BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025943
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 162/221 (73%), Gaps = 7/221 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGP 173
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D +AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 174 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
+ + +LP ++ LL+MD++L + E V++ A + + V
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV 224
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 8/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGP 173
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D +AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 174 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 232
+ + +LP ++ LL+MDA+L + E V++ A + + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 243
Query: 233 G 233
G
Sbjct: 244 G 244
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 244 bits (623), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 171/241 (70%), Gaps = 8/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGP 173
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L D +AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 174 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKFLLIAVDIV 232
+ + +LP ++ LL+MDA+L + E V++ A + V + R VR+ + A ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVLL 243
Query: 233 G 233
G
Sbjct: 244 G 244
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 217 bits (553), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 158/241 (65%), Gaps = 9/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G KV+AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E +L H+ PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
+++LQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +L D+ G D
Sbjct: 127 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 232
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 233 G 233
G
Sbjct: 247 G 247
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 155/241 (64%), Gaps = 9/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G RLDGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +CSAG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 232
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 233 G 233
G
Sbjct: 247 G 247
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 213 bits (542), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 9/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGRR E+R++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ +D+F
Sbjct: 68 QRPDTAVLRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 232
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVA 246
Query: 233 G 233
G
Sbjct: 247 G 247
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 213 bits (542), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 156/241 (64%), Gaps = 9/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 232
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAEEVG 246
Query: 233 G 233
G
Sbjct: 247 G 247
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 156/241 (64%), Gaps = 9/241 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIV 232
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVE 246
Query: 233 G 233
G
Sbjct: 247 G 247
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 155/239 (64%), Gaps = 9/239 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ +K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +L D+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDI 231
V V I+P + +TLLQMD L F + ++LAI+G KAV RE K+L IA ++
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQEV 245
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 145/218 (66%), Gaps = 7/218 (3%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+S +GLRLDGR+P EMR L+ + G + +ADGSA E+G K++AAVYGPRE+ + +Q
Sbjct: 8 LISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+VR Y+MA FS +R R P DRRS EIS + ++ +E I T PR+ IDIFV+
Sbjct: 68 PDRAVVRFRYNMAPFSVDERKR-PGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVT 176
VLQAD GTR A I+AA++AL DAGI MRD+V +C+AG + +L D G DV
Sbjct: 127 VLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVP 186
Query: 177 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
+ ++P K+TLLQMD + F+ ++LA +GCK V
Sbjct: 187 LAMMPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIV 224
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 143/219 (65%), Gaps = 7/219 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGR+P EMR ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A+
Sbjct: 14 GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL L PR+ ID+F++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GTR + AA++AL DAGIPMRD++ + G + +L D G D+ V ++P
Sbjct: 133 AGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMP 192
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 220
+L +V LLQ++ + F +++A +G + + N +E
Sbjct: 193 SLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKE 231
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 152/230 (66%), Gaps = 9/230 (3%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR P ++R +R E+G ++ ADGSA+ E G T+VIAAVYGPRE + + D+A++
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y MA FST +R + P RR E+S VIR+ +EA +++ L PR+ ID++++VLQ+DG
Sbjct: 84 RCRYHMAPFSTAER-KTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDG 142
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD------SAGGPDVTVGILPT 182
GTR+A I AA+LAL DAGI MRD+V + G ++ +LD + D+ V + P+
Sbjct: 143 GTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPS 202
Query: 183 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVD 230
LDKV LLQ++ L + F ++LA +G + + N +E +K++ ++V+
Sbjct: 203 LDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVE 252
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 141/223 (63%), Gaps = 7/223 (3%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 76 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGIL 180
D G+R + AA+LAL DAGIPMRD++ + G + +L D G D+ + ++
Sbjct: 135 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMM 194
Query: 181 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 223
P+L++VTL Q++ + + F LA++G + N RE K
Sbjct: 195 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 237
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 135/218 (61%), Gaps = 7/218 (3%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R L+ E G + +ADGS+ E G K++ AVYGPRE Q + Q D+A++
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y+MA FS +R R P DRRS EIS + + + ++ PRS ID+F++VL+A+G
Sbjct: 76 RCRYNMAPFSVEERKR-PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILPT 182
GTR A I AA++AL DAGIPMRD+V +C+AG + +L D G DV V ILP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 183 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 220
++TLLQ D L FE + LA+EGC + +E
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKE 232
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 187 bits (474), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 141/234 (60%), Gaps = 8/234 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAG+ MRD+V S G ++ +L D G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 233
L + TLLQ+D + F + + LAI+G + V R+ K++ IA DI G
Sbjct: 192 NLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYMTIAEDIYG 245
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR P +MR+++ ++G V+ ADGSAV G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ T +L D+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 233
L + TLLQ+D F + + LA++G + V RE K++ IA +I G
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALKNKYMAIAEEIYG 245
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 142/234 (60%), Gaps = 8/234 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G ++ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ T +L D G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK--FLLIAVDIVG 233
L + TLLQ+D + + + LA++G + V R+ K ++ IA +I G
Sbjct: 192 NLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYMAIAEEIYG 245
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 141/219 (64%), Gaps = 10/219 (4%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
++ +GLRLDGRR E+R ++ E+G +++ADGS E G K++ V+GPRE + Q
Sbjct: 10 LITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQR 69
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+D A++R Y+MA+FS DR R P RRS EIS V R+ E I+ L P++ IDIFV+
Sbjct: 70 ADSAVIRYRYNMASFSVEDRAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVT 176
VLQAD GTR+A INA+++AL DAGIPM+ ++TSC+ G ++ +L D+ G D
Sbjct: 129 VLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFP 188
Query: 177 VGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
V + T D ++TL+QMD L + + ++L +GCK +
Sbjct: 189 VAM--TQDGEITLIQMDGNLTPDEIKQGLELVKKGCKEI 225
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 138/225 (61%), Gaps = 7/225 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ E G + +ADGSA E G K+I VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R R P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAVVKARYNMAAFSVDERKR-PGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A + AAT+AL DAGIPMRD+V C+AG ++ +L D+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEAD 187
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 219
+ + I+P ++ LLQMD + + F + + IE K ++ R
Sbjct: 188 IPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQR 232
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 135/220 (61%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G R DGR E R++ + G + ADGS+ E G+ K++ V+GPR+V K
Sbjct: 8 MVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SDTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +L D AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V
Sbjct: 187 MPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLV 226
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 141/234 (60%), Gaps = 8/234 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E I+ PRS+ID+FV++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD+V S G ++ T +L D G D+ +G +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 233
L + TLLQ+D + F + LA+ G + V R+ K++ IA +I G
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYMSIAEEIYG 245
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 147/236 (62%), Gaps = 12/236 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGR+ E+R ++ E + +ADGS EMG KVIAAV+GPREV + Q +A
Sbjct: 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R R P DRRS EIS V ++ EA I+ L PRS IDIFV+VLQA
Sbjct: 74 IIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGIL 180
D G+R+AC+NAA++AL DAG+PM+ ++TS + G + +L D+ G D+ L
Sbjct: 133 DAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFL 192
Query: 181 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE--VRKFLLIAVDI 231
++ + LLQMD ++ + + ++LA +G + RE +R+++ + ++
Sbjct: 193 IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEM 248
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR+ E+R ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A
Sbjct: 14 GLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKAS 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL +L PR+ IDIF++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GTR + AA++AL DAGIPMRD++ + G + + +L D G D+ + +LP
Sbjct: 133 AGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLP 192
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRK 223
+L +V LLQ++ + + F +LA +G ++ +E K
Sbjct: 193 SLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 136/226 (60%), Gaps = 7/226 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ + G + +ADGSA E G K++ VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R R P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAIVKARYNMAAFSVDERKR-PGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPD 174
++VLQAD GTR A + AAT+AL DAG+PMRD+V C+AG ++ +L D+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEAD 187
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 220
+ + I+P + L+QMD + + M + E K ++ RE
Sbjct: 188 IPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQRE 233
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 132/220 (60%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E + S+
Sbjct: 1 MSIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESK-ASK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STEIS ++ + E+ ILT PRSQIDIF
Sbjct: 60 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGG------PD 174
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G + + P++D P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPR 179
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADV 219
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 136/234 (58%), Gaps = 8/234 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E +L PRS+ID+F++++QAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRD------IVTSCSAGYLNSTPLLDSAGGPDVTVGILP 181
G TR A + AA+LAL DAGI MRD + L+ L D+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMP 191
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV--RKFLLIAVDIVG 233
L + LLQ+D F + LA++G + V R+ K++ IA +I G
Sbjct: 192 NLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALKNKYMSIAEEIYG 245
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 7/220 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGG------PD 174
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++D P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADV 219
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR P ++R +R ++G + ADGSA+ E G T+V+AAVYGPRE + + D+A
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y MA FST +R + P RR E+S V+R+ +E +L PR+ ID+F++VLQA
Sbjct: 74 ALRVRYHMAPFSTDER-KSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST------PLLDSAGGPDVTVGIL 180
DGGTR+A + AA+LAL DAGIPMR +V + G + L D G D+ V
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 181 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VRKFLL 226
P + ++TLLQ++ L F + +A+ V +E +RK L
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYL 239
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 139/213 (65%), Gaps = 7/213 (3%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ +E R++ G + A+GSA E G+ K++A ++GPR+V K ++ +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y M+ FS +R +KP RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRCRYHMSPFSVSER-KKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL------DSAGGPDVTVGILP 181
GG+R A + AA++AL DAGIPMRD+V++C+AG + T +L D AG D+ VG +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 182 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 214
LD+VTL+Q+D L + + +AI+GCK V
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQV 226
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 130/224 (58%), Gaps = 5/224 (2%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S EGLR DGRR EMR + IG +GSA E+GNTKV+ V GP E KS+
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI ++
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD-----SAGGPDV 175
+ VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLD + +
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSWL 183
Query: 176 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 219
TV +L + KV +Q++ + + E VM +AI G + + N ++
Sbjct: 184 TVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQ 227
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 136/232 (58%), Gaps = 8/232 (3%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGGPD---- 174
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD+ +
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 175 -VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI-REVRKF 224
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E+RK
Sbjct: 184 TVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 19/231 (8%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G+R +G ++R + A G V++A GSA E GNTK+I +VYGP+E + + +
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C++ +A FS R +G ++S + +++ + H PRSQID+ V VL
Sbjct: 88 TGRLVCDFRLAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMVL 146
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGGPD---------- 174
+ DG + + A++AL DAGI M DIV C+ + L+D + +
Sbjct: 147 ENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGD 206
Query: 175 ----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 221
VT+ +LP L++V+ L D ++ +T + M+ ++GC + +++
Sbjct: 207 NQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQA 257
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 14/223 (6%)
Query: 4 VSPEGLRLDGRR---PTEMRQLRAEIGNVAKADGSAVFEMGN--TKVIAAVYGPREVQNK 58
+S EG + GRR P+E R + G +++A GSA E G+ TKV+ AV+GPRE
Sbjct: 22 LSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMG 81
Query: 59 SQQMSDQALVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ + + C+ A FS G + L +++++E + PR+++
Sbjct: 82 GERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEV 141
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL--------DS 169
++V VL+ G A ++ A+LAL DAGI M D+ C LL ++
Sbjct: 142 IVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEA 201
Query: 170 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 212
G +++ +LPTL++V+ L + + E+ ++L +EGC+
Sbjct: 202 GSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQ 244
>sp|B2V900|PNP_SULSY Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=pnp PE=3 SV=1
Length = 703
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY--GPREVQNKSQQMSD 64
E +R+DGR+P E+R + ++G + GSA+F G T+ V P E Q + +
Sbjct: 309 ENIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAG 368
Query: 65 QALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ L R Y+ FSTG+ RR + + +E I + I +
Sbjct: 369 ETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYVIRVVSD 428
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP--------LLDSAGGPD 174
+L+++G T A + +LAL DAG+PM+ V + G + S L D D
Sbjct: 429 ILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLGD 488
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 218
+ + T D VT +QMD K+ T E ++Q A+E + NYI
Sbjct: 489 MDFKVAGTRDGVTSIQMDIKVKGLTRE-ILQKALEQAREGRNYI 531
>sp|B1VVV6|RNPH_STRGG Ribonuclease PH OS=Streptomyces griseus subsp. griseus (strain JCM
4626 / NBRC 13350) GN=rph PE=3 SV=1
Length = 245
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 18/176 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM ST GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLD 168
ADGGTR+A I A +AL DA P+ D V + S G ++ TPLLD
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLD 177
>sp|Q8BTW3|EXOS6_MOUSE Exosome complex component MTR3 OS=Mus musculus GN=Exosc6 PE=1 SV=1
Length = 273
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 23/221 (10%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDR-RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ + C++ A FS G R R P+G E+ L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSA 149
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---------AGYLNSTPLLDSAGG 172
+L+ G +A + AA LAL DAG+ M D+V C L+ T L +
Sbjct: 150 LLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSA 209
Query: 173 PDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 212
+TV ++P L++V LL T ++ D ++L +EGC+
Sbjct: 210 AGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQ 250
>sp|A5G3S1|RNPH_GEOUR Ribonuclease PH OS=Geobacter uraniireducens (strain Rf4) GN=rph
PE=3 SV=1
Length = 238
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 24/179 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R+++ + A+GS + E G+TKVI A+V G P ++ K
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + +L+ + I
Sbjct: 57 -GWVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLID 115
Query: 121 VQVLQADGGTRSACINAATLALQD-----------AGIPMRDIVTSCSAGYLNSTPLLD 168
V+QADGGTR+A I A +AL D A +P+++ V + S G ++ TPLLD
Sbjct: 116 CDVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLD 174
>sp|Q5RKV6|EXOS6_HUMAN Exosome complex component MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1
Length = 272
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 22/220 (10%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCS---------AGYLNSTPLLDSAGGP 173
+L+ G +A + AA LAL DAG+ M D+V C L+ T L +
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA 209
Query: 174 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCK 212
+TV ++P L++V LL T ++ + ++L +EGC+
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQ 249
>sp|Q6AEK9|RNPH_LEIXX Ribonuclease PH OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=rph PE=3 SV=1
Length = 251
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 26/188 (13%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R DGR ++R + E KA+GSA+ G T+V+ PR + K +
Sbjct: 5 IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGR---- 60
Query: 65 QALVRCEYSMANFSTGDRMRKP--KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY+M ST DRM + KG R+ EIS +I +++ A + + + I +
Sbjct: 61 -GWVTAEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLD 119
Query: 121 VQVLQADGGTRSACINAATLALQDA-------------GIPMRDIVTSCSAGYLNSTPLL 167
VLQADGGTR+A I A +AL DA P+ D V++ S G ++ +P+L
Sbjct: 120 CDVLQADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPML 179
Query: 168 DSAGGPDV 175
D A DV
Sbjct: 180 DLAYTEDV 187
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 16/137 (11%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQALVRCEYSMA 75
+R E +++ DGSA F G+T V+A VYGP EV+ + + + + ++R + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 76 NFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACI 135
+ R R +IR T EA +L L PR+ I + +QV+ G + C+
Sbjct: 88 GVAEKSRER-------------LIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
Query: 136 NAATLALQDAGIPMRDI 152
NAA +AL DAG+PMR +
Sbjct: 135 NAACMALVDAGVPMRAL 151
>sp|Q9S2H7|RNPH_STRCO Ribonuclease PH OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rph PE=3 SV=1
Length = 245
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 22/178 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGR P ++R + E G A+GS + G+TKV+ A+V E + ++ S +
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVT---EGVPRWRKGSGEGW 59
Query: 68 VRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M A + GDR K + R+ EIS +I +++ A I + + + + V
Sbjct: 60 VTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDV 119
Query: 124 LQADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLD 168
LQADGGTR+A I A +AL DA P+ V++ S G ++ TPLLD
Sbjct: 120 LQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLD 177
>sp|Q82D17|RNPH_STRAW Ribonuclease PH OS=Streptomyces avermitilis (strain ATCC 31267 /
DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rph PE=3 SV=1
Length = 244
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EYSM A + GDR + K R+ EIS +I +++ A I + + I + VLQ
Sbjct: 62 AEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQ 121
Query: 126 ADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLD 168
ADGGTR+A I A +AL DA P+ V++ S G + PLLD
Sbjct: 122 ADGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLD 177
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 25/157 (15%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA----LVRCEYSM 74
+R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A ++R + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKATLEVILRPKIGL 86
Query: 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSAC 134
+ R R ++R T EA +L L PR+ I + +QV+ G + C
Sbjct: 87 PGVAEKSRER-------------LVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 135 INAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAG 171
+NAA +AL DAG+PMR + + T LDS G
Sbjct: 134 LNAACMALVDAGVPMRAL-------FCGVTCALDSDG 163
>sp|B9EBG0|PNP_MACCJ Polyribonucleotide nucleotidyltransferase OS=Macrococcus
caseolyticus (strain JCSC5402) GN=pnp PE=3 SV=1
Length = 703
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 18/232 (7%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA----AVYGPREVQNK 58
++ E +R DGRRP E+R L +E+G + + GS +F G T+ ++ G ++ +
Sbjct: 308 LITEEKVRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGEHQIID- 366
Query: 59 SQQMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116
+ ++ Y+ NFS G+ +R P G R +L R ++ P +
Sbjct: 367 GLGVEEEKRYMHHYNFPNFSVGETGPIRAP-GRREIGHGALGERALLQVIPDEKEFPYT- 424
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDSAGG 172
I + +VL+++G + A I +TLAL DAG+P++ V + G + N T L D G
Sbjct: 425 IRVVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSDIQGM 484
Query: 173 P----DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 220
D+ + T + +T +QMD K+ T ED+++ A+E + +I E
Sbjct: 485 EDALGDMDFKVAGTKEGITAIQMDIKINGLT-EDILREALEQARVGRLHIME 535
>sp|B8I1A8|RNPH_CLOCE Ribonuclease PH OS=Clostridium cellulolyticum (strain ATCC 35319 /
DSM 5812 / JCM 6584 / H10) GN=rph PE=3 SV=1
Length = 240
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + V
Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I I V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLD----S 169
QADGGTR+A I + +AL DA +P+ V + S G +N LLD
Sbjct: 121 QADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEELLDLCYIE 180
Query: 170 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTF 200
+V + ++ T DK +++ A ++F
Sbjct: 181 DSNAEVDMNVIKT-DKGEFIEIQATGEKSSF 210
>sp|C1DTW6|PNP_SULAA Polyribonucleotide nucleotidyltransferase OS=Sulfurihydrogenibium
azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=pnp
PE=3 SV=1
Length = 707
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY--GPREVQNKSQQMSD 64
EG+R+DGR+P E+R + ++G + GSA+F G T+ V E Q + +
Sbjct: 311 EGIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAG 370
Query: 65 QALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ + R Y+ FSTG+ RR + + +E I I +
Sbjct: 371 EVMKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNLAERALEPLIPPEEEFPYAIRVVSD 430
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--------STPLLDSAGGPD 174
+L+++G T A + +LAL DAG+PM+ V + G + S L D D
Sbjct: 431 ILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAEDKFVILSDILGDEDHLGD 490
Query: 175 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 218
+ + T D VT +QMD K+ T E +++ A++ + NYI
Sbjct: 491 MDFKVAGTRDGVTSIQMDIKVKGLTKE-ILEKALQQARDGRNYI 533
>sp|B5YFY8|RNPH_THEYD Ribonuclease PH OS=Thermodesulfovibrio yellowstonii (strain ATCC
51303 / DSM 11347 / YP87) GN=rph PE=3 SV=1
Length = 236
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 22/186 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+ E+R ++ E + ADGS + E+GNT+VI ++NK + DQ
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTA----SIENKVPPFLKDQKK 56
Query: 66 ALVRCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM R+ R R+ EI +I +T+ A + + I I
Sbjct: 57 GWITAEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDC 116
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSAGGPDVTVGIL- 180
V++ADGGTR+A I +AL +A + + +AG + P+ DS ++VGI+
Sbjct: 117 DVIEADGGTRTASITGGYIALVEA------VKKAMNAGMITENPIKDSIAA--ISVGIVL 168
Query: 181 --PTLD 184
P LD
Sbjct: 169 GEPRLD 174
>sp|A3DCH7|PNP_CLOTH Polyribonucleotide nucleotidyltransferase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=pnp PE=3
SV=1
Length = 700
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV----YGPREVQN 57
E++ EG R+DGRR E+R L AE+G + + GS +F G T+V+++V G ++ +
Sbjct: 304 EYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILD 363
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ + Y+ FS G+ RR + + +E I + I
Sbjct: 364 GIDTEETKRYMH-HYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFPYTI 422
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG-------------YLNST 164
+ +VL ++G T + +TLAL DAG+P++ V SAG +++
Sbjct: 423 RVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFMDIQ 482
Query: 165 PLLDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 218
+ D G D+ + T D +T +Q+D K+ T E++++ A E + YI
Sbjct: 483 GIEDFFG--DMDFKVAGTKDGITAIQVDIKIDGLT-EEIIKQAFELTRKGRLYI 533
>sp|B3EU51|PNP_AMOA5 Polyribonucleotide nucleotidyltransferase OS=Amoebophilus asiaticus
(strain 5a2) GN=pnp PE=3 SV=1
Length = 713
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
EGLRLDGR+ E+R + +EI + A GS++F G T+ + V ++ +Q+ D+A
Sbjct: 318 EGLRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKL---DEQLIDRA 374
Query: 67 LVR------CEYSMANFSTGD-RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
L+ Y+ +FSTG+ + + G R L +R + L P + I I
Sbjct: 375 LLNGYSRFMLHYNFPSFSTGEVKFNRGPGRREIGHGHLAMRALKKVLPLDTENPYT-IRI 433
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN----------STPLLDS 169
+L+++G + A + A +LAL DAGI +R V+ + G L S L D
Sbjct: 434 VSDILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQTGKHAILSDILGDE 493
Query: 170 AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKA 213
D+ + T +T QMD K+ T + ++Q A+E KA
Sbjct: 494 DALGDMDFKVAGTAKGITACQMDIKVSGLTPQ-LLQKALEQAKA 536
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 18 EMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMAN 76
E R++ E G +AK ADGS V MG+T ++A V +E+ + + +++ A
Sbjct: 14 EHREITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAG 73
Query: 77 FSTGDRMRKPK--GDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
G +R+ GD IS ++ + + + +QI+IF+
Sbjct: 74 KIPGGFLRREGKLGDHEVL-ISRLVDRAIRPLFPDNYKHETQINIFL 119
>sp|Q11B42|RNPH_MESSB Ribonuclease PH OS=Mesorhizobium sp. (strain BNC1) GN=rph PE=3 SV=1
Length = 238
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+P EMR + E G A+GS + G+T V+ +V + S + V
Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI ++ +++ + I + QI + VL
Sbjct: 60 TAEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVL 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLD 168
QADGGTR+A I +AL D M +D V + S G + TP+LD
Sbjct: 120 QADGGTRTAAITGGFVALHDCLSWMQARQMVTVERVLKDHVAAISCGIYDGTPVLD 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,842,507
Number of Sequences: 539616
Number of extensions: 3299575
Number of successful extensions: 10854
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 7812
Number of HSP's gapped (non-prelim): 1688
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)