Query 025938
Match_columns 246
No_of_seqs 194 out of 355
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 21:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 99.7 3E-16 1E-20 130.1 10.9 85 151-236 13-110 (154)
2 2p6y_A Hypothetical protein VC 99.7 3.4E-16 1.2E-20 128.1 10.6 80 156-236 2-94 (142)
3 2dt4_A Hypothetical protein PH 99.5 1.3E-14 4.5E-19 118.3 7.6 68 157-224 10-82 (143)
4 2h6l_A Hypothetical protein; N 99.5 1.4E-14 4.9E-19 118.4 7.2 68 157-225 10-83 (146)
5 3htn_A Putative DNA binding pr 99.4 2.1E-13 7.3E-18 112.4 8.6 81 157-237 16-115 (149)
6 3hwu_A Putative DNA-binding pr 99.1 1.7E-10 5.8E-15 94.7 9.6 81 157-237 13-111 (147)
7 2ezd_A High mobility group pro 96.8 0.00043 1.5E-08 42.6 1.5 16 124-139 3-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 70.1 1.3 4.5E-05 35.1 0.9 14 87-100 3-16 (140)
9 1t3g_A X-linked interleukin-1 56.7 7.8 0.00027 31.3 3.2 29 162-190 50-78 (159)
10 1fyx_A TOLL-like receptor 2; b 44.7 12 0.0004 29.7 2.4 29 162-190 43-71 (149)
11 4i95_A Putative uncharacterize 43.8 26 0.00089 29.1 4.4 32 183-216 37-70 (142)
12 2j67_A TOLL like receptor 10; 43.0 13 0.00044 30.7 2.5 29 162-190 73-101 (178)
13 4esy_A CBS domain containing m 36.2 21 0.00073 27.4 2.6 42 153-194 21-62 (170)
14 4gqw_A CBS domain-containing p 36.1 29 0.001 25.2 3.3 40 155-194 90-129 (152)
15 3h16_A TIR protein; bacteria T 32.2 32 0.0011 27.0 3.1 31 162-192 56-86 (154)
16 3fio_A A cystathionine beta-sy 31.9 1E+02 0.0034 19.7 5.2 32 160-192 2-33 (70)
17 2rih_A Conserved protein with 30.1 55 0.0019 23.8 4.0 40 152-191 7-46 (141)
18 3k2v_A Putative D-arabinose 5- 29.7 41 0.0014 25.0 3.2 42 151-192 29-72 (149)
19 3sl7_A CBS domain-containing p 28.3 41 0.0014 25.3 3.0 41 154-194 102-142 (180)
20 1pbj_A Hypothetical protein; s 27.1 69 0.0023 22.5 3.9 37 155-192 6-42 (125)
21 3lfr_A Putative metal ION tran 25.9 79 0.0027 23.1 4.2 40 153-193 73-112 (136)
22 3j0a_A TOLL-like receptor 5; m 25.9 45 0.0015 32.6 3.5 32 159-190 708-739 (844)
23 3kpb_A Uncharacterized protein 25.7 50 0.0017 23.2 2.9 38 155-192 6-43 (122)
24 2yzi_A Hypothetical protein PH 25.2 82 0.0028 22.6 4.1 47 152-198 9-59 (138)
25 1o50_A CBS domain-containing p 24.6 67 0.0023 24.0 3.6 39 155-194 101-139 (157)
26 4gzv_A Hypothetical protein; A 24.1 78 0.0027 26.2 4.1 32 183-216 37-70 (142)
27 3nqr_A Magnesium and cobalt ef 23.6 97 0.0033 22.2 4.2 37 156-193 75-111 (127)
28 3kbe_A Superoxide dismutase [C 23.4 1.8E+02 0.0062 23.6 6.2 35 182-217 3-37 (157)
29 2o16_A Acetoin utilization pro 23.3 1.2E+02 0.0042 22.7 4.9 38 155-193 83-120 (160)
30 3i8n_A Uncharacterized protein 22.8 1.1E+02 0.0037 22.0 4.4 37 156-193 78-114 (130)
31 3gby_A Uncharacterized protein 21.5 59 0.002 23.3 2.7 39 153-192 8-46 (128)
32 3jtf_A Magnesium and cobalt ef 21.2 1.1E+02 0.0036 22.1 4.0 38 155-193 74-111 (129)
33 3fhm_A Uncharacterized protein 21.0 92 0.0031 23.5 3.8 43 152-195 95-137 (165)
34 3kpb_A Uncharacterized protein 20.9 74 0.0025 22.3 3.0 41 154-194 66-106 (122)
35 2ef7_A Hypothetical protein ST 20.5 1.1E+02 0.0036 21.9 3.9 45 151-196 5-49 (133)
36 1o50_A CBS domain-containing p 20.5 1.1E+02 0.0036 22.9 4.0 47 152-198 18-68 (157)
37 3ghd_A A cystathionine beta-sy 20.3 2E+02 0.007 19.5 5.1 30 160-189 2-31 (70)
38 3oi8_A Uncharacterized protein 20.2 1.1E+02 0.0039 22.8 4.2 38 155-193 108-145 (156)
39 3fv6_A YQZB protein; CBS domai 20.0 97 0.0033 23.2 3.7 58 138-196 4-62 (159)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.67 E-value=3e-16 Score=130.09 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCCCCceeEEEEecCCccHHHHHHHHHhhCC-ceEEEEeccceeeeeEEeCCCCCCCceEEE--EEEEeeeeeeeec---
Q 025938 151 SAGIAFAPHVISIGVGEDIVAKMLSFSQQRP-RVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK--- 224 (246)
Q Consensus 151 s~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtye--FEILSLSGS~l~~--- 224 (246)
+.++.+++|+|+|.+||||.++|.+||++++ +++|||+++|+|++|+||+++... +++++ ||||||+|++.+.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~~~H 91 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTGEH 91 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTEEE
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCCCCE
Confidence 5667899999999999999999999998877 599999999999999999999766 66677 9999999999762
Q ss_pred ------CCCCc-eeeeeee
Q 025938 225 ------KKIHQ-KNFHFCT 236 (246)
Q Consensus 225 ------~~~g~-~~gh~~~ 236 (246)
+..|+ .+|||..
T Consensus 92 lHisl~~~~G~v~GGHL~~ 110 (154)
T 2hx0_A 92 LHLAVSDPYGVMLGGHMMP 110 (154)
T ss_dssp EEEEEECTTSCEEEEEECT
T ss_pred EEEEEECCCCCEEccccCC
Confidence 44444 4888876
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.66 E-value=3.4e-16 Score=128.08 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=70.0
Q ss_pred ceeEEEEecCCccHHHHHHHHHhhCC-ceEEEEeccceeeeeEEeCCCCCCCceEEE--EEEEeeeeeeeec--------
Q 025938 156 FAPHVISIGVGEDIVAKMLSFSQQRP-RVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK-------- 224 (246)
Q Consensus 156 f~pHvI~V~~GeDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtye--FEILSLSGS~l~~-------- 224 (246)
|++|+++|.+||||.++|.+||++.+ +++||++++|+|++|+||+++... +++++ |||+||+|++.++
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~~~HlHisl 80 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQHCHLHIAV 80 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSSCEEEEEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCCCCEEEEEE
Confidence 89999999999999999999999988 599999999999999999999865 66777 9999999999763
Q ss_pred -CCCCce-eeeeee
Q 025938 225 -KKIHQK-NFHFCT 236 (246)
Q Consensus 225 -~~~g~~-~gh~~~ 236 (246)
+..|++ +|||..
T Consensus 81 ~~~~G~v~GGHl~~ 94 (142)
T 2p6y_A 81 ADAQGRVWGGHLLE 94 (142)
T ss_dssp ECTTSCEEEEEECT
T ss_pred ECCCCCEEccccCC
Confidence 444554 888865
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.53 E-value=1.3e-14 Score=118.26 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=58.1
Q ss_pred eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCC---ceEEE--EEEEeeeeeeeec
Q 025938 157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWK 224 (246)
Q Consensus 157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~---tvtye--FEILSLSGS~l~~ 224 (246)
++|+|+|.+||||.++|.+||+++++..|+++++|+|++|+||+++.... .++++ |||+||+|++.+.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~ 82 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK 82 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence 79999999999999999999999885444459999999999999876542 35565 9999999999774
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.52 E-value=1.4e-14 Score=118.40 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=59.7
Q ss_pred eeEEEEecCCccHHHHHHHHHhhCCc-eEEEEeccceeeeeEEeCCCCCCC---ceEEE--EEEEeeeeeeeecC
Q 025938 157 APHVISIGVGEDIVAKMLSFSQQRPR-VVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWKK 225 (246)
Q Consensus 157 ~pHvI~V~~GeDV~~kI~~Faqq~~r-AicILSa~GsVSnVTLRqp~ssg~---tvtye--FEILSLSGS~l~~~ 225 (246)
++|+|+|.+||||.++|.+||++.+. +.|| +++|+|++|+||+++.... +++++ ||||||+|++.+.+
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~v-s~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~d 83 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHI-SAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD 83 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEE-EEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEE-EEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCC
Confidence 69999999999999999999999884 6666 9999999999999987652 46676 99999999998853
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.44 E-value=2.1e-13 Score=112.40 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=66.4
Q ss_pred eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCC---ceEEE--EEEEeeeeeeeec-------
Q 025938 157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWK------- 224 (246)
Q Consensus 157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~---tvtye--FEILSLSGS~l~~------- 224 (246)
+.++++|.+||||.++|.+||++++...|+++++|++++|+||+++.... .++++ |||+||+|++.+.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~p~~H 95 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQVYLH 95 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCCceEE
Confidence 78999999999999999999999997555559999999999999875442 35666 9999999999874
Q ss_pred ------CC-CCceeeeeeec
Q 025938 225 ------KK-IHQKNFHFCTL 237 (246)
Q Consensus 225 ------~~-~g~~~gh~~~~ 237 (246)
+. +...+|||..-
T Consensus 96 lH~sl~~~~G~v~gGHl~~g 115 (149)
T 3htn_A 96 LHITVGRSDYSALAGHLLSA 115 (149)
T ss_dssp EEEEEECTTSBEEEEEEEEE
T ss_pred EEEEEECCCCCEEeEEeCCC
Confidence 33 44458888764
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.14 E-value=1.7e-10 Score=94.71 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=65.1
Q ss_pred eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCC---ceEEE-EEEEeeeeeeeec--------
Q 025938 157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE-VEALCLYLFLFWK-------- 224 (246)
Q Consensus 157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~---tvtye-FEILSLSGS~l~~-------- 224 (246)
+-++++|.+||||.++|.+||+++....+++++.|++++++|+..+.... ..+++ +||+||+|++.+.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~~~Ei~sl~Gtis~~dG~p~~Hl 92 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGSIAWKEGKPSIHA 92 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEecCcEEEEEEEEEEcCCCCceEEE
Confidence 34899999999999999999999996444559999999999998765432 24566 9999999999864
Q ss_pred ------CCCCceeeeeeec
Q 025938 225 ------KKIHQKNFHFCTL 237 (246)
Q Consensus 225 ------~~~g~~~gh~~~~ 237 (246)
+.+...+|||..-
T Consensus 93 H~~~~d~~g~v~GGHL~~g 111 (147)
T 3hwu_A 93 HGTVTDGTFQGAGGHLLGL 111 (147)
T ss_dssp EEEEECTTCCEEEEEEEEE
T ss_pred EEEEECCCCcEEeeEecCc
Confidence 3345678888765
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.79 E-value=0.00043 Score=42.63 Aligned_cols=16 Identities=50% Similarity=0.814 Sum_probs=14.5
Q ss_pred hcccCCCCCCCCCCcc
Q 025938 124 ALKRSRGRPPGTGRKQ 139 (246)
Q Consensus 124 ~~Kr~RGRP~GS~nK~ 139 (246)
..||+||||.|||||.
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCcCCCCCcCcccccC
Confidence 4799999999999995
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=70.11 E-value=1.3 Score=35.10 Aligned_cols=14 Identities=43% Similarity=0.947 Sum_probs=6.0
Q ss_pred CcCCCCCCCCCCCC
Q 025938 87 VKKKRGRPRKYAPD 100 (246)
Q Consensus 87 ~KkKRGRPRKY~pd 100 (246)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 47999999999875
No 9
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=56.70 E-value=7.8 Score=31.28 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=26.2
Q ss_pred EecCCccHHHHHHHHHhhCCceEEEEecc
Q 025938 162 SIGVGEDIVAKMLSFSQQRPRVVCILSGR 190 (246)
Q Consensus 162 ~V~~GeDV~~kI~~Faqq~~rAicILSa~ 190 (246)
.+.+|+++.+.|.+..++..+.|+|||.+
T Consensus 50 D~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 50 DLIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp HCCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred cccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 36799999999999999999999999964
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=44.73 E-value=12 Score=29.67 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=26.4
Q ss_pred EecCCccHHHHHHHHHhhCCceEEEEecc
Q 025938 162 SIGVGEDIVAKMLSFSQQRPRVVCILSGR 190 (246)
Q Consensus 162 ~V~~GeDV~~kI~~Faqq~~rAicILSa~ 190 (246)
.+.+|+++.+.|.+..++..+.|+|||.+
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 47899999999999999998999999975
No 11
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=43.82 E-value=26 Score=29.09 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.6
Q ss_pred eEEEEeccceeeeeEEeCCCCCCCceE-EE-EEEEe
Q 025938 183 VVCILSGRGTVSSVTLRQPATSVPTVT-YE-VEALC 216 (246)
Q Consensus 183 AicILSa~GsVSnVTLRqp~ssg~tvt-ye-FEILS 216 (246)
..=|||.-|++.|++++. + ++.+++ |. |||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 577999999999999993 3 455555 34 88876
No 12
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=43.02 E-value=13 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=26.2
Q ss_pred EecCCccHHHHHHHHHhhCCceEEEEecc
Q 025938 162 SIGVGEDIVAKMLSFSQQRPRVVCILSGR 190 (246)
Q Consensus 162 ~V~~GeDV~~kI~~Faqq~~rAicILSa~ 190 (246)
.+.+|+++.+.|.+..++..+.|+|||.+
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 37799999999999999888999999975
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=36.24 E-value=21 Score=27.39 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceee
Q 025938 153 GIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVS 194 (246)
Q Consensus 153 g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVS 194 (246)
..-|++.++.|.+.+.|.+.+..+.+++-.++.|+...|.+-
T Consensus 21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lv 62 (170)
T 4esy_A 21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLV 62 (170)
T ss_dssp GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEE
T ss_pred HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEE
Confidence 345788899999999999999999998889999998776443
No 14
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=36.13 E-value=29 Score=25.23 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=33.5
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceee
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVS 194 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVS 194 (246)
-|++.++.|.+.+++.+.+..|.+.+...++|+...|.+.
T Consensus 90 ~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~ 129 (152)
T 4gqw_A 90 LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLV 129 (152)
T ss_dssp HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEE
T ss_pred hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEE
Confidence 4666778899999999999999988888999998777554
No 15
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=32.24 E-value=32 Score=27.03 Aligned_cols=31 Identities=13% Similarity=-0.001 Sum_probs=27.1
Q ss_pred EecCCccHHHHHHHHHhhCCceEEEEeccce
Q 025938 162 SIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192 (246)
Q Consensus 162 ~V~~GeDV~~kI~~Faqq~~rAicILSa~Gs 192 (246)
++.+|+++.+.|..-.++....|+|+|-+=.
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~ 86 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTHFF 86 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHHHH
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcchh
Confidence 5789999999999988888889999997644
No 16
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=31.90 E-value=1e+02 Score=19.67 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=27.1
Q ss_pred EEEecCCccHHHHHHHHHhhCCceEEEEeccce
Q 025938 160 VISIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192 (246)
Q Consensus 160 vI~V~~GeDV~~kI~~Faqq~~rAicILSa~Gs 192 (246)
++.|.+.+.+.+.+..+.+++...+.|+.. |.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~ 33 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DE 33 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TE
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CE
Confidence 578999999999998888888788988876 53
No 17
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=30.08 E-value=55 Score=23.85 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=33.5
Q ss_pred CCCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccc
Q 025938 152 AGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRG 191 (246)
Q Consensus 152 ~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~G 191 (246)
++.-|++.++.|.+.+.+.+.+..+.+++...+.|+...|
T Consensus 7 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~ 46 (141)
T 2rih_A 7 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN 46 (141)
T ss_dssp GGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE
T ss_pred HHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC
Confidence 4456777899999999999999999888888999997654
No 18
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=29.73 E-value=41 Score=24.97 Aligned_cols=42 Identities=7% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCCCcee--EEEEecCCccHHHHHHHHHhhCCceEEEEeccce
Q 025938 151 SAGIAFAP--HVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192 (246)
Q Consensus 151 s~g~~f~p--HvI~V~~GeDV~~kI~~Faqq~~rAicILSa~Gs 192 (246)
.+..-|++ .++.|.+.+.+.+.+..+.+.+...+.|+...|.
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~ 72 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMN 72 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCB
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCc
Confidence 34556888 8899999999999999999888889999986543
No 19
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=28.25 E-value=41 Score=25.32 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=34.0
Q ss_pred CCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceee
Q 025938 154 IAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVS 194 (246)
Q Consensus 154 ~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVS 194 (246)
.-|++.++.|.+.+++.+.+..|.+.+-+.+.|+...|.+.
T Consensus 102 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~v 142 (180)
T 3sl7_A 102 DLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLI 142 (180)
T ss_dssp HHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEE
T ss_pred HHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEE
Confidence 34677788999999999999989888888999998766544
No 20
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=27.06 E-value=69 Score=22.48 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=30.5
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccce
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~Gs 192 (246)
-|++.++.|.+.+.+.+.+..+.+.+...+.|+. .|.
T Consensus 6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~ 42 (125)
T 1pbj_A 6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGV 42 (125)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTE
T ss_pred hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCe
Confidence 3666788999999999999888888888888887 543
No 21
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=25.89 E-value=79 Score=23.12 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=33.3
Q ss_pred CCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEecccee
Q 025938 153 GIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTV 193 (246)
Q Consensus 153 g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsV 193 (246)
..-|++ ++.|.+.+++.+.+..|.+.+-+.+.|+...|.+
T Consensus 73 ~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~l 112 (136)
T 3lfr_A 73 KKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGV 112 (136)
T ss_dssp GGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCE
T ss_pred HHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCE
Confidence 345677 8999999999999999999988889999876544
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=25.89 E-value=45 Score=32.57 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=27.9
Q ss_pred EEEEecCCccHHHHHHHHHhhCCceEEEEecc
Q 025938 159 HVISIGVGEDIVAKMLSFSQQRPRVVCILSGR 190 (246)
Q Consensus 159 HvI~V~~GeDV~~kI~~Faqq~~rAicILSa~ 190 (246)
|-=.+.+|+++++.|.+-.++..+.|||||-+
T Consensus 708 ~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~ 739 (844)
T 3j0a_A 708 EERDFVPGENRIANIQDAIWNSRKIVCLVSRH 739 (844)
T ss_dssp SSSSCCSSSCHHHHHHHHHHHSSEEEEEECTT
T ss_pred EccccCCCchHHHHHHHHHHHhCeEEEEeccc
Confidence 33357899999999999999999999999975
No 23
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=25.66 E-value=50 Score=23.20 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=31.5
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccce
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~Gs 192 (246)
-|++.++.|.+.+.+.+.+..|.+.+...+.|+...|.
T Consensus 6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~ 43 (122)
T 3kpb_A 6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGK 43 (122)
T ss_dssp HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSB
T ss_pred hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCC
Confidence 35667888999999999999999888889999986554
No 24
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=25.20 E-value=82 Score=22.64 Aligned_cols=47 Identities=2% Similarity=0.103 Sum_probs=36.5
Q ss_pred CCCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEecc----ceeeeeEE
Q 025938 152 AGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGR----GTVSSVTL 198 (246)
Q Consensus 152 ~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~----GsVSnVTL 198 (246)
++.-|+..++.|.+.+.+.+.+..+.+.+...+.|+... |.|+.-.|
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl 59 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 59 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHH
Confidence 445577789999999999999999988888899999754 45554444
No 25
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=24.61 E-value=67 Score=23.98 Aligned_cols=39 Identities=3% Similarity=0.114 Sum_probs=32.9
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceee
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVS 194 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVS 194 (246)
-|++ ++.|.+.+++.+.+..|.+.+-..+.|+...|.+.
T Consensus 101 im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~v 139 (157)
T 1o50_A 101 IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIV 139 (157)
T ss_dssp HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEE
Confidence 4677 89999999999999999999888999998666443
No 26
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=24.08 E-value=78 Score=26.18 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.0
Q ss_pred eEEEEeccceeeeeEEeCCCCCCCceE-EE-EEEEe
Q 025938 183 VVCILSGRGTVSSVTLRQPATSVPTVT-YE-VEALC 216 (246)
Q Consensus 183 AicILSa~GsVSnVTLRqp~ssg~tvt-ye-FEILS 216 (246)
..=|||.-|+..|++++... +.+++ |. ||+.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~~--~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPGA--DAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTTS--CCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCCC--CcEEEEeEEEEecC
Confidence 57799999999999996633 34544 44 88876
No 27
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=23.57 E-value=97 Score=22.18 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=30.7
Q ss_pred ceeEEEEecCCccHHHHHHHHHhhCCceEEEEecccee
Q 025938 156 FAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTV 193 (246)
Q Consensus 156 f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsV 193 (246)
|++ ++.|.+.+++.+.+..|.+.+-+.+.|+...|.+
T Consensus 75 m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~ 111 (127)
T 3nqr_A 75 LRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV 111 (127)
T ss_dssp CBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCE
T ss_pred cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCE
Confidence 455 5789999999999999998888899999876654
No 28
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A
Probab=23.38 E-value=1.8e+02 Score=23.64 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=24.3
Q ss_pred ceEEEEeccceeeeeEEeCCCCCCCceEEEEEEEee
Q 025938 182 RVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCL 217 (246)
Q Consensus 182 rAicILSa~GsVSnVTLRqp~ssg~tvtyeFEILSL 217 (246)
+|+|||.+.+..-.|++.|.... ..+.++.+|--|
T Consensus 3 ~Avavl~g~~V~G~v~f~q~~~g-~~v~v~~~l~GL 37 (157)
T 3kbe_A 3 RAVAVLRGETVTGTIWITQKSEN-DQAVIEGEIKGL 37 (157)
T ss_dssp EEEEEEBCSSCEEEEEEECSSTT-SCCEEEEEEESC
T ss_pred EEEEEEeCCCEEEEEEEEEeCCC-CeEEEEEEEECC
Confidence 69999999887888999997532 234445555444
No 29
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=23.27 E-value=1.2e+02 Score=22.73 Aligned_cols=38 Identities=5% Similarity=0.158 Sum_probs=31.9
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEecccee
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTV 193 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsV 193 (246)
-|++-++.|.+.+++.+.+..|.+.+-..+.|+.. |.+
T Consensus 83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~l 120 (160)
T 2o16_A 83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVL 120 (160)
T ss_dssp HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEE
T ss_pred HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEE
Confidence 35567899999999999999999888888999876 654
No 30
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=22.85 E-value=1.1e+02 Score=22.03 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=31.2
Q ss_pred ceeEEEEecCCccHHHHHHHHHhhCCceEEEEecccee
Q 025938 156 FAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTV 193 (246)
Q Consensus 156 f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsV 193 (246)
|++ ++.|.+.+++.+.+..|.+++-+.+.|+...|.+
T Consensus 78 m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~ 114 (130)
T 3i8n_A 78 MRP-IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTV 114 (130)
T ss_dssp SEE-CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCE
T ss_pred hcC-CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCE
Confidence 555 7899999999999999999888889999876644
No 31
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=21.51 E-value=59 Score=23.34 Aligned_cols=39 Identities=8% Similarity=0.039 Sum_probs=33.1
Q ss_pred CCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccce
Q 025938 153 GIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192 (246)
Q Consensus 153 g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~Gs 192 (246)
...|+..+..|.+.+.+.+.+..+.+++...+.|+.. |.
T Consensus 8 ~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~ 46 (128)
T 3gby_A 8 SYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ER 46 (128)
T ss_dssp GGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TE
T ss_pred HHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CE
Confidence 3457777899999999999999999888889999987 54
No 32
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=21.16 E-value=1.1e+02 Score=22.11 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=30.5
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEecccee
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTV 193 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsV 193 (246)
-|++ ++.|.+.+++.+.+..|.+.+-+.+.|+...|.+
T Consensus 74 ~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~ 111 (129)
T 3jtf_A 74 LVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGI 111 (129)
T ss_dssp GCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCE
T ss_pred HhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCE
Confidence 3566 7899999999999999988888888898876543
No 33
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=21.03 E-value=92 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeee
Q 025938 152 AGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSS 195 (246)
Q Consensus 152 ~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSn 195 (246)
...-|+..++.|.+.+++.+.+..|.+.+...+.|+.. |.+.-
T Consensus 95 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~G 137 (165)
T 3fhm_A 95 VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAG 137 (165)
T ss_dssp GGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEE
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEE
Confidence 44456677889999999999999999998889999987 75543
No 34
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=20.88 E-value=74 Score=22.28 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=33.5
Q ss_pred CCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceee
Q 025938 154 IAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVS 194 (246)
Q Consensus 154 ~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVS 194 (246)
.-|.+.++.|.+.+++.+.+..|.+++...+.|+...|.+.
T Consensus 66 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~ 106 (122)
T 3kpb_A 66 EIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106 (122)
T ss_dssp GTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEE
T ss_pred HHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEE
Confidence 34566788899999999999999998888999998766543
No 35
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=20.54 E-value=1.1e+02 Score=21.86 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeee
Q 025938 151 SAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSV 196 (246)
Q Consensus 151 s~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnV 196 (246)
.++.-|++.++.|.+.+.+.+.+..+.+.+...+.|+. .|.+--+
T Consensus 5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Gi 49 (133)
T 2ef7_A 5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGI 49 (133)
T ss_dssp BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEE
No 36
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=20.48 E-value=1.1e+02 Score=22.87 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=37.1
Q ss_pred CCCCceeEEEEecCCccHHHHHHHHHhhCCce-EEEEecc---ceeeeeEE
Q 025938 152 AGIAFAPHVISIGVGEDIVAKMLSFSQQRPRV-VCILSGR---GTVSSVTL 198 (246)
Q Consensus 152 ~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rA-icILSa~---GsVSnVTL 198 (246)
++.-|++.++.|.+.+.+.+.+..+.+.+... +.|+... |.|+.-.|
T Consensus 18 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl 68 (157)
T 1o50_A 18 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHL 68 (157)
T ss_dssp HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHH
Confidence 45578888999999999999999998888788 8998653 66554444
No 37
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=20.26 E-value=2e+02 Score=19.50 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=26.7
Q ss_pred EEEecCCccHHHHHHHHHhhCCceEEEEec
Q 025938 160 VISIGVGEDIVAKMLSFSQQRPRVVCILSG 189 (246)
Q Consensus 160 vI~V~~GeDV~~kI~~Faqq~~rAicILSa 189 (246)
+|+|.+.+.|.+++..+.+++-.++.|.-.
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~ 31 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG 31 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 689999999999999999888889988865
No 38
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=20.22 E-value=1.1e+02 Score=22.84 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=31.6
Q ss_pred CceeEEEEecCCccHHHHHHHHHhhCCceEEEEecccee
Q 025938 155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTV 193 (246)
Q Consensus 155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsV 193 (246)
-|++ ++.|.+.+++.+.+..|.+++.+.+.|+...|.+
T Consensus 108 im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~ 145 (156)
T 3oi8_A 108 ILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGT 145 (156)
T ss_dssp HCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSE
T ss_pred HcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCE
Confidence 3566 7899999999999999998888889999776543
No 39
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=20.04 E-value=97 Score=23.20 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=0.0
Q ss_pred ccCcccccccccc-CCCCCceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeee
Q 025938 138 KQQLATLGEWMNS-SAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSV 196 (246)
Q Consensus 138 K~k~~~lg~~~~~-s~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnV 196 (246)
|.+...+.+.+.. .++.-|++ .+.|.+.+.+.+.+..+.+.+...+.|+...|.+--+
T Consensus 4 ~~~~~~l~~~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Gi 62 (159)
T 3fv6_A 4 KTGTQLLADKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGV 62 (159)
T ss_dssp ---CHHHHHHHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred CchHHHHHHHHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEE
Done!