BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025946
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6ELH4|MURC_ALISL UDP-N-acetylmuramate--L-alanine ligase OS=Aliivibrio salmonicida
(strain LFI1238) GN=murC PE=3 SV=1
Length = 487
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF++ K T D L P+ Q +DD VRE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGQAVMCIDDDVVRELLPRVSRQVITYG-- 254
Query: 217 FSD 219
FSD
Sbjct: 255 FSD 257
>sp|Q87SG3|MURC_VIBPA UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=murC PE=3 SV=1
Length = 485
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ K T D L P+ Q +DD +RE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISRQVITYG-- 254
Query: 217 FSD 219
FSD
Sbjct: 255 FSD 257
>sp|A7MXR2|MURC_VIBHB UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=murC PE=3 SV=1
Length = 485
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K T D L P+ Q +DD +RE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISRQVITYG 254
>sp|Q7MNV0|MURC_VIBVY UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio vulnificus (strain
YJ016) GN=murC PE=3 SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K T D L P+ Q +DD +RE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISRQVITYG 254
>sp|Q8DEL1|MURC_VIBVU UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio vulnificus (strain
CMCP6) GN=murC PE=3 SV=1
Length = 486
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K T D L P+ Q +DD +RE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRISRQVITYG 254
>sp|C1D5L5|MURC_LARHH UDP-N-acetylmuramate--L-alanine ligase OS=Laribacter hongkongensis
(strain HLHK9) GN=murC PE=3 SV=1
Length = 469
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESVRFSNES-TTFG 214
+I D G+DF+ K D LQ P+ + +DDK VRE + F TT+G
Sbjct: 180 NIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAVLCIDDKHVREILPFVTRPLTTYG 237
>sp|B5FB34|MURC_VIBFM UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio fischeri (strain
MJ11) GN=murC PE=3 SV=1
Length = 487
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ K T D L P+ Q VDD VRE + + S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQVSRQVITYG-- 254
Query: 217 FSD 219
FSD
Sbjct: 255 FSD 257
>sp|Q59MP1|NBP35_CANAL Cytosolic Fe-S cluster assembly factor NBP35 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=NBP35 PE=3 SV=2
Length = 331
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 164 CPNCGNDFQIFKSTLNDELQLCPYCSQPF--SVVDDKFVRESVRFSNESTTFGQAFSDFF 221
CPNC + QIFK+T +LC PF SV D + ++ G+ F D +
Sbjct: 249 CPNCKGESQIFKATTGGGKKLCEELGIPFLGSVPLDPRI-------GKACDMGECFFDSY 301
Query: 222 PGSRKGRESSTSVVDVEAEIKD 243
P S ++T+++DV ++D
Sbjct: 302 PDS----PAATAILDVVDALRD 319
>sp|Q5E2Q1|MURC_VIBF1 UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=murC PE=3 SV=1
Length = 487
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ K T D L P+ Q VDD VRE + + S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQVSRQVITYG-- 254
Query: 217 FSD 219
FSD
Sbjct: 255 FSD 257
>sp|B7VJ04|MURC_VIBSL UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio splendidus (strain
LGP32) GN=murC PE=3 SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K T D L P+ Q VDD VRE + + S + T+G
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPQVSRQVITYG 254
>sp|A5F5M8|MURC_VIBC3 UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio cholerae serotype
O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=murC PE=3
SV=1
Length = 486
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K T D L P+ Q +DD +RE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVSRQVITYG 254
>sp|Q9KPG8|MURC_VIBCH UDP-N-acetylmuramate--L-alanine ligase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=murC
PE=3 SV=2
Length = 486
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K T D L P+ Q +DD +RE + R S + T+G
Sbjct: 197 NIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRVSRQVITYG 254
>sp|Q6LMF7|MURC_PHOPR UDP-N-acetylmuramate--L-alanine ligase OS=Photobacterium profundum
GN=murC PE=3 SV=1
Length = 487
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF++ K T D L P+ VDD VRE + R + T+G
Sbjct: 198 NIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCVDDPVVRELLPRIGRQIITYG-- 255
Query: 217 FSD 219
FSD
Sbjct: 256 FSD 258
>sp|A5FSC0|NRDR_DEHSB Transcriptional repressor NrdR OS=Dehalococcoides sp. (strain BAV1)
GN=nrdR PE=3 SV=1
Length = 175
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 185 CPYCSQPFS-VVDDKFVRESVRFSNESTTFGQAFSDF 220
CPYCS P S V+D + V + VR E GQ F+ +
Sbjct: 3 CPYCSHPDSKVIDSRDVDDGVRRRRECVVCGQRFTTY 39
>sp|Q3ZZA1|NRDR_DEHSC Transcriptional repressor NrdR OS=Dehalococcoides sp. (strain
CBDB1) GN=nrdR PE=3 SV=1
Length = 175
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 185 CPYCSQPFS-VVDDKFVRESVRFSNESTTFGQAFSDF 220
CPYCS P S V+D + V + VR E GQ F+ +
Sbjct: 3 CPYCSHPDSKVIDSRDVDDGVRRRRECVVCGQRFTTY 39
>sp|A1S2G0|MURC_SHEAM UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=murC PE=3 SV=1
Length = 484
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D + P+ VDD VRE + R + T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFMHNLPFYGVAVVCVDDPVVRELIPRIGRQVVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|Q3Z9K8|NRDR_DEHE1 Transcriptional repressor NrdR OS=Dehalococcoides ethenogenes
(strain 195) GN=nrdR PE=3 SV=1
Length = 175
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 185 CPYCSQPFS-VVDDKFVRESVRFSNESTTFGQAFSDF 220
CPYCS P + V+D + V + VR E GQ F+ +
Sbjct: 3 CPYCSHPDTKVIDSRDVDDGVRRRRECVVCGQRFTTY 39
>sp|Q8E9P8|MURC_SHEON UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella oneidensis
(strain MR-1) GN=murC PE=3 SV=1
Length = 488
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ KST D L P+ +DD VRE + R S T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRISRHIVTYG 252
>sp|A9KY30|MURC_SHEB9 UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella baltica
(strain OS195) GN=murC PE=3 SV=1
Length = 488
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R + T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRQLVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|A6WID2|MURC_SHEB8 UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella baltica
(strain OS185) GN=murC PE=3 SV=1
Length = 488
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R + T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRQLVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|A3CZM2|MURC_SHEB5 UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=murC PE=3 SV=1
Length = 488
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R + T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRQLVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|B8E699|MURC_SHEB2 UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella baltica
(strain OS223) GN=murC PE=3 SV=1
Length = 488
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R + T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRQLVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|A0L1P1|MURC_SHESA UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella sp. (strain
ANA-3) GN=murC PE=3 SV=1
Length = 488
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRHMITYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|Q0HE84|MURC_SHESM UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella sp. (strain
MR-4) GN=murC PE=3 SV=1
Length = 488
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRHMITYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|Q0HZR5|MURC_SHESR UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella sp. (strain
MR-7) GN=murC PE=3 SV=1
Length = 488
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRHMITYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|Q874M2|NBP35_CANGA Cytosolic Fe-S cluster assembly factor NBP35 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=NBP35 PE=3 SV=1
Length = 334
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 164 CPNCGNDFQIFKSTLNDELQLCPYCSQPF--SVVDDKFVRESVRFSNESTTFGQAFSDFF 221
CPNC + QIFK T LC F SV D + R S+E G++F D F
Sbjct: 259 CPNCKGESQIFKPTTGGGEALCKELGIKFLGSVPLDPRIG---RCSDE----GESFLDEF 311
Query: 222 PGSRKGRESSTSVVDVEAEIKDA 244
P S ++ +V++V E++DA
Sbjct: 312 PDSP----ATLAVLNVVEELRDA 330
>sp|A1REZ7|MURC_SHESW UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella sp. (strain
W3-18-1) GN=murC PE=3 SV=1
Length = 488
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRIGRHLVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|A4Y2N7|MURC_SHEPC UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=murC PE=3 SV=1
Length = 488
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFGQA 216
+I D G DF+ KST D L P+ +DD VRE + R T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRIGRHLVTYG-- 252
Query: 217 FSD 219
FSD
Sbjct: 253 FSD 255
>sp|Q6C0G3|DPH3_YARLI Diphthamide biosynthesis protein 3 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPH3 PE=3 SV=1
Length = 69
Score = 32.3 bits (72), Expect = 3.0, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 155 ASRDIVQDSCPNCGNDFQIFKSTLND--ELQLCPYCSQPFSVVDD 197
A + I+ CP CG+ FQI L D E+ +CP CS V+ D
Sbjct: 16 ADQGILTYPCP-CGDKFQIALDDLKDGEEVAVCPSCSLMIKVIFD 59
>sp|P52920|NBP35_YEAST Cytosolic Fe-S cluster assembly factor NBP35 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NBP35 PE=1
SV=1
Length = 328
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 164 CPNCGNDFQIFKSTLNDELQLCPYCSQPF--SVVDDKFVRESVRFSNESTTFGQAFSDFF 221
CPNC + QIFK+T LC F SV D + +S G++F D +
Sbjct: 253 CPNCKGESQIFKATTGGGEALCKELGIKFLGSVPLDPRI-------GKSCDMGESFLDNY 305
Query: 222 PGSRKGRESSTSVVDVEAEIKDA 244
P S +S++V++V ++DA
Sbjct: 306 PDSP----ASSAVLNVVEALRDA 324
>sp|Q9F1M9|MURC_SHEVD UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella violacea
(strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
GN=murC PE=3 SV=2
Length = 483
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG-- 214
+I D G DF+ KST D L P+ +DD VRE + + + T+G
Sbjct: 196 NIEADHMDTYGGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVRELLPKVGRKIVTYGFS 255
Query: 215 ------------QAFSDFFPGSRKGRESSTSVVDVEAE 240
Q +S F R G E +V++ E
Sbjct: 256 EDADIQALNFVQQGYSSHFTLRRDGVEDIAVMVNLPGE 293
>sp|Q07WI6|MURC_SHEFN UDP-N-acetylmuramate--L-alanine ligase OS=Shewanella frigidimarina
(strain NCIMB 400) GN=murC PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV-RFSNESTTFG 214
+I D G DF+ K+T D L P+ +DD+ +RE + R + T+G
Sbjct: 195 NIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCIDDEVIREIMPRIGRQVVTYG 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,445,588
Number of Sequences: 539616
Number of extensions: 4132648
Number of successful extensions: 20222
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 20164
Number of HSP's gapped (non-prelim): 78
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)