BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025945
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1APY|A Chain A, Human Aspartylglucosaminidase
pdb|1APY|C Chain C, Human Aspartylglucosaminidase
pdb|1APZ|A Chain A, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|C Chain C, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 162
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 105/162 (64%), Gaps = 3/162 (1%)
Query: 24 SGKYPIVVSTWPFXXXXXXXXXXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENG 83
S P+VV+TWPF G SA+DAV GC+ CE +CDG+VG GGSPDE G
Sbjct: 1 SSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELG 60
Query: 84 ETTIDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPG 143
ETT+DA+IM+G TM+VGAV +R +K+ I AR V++HT HTLL GE A+ FA +MG
Sbjct: 61 ETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFIN 120
Query: 144 PANLSSAESMDKWTKWRENGCQPNFWKNVV--PVDGCGPYQP 183
+LS++ S + W CQPN+W+NV+ P CGPY+P
Sbjct: 121 -EDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKP 161
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 44/219 (20%)
Query: 28 PIVVSTWPFXXXXXXXX-XXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETT 86
PIV+STW F G A+DAV +G E+ + +VG GG PD +G T
Sbjct: 5 PIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVT 64
Query: 87 IDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPAN 146
+DA IM+ +G+VA M +K+ I AR VM+ T H +L G+ A FA++ G N
Sbjct: 65 LDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KEN 122
Query: 147 LSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESG 206
L +AES +W +W + Y+P N
Sbjct: 123 LLTAESEKEWKEWLK----------------TSQYKPIVN-------------------- 146
Query: 207 SSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGR 245
+ +H+TI M +D G+++ +T+G +K+ GR
Sbjct: 147 -----IENHNTIGMIALDAQGNLSGACTTSGMAYKMHGR 180
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 44/219 (20%)
Query: 28 PIVVSTWPFXXXXXXXX-XXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETT 86
PIV+STW F G A+DAV +G E+ + +VG GG PD +G T
Sbjct: 5 PIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVT 64
Query: 87 IDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPAN 146
+DA IM+ +G+VA M +K+ I AR VM+ T H +L G+ A FA++ G N
Sbjct: 65 LDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KEN 122
Query: 147 LSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESG 206
L +AES +W +W + Y+P N
Sbjct: 123 LLTAESEKEWKEWLK----------------TSQYKPIVN-------------------- 146
Query: 207 SSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGR 245
+ +HD I M +D G+++ +T+G +K+ GR
Sbjct: 147 -----IENHDAIGMIALDAQGNLSGACTTSGMAYKMHGR 180
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 44/219 (20%)
Query: 28 PIVVSTWPFXXXXXXXX-XXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETT 86
PIV+STW F G A+DAV +G E+ + +VG GG PD +G T
Sbjct: 5 PIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVT 64
Query: 87 IDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPAN 146
+DA IM+ +G+VA M +K+ I AR VM+ T H +L G+ A FA++ G N
Sbjct: 65 LDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KEN 122
Query: 147 LSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESG 206
L +AES +W +W + Y+P N
Sbjct: 123 LLTAESEKEWKEWLKT----------------SQYKPIVN-------------------- 146
Query: 207 SSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGR 245
+ +HD I M +D G+++ +T+G +K+ GR
Sbjct: 147 -----IENHDCIGMIALDAQGNLSGACTTSGMAYKMHGR 180
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 44/219 (20%)
Query: 28 PIVVSTWPFXXXXXXXX-XXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETT 86
PIV+STW F G A+DAV +G E+ + +VG GG PD +G T
Sbjct: 9 PIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVT 68
Query: 87 IDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPAN 146
+DA IM+ +G+VA M +K+ I AR VM+ T H +L G+ A FA++ G N
Sbjct: 69 LDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KEN 126
Query: 147 LSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESG 206
L +AES +W +W + Y+P
Sbjct: 127 LLTAESEKEWKEWLKT----------------SQYKP----------------------- 147
Query: 207 SSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGR 245
V + +HD I M +D G+++ +T+G +K+ GR
Sbjct: 148 --IVNIENHDCIGMIALDAQGNLSGACTTSGMAYKMHGR 184
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 44/219 (20%)
Query: 28 PIVVSTWPFXXXXXXXX-XXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETT 86
PIV+ST+ F G A+DAV +G E+ + +VG GG PD +G T
Sbjct: 5 PIVLSTFNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVT 64
Query: 87 IDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPAN 146
+DA IM+ +G+VA M +K+ I AR VM+ T H +L G+ A FA++ G N
Sbjct: 65 LDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KEN 122
Query: 147 LSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESG 206
L +AES +W +W + Y+P N
Sbjct: 123 LLTAESEKEWKEWLK----------------TSQYKPIVN-------------------- 146
Query: 207 SSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGR 245
+ +HDTI M +D G+++ +T+G +K+ GR
Sbjct: 147 -----IENHDTIGMIALDAQGNLSGACTTSGMAYKMHGR 180
>pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|A Chain A, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|C Chain C, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 151
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 28 PIVVSTWPF-XXXXXXXXXXXXGGFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETT 86
PIV+STW F G A+DAV +G E+ + +VG GG PD +G T
Sbjct: 5 PIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVT 64
Query: 87 IDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPAN 146
+DA IM+ +G+VA M +K+ I AR VM+ T H +L G+ A FA++ G N
Sbjct: 65 LDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KEN 122
Query: 147 LSSAESMDKWTKW 159
L +AES +W +W
Sbjct: 123 LLTAESEKEWKEW 135
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 40/199 (20%)
Query: 50 GFSAVDAVVEGCSTCEEL-RCDGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFV 108
G SA+D V E EE + +G + DE E +DA +M+G T++ GAVA + +
Sbjct: 45 GESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHE--LDACVMDGNTLKAGAVAGVSHL 102
Query: 109 KDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSSAESMDKWTKWRENGCQP 166
++ + AARLVM+ + H ++ GE A FA A G+ P S++ ++ R+ G
Sbjct: 103 RNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGA-- 160
Query: 167 NFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTISMAVIDKM 226
V+ G P K MG + +D
Sbjct: 161 ----TVLDHSGA-PLDEKQKMG----------------------------AVGAVALDLD 187
Query: 227 GHVAVGTSTNGATFKIPGR 245
G++A TST G T K+PGR
Sbjct: 188 GNLAAATSTGGMTNKLPGR 206
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 50 GFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVK 109
G SAVDAV EG E + G G + NGE +DA IM+G + GAV+A++ +
Sbjct: 41 GGSAVDAV-EGAVVALEDDPEFNAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIA 99
Query: 110 DGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP 142
+ I+ ARLVM+ T H L + A+ FA AMG+P
Sbjct: 100 NPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP 132
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 50 GFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVK 109
G SAVDAV EG E + G G + NGE +DA IM+G + GAV+A++ +
Sbjct: 43 GGSAVDAV-EGAVVALEDDPEFNAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIA 101
Query: 110 DGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP 142
+ I+ ARLVM+ T H L + A+ FA AMG+P
Sbjct: 102 NPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP 134
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 50 GFSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVK 109
G SAVDAV EG E + G G + NGE +DA IM+G + GAV+A++ +
Sbjct: 52 GGSAVDAV-EGAVVALEDDPEFNAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIA 110
Query: 110 DGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP 142
+ I+ ARLVM+ T H L + A+ FA AMG+P
Sbjct: 111 NPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP 143
>pdb|1JN9|A Chain A, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|C Chain C, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|A Chain A, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|C Chain C, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 177
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 49 GGFSAVDAVVEGCSTCEEL-RCDGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAMRF 107
G SA+D V E EE + +G + DE E +DA +M+G T++ GAVA +
Sbjct: 44 AGESALDVVTEAVRLLEEXPLFNAGIGAVFTRDETHE--LDACVMDGNTLKAGAVAGVSH 101
Query: 108 VKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSSAESMDKWTKWRENGC 164
+++ + AARLVM+ + H ++ GE A FA A G+ P S++ ++ R+ G
Sbjct: 102 LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGA 160
>pdb|1T3M|A Chain A, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|C Chain C, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 177
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 49 GGFSAVDAVVEGCSTCEELRC---DGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAM 105
G SA+D V E EE C + +G + DE E +DA +M+G T++ GAVA +
Sbjct: 44 AGESALDVVTEAVRLLEE--CPLFNAGIGAVFTRDETHE--LDACVMDGNTLKAGAVAGV 99
Query: 106 RFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSSAESMDKWTKWRENG 163
+++ + AARLVM+ + H ++ GE A FA A G+ P S++ ++ R+ G
Sbjct: 100 SHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEG 159
Query: 164 C 164
Sbjct: 160 A 160
>pdb|2ZAL|C Chain C, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|A Chain A, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 160
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 49 GGFSAVDAVVEGCSTCEELRC---DGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAM 105
G SA+D V E EE C + +G + DE E +DA +M+G T++ GAVA +
Sbjct: 44 AGESALDVVTEAVRLLEE--CPLFNAGIGAVFTRDETHE--LDACVMDGNTLKAGAVAGV 99
Query: 106 RFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSSAESMDKWTKWRENG 163
+++ + AARLVM+ + H ++ GE A FA A G+ P S++ ++ R+ G
Sbjct: 100 SHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEG 159
Query: 164 C 164
Sbjct: 160 A 160
>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 195
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 51 FSAVDAVVEGCSTCEELRCDGTVGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKD 110
V+ VV E G G +G ++A IM+G TM+ GAV+ + V +
Sbjct: 52 LDVVELVVRELENIEHFNA----GIGSVLTNSGTVEMEASIMDGNTMKCGAVSGLSTVLN 107
Query: 111 GIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSSAESMDKWTKWRENGCQPNF 168
I ARLVM T H LA + A FA G+ ++L +AE++++ E
Sbjct: 108 PISLARLVMDKTPHIYLAFQGAQDFAKQQGVETVDSSHLITAENVERLKLAIE------- 160
Query: 169 WKNVVPVDGCGPYQPKCNMGPSEGECPASN 198
N V VD P+ +E E P +N
Sbjct: 161 -ANRVQVDYSQYNYPEPVKDDAEKELPLTN 189
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 217 TISMAVIDKMGHVAVGTSTNGATFKIPGR 245
TI M VI K GH+A GTSTNG FKI GR
Sbjct: 1 TIGMVVIHKTGHIAAGTSTNGIKFKIHGR 29
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 74 GPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL------ 126
G G + + GE DA IM+G ++ GAV A+ +K+ + A RL+ + + L
Sbjct: 102 GMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIP 161
Query: 127 ---LAGEKASAFAIAMGLPG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQ 182
L GE A +A+ G+P P N+ + + ++ N + + V Q
Sbjct: 162 PCFLVGEGAYRWAVDHGIPSCPPNIMT--TRFSLAAFKRNKRKLELAERV----DTDFMQ 215
Query: 183 PKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKI 242
K SE E + L DT+ V+D G+VA S+ G K
Sbjct: 216 LKKRRQSSEKENDSGTL----------------DTVGAVVVDHEGNVAAAVSSGGLALKH 259
Query: 243 PGR 245
PGR
Sbjct: 260 PGR 262
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 74 GPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL------ 126
G G + + GE DA IM+G ++ GAV A+ +K+ + A RL+ + + L
Sbjct: 102 GMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIP 161
Query: 127 ---LAGEKASAFAIAMGLPG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQ 182
L GE A +A+ G+P P N+ + + ++ N + + V Q
Sbjct: 162 PCFLVGEGAYRWAVDHGIPSCPPNIMT--TRFSLAAFKRNKRKLELAERV----DTDFMQ 215
Query: 183 PKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKI 242
K SE E + L D++ V+D G+VA S+ G K
Sbjct: 216 LKKRRQSSEKENDSGTL----------------DSVGAVVVDHEGNVAAAVSSGGLALKH 259
Query: 243 PGR 245
PGR
Sbjct: 260 PGR 262
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 74 GPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL------ 126
G G + + GE DA I +G ++ GAV A+ +K+ + A RL+ + + L
Sbjct: 102 GXGSNLNLLGEIECDASIXDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIP 161
Query: 127 ---LAGEKASAFAIAMGLPG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQ 182
L GE A +A+ G+P P N+ + + ++ N + + V Q
Sbjct: 162 PCFLVGEGAYRWAVDHGIPSCPPNIXT--TRFSLAAFKRNKRKLELAERV----DTDFXQ 215
Query: 183 PKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKI 242
K SE E + L DT+ V+D G+VA S+ G K
Sbjct: 216 LKKRRQSSEKENDSGTL----------------DTVGAVVVDHEGNVAAAVSSGGLALKH 259
Query: 243 PGR 245
PGR
Sbjct: 260 PGR 262
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 74 GPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL------ 126
G G + + GE DA IM+G ++ GAV A+ +K+ + A RL+ + + L
Sbjct: 102 GMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIP 161
Query: 127 ---LAGEKASAFAIAMGLPG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQ 182
L GE A +A+ G+P P N+ + + ++ N + + V Q
Sbjct: 162 PCFLVGEGAYRWAVDHGIPSCPPNIMT--TRFSLAAFKRNKRKLELAERV----DTDFMQ 215
Query: 183 PKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKI 242
K SE E + L D + V+D G+VA S+ G K
Sbjct: 216 LKKRRQSSEKENDSGTL----------------DAVGAVVVDHEGNVAAAVSSGGLALKH 259
Query: 243 PGR 245
PGR
Sbjct: 260 PGR 262
>pdb|2QV3|A Chain A, Crystal Structure Of The Helicobacter Pylori Vacuolating
Toxin P55 Domain
Length = 457
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 82 NGETTIDALIMNG--ATMEVGAVAAMRFVKD------------GIRAARLVMQHTEHTLL 127
N + TI+ L+ G AT+ VG AAM F D I +A+ ++++TEH LL
Sbjct: 283 NNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEHVLL 342
Query: 128 AGEKASAFAIAMGLPGPANLSSAESMDKWTKWRENGCQPN--FWKNVVPVDGCG 179
+ ++ G G +N++ E + N + + +N + CG
Sbjct: 343 KAKIIGYGNVSTGTNGISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACG 396
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 91 IMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSA 150
I+ G T+ +G A +FV++G + VM H+ + GEKA A ++G P
Sbjct: 10 IITGGTLGIGLAIATKFVEEGAK----VMITDRHSDV-GEKA---AKSVGTPDQIQFFQH 61
Query: 151 ESMDK--WTK 158
+S D+ WTK
Sbjct: 62 DSSDEDGWTK 71
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 217 TISMAVIDKMGHVAVGTSTNGATFKIPGR 245
T+ +D G++A TST G T K+PGR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGR 29
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 217 TISMAVIDKMGHVAVGTSTNGATFKIPGR 245
T+ +D G++A TST G T K+PGR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGR 29
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 217 TISMAVIDKMGHVAVGTSTNGATFKIPGR 245
T+ +D G++A TST G T K+PGR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGR 29
>pdb|1PGL|1 Chain 1, Bean Pod Mottle Virus (Bpmv), Middle Component
pdb|1PGW|1 Chain 1, Bean Pod Mottle Virus (Bpmv), Top Component
Length = 185
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 73 VGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKA 132
+G G S D+ G+ L+ N + VAA K G ++VM A K
Sbjct: 35 LGGGISVDKTGDWI--TLVQNSPISNLLRVAAW---KKGCLMVKVVMSGN-----AAVKR 84
Query: 133 SAFAIAMGLPGPANLSSAESMD--KWTKWRENGCQPNFWKNVVPVDGCGP 180
S +A + + N +S E D +WTK +P+ W+ + P++ CGP
Sbjct: 85 SDWASLVQV-FLTNSNSTEHFDACRWTK-----SEPHSWELIFPIEVCGP 128
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein From
Glyoxalase Family
Length = 338
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 113 RAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTKWREN 162
R + ++H+E T A A F A GL +S+ E ++ W W ++
Sbjct: 121 RFEKFDVKHSEMTTYANRPALQFEDAEGLRLVLLVSNGEKVEHWETWEKS 170
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 91 IMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSA 150
I+ G T+ +G A +FV++G + VM H+ + GEKA A ++G P
Sbjct: 10 IITGGTLGIGLAIATKFVEEGAK----VMITGRHSDV-GEKA---AKSVGTPDQIQFFQH 61
Query: 151 ESMDK--WTK 158
+S D+ WTK
Sbjct: 62 DSSDEDGWTK 71
>pdb|1BMV|1 Chain 1, Protein-Rna Interactions In An Icosahedral Virus At 3.0
Angstroms Resolution
Length = 198
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 73 VGPGGSPDENGETTIDALIMNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKA 132
+G G S D+ G+ L+ N + VAA K G ++VM A K
Sbjct: 35 LGGGISVDKTGDWI--TLVQNSPISNLLRVAAW---KKGCLMVKVVMSGN-----AAVKR 84
Query: 133 SAFAIAMGLPGPANLSSAESMD--KWTKWRENGCQPNFWKNVVPVDGCGP 180
S +A + + N +S E D +WTK +P+ W+ + P++ CGP
Sbjct: 85 SDWASLVQV-FLTNSNSTEHFDACRWTK-----SEPHSWELIFPIEVCGP 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,462,335
Number of Sequences: 62578
Number of extensions: 301922
Number of successful extensions: 529
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 55
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)