCCCccccHHHHHHHHH
Confidence 12456666666541 1 222233322 2 4678888999 9999998
Q ss_pred HHhc
Q 025937 242 KALS 245 (246)
Q Consensus 242 ~~l~ 245 (246)
+.+.
T Consensus 192 ~~~~ 195 (206)
T 1jjv_A 192 ELHQ 195 (206)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 52
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.58 E-value=2.8e-14 Score=113.85 Aligned_cols=164 Identities=17% Similarity=0.166 Sum_probs=96.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-----CCCcCHHHHH--------
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLVV-------- 97 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~-------- 97 (246)
++++|+|+|++||||||+++.|++ +|+++++.|++.+....++......+...+.. ...+....+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 568999999999999999999998 99999999988876443333333333333311 1112221111
Q ss_pred ----------HHHH----HHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCC
Q 025937 98 ----------GIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (246)
Q Consensus 98 ----------~~l~----~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~ 163 (246)
..+. ..+... ..++++.+.+...+.. + ...+|.+|+|++|++++.+|+..|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~--~-------~~~~d~vi~l~~~~e~~~~Rl~~R~--- 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS--L-------YKKANRVLVVDVSPETQLKRTMQRD--- 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTT--G-------GGGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccC--c-------cccCCEEEEEECCHHHHHHHHHHcC---
Confidence 1110 111111 2234443444322211 1 1347899999999999999998763
Q ss_pred CCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHH
Q 025937 164 SSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKA 243 (246)
Q Consensus 164 ~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~ 243 (246)
..+.+.+..++..... ...++... . +.||++.+++++.+.|.+.
T Consensus 148 ------------------------------~~~~~~~~~~~~~~~~----~~~~~~~a-d-~vId~~~~~~~~~~~I~~~ 191 (218)
T 1vht_A 148 ------------------------------DVTREHVEQILAAQAT----REARLAVA-D-DVIDNNGAPDAIASDVARL 191 (218)
T ss_dssp ------------------------------TCCHHHHHHHHHHSCC----HHHHHHHC-S-EEEECSSCTTSHHHHHHHH
T ss_pred ------------------------------CCCHHHHHHHHHhcCC----hHHHHHhC-C-EEEECCCCHHHHHHHHHHH
Confidence 1134555555554211 11222211 2 4678888999999999887
Q ss_pred hc
Q 025937 244 LS 245 (246)
Q Consensus 244 l~ 245 (246)
++
T Consensus 192 l~ 193 (218)
T 1vht_A 192 HA 193 (218)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 53
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.57 E-value=3e-14 Score=114.19 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=72.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHH----ccCchH--HHHHHHHH-----------------cC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPLG--IKAKEAMD-----------------KG 88 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~----~~~~~g--~~~~~~~~-----------------~~ 88 (246)
+++|+|+|++||||||+++.|++.+|+++++.|++.+.... .+..+. ..+..... .+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999886432 222221 11111111 11
Q ss_pred CCcCHH-----------------HHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHH
Q 025937 89 ELVSDD-----------------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV 151 (246)
Q Consensus 89 ~~~~~~-----------------~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~ 151 (246)
..+++. .+...+...........++++||..... .....++++|+|++++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-----------~~~~~~d~~i~l~~~~e~ 153 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-----------VVFPDAPVKIFLDASSEE 153 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-----------CCCTTCSEEEEEECCHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-----------eEecCCCEEEEEeCCHHH
Confidence 111111 1222222222223345789999873221 011457899999999999
Q ss_pred HHHHHh
Q 025937 152 LEERIT 157 (246)
Q Consensus 152 ~~~Rl~ 157 (246)
+.+|..
T Consensus 154 ~~~R~~ 159 (227)
T 1cke_A 154 RAHRRM 159 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999954
No 54
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.56 E-value=8.7e-15 Score=116.23 Aligned_cols=172 Identities=18% Similarity=0.144 Sum_probs=94.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHH-----------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG----------- 98 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------- 98 (246)
+++++|+|+|+|||||||+++.|++.++..+++++. +++ ...+++.+..+...+..+..++......
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998655444311 111 0112445566666666554454432211
Q ss_pred HHHHHHcCCCCCcceEecCCCCCH-H--------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccc
Q 025937 99 IIDEAMKKPSCQKGFILDGFPRTE-V--------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 169 (246)
Q Consensus 99 ~l~~~l~~~~~~~g~iid~~~~~~-~--------~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~ 169 (246)
.+...+ ..+..+|+|.+.... . ....+. .+......|+++|+|++|++++.+|+.+|. +
T Consensus 85 ~i~~~l---~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~------- 152 (215)
T 1nn5_A 85 LIKEKL---SQGVTLVVDRYAFSGVAFTGAKENFSLDWCK-QPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E------- 152 (215)
T ss_dssp HHHHHH---HTTCEEEEESCHHHHHHHHHTSTTCCHHHHH-GGGTTSBCCSEEEEEECCHHHHHHC------C-------
T ss_pred HHHHHH---HCCCEEEEeCCcccHHHHHhhcCCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c-------
Confidence 122222 123457778532100 0 011121 112222468999999999999999986331 0
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhh-cCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 170 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 170 ~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+ . ..+..++..... ++... ...++.||++.+++++++.|.+.+.
T Consensus 153 ----------------------~~~-~-~~~~~~~~~~~~------~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~ 199 (215)
T 1nn5_A 153 ----------------------RYE-N-GAFQERALRCFH------QLMKDTTLNWKMVDASKSIEAVHEDIRVLSE 199 (215)
T ss_dssp ----------------------TTC-S-HHHHHHHHHHHH------HHTTCTTSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ----------------------ccc-h-HHHHHHHHHHHH------HHHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 001 1 233333322111 11111 1357889999999999999988764
No 55
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.55 E-value=3.1e-14 Score=118.12 Aligned_cols=166 Identities=19% Similarity=0.145 Sum_probs=99.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-----CCcCHHH---------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDL--------- 95 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~--------- 95 (246)
.++++|+|+|++||||||+|+.|+ .+|++++++|++.+....++......+.+.+... +.+....
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 457799999999999999999999 5899999999988765544433333333322211 1111110
Q ss_pred -------------HHHHHHHHHcCC--CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 96 -------------VVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 96 -------------~~~~l~~~l~~~--~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
+...+...+... .....+|++|....... ....+|.+|+|++|++++.+|+..|.
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~----------~~~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG----------WQSMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT----------GGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc----------hHHhCCEEEEEcCCHHHHHHHHHHcC
Confidence 000111111110 11246888875321100 11246899999999999999998773
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHH
Q 025937 161 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240 (246)
Q Consensus 161 ~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i 240 (246)
..+.+.+..++... +. ..+++.. .. ++||++.+++++.++|
T Consensus 222 ---------------------------------g~s~e~~~~ri~~q---~~-~~~~~~~-AD-~vIdn~~s~eel~~~I 262 (281)
T 2f6r_A 222 ---------------------------------GLSEAAAQSRLQSQ---MS-GQQLVEQ-SN-VVLSTLWESHVTQSQV 262 (281)
T ss_dssp ---------------------------------CCCHHHHHHHHHTS---CC-HHHHHHT-CS-EEEECSSCHHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHHc---CC-hHhhHhh-CC-EEEECCCCHHHHHHHH
Confidence 11345555555443 21 2222222 23 4578888999999999
Q ss_pred HHHhc
Q 025937 241 QKALS 245 (246)
Q Consensus 241 ~~~l~ 245 (246)
.+.+.
T Consensus 263 ~~~l~ 267 (281)
T 2f6r_A 263 EKAWN 267 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 56
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.55 E-value=3.6e-13 Score=105.88 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=90.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehH----HHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHH---HHHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATG----DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---EAMK 105 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~----~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~l~ 105 (246)
++|+|.|++||||||+++.|++.++..++.-. .+++.. +......+.......+. ..+.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~r~~~~~ 66 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQY--------------YKDLKKTVFKMQIYMLTARSKQLK 66 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHH--------------TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHH--------------HhCccccchhHHHHHHHHHHHHHH
Confidence 47999999999999999999999998766421 111111 00000000000001111 1122
Q ss_pred CCCCCcceEecCCCCCHHH---------------HHHHHHHHH----hc------CCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 106 KPSCQKGFILDGFPRTEVQ---------------AQKLDEMLE----KQ------GKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~---------------~~~l~~~l~----~~------~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.......+|+|.++..... ...+..++. .. +..++.+|+|++|++++.+|+..|.
T Consensus 67 ~~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 146 (205)
T 2jaq_A 67 QAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG 146 (205)
T ss_dssp ------CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred HhhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 2212234888887654211 111112211 11 2578999999999999999998762
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHH
Q 025937 161 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240 (246)
Q Consensus 161 ~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i 240 (246)
. .+ ... .+ ..+..++..++.. ..+.|......+.||++.+++++++.|
T Consensus 147 r------~~--------------------~~~--~~-~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I 194 (205)
T 2jaq_A 147 R------SE--------------------ELL--IG-EEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELI 194 (205)
T ss_dssp C------HH--------------------HHH--SC-HHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHH
T ss_pred C------hh--------------------hhc--Cc-HHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHH
Confidence 1 00 000 01 1333444433332 334443223567899999999999999
Q ss_pred HHHhc
Q 025937 241 QKALS 245 (246)
Q Consensus 241 ~~~l~ 245 (246)
.+.+.
T Consensus 195 ~~~l~ 199 (205)
T 2jaq_A 195 MNKLN 199 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 57
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.55 E-value=2.2e-14 Score=117.76 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=99.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH---cCccee--ehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE---YCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~---~~~~~i--~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (246)
++++|+|.|+|||||||+++.|++. +|+.++ +.|.+ +..+......+... + .......+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~~---~-------~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEEF---I-------KKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHHH---H-------HHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHHH---H-------HHHHHHHHHHHhh
Confidence 4679999999999999999999998 688777 77544 33221111111110 0 1111223333332
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCC
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 185 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~ 185 (246)
. ..+|+|+.+........+....... ..++.+|+|++|++++.+|+..|..
T Consensus 72 ---~-~~vIiD~~~~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~~------------------------ 122 (260)
T 3a4m_A 72 ---N-YWVIVDDTNYYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERGE------------------------ 122 (260)
T ss_dssp ---T-SEEEECSCCCSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTTC------------------------
T ss_pred ---C-CEEEEeCCcccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCCC------------------------
Confidence 2 6789998877766666666554443 4567999999999999999988731
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCC--ChhHHHHHHHHHhc
Q 025937 186 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK--PPQEVTSEVQKALS 245 (246)
Q Consensus 186 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~ev~~~i~~~l~ 245 (246)
..+.+.++.....|..- . ..|.-....+.||++. +++++++.|.+.+.
T Consensus 123 --------~~~~~~l~~~~~~~e~~---~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 123 --------KIPNEVIKKMYEKFDEP---G-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp --------SSCHHHHHHHHHHCCCT---T-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred --------CCCHHHHHHHHHHhcCc---c-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 11233444333333211 1 1111012456788876 88999999987764
No 58
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.55 E-value=2.7e-14 Score=113.73 Aligned_cols=174 Identities=18% Similarity=0.134 Sum_probs=104.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCC-CcCHHHHH-----------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVV----------- 97 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~----------- 97 (246)
.++++|+|.|++||||||+++.|++.++....- +++ ...++++|..+++++.... ...+....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999863221 121 2246788999998888654 23332211
Q ss_pred HHHHHHHcCCCCCcceEecCCCCCHH--HH------HHHHHH--HHhcCCCcCEEEEE-ecCHHHHHHHHhcCcCCCCCC
Q 025937 98 GIIDEAMKKPSCQKGFILDGFPRTEV--QA------QKLDEM--LEKQGKKVDKVLNF-AIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 98 ~~l~~~l~~~~~~~g~iid~~~~~~~--~~------~~l~~~--l~~~~~~~~~vI~L-~~~~e~~~~Rl~~r~~~~~~g 166 (246)
..+..++ ..+..+|.|.|..... |. ..+.++ +...+..||++|+| ++|++++.+|+..+.
T Consensus 78 ~~I~paL---~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~------ 148 (216)
T 3tmk_A 78 DKIKKDL---LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD------ 148 (216)
T ss_dssp HHHHHHH---HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC------
T ss_pred HHHHHHH---HcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc------
Confidence 1111122 1234566677643211 11 011111 11234789999999 999999998865331
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHH-HHHHHhhcCcEEEEe-CCCChhHHHHHHHHHh
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP-VIDYYSKKGIVAQLH-AEKPPQEVTSEVQKAL 244 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~id-~~~~~~ev~~~i~~~l 244 (246)
+ |-+ . ..+..++...+..+.. ..+ + ....++.|| +++++++|++.|.+.+
T Consensus 149 d------------------------r~E-~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I~~~i 200 (216)
T 3tmk_A 149 E------------------------RYE-T-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALIWQIV 200 (216)
T ss_dssp C------------------------TTC-C-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred c------------------------ccc-H-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 0 011 1 3555555443333322 111 1 234789999 9999999999998876
Q ss_pred c
Q 025937 245 S 245 (246)
Q Consensus 245 ~ 245 (246)
.
T Consensus 201 ~ 201 (216)
T 3tmk_A 201 E 201 (216)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.55 E-value=4.7e-14 Score=111.21 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=93.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHH-------HHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL-------VVGIID 101 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~l~ 101 (246)
..++.+|+|+|++||||||+++.|+..+|..+++.+++...... .....+....+.. +...+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHHHH
Confidence 45677999999999999999999999999999998765321100 0111121221111 111222
Q ss_pred HHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCC
Q 025937 102 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 181 (246)
Q Consensus 102 ~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~ 181 (246)
..+. .+..+|+|.........+. +.... .+..+|+|++|++++.+|+.+|..++
T Consensus 96 ~~~~---~g~~viid~~~~~~~~~~~----l~~~~-~~~~vv~l~~~~e~l~~Rl~~R~~~~------------------ 149 (200)
T 4eun_A 96 ARAD---AGVSTIITCSALKRTYRDV----LREGP-PSVDFLHLDGPAEVIKGRMSKREGHF------------------ 149 (200)
T ss_dssp HHHH---TTCCEEEEECCCCHHHHHH----HTTSS-SCCEEEEEECCHHHHHHHHTTCSCCS------------------
T ss_pred HHHh---cCCCEEEEchhhhHHHHHH----HHHhC-CceEEEEEeCCHHHHHHHHHhcccCC------------------
Confidence 2221 2345777765444444333 22222 24488999999999999998875311
Q ss_pred CCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 182 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 182 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
...+.+...+..+ ...|.. ...+.||++.+++++.+.|.+.+.
T Consensus 150 -------------~~~~~l~~~~~~~-------~~~~~~-~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 150 -------------MPASLLQSQLATL-------EALEPD-ESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp -------------SCGGGHHHHHHHC-------CCCCTT-SCEEEEETTSCHHHHHHHHHHHHC
T ss_pred -------------CCHHHHHHHHHHh-------CCCCCC-CCeEEEECCCCHHHHHHHHHHHHH
Confidence 1112222222211 111221 135788999999999999998875
No 60
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.54 E-value=8.2e-13 Score=101.61 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=91.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHH-------HHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGIIDE 102 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~l~~ 102 (246)
.++.+|+|+|++||||||+++.|+..+|..+++.+++.... .+.. ...|..+.+. .+...+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFA 75 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHH
Confidence 45679999999999999999999999999999987763210 0000 0011111110 11112222
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcC-EEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCC
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 181 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~-~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~ 181 (246)
.+. .+..+|+|.......... .+...+ ++ .+|+|++|++++.+|+..|..+
T Consensus 76 ~~~---~~~~~vi~~~~~~~~~~~----~l~~~~--~~~~vv~l~~~~e~~~~R~~~R~~~------------------- 127 (175)
T 1knq_A 76 MQR---TNKVSLIVCSALKKHYRD----LLREGN--PNLSFIYLKGDFDVIESRLKARKGH------------------- 127 (175)
T ss_dssp HHH---HCSEEEEECCCCSHHHHH----HHHTTC--TTEEEEEEECCHHHHHHHHHTSTTC-------------------
T ss_pred HHh---cCCcEEEEeCchHHHHHH----HHHhcC--CCEEEEEEECCHHHHHHHHHhccCC-------------------
Confidence 111 134678874322223333 233322 34 7999999999999999987421
Q ss_pred CCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 182 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 182 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
......+...+..+. ++ +|.. ...+.||++.+++++.++|.+.+.
T Consensus 128 ------------~~~~~~~~~~~~~~~----~~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 128 ------------FFKTQMLVTQFETLQ----EP--GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp ------------CCCHHHHHHHHHHCC----CC--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred ------------CCchHHHHHHHHhhh----Cc--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 011233333222211 10 1221 135778999999999999998875
No 61
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.54 E-value=4.2e-14 Score=108.98 Aligned_cols=157 Identities=21% Similarity=0.224 Sum_probs=90.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcCCCCCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQK 111 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (246)
+.|+|.|+|||||||+++.|++.+|+++++.|++++.... .. +...+. .+..........++. .+. ...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~-~l~---~~~ 74 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QK----VSEIFEQKRENFFREQEQKMAD-FFS---SCE 74 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SC----HHHHHHHHCHHHHHHHHHHHHH-HHT---TCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CC----HHHHHHHcCHHHHHHHHHHHHH-HHH---ccC
Confidence 3799999999999999999999999999999888775321 11 111221 121111111122222 222 223
Q ss_pred ceEec-CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccc
Q 025937 112 GFILD-GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 190 (246)
Q Consensus 112 g~iid-~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~ 190 (246)
.+|++ |.+.... .. +. ..+.+|+|++|++++.+|+..|...
T Consensus 75 ~~vi~~g~~~~~~--~~----l~----~~~~~i~l~~~~e~~~~R~~~r~~~---------------------------- 116 (175)
T 1via_A 75 KACIATGGGFVNV--SN----LE----KAGFCIYLKADFEYLKKRLDKDEIS---------------------------- 116 (175)
T ss_dssp SEEEECCTTGGGS--TT----GG----GGCEEEEEECCHHHHTTCCCGGGTT----------------------------
T ss_pred CEEEECCCCEehh--hH----Hh----cCCEEEEEeCCHHHHHHHHhcccCC----------------------------
Confidence 45555 4332211 11 11 2368999999999999998766200
Q ss_pred cCCCC-cHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 191 QRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 191 ~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
.|+.. ..+.+...+.. ...+|... ..+.||++ .+++++++.|.+.+.
T Consensus 117 ~r~~~~~~~~i~~~~~~-------r~~~y~~~-~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 117 KRPLFYDEIKAKKLYNE-------RLSKYEQK-ANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp TSCTTCCHHHHHHHHHH-------HHHHHHHH-CSEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCCCcccHHHHHHHHHH-------HHHHHHhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 01111 13333332221 12233221 23678888 799999999998875
No 62
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.54 E-value=5.4e-14 Score=110.97 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=93.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcC-----CCcCHHHH-----------
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 96 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~----------- 96 (246)
++|+|+|++||||||+++.|++ +|+++++.|++.++....+......+...+... ..+....+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 999999999887764332222222232222111 01111111
Q ss_pred ---HHH--------HHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025937 97 ---VGI--------IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (246)
Q Consensus 97 ---~~~--------l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 165 (246)
..+ +...+........+|+|+....... ....++.+|+|++|++++.+|+..|..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~----------~~~~~~~~i~l~~~~e~~~~Rl~~R~~---- 146 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG----------TYKNYDKLIVVYAPYEVCKERAIKRGM---- 146 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT----------CGGGSSEEEEECCCHHHHHHHHHHTCC----
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC----------chhhCCEEEEEECCHHHHHHHHHHcCC----
Confidence 011 1111111111145777764211000 112368999999999999999987621
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 166 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 166 g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+.+..++... .. ...++.. .. +.||++.+++++.++|.+.+.
T Consensus 147 ------------------------------~~~~~~~~~~~~---~~-~~~~~~~-ad-~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 147 ------------------------------SEEDFERRWKKQ---MP-IEEKVKY-AD-YVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp ------------------------------CHHHHHHHHTTS---CC-HHHHGGG-CS-EECCCSSCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHhC---CC-hhHHHhc-CC-EEEECCCCHHHHHHHHHHHHH
Confidence 224444444432 11 1222222 23 468888999999999988774
No 63
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.53 E-value=2.5e-13 Score=107.34 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=106.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-----CCCcCHHHH--------
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLV-------- 96 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~-------- 96 (246)
+...-|.|+|.+||||||+++.|++ +|++++++|.+.++...++.+....+.+.+.. ++.+....+
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 3445799999999999999999998 99999999999988777666655555555542 223332111
Q ss_pred --------------HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025937 97 --------------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (246)
Q Consensus 97 --------------~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 162 (246)
.+.+.+.+... ....+++| .|.-.+... +. ..+|.+|++++|+++..+|+..|.
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~~~-~~~~vv~d-~pLL~E~~~-~~-------~~~D~vi~V~ap~e~r~~Rl~~Rd-- 153 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREARDA-QGPYVIFV-VPLLVESRN-WK-------ARCDRVLVVDCPVDTQIARVMQRN-- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-CSSSEEEE-CTTCTTCHH-HH-------HHCSEEEEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc-CCCEEEEE-EecccccCC-cc-------ccCCeEEEEECCHHHHHHHHHhcC--
Confidence 12222333322 12334555 344333111 11 136899999999999999999873
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHH
Q 025937 163 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQ 241 (246)
Q Consensus 163 ~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~ 241 (246)
..+.+.+..++... + +..+.... .. ++|+++ ++.+++.++|.
T Consensus 154 -------------------------------g~s~eea~~ri~~Q---~-~~eek~~~-AD-~VIdN~~gsle~l~~qV~ 196 (210)
T 4i1u_A 154 -------------------------------GFTREQVEAIIARQ---A-TREARLAA-AD-DVIVNDAATPDALAVQVD 196 (210)
T ss_dssp -------------------------------CCCHHHHHHHHHHS---C-CHHHHHHT-CS-EEEECSSCCHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHc---C-ChHHHHHh-CC-EEEECCCCCHHHHHHHHH
Confidence 33567777777642 2 22222222 22 457888 89999999998
Q ss_pred HHhc
Q 025937 242 KALS 245 (246)
Q Consensus 242 ~~l~ 245 (246)
+.++
T Consensus 197 ~l~~ 200 (210)
T 4i1u_A 197 ALHQ 200 (210)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.52 E-value=2.6e-13 Score=104.16 Aligned_cols=165 Identities=16% Similarity=0.263 Sum_probs=85.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
.+++|+|+|++||||||+++.|+..+++++++.++++++... ..++..++. .|..........++.. +.. .
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~---~ 73 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVINE-LTE---K 73 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHH-HHT---S
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHHH-HHh---C
Confidence 356899999999999999999999999999999888765321 122111110 0000000001122222 211 2
Q ss_pred cceEec---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCC
Q 025937 111 KGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187 (246)
Q Consensus 111 ~g~iid---~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 187 (246)
..+++. +.+........+.. ++++++|+++++++.+|+..|..++.
T Consensus 74 ~~~v~~~~~~~~~~~~~~~~l~~--------~~~~i~l~~~~~~l~~R~~~r~~r~~----------------------- 122 (173)
T 1kag_A 74 QGIVLATGGGSVKSRETRNRLSA--------RGVVVYLETTIEKQLARTQRDKKRPL----------------------- 122 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHHH--------HSEEEECCCCHHHHHSCC------CC-----------------------
T ss_pred CCeEEECCCeEEecHHHHHHHHh--------CCEEEEEeCCHHHHHHHHhCCCCCCC-----------------------
Confidence 345553 22222223332221 36899999999999999987642110
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCC-CChhHHHHHHHHHhc
Q 025937 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 245 (246)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~ev~~~i~~~l~ 245 (246)
....+...+.+...+.... + +|.... -+.||++ .++++++++|.+.+.
T Consensus 123 --~~~~~~~~~~~~~~~~~r~----~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 123 --LHVETPPREVLEALANERN----P---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp --SSSSCCCHHHHHHHHHHHH----H---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred --CCCCCchHHHHHHHHHHHH----H---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 1111111444444333221 2 222212 2567876 799999999998875
No 65
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.51 E-value=4.1e-13 Score=105.93 Aligned_cols=164 Identities=14% Similarity=0.086 Sum_probs=95.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc----cCch--HHHHHHHHH-----------------cCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA----KTPL--GIKAKEAMD-----------------KGE 89 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~----~~~~--g~~~~~~~~-----------------~~~ 89 (246)
++|+|.|++||||||+++.|++.+|+++++.+++.+..... +... ...+...+. .|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE 82 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence 38999999999999999999999999999998888764321 1110 011111111 111
Q ss_pred CcCH-----------------HHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHH
Q 025937 90 LVSD-----------------DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152 (246)
Q Consensus 90 ~~~~-----------------~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~ 152 (246)
.+.. ..+.+.+...+.... .++|++|.... ......++++|+|++|++++
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-----------~~~~~~~d~~i~l~a~~e~~ 149 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-----------TAVFPEAAHKFYLTASPEVR 149 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-----------CCCCTTCSEEEEEECCHHHH
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-----------EEEecCCcEEEEEECCHHHH
Confidence 1110 011112222221122 56778775322 00113468999999999999
Q ss_pred HHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCC-
Q 025937 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK- 231 (246)
Q Consensus 153 ~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~- 231 (246)
.+|+..|.. .+.+.+..++.......... +......+.||++.
T Consensus 150 ~~R~~~r~~---------------------------------~~~~~~~~~~~~R~~~~~~~---~~~~ad~~~Id~~~~ 193 (208)
T 3ake_A 150 AWRRARERP---------------------------------QAYEEVLRDLLRRDERDKAQ---SAPAPDALVLDTGGM 193 (208)
T ss_dssp HHHHHHTSS---------------------------------SCHHHHHHHHHHHHHTC--C---CCCCTTCEEEETTTS
T ss_pred HHHHHhhcc---------------------------------cCHHHHHHHHHHHHHHHhhc---ccCCCCEEEEECCCC
Confidence 999987631 23345555554322211100 02222346788885
Q ss_pred ChhHHHHHHHHHhc
Q 025937 232 PPQEVTSEVQKALS 245 (246)
Q Consensus 232 ~~~ev~~~i~~~l~ 245 (246)
+++++.+.|.+.++
T Consensus 194 ~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 194 TLDEVVAWVLAHIR 207 (208)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998775
No 66
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.50 E-value=2.3e-13 Score=110.83 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=68.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCC
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
+..|+|+|++||||||+++.|++.+|+.+++.+.+++.... +. .+...+.. |...........+...... .
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~----~i~~i~~~~ge~~fr~~e~~~l~~l~~~---~ 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GT----SVAEIFEHFGESVFREKETEALKKLSLM---Y 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TS----CHHHHHHHHCHHHHHHHHHHHHHHHHHH---C
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Cc----cHHHHHHHhCcHHHHHHHHHHHHHHHhh---c
Confidence 66999999999999999999999999999999988876431 11 12222222 2111112222223222211 0
Q ss_pred cceEe-c--CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 111 KGFIL-D--GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 111 ~g~ii-d--~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
.++|| + |.+........+ . .+.+|||++|.+++.+|+..+
T Consensus 120 ~~~Via~GgG~v~~~~~~~~l----~-----~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 120 HQVVVSTGGGAVIRPINWKYM----H-----KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp SSEEEECCGGGGGSHHHHHHH----T-----TSEEEEEECCHHHHHHHHHC-
T ss_pred CCcEEecCCCeecCHHHHHHH----h-----CCcEEEEECCHHHHHHHHhhc
Confidence 23444 3 333344444322 1 168999999999999999863
No 67
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.50 E-value=3.4e-13 Score=106.05 Aligned_cols=164 Identities=13% Similarity=0.055 Sum_probs=93.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHc---CCCcCHHHHHH-------
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK---GELVSDDLVVG------- 98 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~------- 98 (246)
+.++++|+|+|++||||||+++.|++. |+++++.|++.+... .+.. ..+...+.. .+.+....+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 456789999999999999999999998 999999998887654 2211 122221110 11222221110
Q ss_pred -----------HH-HHHHcCC-CC-CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 99 -----------II-DEAMKKP-SC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 99 -----------~l-~~~l~~~-~~-~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
.+ ...+... .. ...+|+++ +..... .+...++.+|+|+++++++.+|+..|..
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~---------~~~~~~d~~i~l~~~~e~~~~R~~~R~~--- 147 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK---------GWEGRLHGTLLVAAPLEERVRRVMARSG--- 147 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT---------TCGGGSSEEEEECCCHHHHHHHHHTTTC---
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc---------CchhhCCEEEEEECCHHHHHHHHHHcCC---
Confidence 00 0111111 12 34566665 321110 0112468999999999999999987621
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHh
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l 244 (246)
.+.+.+..++... .. ...++... . +.||++.+++++++.|.+.+
T Consensus 148 ------------------------------~~~~~~~~~i~~~---~~-~~~~~~~a-d-~vId~~~~~~~~~~~i~~~~ 191 (203)
T 1uf9_A 148 ------------------------------LSREEVLARERAQ---MP-EEEKRKRA-T-WVLENTGSLEDLERALKAVL 191 (203)
T ss_dssp ------------------------------CTTHHHHHHHTTS---CC-HHHHHHHC-S-EEECCSSHHHHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHC---CC-hhHHHHhC-C-EEEECCCCHHHHHHHHHHHH
Confidence 1123344444331 11 11112211 2 36888889999999998876
Q ss_pred c
Q 025937 245 S 245 (246)
Q Consensus 245 ~ 245 (246)
.
T Consensus 192 ~ 192 (203)
T 1uf9_A 192 A 192 (203)
T ss_dssp H
T ss_pred H
Confidence 4
No 68
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.49 E-value=7.2e-13 Score=102.43 Aligned_cols=110 Identities=24% Similarity=0.292 Sum_probs=70.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (246)
.++++|+|.|+|||||||+++.|++.+|+.+++.+++++.. ......+... .........+...+...+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--- 79 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE--- 79 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH---
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc---
Confidence 34568999999999999999999999999999999988764 1100010000 00112223333334333322
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 110 ~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.++|++...... +.. ..++.+|+|++|++++.+|+..|.
T Consensus 80 -g~~vv~~~~~~~---------~~~--~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 -GGVIVDYHGCDF---------FPE--RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp -CCEEEECSCCTT---------SCG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred -CCEEEEechhhh---------cch--hcCCEEEEEECCHHHHHHHHHHcC
Confidence 356776543221 000 126799999999999999998874
No 69
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.48 E-value=2.3e-14 Score=117.06 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=96.7
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc----------eeehHHHHHHHHHccCchHHHHHHHHHcCC--
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC----------HLATGDMLRAAVAAKTPLGIKAKEAMDKGE-- 89 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~----------~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-- 89 (246)
.++.+....++++|+|+|++||||||+|+.|++.+|+. ++++|++.+... ...+.. ...+.
T Consensus 12 ~~~~~~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~------~~~~~~-~~~g~~~ 84 (252)
T 1uj2_A 12 QNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT------SEQKAK-ALKGQFN 84 (252)
T ss_dssp ---------CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC------HHHHHH-HHTTCSC
T ss_pred HHhhhccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC------hhhhhh-hccCCCC
Confidence 33444445677899999999999999999999999987 789988765210 011111 11111
Q ss_pred -----CcCHHHHHHHHHHHHcC---------------------CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEE
Q 025937 90 -----LVSDDLVVGIIDEAMKK---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 143 (246)
Q Consensus 90 -----~~~~~~~~~~l~~~l~~---------------------~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI 143 (246)
.+....+...+...... ......+|++|....... .+.. .+|.+|
T Consensus 85 f~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~-------~~d~vi 155 (252)
T 1uj2_A 85 FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD-------LFQMKL 155 (252)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH-------HCSEEE
T ss_pred CCCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH-------hcCeeE
Confidence 12222233444333211 012357889986542111 1111 257999
Q ss_pred EEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHH---Hhh
Q 025937 144 NFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY---YSK 220 (246)
Q Consensus 144 ~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 220 (246)
+|+++++++.+|+..|.. ..+ ..+.+.+..++..... ....++ +..
T Consensus 156 ~l~~~~e~~~~R~~~R~~----------------------------~~r-g~~~e~i~~~~~~~~~--~~~~~~i~~~~~ 204 (252)
T 1uj2_A 156 FVDTDADTRLSRRVLRDI----------------------------SER-GRDLEQILSQYITFVK--PAFEEFCLPTKK 204 (252)
T ss_dssp EEECCHHHHHHHHHHHHH----------------------------HHS-CCCHHHHHHHHHHTHH--HHHHHHTGGGGG
T ss_pred EEeCCHHHHHHHHHHHHH----------------------------hhh-CCCHHHHHHHHHHhcc--HHHHHHhhhhhh
Confidence 999999999999987631 001 1244555555443111 011111 111
Q ss_pred cCcEE---EEeCCCChhHHHHHHHHHhc
Q 025937 221 KGIVA---QLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 221 ~~~~~---~id~~~~~~ev~~~i~~~l~ 245 (246)
...++ .||++.+++++++.|.+.+.
T Consensus 205 ~ad~vI~~~id~~~s~e~v~~~I~~~l~ 232 (252)
T 1uj2_A 205 YADVIIPRGADNLVAINLIVQHIQDILN 232 (252)
T ss_dssp GCSEEEETGGGCHHHHHHHHHHHHHHHH
T ss_pred cCcEEEecCCCChhHHHHHHHHHHHHHc
Confidence 12232 24888899999999988774
No 70
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.46 E-value=5.1e-14 Score=111.46 Aligned_cols=170 Identities=13% Similarity=0.095 Sum_probs=96.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc-CcceeehHHHHHHHHHccCchHHHHHHHHHcC---CCcCHHHHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG---ELVSDDLVVGIIDEAM 104 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~l 104 (246)
..++.+|+|+|++||||||+++.|++.+ ++.+++.|+++...-. -..+. ..+... ..+....+...+...+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~l 92 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE--IETDK---NGFLQYDVLEALNMEKMMSAISCWM 92 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG--SCBCT---TSCBCCSSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH--hhccc---cCCChhHHHHHhHHHHHHHHHHHHH
Confidence 3566799999999999999999999988 8999999876542100 00000 000000 0011112222222211
Q ss_pred cC------------CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcccccc
Q 025937 105 KK------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 172 (246)
Q Consensus 105 ~~------------~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~ 172 (246)
.. ......+|++|..... .+ .....+|.+|+++++++++.+|+..|....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~-------~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--------- 154 (207)
T 2qt1_A 93 ESARHSVVSTDQESAEEIPILIIEGFLLFN--YK-------PLDTIWNRSYFLTIPYEECKRRRSTRVYQP--------- 154 (207)
T ss_dssp HHHTTSSCCC-----CCCCEEEEECTTCTT--CG-------GGTTTCSEEEEEECCHHHHHHHHHHSCCSS---------
T ss_pred hCCCCCCcCCCeeecCCCCEEEEeehHHcC--cH-------HHHHhcCeeEEEECCHHHHHHHHHHcCCCc---------
Confidence 11 1123568889864321 11 112467899999999999999997763210
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhc-CcEEEEeCCCChhHHHHHHHHHhc
Q 025937 173 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 173 ~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
....+.+..+ +........+++... +.++.||++.++++++++|.+.++
T Consensus 155 ---------------------e~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 155 ---------------------PDSPGYFDGH---VWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp ---------------------CCCTTHHHHT---HHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred ---------------------cchHHHHHHH---HhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 0011122211 111112233344432 467789999999999999998875
No 71
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.41 E-value=1.1e-11 Score=97.79 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=90.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHHHHHHccCc--------hHHHHHHHHHcCCCcCHH----
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDD---- 94 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~---- 94 (246)
+..++++|+|+|||||||||+++.|++.++- ..+++..+.|+.. .+.. ....+...+..+..+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~-~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKR-EKETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN 86 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCC-TTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCC-CCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence 3567789999999999999999999998842 2222111111100 0000 001122222222221100
Q ss_pred ----HHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCC-cCEEEEEe-cCHHHHHHHHhcCcCCCCCCcc
Q 025937 95 ----LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFA-IDDAVLEERITGRWIHPSSGRT 168 (246)
Q Consensus 95 ----~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~-~~~vI~L~-~~~e~~~~Rl~~r~~~~~~g~~ 168 (246)
.....+...+. .+..+|+|..+... ..+ ...... -..+|+|+ +|.+++.+|+..|.
T Consensus 87 ~~~~~~~~~i~~~l~---~g~~vi~d~~~~~~---~~l----~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~-------- 148 (204)
T 2qor_A 87 NFYGTLKSEYDLAVG---EGKICLFEMNINGV---KQL----KESKHIQDGIYIFVKPPSIDILLGRLKNRN-------- 148 (204)
T ss_dssp EEEEEEHHHHHHHHH---TTCEEEEECCHHHH---HHH----HHCSSCSCCEEEEEECSCHHHHHHHHHTCT--------
T ss_pred CeecCCHHHHHHHHH---cCCeEEEEECHHHH---HHH----HHhcCCCCeEEEEEcCCCHHHHHHHHHHcC--------
Confidence 00112222332 25678888654332 222 222220 12889998 99999999998773
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 169 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 169 ~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.++.+.++.|+...+...... +.....++.+| + ++++++++|.+.|.
T Consensus 149 -------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~ 195 (204)
T 2qor_A 149 -------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLL 195 (204)
T ss_dssp -------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHH
Confidence 234577888877665433221 22222344444 4 89999999988764
No 72
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.41 E-value=2.2e-12 Score=104.17 Aligned_cols=43 Identities=35% Similarity=0.523 Sum_probs=38.0
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
...++.+|+|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 3567789999999999999999999999999999999988763
No 73
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.41 E-value=5.2e-12 Score=105.00 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=76.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc--CcceeehHHHHHHHHHccCchHHHHHHHHHcC----CCcCHHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG----ELVSDDLVVGIIDE 102 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~l~~ 102 (246)
..++.+|+|.|+|||||||+++.|++.+ ++.++|.|. ++..... .......+.... ...........+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 788899854 4321111 000000100000 00111112233333
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHH----HHHHhcCc
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL----EERITGRW 160 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~----~~Rl~~r~ 160 (246)
.+. .+..+|+|+......+...+.+.+...|... .+++|.+|++.+ .+|+..|.
T Consensus 106 ~l~---~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 106 LSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGYET-KMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTCEE-EEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHh---cCCeEEEECCCCCHHHHHHHHHHHHhCCCcE-EEEEEECCHHHHHHHHHHHHHHHH
Confidence 332 2456999998888776656655665555433 579999999999 88886653
No 74
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.41 E-value=1e-12 Score=104.70 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=36.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
+++|+|+|++||||||+++.|++.+|+.+++.|++.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 568999999999999999999999999999999988763
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.40 E-value=1.5e-11 Score=100.41 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=37.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
.++.+|.|.|++||||||+++.|++++|+.+++.+.+.+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 45679999999999999999999999999999999888653
No 76
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.40 E-value=2.7e-12 Score=99.77 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=66.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHH--HH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--ID 101 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--l~ 101 (246)
..++++|+|.|++||||||+++.|++.++ +.+++.+. ++..+.....+...-. ...+..+ +.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~r----------~~~~~~~~~~~ 78 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAGFTREER----------LRHLKRIAWIA 78 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCCCCHHHH----------HHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccCCChhhH----------HHHHHHHHHHH
Confidence 45678999999999999999999999884 34566644 3332221110000000 0011111 11
Q ss_pred HHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025937 102 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 102 ~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
..+. ..+..+++|++.........+...+...+ .++.+|+|++|++++.+|+.
T Consensus 79 ~~~~--~~g~~vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 79 RLLA--RNGVIVICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHH--TTTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred HHHH--hCCCEEEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence 1111 12233455766544444455555554443 57799999999999999974
No 77
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.40 E-value=4.2e-13 Score=110.18 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc-Cccee
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHL 61 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i 61 (246)
..++++|+|.|++||||||+++.|++.+ ++.++
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3567899999999999999999999999 66555
No 78
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.40 E-value=8.1e-12 Score=98.51 Aligned_cols=170 Identities=10% Similarity=0.055 Sum_probs=91.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCC-Cc------------CHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LV------------SDDLVVG 98 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~------------~~~~~~~ 98 (246)
.++|.|.|++||||||+++.||+++|+++++ +++++.......-.-..+...-.... .. ....+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI 84 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence 4689999999999999999999999999999 78876532110000000100000000 00 0000111
Q ss_pred HHHHHHcCCC--CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCC
Q 025937 99 IIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 176 (246)
Q Consensus 99 ~l~~~l~~~~--~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp 176 (246)
...+.+.... ...++|++|.... . ++.. ..-.+.|||++|++++.+|+..+.
T Consensus 85 ~~~~~i~~la~~~~~~~Vi~Gr~g~-----~---vl~~--~~~~~~V~L~A~~e~r~~R~~~~~---------------- 138 (201)
T 3fdi_A 85 RQFNFIRKKANEEKESFVIVGRCAE-----E---ILSD--NPNMISAFILGDKDTKTKRVMERE---------------- 138 (201)
T ss_dssp HHHHHHHHHHHTSCCCEEEESTTHH-----H---HTTT--CTTEEEEEEEECHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHhhcCCCEEEEECCcc-----h---hcCC--CCCeEEEEEECCHHHHHHHHHHHh----------------
Confidence 2222222222 2346788765311 1 1111 112489999999999999997652
Q ss_pred CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHH-h-----hcCcEEEEeC-CCChhHHHHHHHHHhc
Q 025937 177 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYY-S-----KKGIVAQLHA-EKPPQEVTSEVQKALS 245 (246)
Q Consensus 177 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~id~-~~~~~ev~~~i~~~l~ 245 (246)
+.+.+....++......-....+.| . ....=+.||+ ..+++++++.|.+.++
T Consensus 139 -----------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 139 -----------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1123444444444333333333333 1 0011145665 4799999999998875
No 79
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.38 E-value=1.5e-11 Score=98.41 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~ 72 (246)
..++|.|.|++||||||+++.||+++|+++++ .++++....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 45799999999999999999999999999999 577776544
No 80
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.35 E-value=1.7e-12 Score=103.01 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=65.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC------cceeehHHHHHHHHHccCchH-HHHHHHHHcCCCcCHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIID 101 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~------~~~i~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~ 101 (246)
..++++|+|.|++||||||+++.|++.++ +.+++.+. ++..+.....+. ..-...+ ..+...+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~ 92 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAK 92 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHH
Confidence 45678999999999999999999999886 77777643 333221110000 0000000 00111122
Q ss_pred HHHcCCCCCcceEecCCCCC-HHHHHHHHHHHHh-----cCCCcCEEEEEecCHHHHHHHH
Q 025937 102 EAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 102 ~~l~~~~~~~g~iid~~~~~-~~~~~~l~~~l~~-----~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
..+. .+..+|+| +... ......+.++... ....|+++|+|++|++++.+|+
T Consensus 93 ~~l~---~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 93 LFAD---SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHH---CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 2222 23456667 5432 2334444444331 1236789999999999999995
No 81
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.33 E-value=9.8e-12 Score=97.27 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=39.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~ 73 (246)
+.-++|.|+|++||||||+++.|++.+|++++++|++.++...+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 44579999999999999999999999999999999998886553
No 82
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.31 E-value=2.6e-12 Score=104.92 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC--cceeehHHHHHHHHHc----cCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAA----KTPLGIKAKEAMDKGELVSDDLVVGIIDE 102 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~~~l~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 102 (246)
..++.+|+|.|+|||||||+++.|++.++ +.+++.|. ++..+.. ....|..+...+.. .....+..++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence 45678999999999999999999999996 55667644 3331110 00111111111110 001111222222
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+. .+..+|+|+++....+...+.+.+...|..+ .++++++|++++.+|+..|.
T Consensus 105 ~~~---~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 105 LSS---LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHH---TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHHH
T ss_pred HHh---cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHHH
Confidence 222 2357999999988877777777777666554 56788999999999998774
No 83
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.29 E-value=4.6e-12 Score=110.66 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=79.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (246)
...+.+|+|+|+|||||||+++.|++.+++.+++.|++ + . ...+...+...+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~----------------~~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------S----------------WQRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------S----------------HHHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------H----------------HHHHHHHHHHHHh---
Confidence 45678999999999999999999999999999999764 1 0 0111222223332
Q ss_pred CCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025937 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (246)
Q Consensus 109 ~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 161 (246)
.+..+|+|+......+...+.+++...+..+ .+|+|+++.+++.+|+..|..
T Consensus 308 ~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~-~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 308 QGKRVVIDNTNPDVPSRARYIQCAKDAGVPC-RCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHHHHHTCCE-EEEEECCCHHHHHHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEEeCCHHHHHHHHHhhcc
Confidence 2456899999888888877777776666555 889999999999999998853
No 84
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.28 E-value=7e-12 Score=100.86 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=40.3
Q ss_pred cCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHH
Q 025937 135 QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 214 (246)
Q Consensus 135 ~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 214 (246)
.+..||++|+|++|++++.+|+..|.. .. .......+.+++..++..+.
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r------~~-----------------------e~~~~~~~~~rv~~~~~~~~-- 191 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRAR------SE-----------------------ESCVPLKYLQELHELHEDWL-- 191 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHCC------GG-----------------------GTTCCHHHHHHHHHHHHHHH--
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcCC------cc-----------------------cccCcHHHHHHHHHHHHHHH--
Confidence 467899999999999999999976621 00 00011245555554444331
Q ss_pred HHHH-hhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 215 IDYY-SKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 215 ~~~~-~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
..++ .....++.||+++++++|+++|.+.++
T Consensus 192 ~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSES 223 (230)
T ss_dssp TSCCSSCCCEEEEEECCC--------------
T ss_pred HHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 1111 223468899999999999999988764
No 85
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.28 E-value=7.3e-11 Score=90.70 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=64.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHHHHHHcc--CchHHHHHHHHHcCCC-cCH---HHH---HHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAK--TPLGIKAKEAMDKGEL-VSD---DLV---VGII 100 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~~~~~~~--~~~g~~~~~~~~~~~~-~~~---~~~---~~~l 100 (246)
+++|+|.|+|||||||+++.|++.++..++ +.|++........ ...|..+.. .+.. ... ... ...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA---DGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECT---TSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccC---CCccccchhHHHHHHHHHHHH
Confidence 568999999999999999999999986555 5766554311110 000000000 0000 000 001 1112
Q ss_pred HHHHcCCCCCcceEecCCCC-CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 101 DEAMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 101 ~~~l~~~~~~~g~iid~~~~-~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.... ..+..+|+++... .......+.+.+. ..+..+|+|++|.+++.+|+..|.
T Consensus 80 ~~~~---~~g~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 VAMA---RAGARIIIDDVFLGGAAAQERWRSFVG---DLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHH---HTTCEEEEEECCTTTHHHHHHHHHHHT---TCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHH---hcCCeEEEEeccccChHHHHHHHHHhc---CCcEEEEEEECCHHHHHHHHHhhC
Confidence 2221 1234578887542 2232333333332 223368899999999999998774
No 86
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.27 E-value=1.7e-10 Score=92.67 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=36.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~ 70 (246)
..+++|+|.||+||||||+++.|++.+|+.+++.+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 45679999999999999999999999999999999887763
No 87
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.27 E-value=2.7e-11 Score=93.50 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=63.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc---CcceeehH-HHHHHHHHccCchH-HHHHHHHHcCCCcCHHHHHHHH--HH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGII--DE 102 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~-~l~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l--~~ 102 (246)
.++.+|+|+|++||||||+++.|++.+ |++++.++ +.++..+.....+. ..- ...+.++. ..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 71 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDR-----------EENVRRIAEVAK 71 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHH-----------HHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccH-----------HHHHHHHHHHHH
Confidence 567899999999999999999999988 87766443 33333111100000 000 11111111 11
Q ss_pred HHcCCCCCcceEecCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025937 103 AMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~-~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r 159 (246)
.+.. .+ .+++.++... ......+.+++...+ .|+.+|+|++|++++.+|+.++
T Consensus 72 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 72 LFAD--AG-LVCITSFISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHH--TT-CEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHH--CC-CEEEEecCCcchHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHHHhhh
Confidence 1211 11 2344444322 222333333333333 6789999999999999998653
No 88
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.18 E-value=1e-09 Score=88.63 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc-Ccc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CLC 59 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~-~~~ 59 (246)
++++|+|.|++||||||+++.|++.+ ++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 46899999999999999999999999 543
No 89
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.18 E-value=3.4e-11 Score=107.86 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCc-----ceeehHHHHHHHHHccCchHHHHHHHHHcCCC----cCHHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII 100 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~-----~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l 100 (246)
..+.+|+|.|+|||||||+++.|++.+++ .+++.|++.+.. ....... .++..... .........+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~----~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSY----NFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCG----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccc----cccCcccHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999854 346888765543 3221000 01110000 0001111112
Q ss_pred HHHHcCC--CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCc
Q 025937 101 DEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRW 160 (246)
Q Consensus 101 ~~~l~~~--~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~ 160 (246)
......+ ..+..+|+|+..........+.+.+...+..+ ++|++.|+ ++.+.+|+..|.
T Consensus 108 ~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v-~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 108 RDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKA-FFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEE-EEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeE-EEEEEeCChHHHHHHHHHhhh
Confidence 2111111 23567999999998888887777776655433 56777777 778888886654
No 90
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.13 E-value=1.8e-09 Score=84.75 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=61.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc---Ccc--eeehHHHHHHHHHccCchH-HHHHHHHHcCCCcCHHHHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---CLC--HLATGDMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIIDE 102 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~---~~~--~i~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~ 102 (246)
..++.+|+|.|++||||||+++.|+..+ |.. +++.+++.. .+.....+. ......+ ..+.... .
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~-~ 91 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENI--------RRVGEVA-K 91 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHH--------HHHHHHH-H
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHH--------HHHHHHH-H
Confidence 5677899999999999999999999998 655 788755432 111110000 0000000 0001111 1
Q ss_pred HHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 103 ~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
.+. ..+...+.+...........+...+. ...-.+|||++|.+++.+|+
T Consensus 92 ~~~--~~~~~vi~~~~~~~~~~r~~~~~~~~---~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 92 LFA--DAGIICIASLISPYRTDRDACRSLLP---EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHH--HTTCEEEEECCCCCHHHHHHHHHTSC---TTSEEEEEECCCHHHHHHHC
T ss_pred HHH--hCCceEEEecCCchHHHHHHHHHhcC---CCCEEEEEEeCCHHHHHHhc
Confidence 111 12334555544334444444433221 11236799999999999997
No 91
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.08 E-value=5.3e-10 Score=101.51 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=65.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc---CcceeehH-HHHHHHHHccCchH-HHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIIDEAM 104 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~---~~~~i~~~-~l~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (246)
.++++|+|+|+|||||||+++.|++.+ |+.++.++ +.++..+.....+. ..-.+.+. .+..++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHH
Confidence 378899999999999999999999999 88776653 55554222111111 00001110 0111111111
Q ss_pred cCCCCCcceEecCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025937 105 KKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (246)
Q Consensus 105 ~~~~~~~g~iid~~~~~-~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 158 (246)
. .+. +++.++... ......+.+++... ..++++|+|++|.+++.+|+.+
T Consensus 122 ~---~G~-iVI~d~~s~~~~~r~~~r~ll~~~-g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 122 D---AGL-VCITSFISPYTQDRNNARQIHEGA-SLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp H---TTC-EEEEECCCCCHHHHHHHHHHHHTT-TCCEEEEEEECCHHHHHHHCTT
T ss_pred h---CCC-EEEEeCchhhHHHHHHHHHHHHhC-CCCeEEEEEECCHHHHHHHhcc
Confidence 1 122 333333322 22344444444433 3466999999999999999863
No 92
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.04 E-value=4.3e-10 Score=87.30 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=92.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC-cceeehHHHHHHHHHccCc--------hHHHHHHHHHcCCCcCHHH--------H
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDDL--------V 96 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~-~~~i~~~~l~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~--------~ 96 (246)
.|+|+||+||||||+++.|.+.+. ...+++...-|. +.++.. .-..+..++.+|..+.... .
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 489999999999999999998874 233333222222 111111 1245666666665533211 0
Q ss_pred HHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccccCCCC
Q 025937 97 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 176 (246)
Q Consensus 97 ~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~~~~pp 176 (246)
...+...+. .+..+|++.-+....+ +.+ ..+..+..++.+..+.+++.+|+.+|.
T Consensus 82 ~~~v~~~l~---~g~~vil~id~~g~~~---~k~---~~~~~~~~Ifi~pps~e~L~~RL~~Rg---------------- 136 (186)
T 1ex7_A 82 VASVKQVSK---SGKTCILDIDMQGVKS---VKA---IPELNARFLFIAPPSVEDLKKRLEGRG---------------- 136 (186)
T ss_dssp HHHHHHHHH---HTSEEEEECCHHHHHH---HHT---CGGGCCEEEEEECSCHHHHHHHHHHHC----------------
T ss_pred cceeeehhh---CCCEEEecCCHHHHHH---HHH---hcccCceEEEEeCCCHHHHHHHHHhcC----------------
Confidence 122222221 1345677654322222 211 112244345556667899999999874
Q ss_pred CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 177 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 177 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
.++.+.++.|+.....+... +....-.++.+|. +.++.+++|.++|.
T Consensus 137 -----------------~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvNd--dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 137 -----------------TETEESINKRLSAAQAELAY---AETGAHDKVIVND--DLDKAYKELKDFIF 183 (186)
T ss_dssp -----------------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEECS--SHHHHHHHHHHHHT
T ss_pred -----------------CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEECc--CHHHHHHHHHHHHH
Confidence 45678999999876654321 1111113556663 68999999988874
No 93
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.03 E-value=5e-10 Score=100.77 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=73.0
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc-----ceeehHHHHHHHHHccCchHHHHHHHHHcCC
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 89 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~-----~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 89 (246)
.++..+.+.++....+.+.+|+|+|++||||||+++.|++.++. .+++. |.+++.+.....+...-+...
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~---- 429 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN---- 429 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH----
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH----
Confidence 34555555555323456789999999999999999999999863 66776 445554332211111000000
Q ss_pred CcCHHHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcC-EEEEEecCHHHHHHHHh
Q 025937 90 LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERIT 157 (246)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~-~vI~L~~~~e~~~~Rl~ 157 (246)
-..+...+...+ ..+.++|+|...........+.+.+ ..++ .+|+|++|.+++.+|+.
T Consensus 430 ---l~~i~~~~~~~l---~~G~~VI~d~~~~~~~~r~~~~~~l----~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 430 ---ILRVGFVASEIV---KHNGVVICALVSPYRSARNQVRNMM----EEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp ---HHHHHHHHHHHH---HTTCEEEEECCCCCHHHHHHHHTTS----CTTCEEEEEEECCGGGHHHHCC
T ss_pred ---HHHHHHHHHHHH---hCCCEEEEEcCCCCHHHHHHHHHHh----hcCCEEEEEEeCCHHHHHHHhh
Confidence 000111222222 2345788886443333333332222 1246 89999999999999975
No 94
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.00 E-value=1e-09 Score=86.73 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.++.+|+|.||+||||||+++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5677999999999999999999999874
No 95
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.98 E-value=6.4e-11 Score=93.71 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
++|+|.|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999853
No 96
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.97 E-value=1.9e-09 Score=97.58 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC------cceeehHHHHHHHHHccCchHHHHH-HHHHcCCCcCHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAK-EAMDKGELVSDDLVVGII 100 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~------~~~i~~~~l~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~l 100 (246)
..+.+++|+|+|+|||||||+++.|+++++ +.+++. +.++..+.....+...-+ ..+ ..+...+
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~ 462 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVA 462 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHH
Confidence 356778999999999999999999999986 245565 455553321111100000 000 0011122
Q ss_pred HHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025937 101 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 101 ~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
..... .+..+|.+...........+.+.+...+ +..+|||++|.+++.+|..
T Consensus 463 ~~~~~---~g~~VI~~~is~~~~~R~~~r~l~~~~g--~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 463 TELTR---AGAAVIAAPIAPYEESRKFARDAVSQAG--SFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHHH---TTCEEEEECCCCCHHHHHHHHHHHHTTS--EEEEEEECCCHHHHHHHCS
T ss_pred HHHHh---CCCEEEEEcCCCcHHHHHHHHHHHHhcC--CeEEEEEeCCHHHHHHHhc
Confidence 22221 1233444433222333344444444322 4589999999999999953
No 97
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.94 E-value=7.3e-09 Score=81.18 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.++.+++|+||+||||||+++.|+..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567999999999999999999998764
No 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.88 E-value=3.8e-09 Score=82.87 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|+|++||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999999876
No 99
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.88 E-value=2.7e-09 Score=86.99 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=68.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHH-HHHH--ccCchHHHH---HHHHHcC-----CCcCHHHHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLR-AAVA--AKTPLGIKA---KEAMDKG-----ELVSDDLVVGIID 101 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~-~~~~--~~~~~g~~~---~~~~~~~-----~~~~~~~~~~~l~ 101 (246)
++|+|+||+||||||+++.|++.++..+++.|++.. ..+. ...+..... ...+..- ..+......+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 478999999999999999999999999999977531 1000 000000000 0000000 0123333333344
Q ss_pred HHHcCCCCCcceEecCCCCCHHHHHHHHHHHHh----cCCCcCEEEEEecCH-HHHHHHHhcCc
Q 025937 102 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK----QGKKVDKVLNFAIDD-AVLEERITGRW 160 (246)
Q Consensus 102 ~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~----~~~~~~~vI~L~~~~-e~~~~Rl~~r~ 160 (246)
..+.....+..+|+++... . .+...+.. .+..+ .+|+|++|. +++.+|+.+|.
T Consensus 82 ~~i~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~-~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQW-HVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHHTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEE-EEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccHH--H---HHHHHHhcccccccCce-EEEEecchhHHHHHHHHHHHH
Confidence 4442223345677765322 1 23333332 22222 789999997 99999998874
No 100
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.80 E-value=5.7e-08 Score=75.22 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=63.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHHHHHHcc-CchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAK-TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (246)
.+++|.||+||||||+++.|+..++. .+++.+++... ...+ ........... .+ .+.+......... ..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~----~~-~~~l~~~~~~~~~---~~ 73 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGGYRPPWESDELLA----LT-WKNITDLTVNFLL---AQ 73 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHH----HH-HHHHHHHHHHHHH---TT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hccccccCccchhHHH----HH-HHHHHHHHHHHHh---cC
Confidence 57899999999999999999998865 77887665332 1000 00000000000 00 0011111111111 12
Q ss_pred cceEecCCCCCHHHHHHHHHHHHhcCCC-cCEEEEEecCHHHHHHHHhcCc
Q 025937 111 KGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 111 ~g~iid~~~~~~~~~~~l~~~l~~~~~~-~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
..+|++++. .....+.+.+.+.+.+.. ...+++|.++.+.+.+|...|.
T Consensus 74 ~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 74 NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 357888753 333333333333222222 2257889999999999998875
No 101
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.78 E-value=3.5e-08 Score=83.19 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
.++++|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34689999999999999999999999853
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.78 E-value=1.1e-07 Score=73.66 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+++|+||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997753
No 103
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.77 E-value=1.1e-07 Score=74.25 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHHHHHHHHccC-----c----------hHHHHH----HHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKT-----P----------LGIKAK----EAMD 86 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l~~~~~~~~~-----~----------~g~~~~----~~~~ 86 (246)
..++++|+|+|.|||||+|++..+.+.+| +..+++++.+++...... . .+..+. +...
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ 87 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence 34778999999999999999999999885 778999999985332110 0 011111 0000
Q ss_pred cCCCcCHHHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025937 87 KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (246)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 156 (246)
.+. ..+.++. +... ....+||+|. +.....+++.+.+ +..+ .+|.+.+++++..+|.
T Consensus 88 ~d~----~~~~~~~---~~~~-~~~~vII~dv-R~~~Ev~~fr~~~---g~~~-~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 88 ADP----GFFCRKI---VEGI-SQPIWLVSDT-RRVSDIQWFREAY---GAVT-QTVRVVALEQSRQQRG 144 (202)
T ss_dssp HCT----TTTHHHH---SBTC-CCSEEEECCC-CSHHHHHHHHHHH---GGGE-EEEEEEECHHHHHHTT
T ss_pred cCc----hHHHHHH---HHhc-CCCcEEEeCC-CCHHHHHHHHHhC---CCcE-EEEEEECCHHHHHHHh
Confidence 110 0111111 1111 2246888886 7777888776653 2123 6899999999999993
No 104
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.75 E-value=1.2e-07 Score=83.84 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHHHHHHcc-C------chHHHHHHHHHcCCCcCHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAK-T------PLGIKAKEAMDKGELVSDDLV 96 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~~~~~~~-~------~~g~~~~~~~~~~~~~~~~~~ 96 (246)
..++.+|+|.|.|||||||+++.|++.++ ...++.+++.+. .... . ..|....... ..+.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~~ifd~~g~~~~r~r-------e~~~ 107 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSFEFFLPDNEEGLKIR-------KQCA 107 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCGGGGCTTCHHHHHHH-------HHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCcccccCCCCHHHHHHH-------HHHH
Confidence 45678999999999999999999999875 355667665444 2221 1 0111000000 0111
Q ss_pred HHHH---HHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe---cCHHHHHHHHhcC
Q 025937 97 VGII---DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA---IDDAVLEERITGR 159 (246)
Q Consensus 97 ~~~l---~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~---~~~e~~~~Rl~~r 159 (246)
...+ ...+.. ..+.++|+|.........+.+.+.+.+.+. .+++|+ .+++.+..|+..+
T Consensus 108 ~~~l~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 108 LAALNDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHh
Confidence 1122 222211 234579999988888888777766665543 345666 4578888888754
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.72 E-value=7.3e-08 Score=75.87 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=32.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC--cceeehHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDML 67 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~~~l~ 67 (246)
+.++.+|.|.|++||||||+++.|+..++ +.+++.+..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 45677999999999999999999999988 8888776543
No 106
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.71 E-value=1.9e-07 Score=77.24 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 104 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (246)
+...+++|+|.|..||||+|+++.|.+.++ +.++.+.. +.+.... +. .+....
T Consensus 82 ~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~----------Pt~eE~~------~~--------yl~R~~ 137 (304)
T 3czq_A 82 ATGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTK----------PTETERG------QW--------YFQRYV 137 (304)
T ss_dssp HHCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCS----------CCHHHHT------SC--------TTHHHH
T ss_pred HcCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC----------cChHHHh------ch--------HHHHHH
Confidence 345689999999999999999999999995 33333311 1111111 11 111122
Q ss_pred cCC-CCCcceEecCCCC------------CHH-------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025937 105 KKP-SCQKGFILDGFPR------------TEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (246)
Q Consensus 105 ~~~-~~~~g~iid~~~~------------~~~-------~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 164 (246)
..+ ..+..+|.|.+-- ... +...+++.+...| .|++.+||++|+++..+|+..|..+|.
T Consensus 138 ~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~dp~ 216 (304)
T 3czq_A 138 ATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRHDPL 216 (304)
T ss_dssp TTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHHCTT
T ss_pred HhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhcCcc
Confidence 223 2334455554321 111 1122223344444 788999999999999999987754331
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhcHHHHHHHh-hcCcEEEEeCCCCh---hHHHH
Q 025937 165 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYS-KKGIVAQLHAEKPP---QEVTS 238 (246)
Q Consensus 165 ~g~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---~ev~~ 238 (246)
. +=..+...++ .....|......+...-. ....+++|+++... ..+.+
T Consensus 217 k--------------------------~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~ 270 (304)
T 3czq_A 217 K--------------------------IWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIR 270 (304)
T ss_dssp T--------------------------GGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHH
T ss_pred c--------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHH
Confidence 1 0012333333 223555555544444332 23478999998754 45666
Q ss_pred HHHHHh
Q 025937 239 EVQKAL 244 (246)
Q Consensus 239 ~i~~~l 244 (246)
.|.+.|
T Consensus 271 ~Il~~l 276 (304)
T 3czq_A 271 HMLTKL 276 (304)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666555
No 107
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.60 E-value=4.9e-07 Score=72.26 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=18.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHH-hHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIK-DEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La-~~~ 56 (246)
..++.+++|+||+||||||+++.|+ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3556799999999999999999999 655
No 108
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.58 E-value=3e-07 Score=82.72 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC------cceeehHHHHHHHHHccCchHH-HHHHHHHcC
Q 025937 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGI-KAKEAMDKG 88 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~------~~~i~~~~l~~~~~~~~~~~g~-~~~~~~~~~ 88 (246)
+..+..+..+.....++.+|+|+|++||||||+++.|+..++ +.+++.+++... +...-.+.. .....+
T Consensus 353 eV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~--- 428 (552)
T 3cr8_A 353 EVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNV--- 428 (552)
T ss_dssp HHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHH---
T ss_pred chhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHH---
Confidence 444444444422235678999999999999999999999984 445777555432 111100000 000000
Q ss_pred CCcCHHHHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025937 89 ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (246)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 157 (246)
..+..+.+. +.. .....+..+........+...+++...+ .+ .+|+|++|.+++.+|..
T Consensus 429 -----r~i~~v~q~-l~~--~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f-~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 429 -----RRIGFVASE-ITK--NRGIAICAPIAPYRQTRRDVRAMIEAVG-GF-VEIHVATPIETCESRDR 487 (552)
T ss_dssp -----HHHHHHHHH-HHH--TTCEEEECCCCCCHHHHHHHHHHHHTTS-EE-EEEEECC----------
T ss_pred -----HHHHHHHHH-HHh--cCCEEEEecCCccHHHHHHHHHHHHHcC-CE-EEEEEcCCHHHHHHhcc
Confidence 001111111 111 1223333332222333444455555544 23 78999999999999964
No 109
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.55 E-value=7.5e-08 Score=75.50 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhc-CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMKC-ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+....+.+++.. ...++.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555543 35677899999999999999999999875
No 110
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.44 E-value=8.1e-06 Score=65.77 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=27.4
Q ss_pred HHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 23 ~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+-++..-.++.+|.|.||+||||||+++.|+..+|..
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3333345677899999999999999999999988865
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.38 E-value=3e-05 Score=61.44 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=24.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+.+++.+++|+||+||||||+.+.|+..+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346677999999999999999999998764
No 112
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.37 E-value=3.6e-06 Score=71.03 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCCCChhHHH-HHHHhHcCc
Q 025937 30 KPDKRLILVGPPGSGKGTQS-PIIKDEYCL 58 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~-~~La~~~~~ 58 (246)
.++++|+|.|+.||||||++ +.|++.++-
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 34579999999999999999 999998863
No 113
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.37 E-value=1.4e-05 Score=60.72 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=64.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCH---HHHHHHHHHHHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD---DLVVGIIDEAMKK 106 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~l~~~l~~ 106 (246)
.++.+++|.|++||||||+++.+.. +...++. +.++..+.+.... ..+.. +.........+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~- 71 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDEND-----------QTVTGAAFDVLHYIVSKRLQ- 71 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTTC-----------GGGHHHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcccc-----------hhhHHHHHHHHHHHHHHHHh-
Confidence 4567999999999999999998642 5566666 4444433321100 00000 001111111121
Q ss_pred CCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 107 ~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
.+...+++.........+....+.......| .+++||.|...+-.|...|.
T Consensus 72 --~g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 72 --LGKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp --TTCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred --CCCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence 1334566665544433333333445566677 78999999999999988774
No 114
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.36 E-value=4.4e-06 Score=71.25 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+.++|+|.|+.||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4557899999999999999999999874
No 115
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.32 E-value=4.4e-07 Score=76.19 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-------cceeehHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 66 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~l 66 (246)
...+.+|.|.|++||||||+++.|+..++ +..++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 46678999999999999999999998874 445666553
No 116
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.29 E-value=1e-05 Score=68.08 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+.++|+|.|+.||||||+++.|++.++
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457999999999999999999999874
No 117
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.23 E-value=5.8e-07 Score=75.34 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l 66 (246)
.+++|+|+||+||||||++..|++.++..++++|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 456899999999999999999999999999998654
No 118
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.19 E-value=1.8e-05 Score=70.18 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
...+++|+|.|.+||||+|+++.|.+.++-
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 688999999999999999999999999953
No 119
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.15 E-value=1.1e-06 Score=73.91 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l 66 (246)
++++|+|+||+||||||++..||++++..+||+|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 446899999999999999999999999999998654
No 120
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.15 E-value=6.6e-07 Score=74.22 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~l~~ 68 (246)
.++++|.|.|++||||||+++.|++.+| +.++++|++.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 3567899999999999999999999887 78899887653
No 121
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.13 E-value=3.9e-05 Score=59.72 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.12 E-value=2e-06 Score=66.37 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=62.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCc--ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc-
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK- 105 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~--~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~- 105 (246)
..++.+|+|.|++||||||+++.|+..++. .+++.+++... .......+-..+.. . +...+.+.+.....
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~~~~~~~-~-----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDPWLPQSH-Q-----QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCTTSSSHH-H-----HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccCCccchh-h-----hhHHHHHHHHHHHHH
Confidence 356679999999999999999999998644 46777665432 11100000000000 0 01111111111000
Q ss_pred CCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025937 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (246)
Q Consensus 106 ~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 160 (246)
....+..++++++..... ...+ ...+..+ .++++.++.+++..|+..|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~-l~~~----~~~~~~~-~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDW-LPAF----TALARPL-HYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHTSCEEEECSCCCTTT-THHH----HTTCSCE-EEEEEECCHHHHHHHHHTTC
T ss_pred HhccCCeEEEeccCcHHH-HHHH----HhcCCCe-EEEEecCCHHHHHHHHHhcC
Confidence 001123466776543211 1111 1112233 67999999999999998773
No 123
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.08 E-value=1.8e-05 Score=70.06 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=66.1
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC---cceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 104 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~---~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (246)
+...+++|+|.|..||||+|+++.|.+.++ +.++.+.. +..... +.. .+....
T Consensus 296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~------~~~--------yl~R~~ 351 (500)
T 3czp_A 296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER------AQP--------YLWRFW 351 (500)
T ss_dssp GGGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH------TSC--------TTHHHH
T ss_pred hCCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh------cch--------HHHHHH
Confidence 457889999999999999999999999985 33333311 110110 111 111122
Q ss_pred cCCC-CCcceEecCCCC------------CHH-------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCC
Q 025937 105 KKPS-CQKGFILDGFPR------------TEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (246)
Q Consensus 105 ~~~~-~~~g~iid~~~~------------~~~-------~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~ 163 (246)
...+ .+...|.|++-- +.. +...+++.+...| .+.+.+||++|.++..+|+..|..+|
T Consensus 352 ~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g-~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 352 RHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYG-IIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp TTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred HhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 2232 334455565321 111 2222333344444 46699999999999999999886544
No 124
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.05 E-value=3.2e-06 Score=70.26 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
+..+++|+|.||+||||||++..|++.++..+++.|.
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4556789999999999999999999999988888754
No 125
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.01 E-value=3.5e-06 Score=71.04 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l 66 (246)
+++|+|.||+||||||++..|++.++..++++|+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 35899999999999999999999999888888765
No 126
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.99 E-value=6.6e-05 Score=61.32 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=91.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCc---ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~---~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (246)
..+.+|+|.|..||||++..+.|.+.++- .++.... .+. .+ . .. ..+......
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~--------Pt~--eE----~--~~--------~ylwR~~~~ 128 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA--------PTD--EE----K--SH--------DFLWRIEKQ 128 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS--------CCH--HH----H--TS--------CTTHHHHTT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC--------CCh--hh----h--cC--------CHHHHHHHh
Confidence 47899999999999999999999999954 3333210 000 00 0 00 011111122
Q ss_pred C-CCCcceEecCCC-------------C------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025937 107 P-SCQKGFILDGFP-------------R------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (246)
Q Consensus 107 ~-~~~~g~iid~~~-------------~------~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g 166 (246)
+ ..+...|+|+.- . ...+...+++.|...|... +-+||++|.++..+|+..|..+|..
T Consensus 129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~i-lKf~LhIskeEQ~kR~~~R~~dP~k- 206 (289)
T 3rhf_A 129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTI-VKVMLNISKDEQKKRLIARLDDPSK- 206 (289)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEE-EEEEEECCHHHHHHHHHHHHHCGGG-
T ss_pred CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEE-EEEEEECCHHHHHHHHHHHhcCCcc-
Confidence 2 223444555421 1 1123344556666666544 7799999999999999988643321
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHH--HHHHHHhcHHHHHHHh-hcCcEEEEeCCCChhH---HHHHH
Q 025937 167 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSR--LEAFHKQTEPVIDYYS-KKGIVAQLHAEKPPQE---VTSEV 240 (246)
Q Consensus 167 ~~~~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~e---v~~~i 240 (246)
+=..++..++.+ ...|......+...-+ ....+++|+++...-- |.+.|
T Consensus 207 -------------------------~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~l 261 (289)
T 3rhf_A 207 -------------------------HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLL 261 (289)
T ss_dssp -------------------------GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred -------------------------cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence 112344445444 4555555554444332 2357899998754433 44455
Q ss_pred HHHh
Q 025937 241 QKAL 244 (246)
Q Consensus 241 ~~~l 244 (246)
.+.|
T Consensus 262 l~~L 265 (289)
T 3rhf_A 262 LDAL 265 (289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 127
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.99 E-value=3.8e-06 Score=69.90 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=31.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceeehHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l 66 (246)
+++|+|.||+||||||++..|++.++..+|++|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 56899999999999999999999999888887653
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.96 E-value=7.6e-06 Score=64.21 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC-----cceeehHH
Q 025937 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~-----~~~i~~~~ 65 (246)
++...+...+.....++.+|.|.|++||||||+++.|+..+. ...++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 444555555543356778999999999999999999999874 44555543
No 129
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.94 E-value=5.3e-06 Score=73.77 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=39.0
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc-------ceeehHH
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL-------CHLATGD 65 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~-------~~i~~~~ 65 (246)
..++..+.++++.-..+.++.|+|+|++||||||+++.|+++++. .+++.|+
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 345555555655323356689999999999999999999999986 5666654
No 130
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.93 E-value=9.4e-06 Score=65.30 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=35.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHHHHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~l~~~~~~ 72 (246)
++|.|+|++||||||+++.|++.+|+++++.++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5899999999999999999999999999998887776554
No 131
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.90 E-value=7.3e-06 Score=67.94 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=31.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 66 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l 66 (246)
..++|..++|.||||+|||++++.+|+.+|..++ +.+++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 3466678888999999999999999999987655 44444
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=1.1e-05 Score=61.84 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+.++.+++|.||+||||||+++.|+..+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45667999999999999999999998764
No 133
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.84 E-value=8.2e-06 Score=70.19 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
++++|+|.||+||||||++..|++.++..+|++|.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 35689999999999999999999999988888754
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=1.5e-05 Score=69.41 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+-++|+-|+|.||||+|||++|+.+|..++++++.+
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456778899999999999999999999999876644
No 135
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.82 E-value=7e-06 Score=69.50 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhhc--CCCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 15 VDLMTELLRRMKC--ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
..+...+...+.. .+...+.|+|.|++||||||+++.|++.+++.+
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3445555555542 233445799999999999999999999998877
No 136
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.7e-05 Score=69.11 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=31.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+.++|.=|+|.||||+|||++++.+|..+|++++.+
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 567778899999999999999999999999877644
No 137
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.9e-05 Score=68.79 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=31.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+-.+|+=|+|.||||+|||++++.+|..++++++.+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 456777899999999999999999999999877654
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.8e-05 Score=68.19 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=31.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+.++|.=|+|.||||+|||++|+.+|..++.+++.+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 456777899999999999999999999999877654
No 139
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=4.4e-05 Score=58.23 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=36.9
Q ss_pred hHHHHHHHHhhc-CCCCCeEEEEECCCCCChhHHHHHHHhHc----C--cceeehHHHHHH
Q 025937 16 DLMTELLRRMKC-ASKPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRA 69 (246)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~I~l~G~~gsGKsT~~~~La~~~----~--~~~i~~~~l~~~ 69 (246)
.+...+.+++.. ....+..++|.||+|+||||+++.++..+ | +.+++..+++..
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 334444444442 22346789999999999999999998876 4 356677666544
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.71 E-value=4.6e-05 Score=63.05 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=26.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...++.+|.|.|++||||||+++.|+..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457788999999999999999999999875
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.71 E-value=4.9e-05 Score=64.74 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 566899999999999999999999998776654
No 142
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=3.7e-05 Score=66.63 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..++|.=|+|.||||+|||++|+.+|..++.+++.+
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 456778899999999999999999999999877654
No 143
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.6e-05 Score=68.19 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=31.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+-++|+-|+|.||||+|||++++.+|..++++++.+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 457788999999999999999999999999877654
No 144
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.68 E-value=3.4e-05 Score=62.31 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=29.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..+..++|.||||+|||++++.++..++.+++.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 5566799999999999999999999998766543
No 145
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.66 E-value=5.7e-05 Score=61.86 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=29.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
..+..++|.||||+|||++++.++..++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 566789999999999999999999999876654
No 146
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=3.8e-05 Score=59.80 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+-++.+|+|.||+||||||+++.|.+.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44667999999999999999999999875
No 147
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.65 E-value=5.3e-05 Score=55.84 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+..+.+.+......+..|+|.|+||+|||++++.++...
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34455555555434455678999999999999999999865
No 148
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.65 E-value=4e-05 Score=61.96 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.+.-++|.||||+||||+++.++..++.+++.+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 455799999999999999999999998665543
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.63 E-value=7.6e-05 Score=62.54 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=29.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..++.-++|.||||+|||++++.++..++..++.+
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 34567899999999999999999999998766543
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.62 E-value=4.4e-05 Score=62.98 Aligned_cols=33 Identities=36% Similarity=0.630 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
.++..++|.||||+||||+++.++..++..++.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 356789999999999999999999999876554
No 151
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=4.3e-05 Score=63.46 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=32.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCccee--ehHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 69 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i--~~~~l~~~ 69 (246)
..++..++|.||||+||||+++.++..++..++ +..++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 456678999999999999999999999987665 44455443
No 152
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.62 E-value=0.00031 Score=58.19 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=82.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC-cceeehHHHHHHHHHccC--------c-hHHHHHHHHHcCCCcCHH----
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKT--------P-LGIKAKEAMDKGELVSDD---- 94 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~-~~~i~~~~l~~~~~~~~~--------~-~g~~~~~~~~~~~~~~~~---- 94 (246)
+..+..|+|+|| ||+|+++.|.+.+. -..+++..+-|. ..++. . .-..+...+.+|..+...
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~-~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g 177 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRP-KREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNS 177 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSC-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccC-CCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcC
Confidence 345568899998 79999999998773 121222111111 11110 0 223455566666543211
Q ss_pred ----HHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCccc
Q 025937 95 ----LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRTY 169 (246)
Q Consensus 95 ----~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~g~~~ 169 (246)
.....+.+.+. .+..+|+|.-+....+.+ .....| ++|++..| .+++.+ +.+|.
T Consensus 178 ~~YGt~~~~V~~~~~---~G~~vildid~~g~~~l~-------~~~~~p-i~IfI~pps~~~L~~-L~~R~--------- 236 (295)
T 1kjw_A 178 HLYGTSVQSVREVAE---QGKHCILDVSANAVRRLQ-------AAHLHP-IAIFIRPRSLENVLE-INKRI--------- 236 (295)
T ss_dssp EEEEEEHHHHHHHHH---TTCEEEECCCTTHHHHHH-------HTTCCC-EEEEECCSSHHHHHH-HCTTS---------
T ss_pred cEeeeeHHHHHHHHh---cCCeEEEEeCHHHHHHHH-------hcccCC-eEEEEECCCHHHHHH-HHhcC---------
Confidence 01122222222 245677876544332222 223456 88888876 555555 65552
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 170 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 170 ~~~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+.++.|+...... +..+...-.++.+| .+.++.++.|..+|.
T Consensus 237 --------------------------t~~~i~~rl~~a~~~----e~~~~~~fd~vivN--d~le~a~~~l~~ii~ 280 (295)
T 1kjw_A 237 --------------------------TEEQARKAFDRATKL----EQEFTECFSAIVEG--DSFEEIYHKVKRVIE 280 (295)
T ss_dssp --------------------------CHHHHHHHHHHHHHH----HHHHGGGCSEEECC--SSHHHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHH----HHhccccCeEEEEC--cCHHHHHHHHHHHHH
Confidence 235677777765321 11122222344444 378999999888764
No 153
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.61 E-value=3.4e-05 Score=67.40 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
++..|+|.||||+||||+++.||+.++.+++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 4568999999999999999999999998776553
No 154
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.60 E-value=4.3e-05 Score=63.76 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-------cceeehHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGD 65 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-------~~~i~~~~ 65 (246)
.++.+|.|.|++||||||+++.|+..++ +.+++++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 6678999999999999999999999776 55566654
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.60 E-value=8.7e-05 Score=62.34 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=36.9
Q ss_pred chhHHHHHHHHhhc---CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 14 SVDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
....+..+...+.. ....+..++|.|+||+|||++++.+++.++..++.+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 44555555555553 244556799999999999999999999998766544
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.00011 Score=55.86 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=30.9
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+.+..+.+.+. ...+..++|.|++|+||||+++.+++.+
T Consensus 27 ~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 27 RDEEIRRTIQVLQ--RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CHHHHHHHHHHHT--SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHh--cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3445555555553 3445678999999999999999999986
No 157
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.56 E-value=0.00012 Score=61.04 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=39.8
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+|.++.+. -..+......+.+. ....+..+++.||||+|||++++.+++.++..++.+
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~-~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITS-KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHH-TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCHHHHhCcHHHHHHHHHHHH-cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34444433 34455555555554 345556778888899999999999999998766644
No 158
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.56 E-value=0.00011 Score=64.71 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=31.5
Q ss_pred HHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC--cceeeh
Q 025937 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (246)
Q Consensus 23 ~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~ 63 (246)
+.+.....++.-++|.||||+|||++++.+++.++ ++++.+
T Consensus 54 ~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp HHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 33333445557899999999999999999999998 655543
No 159
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.55 E-value=5.6e-05 Score=61.63 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=30.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...+..++|.||||+|||++++.+++.++.+++.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 56667899999999999999999999998776644
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.55 E-value=8.3e-05 Score=60.95 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=24.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
-++|.||||+||||+++.|+..++...+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 4999999999999999999999876444
No 161
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.55 E-value=0.0001 Score=62.78 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
..+..++|.||||+|||++++.++..++..++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 456789999999999999999999999876653
No 162
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.54 E-value=5.5e-05 Score=58.75 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
-.+..|+|.|++||||||++..|+++.+ .+++.|
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 3456899999999999999999999876 777764
No 163
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=0.00028 Score=54.64 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=29.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 69 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~~ 69 (246)
..++|.|++|+||||+++.++..+ + +.+++..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 689999999999999999999876 3 344677665543
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=0.00013 Score=61.45 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhhcC---CCCCeEEEEECCCCCChhHHHHHHHhHcCcce
Q 025937 15 VDLMTELLRRMKCA---SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (246)
Q Consensus 15 ~~~~~~~~~~~~~~---~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~ 60 (246)
..+...+...+..+ ..++..++|.||||+||||+++.++..++..+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34444444444322 34446799999999999999999999987643
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.51 E-value=0.00012 Score=55.50 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+..+.+.+. ...+..++|.|++|+||||+++.+++.+
T Consensus 28 ~~~~~~l~~~l~--~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 28 DTEIRRAIQILS--RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHHHHHT--SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh--CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 334444555543 3445678999999999999999999987
No 166
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.49 E-value=8.3e-05 Score=62.38 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-Cccee
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHL 61 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i 61 (246)
.++.-|+|.||||+|||++++.++..+ +..++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 455789999999999999999999998 65544
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.49 E-value=0.00032 Score=58.62 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehHHHHH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLR 68 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l~~ 68 (246)
.+..++|.||||+||||+++.++..+ + +.+++..++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 45689999999999999999999977 4 45566655543
No 168
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.49 E-value=9.9e-05 Score=61.11 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.++..++|.||||+|||++++.+++.+
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4556689999999999999999999987
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.48 E-value=0.00016 Score=61.88 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 23 ~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
+.+.....++..++|.||+||||||+++.|+..++..++.
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3333355677799999999999999999999988765554
No 170
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.48 E-value=6e-05 Score=57.73 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
++++|.||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 478999999999999999999988643
No 171
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.48 E-value=7e-05 Score=64.06 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..+..++|.||||+|||++++.+++.++.+++.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 3456799999999999999999999998766644
No 172
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.46 E-value=8.5e-05 Score=61.34 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
..+..++|.||||+|||++++.+++.++..++.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 346689999999999999999999999865543
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.45 E-value=9.5e-05 Score=62.90 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.++.-|+|.||||+|||++++.++..++..++.+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 4456799999999999999999999998766543
No 174
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.42 E-value=8.7e-05 Score=58.65 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+-++..-.++.+++|.||+||||||+.+.|+..+
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33344344567799999999999999999999876
No 175
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.39 E-value=0.0002 Score=66.92 Aligned_cols=40 Identities=28% Similarity=0.525 Sum_probs=32.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh--HHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLR 68 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~--~~l~~ 68 (246)
..++.-++|.||||+|||.+++.+|...+.+++++ .+++.
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45667799999999999999999999999877754 34443
No 176
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.39 E-value=3.6e-05 Score=56.63 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
...+..+.+.+......+..|+|.|+||+|||++++.++...+
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3444555555543223345689999999999999999988776
No 177
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.37 E-value=0.00025 Score=61.00 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.++..++|.|+||+|||++++.++..++..++.+
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 3467899999999999999999999998876644
No 178
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.35 E-value=5.3e-05 Score=61.54 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..+.-++|.||||+|||++++.++..++.+++.+
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 4445588999999999999999999998766543
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.35 E-value=0.00027 Score=55.83 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+..++|.||||+||||+++.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998764
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.35 E-value=0.00025 Score=55.32 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=24.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
+..++|.||||+||||+|..|++.++-..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 346999999999999999999998754433
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.34 E-value=0.00014 Score=53.88 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+...++|.|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999999876
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.32 E-value=0.00013 Score=68.17 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=31.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..++|.-|+|.||||+|||++++.+|..+|..++.+
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 346778899999999999999999999999876654
No 183
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.31 E-value=0.0003 Score=55.31 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=31.6
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
.......+...+.. ...+..++|.|++|+||||+++.+++.++.
T Consensus 28 ~~~~~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444555555542 334458999999999999999999988743
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.30 E-value=0.00027 Score=59.94 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
..++..++|.||||+|||++++.+++.++.
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 334578999999999999999999999864
No 185
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.29 E-value=0.00038 Score=54.04 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=30.2
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+....+.+.+.. .....++|.|++|+|||++++.+++.+
T Consensus 22 ~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 22 QDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CHHHHHHHHHHHHT--TCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44555656666642 223349999999999999999999875
No 186
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.29 E-value=0.00023 Score=57.34 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=24.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
.-++|.||||+||||+++.++..++...+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34999999999999999999998865444
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.27 E-value=0.0002 Score=63.24 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=28.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
+.|.-++|.||||+||||+++.++...+.+++.+
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 3455699999999999999999999998776644
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.26 E-value=0.00042 Score=60.77 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=27.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..++|.||||+||||+++.+++.++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5799999999999999999999998766543
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=0.00023 Score=63.53 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=29.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
.+..++|.||||+||||+++.+++.+|+.++.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 446899999999999999999999999877654
No 190
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.25 E-value=0.00022 Score=59.58 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=25.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..++.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 5677899999999999999999999876
No 191
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.24 E-value=0.0002 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.028 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.++++|.|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999875
No 192
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.24 E-value=0.00021 Score=55.79 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..++.+++|.||+||||||+.+.|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35567999999999999999999998764
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.24 E-value=0.00024 Score=62.30 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-Cccee--ehHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHL--ATGDMLRA 69 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-~~~~i--~~~~l~~~ 69 (246)
.++.-++|.||||+|||++++.++..+ +..++ +..+++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 455789999999999999999999998 65544 44455443
No 194
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.22 E-value=0.00041 Score=61.53 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=29.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
...+.-++|.|+||+|||++++.++..++.+++.+
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45667899999999999999999999998766543
No 195
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00029 Score=59.45 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=32.1
Q ss_pred cccccCCC-CchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 5 SAANLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+|....+. .+........+.+....+.+. ++|.||+|+||||+++.++..+
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 44444333 234444444444312233344 9999999999999999999964
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.20 E-value=0.001 Score=58.20 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc-----Cc--ceeehHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY-----CL--CHLATGDML 67 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~-----~~--~~i~~~~l~ 67 (246)
+..++|.||||+||||+++.++..+ +. .+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 6689999999999999999999876 43 455665543
No 197
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.19 E-value=0.00031 Score=59.63 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=32.1
Q ss_pred chhHHHHHHHHhhcC--CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~--~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++....+....... ...+..++|.||||+||||+++.+++.+
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555555422 4566789999999999999999999987
No 198
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00048 Score=58.00 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.5
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+..+.......+.. ...+ .++|.||||+||||+++.++..+
T Consensus 30 ~~~~~~~L~~~i~~-g~~~-~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDE-GKLP-HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHT-TCCC-CEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-CCCc-eEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555555542 2223 38999999999999999999986
No 199
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.18 E-value=0.00054 Score=51.29 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.|+.||||||+.+.|+..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44777899999999999999999999876
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00049 Score=57.81 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=29.4
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..+.+..+...+... ....++|.||||+||||+++.+++.++
T Consensus 42 ~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455555555422 222389999999999999999999864
No 201
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.16 E-value=0.00035 Score=58.09 Aligned_cols=47 Identities=30% Similarity=0.438 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhhc---CCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 15 VDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
...+..+...+.. ....+..++|.|++|+|||++++.+++.++..++
T Consensus 18 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3444444444432 2344567899999999999999999999887654
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.14 E-value=0.00077 Score=56.10 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHhhcCCC-CCeEEEEECCCCCChhHHHHHHHhHcC----c--ceeehHHHHHH
Q 025937 20 ELLRRMKCASK-PDKRLILVGPPGSGKGTQSPIIKDEYC----L--CHLATGDMLRA 69 (246)
Q Consensus 20 ~~~~~~~~~~~-~~~~I~l~G~~gsGKsT~~~~La~~~~----~--~~i~~~~l~~~ 69 (246)
.+.+++...+. .+..++|.||||+|||+++..++..+. . .+++..+++..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 33444443222 357899999999999999999987543 3 44677666544
No 203
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=0.0004 Score=56.77 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=24.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
-++|.||+|+||||+++.++..++...+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 4999999999999999999998865444
No 204
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.12 E-value=0.00044 Score=55.99 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+..+.+.+......+..++|.|+||+|||++++.++...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 33444444443233446789999999999999999998764
No 205
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.12 E-value=0.00064 Score=57.82 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.1
Q ss_pred chhHHHHHHHHhhc--CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKC--ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+....+...... ....+..++|.||||+||||+++.+++.+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 33444444444432 34556689999999999999999999976
No 206
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00035 Score=58.39 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=25.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+..++|.||||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5677899999999999999999999988
No 207
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.10 E-value=0.00077 Score=57.08 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=32.6
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
.........+.+. ..+.+..++|.|++|+||||+++.+++.++.
T Consensus 21 ~~~~~~~L~~~l~-~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 21 QEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CHHHHHHHHHHHH-HTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHH-hCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4455555555554 2344557899999999999999999998864
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.09 E-value=0.00046 Score=58.48 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhc--CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMKC--ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+....+.+.+.. ....+..++|.|++|+||||+++.+++.+
T Consensus 27 ~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444442 14556789999999999999999999977
No 209
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.0004 Score=52.89 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.++|.|++||||||++..|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998764
No 210
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00082 Score=55.71 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=30.4
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..+......+.+.. ... +.++|.||||+||||+++.+++.++
T Consensus 30 ~~~~~~~l~~~l~~-~~~-~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKT-GSM-PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHH-TCC-CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCC-CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 44555555555542 222 3499999999999999999999863
No 211
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.06 E-value=0.00074 Score=59.53 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.++.+..... ...+..++|.|+||+|||++++.|+..+
T Consensus 186 ~~~i~~l~~~l~--r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 186 SKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 334444444443 3445578999999999999999999996
No 212
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.03 E-value=0.00043 Score=62.24 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
++..++|.||||+||||+++.++..++..++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 56789999999999999999999998765443
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.03 E-value=0.00044 Score=57.16 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...++|.||||+||||+++.+++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3479999999999999999999987
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.02 E-value=0.00068 Score=56.30 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+-+...-+++.+++|.||+||||||+++.|+.-+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344444456777899999999999999999999876
No 215
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.98 E-value=0.0011 Score=55.82 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=35.9
Q ss_pred CCCchhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 11 DVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
++.+.+.+....+.+. ..+.+..++|.||+|+||||+++.+++.+...
T Consensus 4 ~pw~~~~~~~l~~~i~-~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CGGGHHHHHHHHHHHH-TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCchHHHHHHHHHHHH-cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 3445556555555554 34556689999999999999999999998654
No 216
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.97 E-value=0.00081 Score=55.53 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=28.4
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
....+....+.+.. ...+ .++|.||||+||||+++.+++.+
T Consensus 22 ~~~~~~~l~~~l~~-~~~~-~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVER-KNIP-HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTT-TCCC-CEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhC-CCCC-eEEEECcCCcCHHHHHHHHHHHh
Confidence 34444444444432 2333 49999999999999999999986
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.96 E-value=0.00042 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIK 53 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La 53 (246)
-.++-+++|.||+||||||+++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3566799999999999999999888
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.96 E-value=0.00062 Score=64.06 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=29.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
..++..|+|.|||||||||+++.|+..++..++.+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 46677899999999999999999999998765543
No 219
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.95 E-value=0.00035 Score=58.54 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=31.8
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
..+....+...+.. +..++|.||||+|||++++.++..++..++
T Consensus 32 ~~~~~~~l~~~l~~----~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 32 QKYMINRLLIGICT----GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CHHHHHHHHHHHHH----TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cHHHHHHHHHHHHc----CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 34444444444432 237999999999999999999999986544
No 220
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.94 E-value=0.0004 Score=53.16 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
+++|+|++||||||+|..|+.. +.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence 3789999999999999999987 643
No 221
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.94 E-value=0.0098 Score=55.22 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=82.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC-cceeehHHHHHHHHHccCc---------hHHHHHHHHHcCCCcCHH-----
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTP---------LGIKAKEAMDKGELVSDD----- 94 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~-~~~i~~~~l~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~----- 94 (246)
..+..|+|+|| ||+|+.+.|.+.+. -..+++...-|. ...++. .-..++..+.+|..+...
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~-~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~ 604 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRP-KREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH 604 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccC-CCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence 45568889999 49999999998874 222344333332 111111 223455566665543211
Q ss_pred ---HHHHHHHHHHcCCCCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCccccc
Q 025937 95 ---LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 171 (246)
Q Consensus 95 ---~~~~~l~~~l~~~~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~g~~~~~ 171 (246)
.....+.+.+. .++.+|+|.-+.. .+. ++.....| ++|++..|.-..++++.+|.
T Consensus 605 ~YGt~~~~v~~~~~---~g~~~ildi~~~~---~~~----l~~~~~~p-~~ifi~pps~~~L~~l~~R~----------- 662 (721)
T 2xkx_A 605 LYGTSVQSVREVAE---QGKHCILDVSANA---VRR----LQAAHLHP-IAIFIRPRSLENVLEINKRI----------- 662 (721)
T ss_pred cceeeHHHHHHHHH---CCCcEEEeCCHHH---HHH----HHhcccCC-EEEEEeCCcHHHHHHHhccC-----------
Confidence 11222333332 2456777753221 111 11123455 88888876444444466552
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhcHHHHHHHhhcCcEEEEeCCCChhHHHHHHHHHhc
Q 025937 172 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245 (246)
Q Consensus 172 ~~~pp~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ev~~~i~~~l~ 245 (246)
+.+.++.|+...... +..+...-.++.+|. +.++.++.|.++|.
T Consensus 663 ------------------------t~~~~~~rl~~a~~~----e~~~~~~fd~vi~Nd--~l~~a~~~l~~~i~ 706 (721)
T 2xkx_A 663 ------------------------TEEQARKAFDRATKL----EQEFTECFSAIVEGD--SFEEIYHKVKRVIE 706 (721)
T ss_pred ------------------------CHHHHHHHHHHHHHH----HHhccccCcEEEECc--CHHHHHHHHHHHHH
Confidence 224567777664321 111222123444443 78999999988774
No 222
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.94 E-value=0.0013 Score=55.80 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhc--CCCCC--eEEEEECCCCCChhHHHHHHHhHc
Q 025937 15 VDLMTELLRRMKC--ASKPD--KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~--~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++....+...... ....+ +.++|.||+|+||||+++.++..+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444442 12333 389999999999999999999987
No 223
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0013 Score=54.48 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=30.4
Q ss_pred chhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+......+.+.. ...+. ++|.||+|+||||+++.+++.+
T Consensus 26 ~~~~~~~l~~~l~~-~~~~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 26 NKETIDRLQQIAKD-GNMPH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CTHHHHHHHHHHHS-CCCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence 44555656666542 23333 9999999999999999999986
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.90 E-value=0.00065 Score=57.08 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999876
No 225
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.00075 Score=59.89 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=26.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
+.-++|.||||+||||+++.++...+..++.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4459999999999999999999998765543
No 226
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.00045 Score=54.33 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=24.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.||+||||||+++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566799999999999999999998743
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.88 E-value=0.00065 Score=53.03 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC--cceeeh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~ 63 (246)
-.++.+++|.|++||||||++..++...+ ..+++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 35667999999999999999999987333 344554
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.88 E-value=0.00068 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.87 E-value=0.0012 Score=61.60 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc----------CcceeehH
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY----------CLCHLATG 64 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~----------~~~~i~~~ 64 (246)
.+.++.+..... ...+..++|.|+||+|||++++.|++.+ +..++..+
T Consensus 186 ~~~i~~l~~~l~--~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 186 SKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp HHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hHHHHHHHHHHh--CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 344444444443 3455578999999999999999999997 66666553
No 230
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.86 E-value=0.00071 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++.+++|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999999776
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.85 E-value=0.00076 Score=54.78 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..++.+++|.||+||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4566799999999999999999998765
No 232
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.85 E-value=0.00066 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999876
No 233
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.84 E-value=0.0015 Score=55.33 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+.++|+|+|+||+||||++..|+..+
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35667899999999999999999998775
No 234
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.82 E-value=0.00092 Score=52.03 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+..+++++++|+||||||++|..+...
T Consensus 2 ~~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 2 NAMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp --CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345689999999999999999886433
No 235
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.82 E-value=0.00064 Score=54.31 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 556799999999999999999997654
No 236
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00085 Score=55.71 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.81 E-value=0.00079 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.|++||||||+++.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998543
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.76 E-value=0.0017 Score=54.65 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.+.....+..++.|.|+|||||||+.+.|+..+
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344444456778899999999999999999998654
No 239
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.75 E-value=0.0026 Score=51.63 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
++..++|.||||+|||+++..|+..+++
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3457999999999999999999997644
No 240
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.74 E-value=0.0009 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+++++|++||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997777654
No 241
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.73 E-value=0.0017 Score=53.90 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+..+.+.+......+..++|.|+||+|||++++.++...
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34444555555434455678999999999999999999864
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.70 E-value=0.00088 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|+.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 566799999999999999999997754
No 243
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.70 E-value=0.0027 Score=52.95 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=28.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCcceeehHH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~~ 65 (246)
..++|.|++|+||||+++.+++..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 589999999999999999999998877777643
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.69 E-value=0.0009 Score=53.07 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
-.++.++.|.|++||||||++..++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356679999999999999999999984
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.69 E-value=0.00068 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999997654
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.66 E-value=0.00097 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.||.||||||+.+.|+--+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566799999999999999999998754
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.66 E-value=0.001 Score=53.34 Aligned_cols=28 Identities=29% Similarity=0.650 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+--+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567799999999999999999998754
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0013 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 356799999999999999999999876
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.63 E-value=0.0012 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-++.|.||.||||||+.+.|+--+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.62 E-value=0.00089 Score=54.83 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 556799999999999999999998754
No 251
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.61 E-value=0.0011 Score=50.21 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHcCcceeehH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~~ 64 (246)
...-++|.|++|+||||++..|.++ |+..++-|
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 4457899999999999999999884 88777654
No 252
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.61 E-value=0.0011 Score=54.49 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=25.9
Q ss_pred hhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 25 ~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+...-.++-+++|.|+||+||||+++.++..+
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33344666799999999999999999988765
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.61 E-value=0.0012 Score=54.66 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|.|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998665
No 254
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.60 E-value=0.0008 Score=56.49 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHcC
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.++|.|+||+|||++++.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 499999999999999999999886
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.60 E-value=0.0011 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 566789999999999999999998755
No 256
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.60 E-value=0.0012 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++-++.|.||.||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 257
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.60 E-value=0.00064 Score=59.74 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=30.1
Q ss_pred cccCCCCchhHHHHHHHHhhc----CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 7 ANLEDVPSVDLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+.+.++.+++.+....+.. .......++|.|++||||||++..++..+
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345555555554444443331 11122389999999999999999998876
No 258
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.58 E-value=0.00099 Score=54.25 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 556799999999999999999998754
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.58 E-value=0.0015 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.++-++.|.|+.||||||+.+.|+--
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56678999999999999999999874
No 260
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.58 E-value=0.0012 Score=53.98 Aligned_cols=27 Identities=44% Similarity=0.754 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-+++|.|+.||||||+.+.|+--+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 566799999999999999999998765
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.00053 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+.|.|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 262
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.58 E-value=0.0014 Score=48.51 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+||||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999763
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0015 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|+|+.||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 567899999999999999999999876
No 264
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.57 E-value=0.0012 Score=53.39 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 566799999999999999999998754
No 265
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.57 E-value=0.001 Score=53.62 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999997765
No 266
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.56 E-value=0.0012 Score=53.51 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.||.||||||+.+.|+.-+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 556799999999999999999998754
No 267
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.55 E-value=0.0014 Score=57.05 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|.|++||||||++..|+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999766
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.55 E-value=0.0011 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.||.||||||+.+.|+--+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999997754
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.55 E-value=0.0015 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.541 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.++-++.|.|+.||||||+.+.|+--
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999874
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.54 E-value=0.0011 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456699999999999999999998754
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.53 E-value=0.0011 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.||.||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998765
No 272
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.53 E-value=0.0011 Score=53.71 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+--+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456699999999999999999998755
No 273
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.52 E-value=0.0015 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...|+|.|++|+||||+..+|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 274
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.52 E-value=0.0018 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.|+|.|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.51 E-value=0.0019 Score=51.12 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=23.5
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+..+++++|++|+||||.+-.++.++
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34567899999999999999998888877
No 276
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.50 E-value=0.0016 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|++||||||+...|...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999988753
No 277
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.50 E-value=0.002 Score=48.18 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+||||||+...|...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356779999999999999999999753
No 278
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.002 Score=48.98 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+.+.|+|.|++||||||+...|...
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356679999999999999999999764
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.49 E-value=0.0014 Score=53.26 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.|+.||||||+.+.|+--+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3566799999999999999999998754
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.49 E-value=0.00071 Score=63.63 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=27.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
.++..++|.||||+||||+++.++..++..++.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 455678999999999999999999998765543
No 281
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.48 E-value=0.0016 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...|+|.|++||||||+.+.|+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999999874
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0017 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+|.+|+|.|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999765
No 283
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.48 E-value=0.0015 Score=55.54 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=25.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
...+.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987654
No 284
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.47 E-value=0.0018 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
+...|+|.|.+|+||||+..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 456899999999999999999865
No 285
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.46 E-value=0.0018 Score=47.64 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+..|+|.|++||||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999988753
No 286
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.46 E-value=0.0019 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...|+|.|++||||||+.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 287
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.46 E-value=0.0024 Score=48.64 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
......|+|.|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999999875
No 288
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.46 E-value=0.0015 Score=52.61 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456689999999999999999997654
No 289
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.44 E-value=0.0017 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++..|+|.|++|+||||+...|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 290
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.44 E-value=0.0017 Score=48.77 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+++..|+|.|.+|+||||+..+|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.0018 Score=51.39 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=26.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-----Ccceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~ 63 (246)
.++.+++|.|+|||||||++..++... +..+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456699999999999999988886543 3455554
No 292
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.43 E-value=0.0024 Score=47.36 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..+...|+|.|.+|+||||+...|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 35568999999999999999999965
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.43 E-value=0.0017 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 556799999999999999999998754
No 294
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.43 E-value=0.002 Score=60.12 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcCccee
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~~~~i 61 (246)
..++|.||||+|||++++.+++.++..++
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 37999999999999999999999986544
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.43 E-value=0.0016 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456689999999999999999998755
No 296
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.43 E-value=0.021 Score=46.97 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+..+..|+|+|| ||+|+.+.|.+.+.
T Consensus 97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 97 INYTRPVIILGP---LKDRINDDLISEYP 122 (292)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHhCh
Confidence 345567888888 59999999999874
No 297
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.0021 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.+.|+|.|.+||||||++..|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998875
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.41 E-value=0.002 Score=55.00 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..++..++|.||+||||||+.+.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4566789999999999999999998865
No 299
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.0021 Score=55.05 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 566799999999999999999998754
No 300
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.40 E-value=0.0021 Score=54.66 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.||+||||||+.+.|+--+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3566799999999999999999998754
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.40 E-value=0.0017 Score=52.47 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998654
No 302
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.40 E-value=0.0023 Score=47.10 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+...|+|.|.+||||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999754
No 303
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.40 E-value=0.0024 Score=47.73 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+||||||+..+|...
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhC
Confidence 345678999999999999999999753
No 304
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.39 E-value=0.0036 Score=52.76 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=26.7
Q ss_pred HhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 24 ~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.......+..+|+|.|++|+||||+...|+..+
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 333345677899999999999999999998654
No 305
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0024 Score=49.65 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
....+.|+|.|++||||||+...|....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999999998754
No 306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.39 E-value=0.0017 Score=49.30 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChhHHHHHHHh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..|+|.|++||||||+.++++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999976
No 307
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.39 E-value=0.0023 Score=54.14 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+...+|.|+|+|||||||+...|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346899999999999999999998754
No 308
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.39 E-value=0.0022 Score=50.32 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.+.|+|.|.+||||||++..|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998874
No 309
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0022 Score=54.55 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-++.|.||+||||||+.+.|+--+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3566799999999999999999998754
No 310
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.37 E-value=0.0019 Score=48.80 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++...|+|.|.+||||||+...|...
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999754
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.36 E-value=0.0019 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..|++.|.+||||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998764
No 312
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.36 E-value=0.0033 Score=59.53 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.++.+..... ...+..++|.|+||+||||+++.++..+
T Consensus 177 ~~i~~l~~~l~--~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 177 EEIRRVIQILL--RRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHHHHHH--CSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34444444432 3444568999999999999999999987
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.36 E-value=0.0025 Score=53.31 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|.|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998876
No 314
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.35 E-value=0.0023 Score=54.59 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 566799999999999999999998754
No 315
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.35 E-value=0.002 Score=51.70 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=22.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...++..|+|+|.+|+||||+...|...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCC
Confidence 3456789999999999999999988653
No 316
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.34 E-value=0.0019 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.++.+++|.|++||||||++..++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35568999999999999999998853
No 317
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0022 Score=53.58 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHcC--cceeeh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~ 63 (246)
+..++|.||||+||||++..++...| +.+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45679999999999999999987533 456665
No 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.33 E-value=0.0023 Score=48.38 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.....|+|.|.+|+||||+..+|...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 467789999999999999999998754
No 319
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.33 E-value=0.0024 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...|+|.|.+||||||+...|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.31 E-value=0.0014 Score=55.81 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.5
Q ss_pred HHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 23 ~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+..+..-+++..++|.|++||||||+.+.|+..+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 33443345566999999999999999999998763
No 321
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.30 E-value=0.0027 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.-+++|.||+||||||+.+.++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 334499999999999999999987765
No 322
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.30 E-value=0.0024 Score=54.14 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455689999999999999999998654
No 323
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.30 E-value=0.0026 Score=54.09 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 556789999999999999999998754
No 324
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.30 E-value=0.0025 Score=47.68 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+||||||+...|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45578999999999999999999764
No 325
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.30 E-value=0.0023 Score=50.89 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
......|+|+|.+|+||||+...|...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 345679999999999999999998764
No 326
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.29 E-value=0.0033 Score=50.45 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.0
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+..+..++++.|.+||||||++..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35677899999999999999999999654
No 327
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0025 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...|+|.|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 328
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.26 E-value=0.002 Score=57.27 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..++|.||||+|||++++.|+..++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4799999999999999999999874
No 329
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.25 E-value=0.0023 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
......|+|.|.+||||||+...|..
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34557899999999999999998854
No 330
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.25 E-value=0.0023 Score=49.69 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=22.7
Q ss_pred HhhcCCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 24 ~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+|+........|+|.|.+||||||+..+|...
T Consensus 20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34333456679999999999999999999864
No 331
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.25 E-value=0.0022 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+.|.|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998765
No 332
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0023 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...|+|.|++||||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988753
No 333
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.24 E-value=0.0024 Score=54.09 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=24.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.++.|.|++||||||++..++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566799999999999999999999876
No 334
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.23 E-value=0.0029 Score=53.85 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..++..+|+|.|.+||||||+++.+.-.+
T Consensus 29 ~~~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 29 RSARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 34677899999999999999999996444
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.23 E-value=0.0026 Score=47.11 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999754
No 336
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.22 E-value=0.0024 Score=48.30 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.....|+|.|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 455678999999999999999999864
No 337
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0019 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.++..|+|.|++||||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 6788999999999999999988863
No 338
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.22 E-value=0.0026 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.7
Q ss_pred CeEEEEECCCCCChhHHHHHHH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIK 53 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La 53 (246)
...|+|.|.+|+||||+..+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999885
No 339
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0022 Score=56.39 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-.++.++.|.|+.||||||+++.|+..+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34567799999999999999999998865
No 340
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.21 E-value=0.0028 Score=54.10 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 456689999999999999999998654
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.21 E-value=0.0019 Score=54.67 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 556699999999999999999998754
No 342
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0036 Score=47.83 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=22.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+.+...|+|.|.+|+||||+..+|...
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3566789999999999999999999764
No 343
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.20 E-value=0.0025 Score=51.78 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+-++.|.|+.||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998653
No 344
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.20 E-value=0.006 Score=56.95 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=26.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHc---C--cceeehHHH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDM 66 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~~l 66 (246)
.++|.||||+|||++++.+++.+ + +..++..++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 69999999999999999999986 3 344555443
No 345
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.20 E-value=0.0021 Score=48.83 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+||||||+...|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 456689999999999999999988654
No 346
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.20 E-value=0.0022 Score=49.39 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
......|+|.|.+||||||+...|..
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHh
Confidence 45567999999999999999999864
No 347
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.20 E-value=0.0035 Score=46.98 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+..++...
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 456679999999999999999998764
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.20 E-value=0.0023 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|+.||||||+.+.|+--+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 566799999999999999999997754
No 349
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.20 E-value=0.0037 Score=47.50 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+.+...|+|.|.+||||||+..++...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3556679999999999999999887653
No 350
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.021 Score=47.26 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCc-ceeehHHHHHHHHHccCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~-~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (246)
+..+..|+|.|| ||+|+.+.|.+.+.- ..+.+. +. + .+.++..++-..+.+.+.
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~~----------r----~i~~~~fis~~~V~~vl~------ 196 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET--VS----------R----TDSPSKIIKLDTVRVIAE------ 196 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHHHHHH------
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc--cc----------c----cccCCCeecHHHHHHHHH------
Confidence 444556888899 799999999888742 222221 00 0 134566665555555443
Q ss_pred CCCcceEecCCCCCHHHHHHHHHHHHhcCCCcCEEEEEec-CHHHHHHH
Q 025937 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI-DDAVLEER 155 (246)
Q Consensus 108 ~~~~g~iid~~~~~~~~~~~l~~~l~~~~~~~~~vI~L~~-~~e~~~~R 155 (246)
.++.+|+|--+....+. +.....| ++|+|.. +.+++.+|
T Consensus 197 -~Gk~~ILDId~QGa~~l-------k~~~~~p-i~IFI~PPS~eeL~~r 236 (308)
T 3kfv_A 197 -KDKHALLDVTPSAIERL-------NYVQYYP-IVVFFIPESRPALKAL 236 (308)
T ss_dssp -TTCEEEECCCHHHHHHH-------HHTTCCC-EEEEEEESCHHHHHHH
T ss_pred -CCCcEEEEECHHHHHHH-------HhcCCCC-EEEEEeCCCHHHHHHH
Confidence 25678887443332222 2233566 5566555 56667665
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=48.17 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
......|+|.|.+|+||||+...|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 455578999999999999999998763
No 352
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.17 E-value=0.0033 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChhHHHHHHHh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..|+|.|.+||||||+..+|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999864
No 353
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.17 E-value=0.0043 Score=47.88 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+..+.+++|++||||||.+-.++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456799999999999999999988887
No 354
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.17 E-value=0.0027 Score=47.55 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.+...|+|.|.+|+||||+..++...
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999763
No 355
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.17 E-value=0.0061 Score=56.88 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
...+..++|.|+||+|||++++.|+..+
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3456688999999999999999999987
No 356
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.17 E-value=0.0031 Score=48.43 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999764
No 357
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.16 E-value=0.0017 Score=53.99 Aligned_cols=27 Identities=41% Similarity=0.669 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+++.++.|.|++||||||+.+.|+.-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 566799999999999999999998765
No 358
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.16 E-value=0.0027 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+...|+|.|.+|+||||+...|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999764
No 359
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.16 E-value=0.0031 Score=48.02 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
......|+|.|.+||||||+...|...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345679999999999999999999753
No 360
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.16 E-value=0.0016 Score=50.29 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..++..|+|.|++||||||+.+.|+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45667899999999999999988854
No 361
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.15 E-value=0.0028 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++.+|+|.|++||||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 362
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.14 E-value=0.0036 Score=47.09 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+||||||+...|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 455678999999999999999998754
No 363
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.13 E-value=0.0032 Score=47.71 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...+.|+|.|.+||||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 44568999999999999999998764
No 364
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.13 E-value=0.003 Score=54.26 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 566799999999999999999998643
No 365
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.13 E-value=0.003 Score=48.22 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=21.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+||||||+..++...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999863
No 366
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.13 E-value=0.0037 Score=47.22 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++...|+|.|.+||||||+..++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 57789999999999999999998753
No 367
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.12 E-value=0.0031 Score=47.91 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.++...|+|.|.+|+||||+...|...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 456689999999999999999999753
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.12 E-value=0.003 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...|+|.|++|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 369
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.12 E-value=0.0039 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
....|+|.|.+|+||||+...|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.11 E-value=0.0035 Score=47.12 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+||||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 34578999999999999999999753
No 371
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.11 E-value=0.0031 Score=47.68 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.....|+|.|.+|+||||+...|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999975
No 372
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.11 E-value=0.0033 Score=53.35 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=27.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc---C--cceeehH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~---~--~~~i~~~ 64 (246)
.++.++.|.|+|||||||++..++... + +.+++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 556799999999999999999998764 2 3456553
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.11 E-value=0.0029 Score=48.02 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++..|+|.|.+||||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4468999999999999999999764
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.10 E-value=0.0034 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
....|+|.|.+|+||||+..+|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999998753
No 375
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.10 E-value=0.0034 Score=54.34 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+.++.|.|++||||||+.+.|+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 35569999999999999999999874
No 376
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.10 E-value=0.0041 Score=47.69 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...+...|+|.|.+|+||||+...|...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3466789999999999999999999753
No 377
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.09 E-value=0.004 Score=47.75 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.+...|+|.|.+||||||+...|...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345578999999999999999998754
No 378
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.0034 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.++.+++|.|+||+|||++|..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5567999999999999999988764
No 379
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.08 E-value=0.0031 Score=48.44 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=22.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+..+|...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 456789999999999999999999864
No 380
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.07 E-value=0.0043 Score=53.84 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..+.-+++|+||.||||||+.+.+...+.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35566899999999999999999988763
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.07 E-value=0.0027 Score=47.41 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
+...|+|.|.+||||||+...|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999999974
No 382
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0041 Score=47.09 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.++...|+|.|.+||||||+..+|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 56788999999999999999999985
No 383
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.07 E-value=0.0031 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
+...|+|.|.+|+||||+...|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999875
No 384
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.07 E-value=0.0073 Score=49.88 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.+|++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999776
No 385
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0035 Score=46.92 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+|+||||+...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45578999999999999999998764
No 386
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.05 E-value=0.0035 Score=46.93 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44568999999999999999988753
No 387
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.04 E-value=0.0039 Score=48.18 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=21.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+||||||+..++...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 466789999999999999999988753
No 388
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.04 E-value=0.004 Score=47.22 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..+...|+|.|.+||||||+...|..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 34557999999999999999999875
No 389
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.03 E-value=0.0041 Score=47.17 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+...|+|.|.+||||||+.+.+...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3456899999999999999988876553
No 390
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.03 E-value=0.0026 Score=47.84 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.+...|+|.|.+|+||||+...|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999999974
No 391
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.0058 Score=50.72 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++.....+.++.. + .+.++|.||||+||||+++.+++.
T Consensus 4 ~~~~~L~~~i~~~-~-~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 4 DQLETLKRIIEKS-E-GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp CHHHHHHHHHHTC-S-SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-C-CcEEEEECCCCCCHHHHHHHHHHh
Confidence 4444455555422 2 679999999999999999999985
No 392
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.03 E-value=0.004 Score=47.57 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..+...|+|.|.+||||||+..+|..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 46778999999999999999999854
No 393
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.03 E-value=0.0037 Score=46.62 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+||||||+...|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999764
No 394
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.02 E-value=0.0041 Score=47.25 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.+...|+|.|.+||||||+..+|...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 345578999999999999999988764
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.01 E-value=0.002 Score=54.62 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.||+||||||+.+.|+--+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 556799999999999999999998654
No 396
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.01 E-value=0.0042 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+|+||||+..+|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999764
No 397
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.01 E-value=0.0033 Score=47.39 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+||||||+...|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999998754
No 398
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.01 E-value=0.0039 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+.|+|.|++||||||+...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 399
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.99 E-value=0.0039 Score=47.52 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
+...+.|+|.|.+||||||+..+|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45667999999999999999998864
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.99 E-value=0.0033 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=23.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
..++|.||+|+||||+++.++..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 5899999999999999999999874
No 401
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0052 Score=46.78 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.....|+|.|.+||||||+...|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4567999999999999999999976
No 402
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.98 E-value=0.0048 Score=52.02 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.++.++.|.|+|||||||+|..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56679999999999999999999886
No 403
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.98 E-value=0.0051 Score=48.34 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999998653
No 404
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.96 E-value=0.0045 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999665
No 405
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.95 E-value=0.0053 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhH
Q 025937 34 RLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.|+|.|.+|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 406
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.94 E-value=0.0034 Score=48.06 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=22.0
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+.+...|+|.|.+||||||+.+.+...+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 45677899999999999999998876643
No 407
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0035 Score=47.80 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+...|...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcC
Confidence 345678999999999999999999754
No 408
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.94 E-value=0.0065 Score=48.07 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc---Cc--ceeehH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---CL--CHLATG 64 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~---~~--~~i~~~ 64 (246)
+....|++.|++|+||||++-.++..+ |. .+++++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 456789999999999999987777665 43 344553
No 409
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.93 E-value=0.0039 Score=53.73 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIK 53 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La 53 (246)
.+..++.|.|+|||||||++..|+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 456799999999999999999876
No 410
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.92 E-value=0.0041 Score=47.80 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
..++..|+|.|++||||||+..+|..
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45567899999999999999999864
No 411
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.91 E-value=0.0041 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...|+|.|.+|+||||+...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999854
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.90 E-value=0.0039 Score=47.02 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+..+|...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 456679999999999999999999764
No 413
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.90 E-value=0.0056 Score=50.52 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++.+|+|.|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998876
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.89 E-value=0.0043 Score=47.27 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+...+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 455679999999999999999999764
No 415
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.88 E-value=0.0055 Score=46.89 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+...|...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 466789999999999999999998753
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.88 E-value=0.0037 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+-++++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3468899999999999999999854
No 417
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.88 E-value=0.0051 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+..++|.|++||||||+.+.|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4589999999999999999997543
No 418
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.87 E-value=0.0059 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
-+.+|+|+.||||||+.+.|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3889999999999999999977664
No 419
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.86 E-value=0.0047 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+..+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999763
No 420
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.84 E-value=0.0052 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44568999999999999999998763
No 421
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.83 E-value=0.0034 Score=55.93 Aligned_cols=27 Identities=30% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+..++|.||+||||||+.+.|+..+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445579999999999999999998766
No 422
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.82 E-value=0.0047 Score=52.24 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=27.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~ 64 (246)
.++.++.|.|+|||||||++..++... .+.+++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456789999999999999999998654 34566653
No 423
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.82 E-value=0.0034 Score=52.69 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=26.8
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.+..+..-.++..++|.|++||||||+.+.|+..+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444333445689999999999999999998876
No 424
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.81 E-value=0.0049 Score=47.95 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.+...|+|.|.+|+||||+...|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999875
No 425
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.81 E-value=0.0045 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..|+|.|.+||||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47899999999999999998753
No 426
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.78 E-value=0.0042 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
.....|+|.|.+||||||+..+|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3446899999999999999998853
No 427
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.78 E-value=0.0058 Score=49.09 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|+|.+||||||+...|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 45679999999999999999999754
No 428
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.77 E-value=0.0061 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
....++|.|++||||||+.+.|+ .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34689999999999999999998 54
No 429
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.77 E-value=0.0069 Score=46.71 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45679999999999999999998753
No 430
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.76 E-value=0.0049 Score=49.82 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.|||||||+...|...
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCC
Confidence 45578999999999999999999763
No 431
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.76 E-value=0.0066 Score=50.54 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-+++|.|+||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566799999999999999999998654
No 432
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0066 Score=46.14 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.....|+|.|.+|+||||+...|....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 345689999999999999999998653
No 433
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.005 Score=46.66 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+...|+|.|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999999764
No 434
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.0077 Score=52.23 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.9
Q ss_pred hhcCCCCCeE--EEEECCCCCChhHHHHHHHhH
Q 025937 25 MKCASKPDKR--LILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 25 ~~~~~~~~~~--I~l~G~~gsGKsT~~~~La~~ 55 (246)
++..-+++.+ ++|+|++||||||+.+.|+..
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3334455556 999999999999999999764
No 435
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.73 E-value=0.007 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+|+|.|++||||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998655
No 436
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.72 E-value=0.0065 Score=46.94 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
......|+|.|.+|+||||+..+|...
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999998753
No 437
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.72 E-value=0.0048 Score=51.56 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.++.|.|+|||||||+|..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 456699999999999999999998753
No 438
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.72 E-value=0.0055 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCCeEEEE--ECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLIL--VGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l--~G~~gsGKsT~~~~La~~~ 56 (246)
..+..++| .|++|+||||+++.+++.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35567888 9999999999999998875
No 439
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.72 E-value=0.0052 Score=47.27 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
....|+|.|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999753
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.72 E-value=0.0059 Score=47.39 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=22.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
......|+|.|.+||||||+...|...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 345578999999999999999999753
No 441
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.72 E-value=0.0067 Score=50.58 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=25.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhHcC--cceeeh
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~~--~~~i~~ 63 (246)
..++|.|++|+||||+++.+++..+ ..+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 4999999999999999999998864 344554
No 442
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.71 E-value=0.0072 Score=45.79 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999998754
No 443
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.70 E-value=0.012 Score=52.93 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
++....+.............|+|.|++|+||||++..++.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3444444444433334567899999999999999998853
No 444
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.67 E-value=0.0062 Score=57.68 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..++|.||+|+|||++++.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 445
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.66 E-value=0.0072 Score=51.27 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-----Ccceeeh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~ 63 (246)
.++.+++|.|+||+||||+|..++... .+.+++.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 355689999999999999999988754 3566776
No 446
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.65 E-value=0.0072 Score=46.29 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...|+|.|.+||||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998754
No 447
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.63 E-value=0.0074 Score=46.13 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
....|+|.|.+|+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999754
No 448
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.62 E-value=0.0058 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.++.++.|.|+|||||||+|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999864
No 449
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.60 E-value=0.005 Score=46.63 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
++...|+|.|.+||||||+...|..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 6788999999999999999998843
No 450
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.59 E-value=0.0087 Score=46.57 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+...|+|.|.+|+||||+..+|...
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 345679999999999999999999764
No 451
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.56 E-value=0.0085 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++.+|+|.|+.||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 452
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.56 E-value=0.031 Score=49.02 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=22.9
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHcCc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~ 58 (246)
.+..+..|+|.||+|+| +++.|.+.+.-
T Consensus 220 ~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~ 247 (468)
T 3shw_A 220 EAGFLRPVTIFGPIADV---AREKLAREEPD 247 (468)
T ss_dssp CCSSCCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred cCCCCCEEEEECCCHHH---HHHHHHHhCCC
Confidence 34677789999999999 88988888743
No 453
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.55 E-value=0.0061 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..++.|.|++||||||+.+.|+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 458899999999999999999653
No 454
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.55 E-value=0.0068 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+..+|+|+|+||+||||+...|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44568999999999999999999753
No 455
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.0077 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+..+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999998753
No 456
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.54 E-value=0.0043 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=11.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
....|+|.|.+||||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998864
No 457
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.007 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+..|+|.|.+||||||+...|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34568999999999999999999763
No 458
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.52 E-value=0.015 Score=46.93 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=26.8
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
..+.+.....+...|+|.|.+|+||||+...|...
T Consensus 25 ~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 25 FFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444334456789999999999999999999764
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.0078 Score=53.93 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+.++-++.|.||.||||||+.+.|+-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5677899999999999999999998754
No 460
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.51 E-value=0.0068 Score=46.56 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+||||||+...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999764
No 461
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.48 E-value=0.0097 Score=52.12 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++.+++|.|+||+||||++..++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999887753
No 462
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=95.44 E-value=0.025 Score=48.58 Aligned_cols=31 Identities=10% Similarity=-0.024 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHcCcceee
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~ 62 (246)
+..+..|+|.||+| +|+++.|.+.+.-.+.+
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~ 259 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQI 259 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCcccccc
Confidence 45777899999998 89999999887533343
No 463
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.43 E-value=0.016 Score=46.90 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.......|+|.|.+|+||||+...|...
T Consensus 35 ~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 35 EDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp TTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3455689999999999999999999754
No 464
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.43 E-value=0.01 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhH
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
...|+|.|.|||||||+...|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999864
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.39 E-value=0.0098 Score=53.30 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999999999999999998754
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.38 E-value=0.0081 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34468999999999999999998653
No 467
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.36 E-value=0.012 Score=46.25 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
|.+...|+|.|.+|+|||++..++..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 34557899999999999999999875
No 468
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.36 E-value=0.013 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
+.+.+|.||.||||||+...+.=
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 55889999999999999887754
No 469
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.35 E-value=0.0098 Score=53.81 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=25.0
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.-+++..+.|.||+||||||+.+.|+.-+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566799999999999999999998766
No 470
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.31 E-value=0.0044 Score=56.26 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHcCcc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEYCLC 59 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~~~~ 59 (246)
.++|.|+||+|||++++.+++.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCc
Confidence 79999999999999999999987643
No 471
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.30 E-value=0.011 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhHc
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988765
No 472
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.011 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
....|+|.|.+|+||||+..+|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999864
No 473
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.28 E-value=0.016 Score=45.39 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..+..+.+++|++||||||.+-.++.++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3566899999999999999998888877
No 474
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.27 E-value=0.0095 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhH
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
+.|+|.|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999764
No 475
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.012 Score=46.02 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
....|+|.|.+|+||||+..++..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999874
No 476
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.25 E-value=0.011 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
++..|+|.|.+||||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999764
No 477
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.012 Score=53.39 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
..++-++.|.||.||||||+.+.|+-.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3567799999999999999999998755
No 478
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.23 E-value=0.0087 Score=54.14 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+++..+.|.||+||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 556789999999999999999998765
No 479
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.22 E-value=0.013 Score=48.71 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHhhc------------CCCCCeEEEEECCCCCChhHHHHHHHhHcCcceeeh
Q 025937 13 PSVDLMTELLRRMKC------------ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (246)
Q Consensus 13 ~~~~~~~~~~~~~~~------------~~~~~~~I~l~G~~gsGKsT~~~~La~~~~~~~i~~ 63 (246)
++.+....+..+... ..-.+.-++|.|++|+||||++..|.++ |...++-
T Consensus 113 ~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 113 ATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp CHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred chhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 455555666666552 1123568999999999999999999885 7776654
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.19 E-value=0.011 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhHc
Q 025937 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 33 ~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-++.|.||+||||||+.+.|+--+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999998765
No 481
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.18 E-value=0.0094 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 025937 32 DKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 32 ~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...|+|.|++|+||||+.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999864
No 482
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.16 E-value=0.014 Score=49.33 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 22 ~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
.+-+ ..-.++-++.|.|++|+||||+.+.|+....
T Consensus 62 ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 62 IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444 3345667999999999999999999999874
No 483
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.14 E-value=0.0093 Score=54.10 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
+++..+.|.|++||||||+.+.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 556789999999999999999998765
No 484
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.13 E-value=0.0059 Score=47.57 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
....+.|+|+|.+||||||+...|...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345678999999999999999998664
No 485
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.015 Score=45.45 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.....|+|.|.+|+||||+...|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 44568999999999999999999763
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.11 E-value=0.013 Score=48.52 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhH
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+..|+|.|.+||||||+..++...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999998654
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.09 E-value=0.0091 Score=46.53 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHH-HHhH
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPI-IKDE 55 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~-La~~ 55 (246)
+.+...|+|.|.+||||||+..+ +...
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45567899999999999999998 5444
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.08 E-value=0.011 Score=52.67 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHhhc-CCCCCeEEEEECCCCCChhHHHHHH
Q 025937 22 LRRMKC-ASKPDKRLILVGPPGSGKGTQSPII 52 (246)
Q Consensus 22 ~~~~~~-~~~~~~~I~l~G~~gsGKsT~~~~L 52 (246)
++.+.. .-.++-+++|.|++||||||+++.+
T Consensus 28 Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 28 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 444443 3356779999999999999999994
No 489
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.08 E-value=0.014 Score=50.91 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHhhcCCCCCeEEEEECCCCCChhHHHHHHHhHcC
Q 025937 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (246)
Q Consensus 21 ~~~~~~~~~~~~~~I~l~G~~gsGKsT~~~~La~~~~ 57 (246)
+.+-+ ..-.++-++.|.|++||||||+.+.|+....
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34444 3446667999999999999999999999874
No 490
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.05 E-value=0.011 Score=53.73 Aligned_cols=28 Identities=43% Similarity=0.714 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-+++..+.|.||+||||||+.+.|+.-+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3566799999999999999999998765
No 491
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.04 E-value=0.0042 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 025937 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 31 ~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
++..++|.|++||||||+.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 456999999999999999999854
No 492
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.04 E-value=0.024 Score=50.85 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhcC-CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 16 DLMTELLRRMKCA-SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
+...++.+..... .....+|.|.|+.|+||||+|+.++.
T Consensus 135 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 135 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3344444444322 34567999999999999999999995
No 493
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.02 E-value=0.012 Score=48.70 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhH
Q 025937 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (246)
Q Consensus 28 ~~~~~~~I~l~G~~gsGKsT~~~~La~~ 55 (246)
.+.++-.|+|+|.||+||||+...|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3556669999999999999999999754
No 494
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.01 E-value=0.015 Score=50.68 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++.+++|.|+||+||||++..++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3556799999999999999999888653
No 495
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.01 E-value=0.014 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~ 54 (246)
...+..+.|.|+||+||||+.+.|..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 45567999999999999999999987
No 496
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.01 E-value=0.013 Score=49.95 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc-----CcceeehH
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~-----~~~~i~~~ 64 (246)
.++.+++|.|+||+||||+|..++... .+.+++.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455689999999999999999988754 35667664
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.011 Score=52.95 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998754
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.95 E-value=0.013 Score=52.24 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=24.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 29 ~~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
-.++-+++|.|++||||||+++.++...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3566799999999999999999998654
No 499
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.90 E-value=0.014 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHc
Q 025937 34 RLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 34 ~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
++.|.|+||+||||+|-.++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999988776543
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.90 E-value=0.014 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhHc
Q 025937 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (246)
Q Consensus 30 ~~~~~I~l~G~~gsGKsT~~~~La~~~ 56 (246)
.++-++.|.|+.||||||+.+.|+-.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
Done!