BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025938
         (246 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 112 ARPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIV 170
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV
Sbjct: 71  GRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIV 127

Query: 171 AKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT 203
             + +++++R R V +L G GTVS+VTLRQP T
Sbjct: 128 ESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVT 160


>sp|Q810A1|ZNF18_MOUSE Zinc finger protein 18 OS=Mus musculus GN=Znf18 PE=2 SV=1
          Length = 556

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 74  NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQA-------LK 126
           N S  +G  LS  VK++         + +++L  S LPARP+  P  D +        L+
Sbjct: 175 NSSSATGELLSHGVKEESDM------EPELALAASQLPARPEERPVRDQELGTAVLPPLQ 228

Query: 127 RSRGRPPGTGRKQQ-----LATLGEWMNSSAGIAFA-PHVISIG-VGEDIVAKMLSFSQQ 179
             + R   + +K+Q     L T G+ ++  AGI+ + P + ++   GE++V   L  +++
Sbjct: 229 EEQWRHLDSTQKEQYWDLMLETYGKMVSGVAGISNSKPDLTNLAEYGEELVGLHLHGAEK 288

Query: 180 RPRVVC 185
             R+ C
Sbjct: 289 MARLPC 294


>sp|Q642B9|ZNF18_RAT Zinc finger protein 18 OS=Rattus norvegicus GN=Znf18 PE=2 SV=1
          Length = 556

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 102 QVSLGLSPLPARPKRSPASDSQ-------ALKRSRGRPPGTGRKQQ-----LATLGEWMN 149
           +++L  S LPARP+  P  D +       +L+  + R   + +K+Q     L T G+ ++
Sbjct: 197 ELALAASQLPARPEERPTRDQEVGTALLPSLQEEQWRHLDSTQKEQYWDLMLETYGKMVS 256

Query: 150 SSAGIAFA-PHVISIG-VGEDIVAKMLSFSQQRPRVVC 185
             AGI+ + P + ++   GE++V   L  +++  R  C
Sbjct: 257 GVAGISNSKPDLTNMAEYGEELVGLHLHSAEKMARAPC 294


>sp|P48786|PRH_PETCR Pathogenesis-related homeodomain protein OS=Petroselinum crispum
           GN=PRH PE=2 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 67  KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQ--- 123
           K +  G      S   L D  K+ RGRPRK      V  GL  L    + +  S SQ   
Sbjct: 350 KELVIGQETVAKSPSQLVDAGKRGRGRPRK------VQTGLEQLVPVQETAAKSSSQLGD 403

Query: 124 ALKRSRGRP 132
             KRSRGRP
Sbjct: 404 TGKRSRGRP 412


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=orc4 PE=1 SV=1
          Length = 972

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 88  KKKRGRPRKYAPDGQVSL--GLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLAT 143
           K+ RGRPRK  P+   S   GLSPL   P           KR RGRPP    +Q++A 
Sbjct: 201 KRGRGRPRKIKPEEGSSSQNGLSPLVVLPA----------KRGRGRPPLHRSEQKIAN 248


>sp|B4NXA8|AFF4_DROYA AF4/FMR2 family member 4 OS=Drosophila yakuba GN=lilli PE=3 SV=1
          Length = 1671

 Score = 31.2 bits (69), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 66  PKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDG 101
           PKH    H+       P +D VKK RGRPRK    G
Sbjct: 827 PKHPGLDHSAVSVQAQPATDTVKKGRGRPRKQQQSG 862


>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
           OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
          Length = 215

 Score = 31.2 bits (69), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 34  QSGLMQTPPGFRSSSNLNIPTQ-PNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKK--- 89
           Q+G+     G   S+N  +PT  P V  TF      VN  H+  VP  + LSD  KK   
Sbjct: 106 QTGIFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELL 165

Query: 90  KRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKR 127
           KR R           L  S LP   +  P +    LKR
Sbjct: 166 KRYR-----------LKESQLPRIQRMDPVALYLGLKR 192


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,268,047
Number of Sequences: 539616
Number of extensions: 4449495
Number of successful extensions: 11398
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 11320
Number of HSP's gapped (non-prelim): 146
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)