BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025941
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 10/191 (5%)
Query: 53 KDFQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWGGGAGADANAPIFVYLGAEESLDG 112
K++ Y+ Q +DHF + + TF QRY++ KYW G+ I Y G E +
Sbjct: 1 KNYSVLYFQQKVDHFGFN--TVKTFNQRYLVADKYWKKNGGS-----ILFYTGNEGDIIW 53
Query: 113 DISVIGFLTDNAARFNALLVYIEHRYYGKSIPFGSRKEALKNASTLGYFNSAQAITDYAE 172
+ GF+ D A A+LV+ EHRYYG+S+PFG + K++ L + S QA+ D+AE
Sbjct: 54 FCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGDN--SFKDSRHLNFLTSEQALADFAE 111
Query: 173 ILLYIKEKY-NARHSPVIVIGGSYGGMLAAWFRLKYPHAALGALASSAPILYFDDITPQN 231
++ ++K A + PVI IGGSYGGMLAAWFR+KYPH +GALA+SAPI F+D+ P
Sbjct: 112 LIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCG 171
Query: 232 GYYSIVTRDFR 242
+ IVT DFR
Sbjct: 172 VFMKIVTTDFR 182
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 109/187 (58%), Gaps = 8/187 (4%)
Query: 55 FQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWGGGAGADANAPIFVYLGAEESLDGDI 114
FQ ++ Q LDHFN+ TF QR++++ ++W G G PIF Y G E +
Sbjct: 8 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEG-----PIFFYTGNEGDVWAFA 62
Query: 115 SVIGFLTDNAARFNALLVYIEHRYYGKSIPFGSRKEALKNASTLGYFNSAQAITDYAEIL 174
+ F+ + AA ALLV+ EHRYYGKS+PFG++ + L QA+ D+AE+L
Sbjct: 63 NNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELL 119
Query: 175 LYIKEKYNARHSPVIVIGGSYGGMLAAWFRLKYPHAALGALASSAPILYFDDITPQNGYY 234
++ A+ +P I GGSYGGML+A+ R+KYPH GALA+SAP+L + N ++
Sbjct: 120 RALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFF 179
Query: 235 SIVTRDF 241
VT DF
Sbjct: 180 RDVTADF 186
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 107/187 (57%), Gaps = 8/187 (4%)
Query: 55 FQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWGGGAGADANAPIFVYLGAEESLDGDI 114
FQ ++ Q LDHFN+ TF QR++++ ++W G G PIF Y G E +
Sbjct: 5 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEG-----PIFFYTGNEGDVWAFA 59
Query: 115 SVIGFLTDNAARFNALLVYIEHRYYGKSIPFGSRKEALKNASTLGYFNSAQAITDYAEIL 174
+ F+ + AA ALLV+ EHRYYGKS+PFG++ + L QA+ D+AE+L
Sbjct: 60 NNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELL 116
Query: 175 LYIKEKYNARHSPVIVIGGSYGGMLAAWFRLKYPHAALGALASSAPILYFDDITPQNGYY 234
++ A+ +P I GGSYGG L+A+ R KYPH GALA+SAP+L + N ++
Sbjct: 117 RALRRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFF 176
Query: 235 SIVTRDF 241
VT DF
Sbjct: 177 RDVTADF 183
>pdb|2GAE|A Chain A, Crystal Structure Of Mlta From E. Coli
Length = 346
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 9 QWLLYIFTVISSLQVSAARFNIP--RLSPTRGTILQNPEILSATISKDFQTFYYNQTLDH 66
Q+ Y VI + F P R+ P RG + EI + +S + Y N +D+
Sbjct: 98 QFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDKYILAYSNSLMDN 157
Query: 67 F--NYRPESYSTFQQRYVINFKYWGGGAG 93
F + + Y F +NF + G G
Sbjct: 158 FIMDVQGSGYIDFGDGSPLNFFSYAGKNG 186
>pdb|2AE0|X Chain X, Crystal Structure Of Mlta From Escherichia Coli Reveals A
Unique Lytic Transglycosylase Fold
Length = 345
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 9 QWLLYIFTVISSLQVSAARFNIP--RLSPTRGTILQNPEILSATISKDFQTFYYNQTLDH 66
Q+ Y VI + F P R+ P RG + EI + +S + Y N +D+
Sbjct: 97 QFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDN 156
Query: 67 F--NYRPESYSTFQQRYVINFKYWGGGAG 93
F + + Y F +NF + G G
Sbjct: 157 FIMDVQGSGYIDFGDGSPLNFFSYAGKNG 185
>pdb|2PJJ|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-1 Form
Length = 345
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 9 QWLLYIFTVISSLQVSAARFNIP--RLSPTRGTILQNPEILSATISKDFQTFYYNQTLDH 66
Q+ Y VI + F P R+ P RG + EI + +S + Y N +D+
Sbjct: 97 QFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDN 156
Query: 67 F--NYRPESYSTFQQRYVINFKYWGGGAG 93
F + + Y F +NF + G G
Sbjct: 157 FIMDVQGSGYIDFGDGSPLNFFSYAGKNG 185
>pdb|2PIC|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-2 Form
Length = 345
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 9 QWLLYIFTVISSLQVSAARFNIP--RLSPTRGTILQNPEILSATISKDFQTFYYNQTLDH 66
Q+ Y VI + F P R+ P RG + EI + +S + Y N +D+
Sbjct: 97 QFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSLMDN 156
Query: 67 F--NYRPESYSTFQQRYVINFKYWGGGAG 93
F + + Y F +NF + G G
Sbjct: 157 FIMDVQGSGYIDFGDGSPLNFFSYAGKNG 185
>pdb|1E1H|A Chain A, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase.
pdb|1E1H|C Chain C, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase
Length = 287
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 98 APIFVYLGAEESLDGDISVI----GFLTDNAARFNALLVYIEHRYYGKSI 143
+P F + G EESL+ D + + F TD A L++ EHR YG +I
Sbjct: 226 SPDFTF-GFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAEHRLYGIAI 274
>pdb|2G7P|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7P|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7Q|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7Q|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 98 APIFVYLGAEESLDGDISVI----GFLTDNAARFNALLVYIEHRYYGKSI 143
+P F + G EESL+ D + + F TD A L++ EHR YG +I
Sbjct: 188 SPDFTF-GFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAEHRLYGIAI 236
>pdb|2G7K|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7K|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7N|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 98 APIFVYLGAEESLDGDISVI----GFLTDNAARFNALLVYIEHRYYGKSI 143
+P F + G EESL+ D + + F TD A L++ EHR YG +I
Sbjct: 188 SPDFTF-GFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAEHRLYGIAI 236
>pdb|2PI8|A Chain A, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
pdb|2PI8|B Chain B, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
pdb|2PI8|C Chain C, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
pdb|2PI8|D Chain D, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
Length = 345
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 9 QWLLYIFTVISSLQVSAARFNIP--RLSPTRGTILQNPEILSATISKDFQTFYYNQTLDH 66
Q+ Y VI + F P R P RG + EI + +S + Y N D+
Sbjct: 97 QFTGYYTPVIQARHTRQGEFQYPIYRXPPKRGRLSSRAEIYAGALSDKYILAYSNSLXDN 156
Query: 67 F--NYRPESYSTFQQRYVINFKYWGGGAG 93
F + + Y F +NF + G G
Sbjct: 157 FIXDVQGSGYIDFGDGSPLNFFSYAGKNG 185
>pdb|2FX5|A Chain A, Pseudomonas Mendocina Lipase
Length = 258
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 160 YFNSAQAITDYAEILLYIKEKYNARHSPVIVIGGSYGGMLAAWFRLK 206
Y N AQ + A + ++ E+ H + GG+Y G AWFR +
Sbjct: 182 YLN-AQPVYRRANVPVFWGERRYVSHFEPVGSGGAYRGPSTAWFRFQ 227
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 98 APIFVYLGAEESLDGDISVI----GFLTDNAARFNALLVYIEHRYYGKSI 143
+P F + G EESL+ D + + F TD A L+Y HR YG +I
Sbjct: 192 SPDFTF-GFEESLEVDTNPLLGAGKFATDPAVTLAHQLIYAGHRLYGIAI 240
>pdb|3U7W|H Chain H, Crystal Structure Of Nih45-46 Fab
pdb|3U7Y|H Chain H, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 229
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 37 RGTILQNPEILSATISKDFQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWGGGA---- 92
+G + ++ S T + ++ + T +F R + Y T + Y +F++WG GA
Sbjct: 65 QGRVTMTRDVYSDTAFLELRSLTSDDTAVYFCTRGK-YCTARDYYNWDFEHWGRGAPVTV 123
Query: 93 -GADANAP-IFVYLGAEESLDGDISVIGFLTDN 123
A P +F + +S G + +G L +
Sbjct: 124 SSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,539,948
Number of Sequences: 62578
Number of extensions: 317789
Number of successful extensions: 804
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 35
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)