Query 025943
Match_columns 246
No_of_seqs 145 out of 1255
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnr_B Probable exosome comple 100.0 5.6E-53 1.9E-57 362.5 29.2 224 1-225 8-237 (240)
2 2nn6_B Exosome complex exonucl 100.0 1.1E-52 3.8E-57 362.5 28.6 226 1-226 8-240 (249)
3 2po1_A Probable exosome comple 100.0 4.6E-52 1.6E-56 358.6 28.9 225 1-226 8-238 (249)
4 2wp8_B Exosome complex compone 100.0 2.4E-51 8.1E-56 353.6 28.5 226 1-226 4-236 (246)
5 2je6_B RRP41, exosome complex 100.0 2.4E-51 8.2E-56 354.4 28.1 227 2-229 13-245 (250)
6 3m7n_D Probable exosome comple 100.0 2E-51 6.9E-56 355.9 26.3 222 2-225 10-240 (258)
7 2nn6_F MTR3, exosome component 100.0 1.1E-48 3.9E-53 341.5 19.4 224 2-226 19-263 (272)
8 3dd6_A Ribonuclease PH; exorib 100.0 8.7E-47 3E-51 326.4 26.4 218 6-225 8-250 (255)
9 2nn6_D Exosome complex exonucl 100.0 3E-46 1E-50 320.1 26.8 211 5-225 12-233 (237)
10 3b4t_A Ribonuclease PH; RNAse, 100.0 4E-46 1.4E-50 323.8 26.6 218 6-225 3-245 (262)
11 1oys_A Ribonuclease PH; transf 100.0 1.1E-46 3.8E-51 324.3 21.2 215 9-225 1-240 (245)
12 1udn_A Ribonuclease PH, RNAse 100.0 1.1E-45 3.8E-50 319.8 26.1 214 9-224 1-238 (255)
13 1r6l_A Ribonuclease PH; beta-a 100.0 1.6E-45 5.4E-50 315.9 25.6 213 9-223 2-238 (239)
14 2po1_B Probable exosome comple 100.0 9.3E-45 3.2E-49 317.5 27.4 217 5-226 22-276 (277)
15 3m7n_G Probable exosome comple 100.0 4.6E-44 1.6E-48 310.3 26.5 211 6-220 19-258 (259)
16 2wnr_A Probable exosome comple 100.0 6.7E-44 2.3E-48 311.1 27.0 214 5-223 20-270 (271)
17 2je6_A RRP42, exosome complex 100.0 4.2E-44 1.4E-48 313.3 25.6 215 4-223 24-276 (277)
18 3hkm_A OS03G0854200 protein; R 100.0 2.8E-44 9.6E-49 309.1 23.7 207 7-225 2-233 (246)
19 2nn6_C Exosome complex exonucl 100.0 2E-44 6.8E-49 315.4 21.0 216 5-224 20-274 (278)
20 3gme_A Polyribonucleotide nucl 100.0 3.6E-43 1.2E-47 329.5 22.3 220 2-224 307-543 (549)
21 2nn6_A Polymyositis/scleroderm 100.0 2.9E-42 9.8E-47 310.8 23.9 218 5-229 35-293 (358)
22 2nn6_E Exosome complex exonucl 100.0 2.5E-42 8.7E-47 305.9 21.5 218 6-227 33-293 (305)
23 4aid_A Polyribonucleotide nucl 100.0 3.4E-42 1.1E-46 331.7 23.4 221 2-225 323-560 (726)
24 2wp8_A Exosome complex compone 100.0 5.2E-42 1.8E-46 303.9 22.8 218 5-229 19-290 (305)
25 3u1k_A Polyribonucleotide nucl 100.0 9.8E-42 3.4E-46 325.4 24.4 220 2-225 311-557 (630)
26 1e3p_A Guanosine pentaphosphat 100.0 1.7E-41 5.8E-46 329.1 23.9 221 2-225 348-589 (757)
27 3cdi_A Polynucleotide phosphor 100.0 1.9E-40 6.4E-45 320.7 24.6 221 2-225 313-550 (723)
28 3krn_A Protein C14A4.5, confir 100.0 2.5E-42 8.4E-47 293.1 -0.3 198 16-225 2-208 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 1.3E-32 4.5E-37 262.6 23.9 209 18-234 13-237 (630)
30 3gme_A Polyribonucleotide nucl 100.0 5.2E-28 1.8E-32 226.9 25.5 208 18-233 12-235 (549)
31 4aid_A Polyribonucleotide nucl 100.0 2E-27 6.8E-32 229.1 25.9 208 18-233 26-249 (726)
32 1e3p_A Guanosine pentaphosphat 100.0 3.4E-27 1.2E-31 229.0 25.3 209 19-233 36-276 (757)
33 3cdi_A Polynucleotide phosphor 100.0 4.7E-27 1.6E-31 227.3 23.3 206 20-233 20-241 (723)
34 1ybx_A Conserved hypothetical 40.4 1.1E+02 0.0039 23.0 7.3 61 170-231 73-138 (143)
35 2k9i_A Plasmid PRN1, complete 40.3 25 0.00086 21.2 3.1 35 194-228 15-49 (55)
36 1xpp_A TA1416, DNA-directed RN 32.8 1.3E+02 0.0046 21.7 6.4 43 184-226 62-104 (115)
37 2kel_A SVTR protein, uncharact 28.5 26 0.00088 22.1 1.6 35 195-229 20-54 (56)
38 2ba3_A NIKA; dimer, bacterial 27.5 39 0.0013 20.3 2.3 29 194-222 21-49 (51)
39 2cpg_A REPA protein, transcrip 22.1 66 0.0023 18.4 2.6 34 194-227 8-41 (45)
40 1nla_A Transcriptional repress 20.1 1.1E+02 0.0039 19.7 3.5 37 194-230 13-49 (64)
No 1
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.6e-53 Score=362.50 Aligned_cols=224 Identities=43% Similarity=0.735 Sum_probs=204.9
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcc
Q 025943 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (246)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~ 80 (246)
||+++++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+||.+..++..+.|++|.++++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~ 87 (240)
T 2wnr_B 8 DQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVE 87 (240)
T ss_dssp -------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSS
T ss_pred eEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcC
Confidence 78999999999999999999999999999999999999999999999999998877666678899999999999999998
Q ss_pred ccccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEE
Q 025943 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (246)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~ 160 (246)
+++ .+++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+|+||+++|+++|+|+
T Consensus 88 ~~~-~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~ 166 (240)
T 2wnr_B 88 ERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGK 166 (240)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred Ccc-CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEE
Confidence 765 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeecC------CCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 161 LNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 225 (246)
Q Consensus 161 ~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 225 (246)
+++.+++|+ .++++++|+++++.++|++++++|.++.+++.+++++|+++|++|.+.+++++++.
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 167 VGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp SSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999993 46788999877899999999999999999999999999999999999999998754
No 2
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.1e-52 Score=362.50 Aligned_cols=226 Identities=52% Similarity=0.888 Sum_probs=209.4
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCcccccc-ccCCCCceEEEEEEeecCCCc
Q 025943 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQQMSDQALVRCEYSMANFST 79 (246)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~-~~~~p~~g~l~v~v~~~~~s~ 79 (246)
||||++++.|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+||.+++.+ ..+.|++|.++++|+++|+++
T Consensus 8 ~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~ 87 (249)
T 2nn6_B 8 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFST 87 (249)
T ss_dssp ---CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTS
T ss_pred hhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcc
Confidence 7899999999999999999999999999999999999999999999999999876543 235689999999999999999
Q ss_pred cccccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEE
Q 025943 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159 (246)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~ 159 (246)
+++.+++++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g 167 (249)
T 2nn6_B 88 GERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAG 167 (249)
T ss_dssp SSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEE
T ss_pred cccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEE
Confidence 88776778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeec------CCCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 160 YLNSTPLLD------SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 226 (246)
Q Consensus 160 ~~~~~~lvD------~~~~~~ltv~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~ 226 (246)
++++.+++| +.++++++|+++++.++|++++++|+++.+++.+++++|+++|++|.+.+++++++..
T Consensus 168 ~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 240 (249)
T 2nn6_B 168 FVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 240 (249)
T ss_dssp EETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 3467899997767899999999999999999999999999999999999999998873
No 3
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=4.6e-52 Score=358.62 Aligned_cols=225 Identities=47% Similarity=0.759 Sum_probs=211.8
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcc
Q 025943 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (246)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~ 80 (246)
||++++++.|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+||.++..+..+.|++|.++++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~ 87 (249)
T 2po1_A 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVE 87 (249)
T ss_dssp -CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSS
T ss_pred eEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccc
Confidence 68999999999999999999999999999999999999999999999999998887666678999999999999999998
Q ss_pred ccccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEE
Q 025943 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (246)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~ 160 (246)
+++ .+.+++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|+++|+++||+|+|||++++|+++|+|+
T Consensus 88 ~~~-~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 166 (249)
T 2po1_A 88 ERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK 166 (249)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred ccc-CCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEE
Confidence 764 4568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeecC------CCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 161 LNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 226 (246)
Q Consensus 161 ~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~ 226 (246)
+++.+++|+ .++++++|+++++.++|++++++|.++.+++.++++.|.+++++|.+.+++++++..
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 238 (249)
T 2po1_A 167 IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKY 238 (249)
T ss_dssp ETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999993 467889998778899999999999999999999999999999999999999998873
No 4
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-51 Score=353.61 Aligned_cols=226 Identities=38% Similarity=0.602 Sum_probs=198.0
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEECCCCCC-CeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCc
Q 025943 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79 (246)
Q Consensus 1 ~e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a-~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~ 79 (246)
|||+++++.|+|||+++|+|++.+++|+++++ +|||++++|+|+|+|+|+||.++..+..+.|++|.++|+|+++|+++
T Consensus 4 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~ 83 (246)
T 2wp8_B 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSK 83 (246)
T ss_dssp CCSSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----
T ss_pred hhhhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccc
Confidence 79999999999999999999999999999999 99999999999999999999886555556789999999999999999
Q ss_pred cccccC-CCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEE
Q 025943 80 GDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (246)
Q Consensus 80 ~~~~~~-~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~ 158 (246)
+++.++ +++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||.|+||||+++|+++|+
T Consensus 84 ~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~ 163 (246)
T 2wp8_B 84 FERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISV 163 (246)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEE
T ss_pred ccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEE
Confidence 886554 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCceeecCC-----CCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 159 GYLNSTPLLDSA-----GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 226 (246)
Q Consensus 159 ~~~~~~~lvD~~-----~~~~ltv~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~ 226 (246)
|++++.+++|+. ++++++|+++++.++|+++++.|+++.+++.++++.|++++++|.+.+++++++..
T Consensus 164 g~~~~~~l~Dp~~~Ee~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 236 (246)
T 2wp8_B 164 GLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHA 236 (246)
T ss_dssp EEETTEEESSCCHHHHHHSEEEEEEEETTSSCEEEEEECSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEECCCchhhccCceEEEEEeCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999943 45678987778999999999999999999999999999999999999999998873
No 5
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=2.4e-51 Score=354.36 Aligned_cols=227 Identities=41% Similarity=0.748 Sum_probs=212.3
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccc
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~ 81 (246)
||+++++.|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+||.+...+....|++|.++|+|+++|+++++
T Consensus 13 ~~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 92 (250)
T 2je6_B 13 KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDE 92 (250)
T ss_dssp CSBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSS
T ss_pred ceecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCC
Confidence 78999999999999999999999999999999999999999999999999988776666778999999999999999988
Q ss_pred cccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEEe
Q 025943 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (246)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~ 161 (246)
++ .+++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||.++|||++++|+++|++++
T Consensus 93 ~~-~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~ 171 (250)
T 2je6_B 93 RK-NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA 171 (250)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE
T ss_pred cc-CCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE
Confidence 75 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecC------CCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025943 162 NSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 229 (246)
Q Consensus 162 ~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~ 229 (246)
++.+++|+ .++++++|+++++.++|+++++.|.++.+++.++++.|+++++++.+.+++++++....+
T Consensus 172 ~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 245 (250)
T 2je6_B 172 DGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 245 (250)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--
T ss_pred CCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999994 367889998778899999999999999999999999999999999999999998774433
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=2e-51 Score=355.93 Aligned_cols=222 Identities=43% Similarity=0.704 Sum_probs=207.7
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccc
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~ 81 (246)
++|. +|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.++..+..+.|++|.++++|++.|+++++
T Consensus 10 ~~i~-~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~ 88 (258)
T 3m7n_D 10 KLIV-DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE 88 (258)
T ss_dssp CSEE-TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS
T ss_pred HHHh-cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc
Confidence 5666 999999999999999999999999999999999999999999999998877666789999999999999999877
Q ss_pred cccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEEe
Q 025943 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (246)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~ 161 (246)
++ ++++++++++++++|+++|+++|+++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|+++|+|++
T Consensus 89 r~-~~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i 167 (258)
T 3m7n_D 89 RK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA 167 (258)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE
T ss_pred cc-CCCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE
Confidence 54 45788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecC------CCCCeEEEEEcCCC---CcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 162 NSTPLLDS------AGGPDVTVGILPTL---DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 225 (246)
Q Consensus 162 ~~~~lvD~------~~~~~ltv~~~~~~---~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 225 (246)
++.+++|+ .++++++|++++.. ++|+++|++|+++.+++.+++++|+++|++|.+.+++++++.
T Consensus 168 ~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (258)
T 3m7n_D 168 DGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRR 240 (258)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999994 36788999766777 999999999999999999999999999999999999998875
No 7
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.1e-48 Score=341.47 Aligned_cols=224 Identities=28% Similarity=0.469 Sum_probs=195.2
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccC-----------CCCceEEEE
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-----------MSDQALVRC 70 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~-----------~p~~g~l~v 70 (246)
+|+.+++.|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+++...+. .+++|.++|
T Consensus 19 ~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 98 (272)
T 2nn6_F 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLC 98 (272)
T ss_dssp ----------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEE
T ss_pred ccccccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEE
Confidence 577789999999999999999999999999999999999999999999999887654221 468899999
Q ss_pred EEeecCCCccccccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCc
Q 025943 71 EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMR 150 (246)
Q Consensus 71 ~v~~~~~s~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~ 150 (246)
+|.+.|+++++++ .+++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+|||++
T Consensus 99 ~~~~~p~a~~~~~-~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~ 177 (272)
T 2nn6_F 99 DFRRAPFAGRRRR-APPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMY 177 (272)
T ss_dssp EEEECTTSSSSCC-CSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBS
T ss_pred EEEecCCCcCCcc-CCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccc
Confidence 9999999998754 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEE---ecCceeecC------CCCCeEEEEEcCCCCcEEEEEeecCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025943 151 DIVTSCSAGY---LNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDAKLPT-NTFEDVMQLAIEGCKAVANYIRE 220 (246)
Q Consensus 151 ~~~~avs~~~---~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~~~~-~~l~~~l~~A~~~~~~i~~~i~~ 220 (246)
++++++++++ .++.+++|+ .++++++|+++++.++|+++|++|.++. +++.++++.|.+++++|.+.+++
T Consensus 178 ~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 257 (272)
T 2nn6_F 178 DLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQ 257 (272)
T ss_dssp SCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECCSSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 788899993 3567899988899999999999999999 99999999999999999999999
Q ss_pred HHHHHH
Q 025943 221 VRKFLL 226 (246)
Q Consensus 221 ~l~~~~ 226 (246)
++++..
T Consensus 258 ~l~~~~ 263 (272)
T 2nn6_F 258 SLVRAA 263 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 8
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=8.7e-47 Score=326.45 Aligned_cols=218 Identities=26% Similarity=0.353 Sum_probs=197.9
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccccc-
Q 025943 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR- 84 (246)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~- 84 (246)
.+..|.|||+++|+|++.+++|++++++|||++++|+|+|+|+|++|.+.+ ++...|++|.++++|++.|+++.++.+
T Consensus 8 ~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~P~a~~~~~~R 86 (255)
T 3dd6_A 8 HHHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP-PFMRGEGKGWVTAEYAMIPRATEQRTIR 86 (255)
T ss_dssp ---CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCC-GGGTTSSCCEEEEEEEECTTSSSSCCCC
T ss_pred ccccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCC-CCCCCCCceEEEEEEEECCCcccccccc
Confidence 467899999999999999999999999999999999999999999987643 445678999999999999999987642
Q ss_pred ---CCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhC-----------CCCCc
Q 025943 85 ---KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMR 150 (246)
Q Consensus 85 ---~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a-----------~Ip~~ 150 (246)
+|++++++++++++|+|+|+++++++.||+|+|+|+++||++|||+++|+++|+++||.++ +|||+
T Consensus 87 e~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~ 166 (255)
T 3dd6_A 87 ESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVK 166 (255)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCcc
Confidence 2678999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CceeEEEEEEecCcee-ecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 151 DIVTSCSAGYLNSTPL-LDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 220 (246)
Q Consensus 151 ~~~~avs~~~~~~~~l-vD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~ 220 (246)
++|+++|+|++++.++ +|+ .++.+++|+ ++..++|+++|+.| +++.+++.+++++|.+.+++|.+.+++
T Consensus 167 ~~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va-~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 245 (255)
T 3dd6_A 167 DYLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVI-MTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKE 245 (255)
T ss_dssp SCEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEE-EETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEE-EcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 994 356788985 68899999999975 599999999999999999999999999
Q ss_pred HHHHH
Q 025943 221 VRKFL 225 (246)
Q Consensus 221 ~l~~~ 225 (246)
++++.
T Consensus 246 ~l~~~ 250 (255)
T 3dd6_A 246 ALGDI 250 (255)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 98765
No 9
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3e-46 Score=320.14 Aligned_cols=211 Identities=26% Similarity=0.379 Sum_probs=177.8
Q ss_pred CCCCCCCCCCCCC----CCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcc
Q 025943 5 SPEGLRLDGRRPT----EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (246)
Q Consensus 5 ~~~~~R~DGR~~~----e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~ 80 (246)
+.++.|+|||+++ |+|++.+++|++++++|||++++|+|+|+|+|+||.+++. ..+.|++|.++++|. |++
T Consensus 12 ~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~-~~~~~~~g~l~~~~~--p~~-- 86 (237)
T 2nn6_D 12 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKV-SKEIFNKATLEVILR--PKI-- 86 (237)
T ss_dssp ---------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC-------CCEEEEEEEE--CSS--
T ss_pred CccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccc-cccCCCcEEEEEEec--CCC--
Confidence 4578999999999 9999999999999999999999999999999999988653 346789999888775 653
Q ss_pred ccccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEE
Q 025943 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (246)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~ 160 (246)
|++++++++++++|+++|++.++++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|+++|+|+
T Consensus 87 -----g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 161 (237)
T 2nn6_D 87 -----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACAL 161 (237)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEE
T ss_pred -----CCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEE
Confidence 356788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-cCceeecC------CCCCeEEEEEcCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 161 L-NSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 225 (246)
Q Consensus 161 ~-~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 225 (246)
+ ++.+++|+ .+.+++++++.++.++|+++++.|+++.+++.+++++|++++++|.+.+++++++.
T Consensus 162 ~~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 162 DSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp CTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 68899993 35688999877777799999999999999999999999999999999999998875
No 10
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4e-46 Score=323.76 Aligned_cols=218 Identities=26% Similarity=0.364 Sum_probs=196.5
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccccccC
Q 025943 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (246)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~~ 85 (246)
..|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|++|.+.+.. ...|++|.++|+|++.|++++++.++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~v~~~~~p~a~~~~~~R 81 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRW-RKATGLGWLTAEYAMLPSATHSRSDR 81 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC-----CCSCCEEEEEEEECGGGSSSCCCC
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCc-cCCCCceEEEEEEEeCCCcccccccc
Confidence 46899999999999999999999999999999999999999999998764432 23378999999999999998876432
Q ss_pred ----CCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhC------------CCCC
Q 025943 86 ----PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA------------GIPM 149 (246)
Q Consensus 86 ----~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a------------~Ip~ 149 (246)
|++++++++++++|+++|+++++++.||+|+|+|+++||++|||+++|++||+++||+++ +|||
T Consensus 82 e~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~ 161 (262)
T 3b4t_A 82 ESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPL 161 (262)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCB
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcc
Confidence 678999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCceeEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 150 RDIVTSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 220 (246)
Q Consensus 150 ~~~~~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~ 220 (246)
+++|+++|++++++.+++|+ .++++++|+ ++.+++|+++++.| .++.+++.+++++|++++++|.+.+++
T Consensus 162 ~~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va-~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 240 (262)
T 3b4t_A 162 SCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVV-ATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRD 240 (262)
T ss_dssp CSCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEE-EETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEEEECCEEEECCCHHHHhccCceEEEE-EcCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999993 467789996 47788999999986 699999999999999999999999999
Q ss_pred HHHHH
Q 025943 221 VRKFL 225 (246)
Q Consensus 221 ~l~~~ 225 (246)
++++.
T Consensus 241 ~l~~~ 245 (262)
T 3b4t_A 241 ALALP 245 (262)
T ss_dssp HHTSC
T ss_pred HHhcc
Confidence 98754
No 11
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=1.1e-46 Score=324.28 Aligned_cols=215 Identities=27% Similarity=0.337 Sum_probs=178.4
Q ss_pred CCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccccc----
Q 025943 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (246)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~---- 84 (246)
.|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|++|.+.+. ....|++|.++++|+++|++++++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~ 79 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPP-FLRGGGKGWITAEYSMLPQATNQQTIQESS 79 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCG-GGTTSCCCEEEEEEEC--------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCC-ccCCCCceEEEEEEEeCCCcCccccccccc
Confidence 3999999999999999999999999999999999999999999876543 23458999999999999999987632
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC-----------CCCcCce
Q 025943 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (246)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~-----------Ip~~~~~ 153 (246)
+|++++++++++++|+++|+++++++.||++.|+|+++||++|||+++|+++|+++||+|++ +||+++|
T Consensus 80 ~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v 159 (245)
T 1oys_A 80 KGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFL 159 (245)
T ss_dssp -----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCE
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCce
Confidence 35788999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEEecCcee-ecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 154 TSCSAGYLNSTPL-LDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRK 223 (246)
Q Consensus 154 ~avs~~~~~~~~l-vD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~ 223 (246)
+++|+|++++.++ +|+ .++++++|+ ++..++|+++|++| +++.+++.+++++|++++++|.+.++++++
T Consensus 160 ~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~-~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 238 (245)
T 1oys_A 160 AAISVGIDKEQGILLDLNYEEDSSAEVDMNVI-MTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHHEEEEEEEE-EETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEECCEEEEecCCHHHHhcCCCcEEEE-EcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888 994 346789985 58889999999985 699999999999999999999999999987
Q ss_pred HH
Q 025943 224 FL 225 (246)
Q Consensus 224 ~~ 225 (246)
+.
T Consensus 239 ~~ 240 (245)
T 1oys_A 239 DS 240 (245)
T ss_dssp --
T ss_pred hh
Confidence 65
No 12
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=1.1e-45 Score=319.79 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=195.6
Q ss_pred CCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccccc----
Q 025943 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (246)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~---- 84 (246)
+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|++|.+.+. ....|++|.++++|.+.|+++.++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~ 79 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPN-WLKGKGQGWITAEYSMLPRATQQRTIRESV 79 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCG-GGTTSSCCEEEEEEEECSCCTTSCCCCSST
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCC-CCCCCCceEEEEEEEcCCCccccccccccC
Confidence 4999999999999999999999999999999999999999999876642 33457899999999999999887632
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC-----------CCCcCce
Q 025943 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (246)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~-----------Ip~~~~~ 153 (246)
+|++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|++ |||+++|
T Consensus 80 ~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v 159 (255)
T 1udn_A 80 QGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFV 159 (255)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCce
Confidence 36789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 154 TSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKF 224 (246)
Q Consensus 154 ~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 224 (246)
+++|++++++.+++|+ .++++++|+ ++..++++.++++| .++.+++.+++++|++++++|.+.+++++++
T Consensus 160 ~avsvg~~~g~~llDpt~~Ee~~~~~~l~va-~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 160 AAVSVGIVNDRILLDLNFEEDSAAQVDMNVV-GTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEEETTEEEESCCHHHHHTCSEEEEEE-EETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred eEEEEEEECCEEEECCCHHHHhhCCCCEEEE-EeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999993 467889996 47788999999974 6999999999999999999999999998765
No 13
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.6e-45 Score=315.91 Aligned_cols=213 Identities=30% Similarity=0.405 Sum_probs=192.3
Q ss_pred CCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccccccC---
Q 025943 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK--- 85 (246)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~~--- 85 (246)
.|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|++|.+.+. ....|++|.++|+|.+.|+++.++.++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~ 80 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPR-FLKGQGQGWLTAEYGMLPRSTGERNQREAS 80 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSS-CCC---CCEEEEEEEECTTSSSSCCCCHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCC-ccCCCCcEEEEEEEEeCCCccccccccccC
Confidence 4999999999999999999999999999999999999999999876542 223468999999999999998876322
Q ss_pred -CCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCC-----------CCCcCce
Q 025943 86 -PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (246)
Q Consensus 86 -~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~-----------Ip~~~~~ 153 (246)
|++++++++++++|+++|+++++++.||++.|+|+++||++|||+++||+||+++||.+++ |||+++|
T Consensus 81 ~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~ 160 (239)
T 1r6l_A 81 RGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMV 160 (239)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCce
Confidence 6789999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 154 TSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRK 223 (246)
Q Consensus 154 ~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~ 223 (246)
+++|+|++++.+++|+ .++++++|++ +..++++.++++| .++.+++.+++++|++++++|.+.++++++
T Consensus 161 ~avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 161 AAVSVGIYQGVPVLDLDYLEDSAAETDLNVVM-TDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCEEEECCCHHHHhcCCceEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999994 3578899964 7788999999975 699999999999999999999999999875
No 14
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=9.3e-45 Score=317.48 Aligned_cols=217 Identities=20% Similarity=0.275 Sum_probs=196.8
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEE-cCccccccccCCCCceEEEEEEeecCCCccccc
Q 025943 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (246)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~ 83 (246)
+++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+ +|.++ ..+.|++|.++++|+++|++++.+
T Consensus 22 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~~~~~~~p~a~~~~- 97 (277)
T 2po1_B 22 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP---FPDTPNMGVMTTNVELVPLASPTF- 97 (277)
T ss_dssp HHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTSCEEEEEEEECGGGCTTC-
T ss_pred HhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCC---CCCCCCceEEEEEEEeCCCccccc-
Confidence 3689999999999999999999999999999999999999999999 66554 336789999999999999998764
Q ss_pred cCCCCCchHHHHHHHHHHHHhh--hhhcCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCC---------
Q 025943 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (246)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~le~~---p~---~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~--------- 146 (246)
+.|++++++++++++|+++|++ +|+++.| |+ |.|+|+++||++|||+++|+++|+++||+|++
T Consensus 98 ~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~ 177 (277)
T 2po1_B 98 EPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEE 177 (277)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTT
T ss_pred cCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCC
Confidence 3567889999999999999998 5888876 65 49999999999999999999999999999999
Q ss_pred ------------CCCcCceeEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEee--cCCCHHHHHHHHHH
Q 025943 147 ------------IPMRDIVTSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQL 206 (246)
Q Consensus 147 ------------Ip~~~~~~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~--g~~~~~~l~~~l~~ 206 (246)
+||+++|+++|++++++.+++|+ .++++++|++ +..++|+++++. ++++.+++.+++++
T Consensus 178 ~~~~~~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~lq~~g~~~~~~~~l~~~l~~ 256 (277)
T 2po1_B 178 TGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITT-DETGHISAVQKSEGGAFKLEEVMYAVET 256 (277)
T ss_dssp TCCEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTSCEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CceeecccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHHHHH
Confidence 89999999999999999999994 3678899964 778899999998 47999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025943 207 AIEGCKAVANYIREVRKFLL 226 (246)
Q Consensus 207 A~~~~~~i~~~i~~~l~~~~ 226 (246)
|.+++++|.+.+++++++.+
T Consensus 257 A~~~~~~l~~~~~~~l~~~~ 276 (277)
T 2po1_B 257 AFKKAEEIRKLILEAVEKAK 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998764
No 15
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=4.6e-44 Score=310.26 Aligned_cols=211 Identities=20% Similarity=0.310 Sum_probs=189.7
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccccccC
Q 025943 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (246)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~~ 85 (246)
++|+|+|||+++|+|++.+++|.+++++|||++++|+|+|+|+|+++... |..+.|++|.++++|++.|++++++ +.
T Consensus 19 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~l~v~~~~~p~a~~~~-~~ 95 (259)
T 3m7n_G 19 RDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGE--PYPDTPDRGVIIVNAELVPLASPTF-EP 95 (259)
T ss_dssp HTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEEC--CCSSCTTSCEEEEEEECCTTSCTTC-CS
T ss_pred hcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccC--CCCCCCCceEEEEEEEeCCcccccc-cC
Confidence 48999999999999999999999999999999999999999999964332 2345689999999999999999876 45
Q ss_pred CCCCchHHHHHHHHHHHHhh--hhhcCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCCC----------
Q 025943 86 PKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGI---------- 147 (246)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~le~~---p~---~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~I---------- 147 (246)
|++++++++++++|+++|++ +++++.| |+ |.|+|+++||++|||+++||++|+++||.+++|
T Consensus 96 g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~~ 175 (259)
T 3m7n_G 96 GPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175 (259)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSC
T ss_pred CCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCce
Confidence 78899999999999999999 7888876 74 799999999999999999999999999999999
Q ss_pred ---CCcCceeEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHHHHHHHHHHHHH
Q 025943 148 ---PMRDIVTSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQLAIEGCKAVAN 216 (246)
Q Consensus 148 ---p~~~~~~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g--~~~~~~l~~~l~~A~~~~~~i~~ 216 (246)
||+++|+++|+|++++.+++|+ .++++++|+ ++.+++++++++.| .++++++.+++++|++++++|.+
T Consensus 176 ~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va-~~~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~ 254 (259)
T 3m7n_G 176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTIT-TDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLRE 254 (259)
T ss_dssp EECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEE-ECTTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEE-EeCCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999993 356789996 46678999999984 69999999999999999999998
Q ss_pred HHHH
Q 025943 217 YIRE 220 (246)
Q Consensus 217 ~i~~ 220 (246)
.|++
T Consensus 255 ~~~~ 258 (259)
T 3m7n_G 255 KFKE 258 (259)
T ss_dssp TTC-
T ss_pred HHhh
Confidence 8764
No 16
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.7e-44 Score=311.12 Aligned_cols=214 Identities=20% Similarity=0.304 Sum_probs=193.1
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEE-cCccccccccCCCCceEEEEEEeecCCCccccc
Q 025943 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (246)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~ 83 (246)
+++++|+|||+++|+|++.+++|.+++++|||++++|+|+|+|+|+ +|.++. .+.|++|.++++|+++|++++++
T Consensus 20 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~---~~~~~~g~l~v~~~~~p~a~~~~- 95 (271)
T 2wnr_A 20 INNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPF---PDTPEMGVILTNSELLPMASPTF- 95 (271)
T ss_dssp HHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCC---TTCTTCCEEEEEEEECGGGCTTC-
T ss_pred HhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCC---CCCCCceEEEEEEEeCCcccccc-
Confidence 4689999999999999999999999999999999999999999999 555442 35689999999999999998764
Q ss_pred cCCCCCchHHHHHHHHHHHHhh--hhhcCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCC---------
Q 025943 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (246)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~le~~---p~---~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~--------- 146 (246)
+.|++++++++++++|+++|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||.+++
T Consensus 96 ~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~ 175 (271)
T 2wnr_A 96 EPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDG 175 (271)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETT
T ss_pred cCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 4678899999999999999999 5788876 54 59999999999999999999999999999999
Q ss_pred -----------CCCcCceeEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHHHH
Q 025943 147 -----------IPMRDIVTSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQLA 207 (246)
Q Consensus 147 -----------Ip~~~~~~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g--~~~~~~l~~~l~~A 207 (246)
+||+++|+++|+|++++.+++|+ .++++++|++ +..++|+++++.| .++.+++.++++.|
T Consensus 176 ~~~~~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~~~i~~i~~~g~~~~~~~~l~~~l~~a 254 (271)
T 2wnr_A 176 EVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGV-TEEGSICAMQKGGEGPLTRDDVLKAVSIA 254 (271)
T ss_dssp EEEEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEEESSSCBCHHHHHHHHHHH
T ss_pred ceeeccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999993 4678899964 6678999999984 69999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 025943 208 IEGCKAVANYIREVRK 223 (246)
Q Consensus 208 ~~~~~~i~~~i~~~l~ 223 (246)
++++++|.+.++++++
T Consensus 255 ~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 255 VEKVPQLIEYLDKSMT 270 (271)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 17
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=4.2e-44 Score=313.30 Aligned_cols=215 Identities=18% Similarity=0.238 Sum_probs=193.4
Q ss_pred cCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEE-cCccccccccCCCCceEEEEEEeecCCCcccc
Q 025943 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (246)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~ 82 (246)
.+++++|+|||+++|+|++.+++|.+++++|||++++|+|+|+|+|+ +|.++ ..+.|++|.++++|++.|++++++
T Consensus 24 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p---~~~~~~~g~l~v~~~~~p~a~~~~ 100 (277)
T 2je6_A 24 LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP---YEDTPNQGNLIVNVELLPLAYETF 100 (277)
T ss_dssp TGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC---CTTCTTCCEEEEEEEECTTSCTTC
T ss_pred HHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCC---CCCCCCccEEEEEEEeCCccCccc
Confidence 35689999999999999999999999999999999999999999999 44443 345689999999999999998765
Q ss_pred ccCCCCCchHHHHHHHHHHHHhhh--hhcCCC---C---CceEEEEEEEEecCCChHHHHHHHHHHHHHhCC--------
Q 025943 83 MRKPKGDRRSTEISLVIRQTMEAC--ILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAG-------- 146 (246)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~~--i~le~~---p---~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~-------- 146 (246)
+.|++++++++++++|+++|+++ ++++.| | .|.|+|+++||++|||+++|+++|+++||.+++
T Consensus 101 -~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~ 179 (277)
T 2je6_A 101 -EPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHS 179 (277)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred -ccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 35688999999999999999994 888887 2 469999999999999999999999999999999
Q ss_pred -------------CCCcCceeEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHH
Q 025943 147 -------------IPMRDIVTSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQ 205 (246)
Q Consensus 147 -------------Ip~~~~~~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g--~~~~~~l~~~l~ 205 (246)
+||+++|+++|+|++++.+++|+ .++++++|++ +..++|+++++.| .++.+++.++++
T Consensus 180 ~~~~~~~~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~ 258 (277)
T 2je6_A 180 NGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSY-TPDLKIVGIQKSGKGSMSLQDIDQAEN 258 (277)
T ss_dssp --CEEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTCCEEEEEEESSSCEEHHHHHHHHH
T ss_pred CcceEeccCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHH
Confidence 99999999999999999999994 3577899964 6678999999984 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025943 206 LAIEGCKAVANYIREVRK 223 (246)
Q Consensus 206 ~A~~~~~~i~~~i~~~l~ 223 (246)
.|+++++++.+.++++++
T Consensus 259 ~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 259 TARSTAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998763
No 18
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.8e-44 Score=309.14 Aligned_cols=207 Identities=21% Similarity=0.388 Sum_probs=174.1
Q ss_pred CCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccccccCC
Q 025943 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86 (246)
Q Consensus 7 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~~~ 86 (246)
+|.|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+.. +..+.|+++.++++ ++|. .|
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~-~~~~~~~~~~~~~~--~~P~-------~g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGT-RKGENPEKASIEVV--WKPM-------TG 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECC-CTTSCSSSCEEEEE--EECS-------SS
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCC-cccCCCccEEEEEE--eCCC-------CC
Confidence 68999999999999999999999999999999999999999999997654 34466888887665 4462 23
Q ss_pred CCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEEe-cCce
Q 025943 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTP 165 (246)
Q Consensus 87 ~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~-~~~~ 165 (246)
++++++++++++|+|+|+++++++.||+|.|+|+++||++|||+++|++||+++||+++||||+++++|++++++ ++.+
T Consensus 72 ~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~ 151 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCE
T ss_pred CCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEE
Confidence 566788899999999999999999999999999999999999999999999999999999999999999999998 7889
Q ss_pred eecC------CCCCeEEEEEcCCCCcEEEEEe------------------ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 166 LLDS------AGGPDVTVGILPTLDKVTLLQM------------------DAKLPTNTFEDVMQLAIEGCKAVANYIREV 221 (246)
Q Consensus 166 lvD~------~~~~~ltv~~~~~~~~i~~i~~------------------~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~ 221 (246)
++|+ .++++++|++ +.. ++|.+++ .|.++++++.++++.|++++++|.++|+++
T Consensus 152 llDpt~~Ee~~~~~~~~va~-~~~-~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 229 (246)
T 3hkm_A 152 ILDTNKAEEQQLKSFAHLVF-PNS-RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTT 229 (246)
T ss_dssp EESCCHHHHTTCSEEEEEEE-EC---------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHhcCCeeEEEEE-eCC-ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9993 4677888864 433 3666555 567999999999999999999999999998
Q ss_pred HHHH
Q 025943 222 RKFL 225 (246)
Q Consensus 222 l~~~ 225 (246)
+++.
T Consensus 230 l~~~ 233 (246)
T 3hkm_A 230 LQKQ 233 (246)
T ss_dssp TC--
T ss_pred HHhh
Confidence 8765
No 19
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2e-44 Score=315.45 Aligned_cols=216 Identities=24% Similarity=0.285 Sum_probs=193.4
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccccc
Q 025943 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (246)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~ 84 (246)
+++|+|+|||+++|+|++.+++|.+++++|||++++|+|+|+|+|++|... |...+|++|.++++|++.|++++++ +
T Consensus 20 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~--p~~~~~~~g~l~v~~~~~p~a~~~~-~ 96 (278)
T 2nn6_C 20 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAA--PSTDAPDKGYVVPNVDLPPLCSSRF-R 96 (278)
T ss_dssp HHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECC--CCSSSTTCCCCEEEEECCSSSCTTS-C
T ss_pred HhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeec--CCCCCCCccEEEEEEEeCCccCccc-c
Confidence 368999999999999999999999999999999999999999999987653 3345689999999999999999875 4
Q ss_pred CCCCCchHHHHHHHHHHHHhh--hhhcCCC---C---CceEEEEEEEEecCCChHHHHHHHHHHHHHhCCC---------
Q 025943 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAGI--------- 147 (246)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~le~~---p---~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~I--------- 147 (246)
+|++++++++++++|+++|++ +++++.+ | .|.|+|+++||++|||+++|+++|+++||+++||
T Consensus 97 ~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~ 176 (278)
T 2nn6_C 97 SGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEET 176 (278)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSS
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 578899999999999999995 6777764 3 4699999999999999999999999999999996
Q ss_pred -------------CCcCceeEEEEEEecC-ceeecC------CCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHHHH
Q 025943 148 -------------PMRDIVTSCSAGYLNS-TPLLDS------AGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQ 205 (246)
Q Consensus 148 -------------p~~~~~~avs~~~~~~-~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g--~~~~~~l~~~l~ 205 (246)
||+++|+++|+|++++ .+++|+ .++++++|+ ++..++|+++++.| .++.+++.++++
T Consensus 177 ~~~~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va-~~~~g~i~~v~~~g~~~~~~~~l~~~l~ 255 (278)
T 2nn6_C 177 ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIV-MDEEGKLCCLHKPGGSGLTGAKLQDCMS 255 (278)
T ss_dssp BCCCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEE-ECTTCCEEEEEESCCSCCCHHHHHHHHH
T ss_pred cceecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEE-EcCCCcEEEEEccCCCCCCHHHHHHHHH
Confidence 7999999999999998 899993 345688886 46678999999998 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025943 206 LAIEGCKAVANYIREVRKF 224 (246)
Q Consensus 206 ~A~~~~~~i~~~i~~~l~~ 224 (246)
.|++++++|.+.+++++++
T Consensus 256 ~a~~~~~~i~~~~~~~l~~ 274 (278)
T 2nn6_C 256 RAVTRHKEVKKLMDEVIKS 274 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 20
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=3.6e-43 Score=329.52 Aligned_cols=220 Identities=21% Similarity=0.340 Sum_probs=188.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEE-EcCccccccccCC--CCceEEEEEEeecCCC
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM--SDQALVRCEYSMANFS 78 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~~~~--p~~g~l~v~v~~~~~s 78 (246)
++|+++|.|+|||+++|+||+.+++|+++++||||+|++|+|+|+|+| +||.++.+..+.. +++|.+.++|.++|||
T Consensus 307 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~s 386 (549)
T 3gme_A 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 386 (549)
T ss_dssp HHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCC
Confidence 467889999999999999999999999999999999999999999999 6997765432222 3779999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHhhhhh-cCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEE
Q 025943 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (246)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs 157 (246)
++++++.++++.++.+++++++++|+++|+ .+.||++ |+|+++||++|||.++|++||+++||+|+||||+++++|+|
T Consensus 387 t~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs 465 (549)
T 3gme_A 387 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 (549)
T ss_dssp TTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cCCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEE
Confidence 998877778899999999999999999999 5789975 99999999999999999999999999999999999999999
Q ss_pred EEEecC----ceeecC------CCCCeEEEEEcCCCCcEEEEEeecC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 158 AGYLNS----TPLLDS------AGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVRKF 224 (246)
Q Consensus 158 ~~~~~~----~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~---~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 224 (246)
+|++++ .+++|. .++++++|+ ++.+.++++|+++. ++.+++.+++++|+++|.+|.+.+++++.+
T Consensus 466 ~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va--~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~ 543 (549)
T 3gme_A 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 (549)
T ss_dssp EEEEEETTEEEEEESCCHHHHHHSSEEEEEE--ECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEcCCCceEEEecCChHHHccCCceEEEE--ecCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999975 578892 356677773 55666999998764 799999999999999999999999998764
No 21
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.9e-42 Score=310.79 Aligned_cols=218 Identities=16% Similarity=0.189 Sum_probs=193.5
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccccc
Q 025943 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (246)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~ 84 (246)
+++++|+|||+++|+|++.+++| +++|||++++|+|+|+|+|++|.+.+. ..+|++|.+.++|++.|+++++++
T Consensus 35 L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p~--~~~~~~g~l~~~v~~~p~a~~~~~- 108 (358)
T 2nn6_A 35 IEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPK--LNRATEGILFFNLELSQMAAPAFE- 108 (358)
T ss_dssp HHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCC--STTTTSCCEEEEEEECTTTCSSCC-
T ss_pred HhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCCc--ccCCCCcEEEEEEEecCCcccccc-
Confidence 45899999999999999999999 899999999999999999999875443 456899999999999999987753
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh--hcCCC------CCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCC--------
Q 025943 85 KPKGDRRSTEISLVIRQTMEACI--LTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIP-------- 148 (246)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i--~le~~------p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip-------- 148 (246)
.|++++++++++++|+++|++++ +++.+ +.|.|+|+++||++|||+++||++|+++||.++++|
T Consensus 109 ~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~ 188 (358)
T 2nn6_A 109 PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 188 (358)
T ss_dssp SSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCe
Confidence 46788899999999999999964 44432 457999999999999999999999999999999999
Q ss_pred ---------------CcCceeEEEEEEe--cCceeecC------CCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHHH
Q 025943 149 ---------------MRDIVTSCSAGYL--NSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDV 203 (246)
Q Consensus 149 ---------------~~~~~~avs~~~~--~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g--~~~~~~l~~~ 203 (246)
++++|+++|+|++ ++.+++|+ .++++++|+ ++..++|+++++.| +++.+++.++
T Consensus 189 v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va-~t~~g~I~~lqk~G~~~ls~~~l~~~ 267 (358)
T 2nn6_A 189 VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIA-MNKHREICTIQSSGGIMLLKDQVLRC 267 (358)
T ss_dssp CBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEE-EETTTEEEEEEEESCCCCCHHHHHHH
T ss_pred eEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEE-EcCCCeEEEEEeCCCCCCCHHHHHHH
Confidence 8999999999987 67899993 367899996 68888999999987 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025943 204 MQLAIEGCKAVANYIREVRKFLLIAV 229 (246)
Q Consensus 204 l~~A~~~~~~i~~~i~~~l~~~~~~~ 229 (246)
+++|.+++++|.+.+++++++....+
T Consensus 268 l~~A~~~~~~i~~~~~~~l~~~~~~r 293 (358)
T 2nn6_A 268 SKIAGVKVAEITELILKALENDQKVR 293 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 99999999999999999999875543
No 22
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.5e-42 Score=305.87 Aligned_cols=218 Identities=18% Similarity=0.200 Sum_probs=192.7
Q ss_pred CCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccccccC
Q 025943 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (246)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~~ 85 (246)
++++|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++.. .|..+.|++|.+.++|++.|+++++++ .
T Consensus 33 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~--~p~~~~~~~g~l~~~v~~~p~a~~~~~-~ 109 (305)
T 2nn6_E 33 QEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMG--TPKLEKPNEGYLEFFVDCSASATPEFE-G 109 (305)
T ss_dssp HTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCS--CCCSSSCSSCCEEEECCCCTTTCSSCC-T
T ss_pred hcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEee--CCCcCCCCceEEEEEEEeCCCcCcccc-C
Confidence 5799999999999999999999999999999999999999999998654 334567899999999999999987652 2
Q ss_pred CCCCchHHHHHHHHHHHHhh--hhhcC---CCCC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcC------
Q 025943 86 PKGDRRSTEISLVIRQTMEA--CILTH---LMPR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRD------ 151 (246)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~--~i~le---~~p~---~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~------ 151 (246)
+.+++++++++++|+++|++ +|+++ .+|+ |.|+|+++||++|||+++||++|+++||.++++|+.+
T Consensus 110 r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~ 189 (305)
T 2nn6_E 110 RGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 189 (305)
T ss_dssp TSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC--
T ss_pred CCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 23557889999999999999 68888 5786 4699999999999999999999999999999999653
Q ss_pred ---------------------ceeEEEEEEecCceeecC------CCCCeEEEEEcCCCCcEEEEEeec--CCCHHHHHH
Q 025943 152 ---------------------IVTSCSAGYLNSTPLLDS------AGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFED 202 (246)
Q Consensus 152 ---------------------~~~avs~~~~~~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g--~~~~~~l~~ 202 (246)
+|+++|+|++++.+++|+ .++++++|+ ++..++|+++++.| .++.+++.+
T Consensus 190 ~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va-~~~~g~i~~i~~~g~~~l~~~~l~~ 268 (305)
T 2nn6_E 190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVS-VTSKGVVTCMRKVGKGSLDPESIFE 268 (305)
T ss_dssp ----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEEC-CCSSSCCCEEEEEESSCBCHHHHHH
T ss_pred CceeeeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEE-EcCCCCEEEEEccCCCCCCHHHHHH
Confidence 478999999999999993 466788885 56678899999987 799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025943 203 VMQLAIEGCKAVANYIREVRKFLLI 227 (246)
Q Consensus 203 ~l~~A~~~~~~i~~~i~~~l~~~~~ 227 (246)
+++.|.+++++|.+.+++++++...
T Consensus 269 ~l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 269 MMETGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 23
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=3.4e-42 Score=331.69 Aligned_cols=221 Identities=23% Similarity=0.349 Sum_probs=196.1
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEE-EcCccccccccC--CCCceEEEEEEeecCCC
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFS 78 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~~~--~p~~g~l~v~v~~~~~s 78 (246)
++|+++|.|+|||+++|+||+.+++|++++++|||+|++|+|+|+|+| +||.++.++.+. .+++|.+.++|+++|||
T Consensus 323 ~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~s 402 (726)
T 4aid_A 323 RGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYS 402 (726)
T ss_dssp HHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCc
Confidence 357889999999999999999999999999999999999999999999 799887654322 25778999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHhhhhh-cCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEE
Q 025943 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (246)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs 157 (246)
+++++++++++.++.+++++++|+|+++++ .+.||++ |+|+++||++|||.++|++||+++||+||||||+++++|++
T Consensus 403 t~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~Vaavs 481 (726)
T 4aid_A 403 VGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIA 481 (726)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEE
Confidence 998877778999999999999999999998 5789985 99999999999999999999999999999999999999999
Q ss_pred EEEecC----ceeecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 158 AGYLNS----TPLLDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKF 224 (246)
Q Consensus 158 ~~~~~~----~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 224 (246)
+|++++ .+++|. .+++++.| .++.+.|+.+|++| +++.+++.+++++|+++|.+|.+.|++++.+
T Consensus 482 vGli~~g~~~~iLlD~~~~Ed~~gd~d~~V--a~t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~ 559 (726)
T 4aid_A 482 MGLILEQDGFAVLSDILGDEDHLGDMDFKV--AGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDA 559 (726)
T ss_dssp EEEEECSSCEEEEESCCTTGGGGSSEEEEE--EEETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEcCCCceEEEecCChhHHhcCCceEEE--EecCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999964 366792 23455555 45667799999987 4799999999999999999999999998765
Q ss_pred H
Q 025943 225 L 225 (246)
Q Consensus 225 ~ 225 (246)
.
T Consensus 560 ~ 560 (726)
T 4aid_A 560 P 560 (726)
T ss_dssp C
T ss_pred h
Confidence 3
No 24
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-42 Score=303.87 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccccc
Q 025943 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (246)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~ 84 (246)
+++++|+|||+++|+|++.+++| +++|||++++|+|+|+|+|++|...+ ..+.|++|.+.++|+++|++.+.. +
T Consensus 19 l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p--~~~~~~~g~~~~~ve~~~~~~~~~-~ 92 (305)
T 2wp8_A 19 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQP--YEDRPFEGLFVISTEISPMAGSQF-E 92 (305)
T ss_dssp HTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-C--CSSCTTCCEEEEEECCC---------
T ss_pred HhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCC--cccCCCCcEEEEEEEECCCCCccc-c
Confidence 36899999999999999999999 79999999999999999999875443 345689999999999999987765 3
Q ss_pred CCCCC-chHHHHHHHHHHHHh--hhhhcCCC---CC---ceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCC-------
Q 025943 85 KPKGD-RRSTEISLVIRQTME--ACILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (246)
Q Consensus 85 ~~~~~-~~~~~l~~~l~~~l~--~~i~le~~---p~---~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip------- 148 (246)
+|+++ +++++++++|+++|+ ++|+++.+ |+ |.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 93 ~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~ 172 (305)
T 2wp8_A 93 NGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE 172 (305)
T ss_dssp --------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTS
T ss_pred CCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 46677 889999999999999 56888865 65 5799999999999999999999999999999999
Q ss_pred ----------------CcCceeEEEEEEec--------------CceeecC------CCCCeEEEEEcCCCCcEEEEEee
Q 025943 149 ----------------MRDIVTSCSAGYLN--------------STPLLDS------AGGPDVTVGILPTLDKVTLLQMD 192 (246)
Q Consensus 149 ----------------~~~~~~avs~~~~~--------------~~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~ 192 (246)
|++.|+++|+|+++ +.+++|+ .++++++|+ ++..++|+.+++.
T Consensus 173 ~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va-~~~~g~i~~l~~~ 251 (305)
T 2wp8_A 173 QIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVT-LNKNREVVQVSKA 251 (305)
T ss_dssp SCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEE-ECTTSEEEEEEEE
T ss_pred ceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEE-EcCCCcEEEEEec
Confidence 67899999999996 7789993 367889996 5778899999999
Q ss_pred c--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025943 193 A--KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 229 (246)
Q Consensus 193 g--~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~ 229 (246)
| +++.+++.+++++|.+++++|.+.+++++++....+
T Consensus 252 g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r 290 (305)
T 2wp8_A 252 GGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKR 290 (305)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 699999999999999999999999999999885544
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=9.8e-42 Score=325.40 Aligned_cols=220 Identities=23% Similarity=0.292 Sum_probs=193.2
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCcc-cccccc------CCCCceEEEEEEee
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE-VQNKSQ------QMSDQALVRCEYSM 74 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e-~~~~~~------~~p~~g~l~v~v~~ 74 (246)
++|+++|.|+|||+++|+||+.+++|++++++|||+|++|+|+|+|+|++|.. +.+..+ ..+++|.+.++|.+
T Consensus 311 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~ 390 (630)
T 3u1k_A 311 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEF 390 (630)
T ss_dssp HHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEe
Confidence 46788999999999999999999999999999999999999999999998433 322111 13678999999999
Q ss_pred cCCCccccccCCCCCchHHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCcee
Q 025943 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVT 154 (246)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~ 154 (246)
+||+++++++.|++++++.+++++++|+|+++++ +.||+ +|+|+++||++|||.++|+++|+++||+|+||||+++++
T Consensus 391 ~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~-tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Va 468 (630)
T 3u1k_A 391 PPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPF-TIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 468 (630)
T ss_dssp CGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSS-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCE
T ss_pred cCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCe-EEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceE
Confidence 9999998877788899999999999999999997 56896 599999999999999999999999999999999999999
Q ss_pred EEEEEEec------C-----ceeec------CCCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHH
Q 025943 155 SCSAGYLN------S-----TPLLD------SAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAV 214 (246)
Q Consensus 155 avs~~~~~------~-----~~lvD------~~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i 214 (246)
|+|+|+++ + .+++| +.++++++|+ .+.++ |+.+|++| +++.+++.+++++|++++++|
T Consensus 469 avs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va-~t~~g-It~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I 546 (630)
T 3u1k_A 469 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIA-GTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEI 546 (630)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEE-ECSSC-EEEEEEEECSSCBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEE-ecCCc-eEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999997 2 57889 3456777774 45455 99999997 579999999999999999999
Q ss_pred HHHHHHHHHHH
Q 025943 215 ANYIREVRKFL 225 (246)
Q Consensus 215 ~~~i~~~l~~~ 225 (246)
.+.|++++.+.
T Consensus 547 ~~~m~~al~~~ 557 (630)
T 3u1k_A 547 LQIMNKTISKP 557 (630)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=1.7e-41 Score=329.07 Aligned_cols=221 Identities=24% Similarity=0.381 Sum_probs=198.8
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEE-EcCccccccccC--CCCceEEEEEEeecCCC
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQ--MSDQALVRCEYSMANFS 78 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~~~--~p~~g~l~v~v~~~~~s 78 (246)
++|++++.|+|||+++|+||+.+++|++++++|||+|++|+|+|+|+| .||.++.++.+. .+++|.+.++|+++|||
T Consensus 348 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~s 427 (757)
T 1e3p_A 348 ERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYS 427 (757)
T ss_dssp HHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcc
Confidence 467789999999999999999999999999999999999999999999 599887655432 45789999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHhhhhh-cCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEE
Q 025943 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (246)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs 157 (246)
++++++.+++++++.+++++++|+|+++|+ .+.||++ |+|+++||++|||+++|+++|+++||+|+||||+++++++|
T Consensus 428 t~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs 506 (757)
T 1e3p_A 428 VGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYA-IRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 506 (757)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhccccccCCEE-EEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 998866678899999999999999999998 6889975 99999999999999999999999999999999999999999
Q ss_pred EEEe----cC----ceeecC------CCCCeEEEEEcCCCCcEEEEEeecC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 158 AGYL----NS----TPLLDS------AGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 220 (246)
Q Consensus 158 ~~~~----~~----~~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g~---~~~~~l~~~l~~A~~~~~~i~~~i~~ 220 (246)
+|++ ++ .+++|+ .++++++|+ ++.++|+.+|++|. ++.+++.+++++|++++.+|.+.|++
T Consensus 507 ~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va--~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~ 584 (757)
T 1e3p_A 507 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVA--GTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 584 (757)
T ss_dssp EEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEE--ECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCccceeEEeCCCHHHHhccCceEEEE--ecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 33 578893 467788884 66688999999875 59999999999999999999999999
Q ss_pred HHHHH
Q 025943 221 VRKFL 225 (246)
Q Consensus 221 ~l~~~ 225 (246)
++.+.
T Consensus 585 al~~~ 589 (757)
T 1e3p_A 585 AIDTP 589 (757)
T ss_dssp HCSSC
T ss_pred Hhccc
Confidence 88654
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.9e-40 Score=320.73 Aligned_cols=221 Identities=20% Similarity=0.302 Sum_probs=185.4
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEE-EcCcccccccc--CCCCceEEEEEEeecCCC
Q 025943 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (246)
Q Consensus 2 e~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~~--~~p~~g~l~v~v~~~~~s 78 (246)
++|++++.|+|||+++|+||+.+++|++++++|||+|++|+|+|+|+| .||.+..+..+ ..+++|.+.++|.++|++
T Consensus 313 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~s 392 (723)
T 3cdi_A 313 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 392 (723)
T ss_dssp HHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGG
T ss_pred HHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCC
Confidence 467889999999999999999999999999999999999999999999 69977543211 235778999999999999
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHhhhhhc-CCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEE
Q 025943 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (246)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l-e~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs 157 (246)
++++++.+.+++++.+++++++++|++++++ +.||++ |+|+++||++|||+++|+++|+++||+|+||||+++++++|
T Consensus 393 t~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs 471 (723)
T 3cdi_A 393 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 471 (723)
T ss_dssp GTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEE
Confidence 9987666677888889999999999999996 678965 99999999999999999999999999999999999999999
Q ss_pred EEEec-Cc---eeecC------CCCCeEEEEEcCCCCcEEEEEeec---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 158 AGYLN-ST---PLLDS------AGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVRKF 224 (246)
Q Consensus 158 ~~~~~-~~---~lvD~------~~~~~ltv~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~ 224 (246)
+|+++ +. +++|+ .++++++|+ .+.++ |+.+|++| +++.+++.+++++|++++.+|.+.|++++.+
T Consensus 472 ~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va-~t~~g-I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~ 549 (723)
T 3cdi_A 472 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 549 (723)
T ss_dssp EEEEEETTEEEEESSCCGGGGGGCSEEEEEE-ECSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEcCCCceEEEECCChHHhhhccceeeec-ccCCc-eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99996 43 78893 456788885 45555 99999984 5899999999999999999999999999876
Q ss_pred H
Q 025943 225 L 225 (246)
Q Consensus 225 ~ 225 (246)
.
T Consensus 550 ~ 550 (723)
T 3cdi_A 550 P 550 (723)
T ss_dssp -
T ss_pred c
Confidence 5
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=2.5e-42 Score=293.06 Aligned_cols=198 Identities=23% Similarity=0.333 Sum_probs=155.8
Q ss_pred CCCCcceEEEECCCCCCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccccccCCCCCchHHHH
Q 025943 16 PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEI 95 (246)
Q Consensus 16 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~~~~~~~~~~~~~l 95 (246)
.+|+|++.+++|++++++|||++++|+|+|+|+|+||.+++. ..+.|+++.++++|. |+++ +++++ ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~-~~~~~~~~~l~v~~~--p~~G-------~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHA-SKASDEAMTLDISYR--ANCG-------DNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC--------------CCCSS--CCCC---------CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcc-cccCCceEEEEEEEc--CCCC-------CCCHH--HH
Confidence 579999999999999999999999999999999999988664 345678888876654 6542 23333 78
Q ss_pred HHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChHHHHHHHHHHHHHhCCCCCcCceeEEEEEEecCceeecC------
Q 025943 96 SLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDS------ 169 (246)
Q Consensus 96 ~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~~~~~lvD~------ 169 (246)
+++|+|+|+++++++.||++.|+|+++||++||++++|++||+++||.++||||+++++|+++|++++.+++|+
T Consensus 70 ~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 70 NNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEA 149 (222)
T ss_dssp TTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCTTTTT
T ss_pred HHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CCCCeEEEEE---cCCCCcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 170 AGGPDVTVGI---LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL 225 (246)
Q Consensus 170 ~~~~~ltv~~---~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~ 225 (246)
.++++++|++ +++.++|++++++|.++++++.++++.|.+++++|.+.+++++++.
T Consensus 150 ~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 208 (222)
T 3krn_A 150 ASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK 208 (222)
T ss_dssp SCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789976 5668999999999999999999999999999999999999998876
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=262.55 Aligned_cols=209 Identities=18% Similarity=0.268 Sum_probs=180.8
Q ss_pred CCcceEEEECCCCC-CCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccc-----cccCCCCCch
Q 025943 18 EMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (246)
Q Consensus 18 e~R~i~i~~g~l~~-a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~-----~~~~~~~~~~ 91 (246)
.-|++.+++|.+++ |+|||++++|+|+|+|+|+||.+++.. +..+++|+|+..+++.+. .++.++++++
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~-----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS-----SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC-----CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 46899999999986 999999999999999999999876531 556799999999888742 2344678999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCCh--HHHHHHHHHHHHHhCCCCCcCceeEEEEEEecCceeecC
Q 025943 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDS 169 (246)
Q Consensus 92 ~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~l--l~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~~~~~lvD~ 169 (246)
+.+++++|+|.|+++++++.+|+.+ |+++||+.||+. ..+|+||+++||.+++|||++.++|+++|++++.+++|+
T Consensus 88 e~lisRlIdR~lRp~~~~~~~~~~q--I~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 88 EILTSRIIDRSIRPLFPAGYFYDTQ--VLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCCCEE--EEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHhHHhhhcccccCCCceE--EEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 9999999999999999988888654 699999999998 789999999999999999999999999999999999994
Q ss_pred ------CCCCeEEEEEcCCCCcEEEEEeecC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccce
Q 025943 170 ------AGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDIVGL 234 (246)
Q Consensus 170 ------~~~~~ltv~~~~~~~~i~~i~~~g~-~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~~~~ 234 (246)
.++.+++|+. +..++|++++..|. ++++++.+++++|.+.++++.+++++.+++. +..|+|...
T Consensus 166 t~~E~~~s~~dl~Va~-t~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAG-APKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKL 237 (630)
T ss_dssp CHHHHHTEEEEEEEEE-ETTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCC
T ss_pred CHHHHhhCCceEEEEE-ccCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Confidence 4567788864 46678999999886 9999999999999999999999999999988 778887643
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.96 E-value=5.2e-28 Score=226.93 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=171.4
Q ss_pred CCcceEEEECCCC-CCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccc-----ccCCCCCch
Q 025943 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRR 91 (246)
Q Consensus 18 e~R~i~i~~g~l~-~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~-----~~~~~~~~~ 91 (246)
.-|++.+++|.+. +|+||+++++|+|+|+|+|++|.+++... +..+++++|....++.+.. ++.|+++++
T Consensus 12 ~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g~----df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~ 87 (549)
T 3gme_A 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ----DFFPLTVNYQERTYAAGRIPGSFFRREGRPSEG 87 (549)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTC----CSCCEEEEEEECGGGTTCCCSCC-----CCCHH
T ss_pred CCEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCCC----CCccceeeeeeehhhcccCCCcCcCcCCCCChh
Confidence 3589999999886 59999999999999999999987654321 3345999997544444322 345889999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCChH--HHHHHHHHHHHHhCCCCCcCceeEEEEEEecCceeecC
Q 025943 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR--SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDS 169 (246)
Q Consensus 92 ~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~ll--~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~~~~~lvD~ 169 (246)
+++++|+|+|.|+++++...+. .++|+++||+.||+.. .+++||+++||..++||+++.++++++|+++|.+++|+
T Consensus 88 ~~l~~RlIdR~lRplfp~~~~~--evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~vlnP 165 (549)
T 3gme_A 88 ETLIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNP 165 (549)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEEEESC
T ss_pred hhHHHHHhCCccccccccCCcc--cEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCEEEECC
Confidence 9999999999999987765543 5888999999998653 57899999999999999999999999999999999993
Q ss_pred ------CCCCeEEEEEcCCCCcEEEEEeec-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccc
Q 025943 170 ------AGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDIVG 233 (246)
Q Consensus 170 ------~~~~~ltv~~~~~~~~i~~i~~~g-~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~~~ 233 (246)
.++.+++|+ .+.+.+++++..| .++++++.+++++|.+.++++.+.+++++++. +..|+|..
T Consensus 166 t~~e~~~s~~dl~va--~t~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~~ 235 (549)
T 3gme_A 166 TQDELKESKLDLVVA--GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP 235 (549)
T ss_dssp CTTTTTTCSBCEEEE--ECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CHHHHhhCceEEEEE--ecCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 355678874 4445599999886 69999999999999999999999999999998 77777754
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.96 E-value=2e-27 Score=229.09 Aligned_cols=208 Identities=20% Similarity=0.265 Sum_probs=173.8
Q ss_pred CCcceEEEECCCC-CCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccc-----cccCCCCCch
Q 025943 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (246)
Q Consensus 18 e~R~i~i~~g~l~-~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~-----~~~~~~~~~~ 91 (246)
.-|++.+++|.+. +|+|||++++|+|+|+|+|++|.+++.. .+..+++++|+...++.+. .++.|+++++
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g----~df~pltveY~ek~~a~G~iPg~~~~REGrps~~ 101 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG----QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEK 101 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC----CCCcCceeeeeeehhhcccCCCcccCCCCCCCch
Confidence 4689999999886 5999999999999999999998765432 1345699999754443322 2345889999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCCh--HHHHHHHHHHHHHhCCCCCcCceeEEEEEEecCceeecC
Q 025943 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDS 169 (246)
Q Consensus 92 ~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~l--l~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~~~~~lvD~ 169 (246)
+++++|+|+|.||++++...+ ..++|+++||+.||+. ..+++||+++||..+++|+++.++|+++|++++.+++|+
T Consensus 102 ~~li~RlIdR~lRplf~~~~~--~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~vldP 179 (726)
T 4aid_A 102 ETLVSRLIDRPIRPLFVKGFK--NEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNP 179 (726)
T ss_dssp HHHHHHHHHHHHGGGBCTTCC--SCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEEEESC
T ss_pred hhhHHHHhCCccccccccCCc--cceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEECC
Confidence 999999999999998876654 3688999999999875 357999999999999999999999999999999999993
Q ss_pred ------CCCCeEEEEEcCCCCcEEEEEeec-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccc
Q 025943 170 ------AGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDIVG 233 (246)
Q Consensus 170 ------~~~~~ltv~~~~~~~~i~~i~~~g-~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~~~ 233 (246)
.++.+++|+ ++.. .+++++..+ .++++++.+++++|.+.++++.+.+++++++. +..|+|..
T Consensus 180 t~~E~~~s~~dl~va-~t~~-~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~~k~~~~~ 249 (726)
T 4aid_A 180 TLDEMKESKMDLVVA-GTAD-AVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEP 249 (726)
T ss_dssp CHHHHHTCSEEEEEE-ECSS-CEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CHHHHhhCceeEEEE-EeCC-eEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 466778874 3433 499999886 59999999999999999999999999999988 77777753
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.96 E-value=3.4e-27 Score=229.02 Aligned_cols=209 Identities=15% Similarity=0.149 Sum_probs=174.2
Q ss_pred CcceEEEECCCC-CCCeEEEEEe-CCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCccc-----cccCCCCCch
Q 025943 19 MRQLRAEIGNVA-KADGSAVFEM-GNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (246)
Q Consensus 19 ~R~i~i~~g~l~-~a~GSa~v~~-G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~-----~~~~~~~~~~ 91 (246)
-|++.+++|.+. +|+|||++++ |+|+|+|+|++|.+++.+. +..+|+|+|+...++.+. .++.|+++++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~~----df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQL----DFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTTC----SSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCCC----CCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 489999999975 8999999999 9999999999987764332 345599999765544432 2355889999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCCh--HHHHHHHHHHHHHhCCCCCcCceeEEEEEEecCceeecC
Q 025943 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDS 169 (246)
Q Consensus 92 ~~~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~l--l~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~~~~~lvD~ 169 (246)
+++++|+|+|.||+.++...+ ..++|+++||+.||+. ..+++||+++||.+++||+.+.++|+++|++++.+++|+
T Consensus 112 e~l~~RlIdR~LRplfp~~~~--~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnP 189 (757)
T 1e3p_A 112 AILTCRLIDRPLRPSFKKGLR--NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHHGGGBCTTBC--EEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHCCcchhccccCCC--CceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEECC
Confidence 999999999999996554432 3699999999999976 899999999999999999999999999999999999993
Q ss_pred ------CCCCeEEEEEcC---CCCcEEEEEe-------------ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 025943 170 ------AGGPDVTVGILP---TLDKVTLLQM-------------DAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFL-L 226 (246)
Q Consensus 170 ------~~~~~ltv~~~~---~~~~i~~i~~-------------~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~ 226 (246)
.+..+++|+... ..+.|.+++. .+.++++++.+++++|.+.++++.+++++++++. +
T Consensus 190 t~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~~~ 269 (757)
T 1e3p_A 190 THTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAK 269 (757)
T ss_dssp CHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667775321 1677899998 3469999999999999999999999999999988 7
Q ss_pred hhccccc
Q 025943 227 IAVDIVG 233 (246)
Q Consensus 227 ~~~~~~~ 233 (246)
..|+|..
T Consensus 270 ~~~~~~~ 276 (757)
T 1e3p_A 270 PTGEFPV 276 (757)
T ss_dssp CCCCCCB
T ss_pred CCccCCC
Confidence 7777754
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.95 E-value=4.7e-27 Score=227.30 Aligned_cols=206 Identities=19% Similarity=0.276 Sum_probs=170.5
Q ss_pred cceEEEECCCC-CCCeEEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCCcccc-----ccCCCCCchHH
Q 025943 20 RQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRST 93 (246)
Q Consensus 20 R~i~i~~g~l~-~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~p~~g~l~v~v~~~~~s~~~~-----~~~~~~~~~~~ 93 (246)
|++.+++|.+. +|+|||++++|+|+|+|+|+++.+++.. .+..+++|+|....++.+.. ++.|+++++++
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~----~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----CCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC----CCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 59999999884 8999999999999999999988654321 14456899998765555442 35688999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCceEEEEEEEEecCCCh-H-HHHHHHHHHHHHhCCCCCcCceeEEEEEEecCceeecCC-
Q 025943 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-R-SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDSA- 170 (246)
Q Consensus 94 ~l~~~l~~~l~~~i~le~~p~~~I~i~v~VL~~dG~l-l-~a~i~aa~~AL~~a~Ip~~~~~~avs~~~~~~~~lvD~~- 170 (246)
+++|+|+|.|++++.... ++.++|+++||+.||+. . .+|+||+++||..++||+.+.++++++|++++.+++|+.
T Consensus 96 l~sRlIdR~lRplfp~~~--~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~v~nPt~ 173 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEEEESCCT
T ss_pred HHHHHhCccchhcccccC--cceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCEEEECcCH
Confidence 999999999999765543 35799999999999996 4 499999999999999999999999999999999999942
Q ss_pred -----CCCeEEEEEcCCCCcEEEEEeecC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccc
Q 025943 171 -----GGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVRKFL-LIAVDIVG 233 (246)
Q Consensus 171 -----~~~~ltv~~~~~~~~i~~i~~~g~-~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~-~~~~~~~~ 233 (246)
++.+++|+ ++.+.+++++..+. ++++++.++++.|.+.++++.+++++++++. +..|+|..
T Consensus 174 ~e~~~s~~~lvva--gt~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (723)
T 3cdi_A 174 DELKESKLDLVVA--GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP 241 (723)
T ss_dssp TGGGGCSEEEEEE--ECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCCCC
T ss_pred HHHHhCCceEEEE--ccCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 34566664 55566999998764 9999999999999999999999999999988 66777743
No 34
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=40.37 E-value=1.1e+02 Score=23.05 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=37.8
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeec----CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Q 025943 170 AGGPDVTVGILPTLDKVTLLQMDA----KLPTNTFEDVMQLAIEGCKAVA-NYIREVRKFLLIAVDI 231 (246)
Q Consensus 170 ~~~~~ltv~~~~~~~~i~~i~~~g----~~~~~~l~~~l~~A~~~~~~i~-~~i~~~l~~~~~~~~~ 231 (246)
+..+.++| .++.++++..++-+- +-+.+.+++++-.|...+.+=. +..++.+.+.+.+..+
T Consensus 73 sGgGlVkV-tvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~e~~~e~M~~ltgGl~l 138 (143)
T 1ybx_A 73 AGGGAVTV-VATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKITGGLGG 138 (143)
T ss_dssp ETTTTEEE-EEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ECCCEEEE-EEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34556777 568899999999873 2456788888887776665433 3345556666544443
No 35
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=40.29 E-value=25 Score=21.24 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025943 194 KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIA 228 (246)
Q Consensus 194 ~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~ 228 (246)
.++.+.+.++-++|........++|++++...+..
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 47799999999999999999999999998877543
No 36
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=32.78 E-value=1.3e+02 Score=21.72 Aligned_cols=43 Identities=2% Similarity=0.036 Sum_probs=35.0
Q ss_pred CcEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 184 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVRKFLL 226 (246)
Q Consensus 184 ~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~ 226 (246)
.-.+-++.+|..+.+.+.++++--.+.|..+.+.+++++++..
T Consensus 62 ~~~lrIqT~~~~p~eaL~~al~~L~~~~~~l~~~f~~a~~~~~ 104 (115)
T 1xpp_A 62 NPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYE 104 (115)
T ss_dssp CCEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466788887668888999999999999999999888877653
No 37
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=28.48 E-value=26 Score=22.08 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025943 195 LPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAV 229 (246)
Q Consensus 195 ~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~ 229 (246)
++++...++-..|....+.+..+|+++|+..+.+.
T Consensus 20 Id~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~~ 54 (56)
T 2kel_A 20 MDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_dssp EEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999876654
No 38
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=27.52 E-value=39 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025943 194 KLPTNTFEDVMQLAIEGCKAVANYIREVR 222 (246)
Q Consensus 194 ~~~~~~l~~~l~~A~~~~~~i~~~i~~~l 222 (246)
.+++++...+-+.|......+.+++++++
T Consensus 21 Rlt~eE~~~l~~~A~~~g~s~SeyiR~~~ 49 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGLTVSAYIRNAA 49 (51)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999999999999999874
No 39
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.09 E-value=66 Score=18.36 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025943 194 KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLI 227 (246)
Q Consensus 194 ~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~ 227 (246)
.++.+.+.++=++|......-.++|++++...+.
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4678888888888988888888999998887643
No 40
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=20.08 E-value=1.1e+02 Score=19.68 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025943 194 KLPTNTFEDVMQLAIEGCKAVANYIREVRKFLLIAVD 230 (246)
Q Consensus 194 ~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~ 230 (246)
.++++.-..+-+.|......+..+|..+|++...+.+
T Consensus 13 Rlp~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~~ 49 (64)
T 1nla_A 13 RWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG 49 (64)
T ss_dssp SSCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999998866544
Done!