Query 025946
Match_columns 245
No_of_seqs 93 out of 101
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 21:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_L ABC10-alpha, DNA-direct 96.6 0.0009 3.1E-08 49.5 2.4 31 158-192 25-55 (70)
2 2hf1_A Tetraacyldisaccharide-1 96.3 0.002 7E-08 47.2 2.6 39 157-198 3-42 (68)
3 2pk7_A Uncharacterized protein 96.2 0.0019 6.6E-08 47.4 2.2 38 158-198 4-42 (69)
4 2js4_A UPF0434 protein BB2007; 96.2 0.0021 7.2E-08 47.4 2.3 38 158-198 4-42 (70)
5 2jr6_A UPF0434 protein NMA0874 96.0 0.0031 1.1E-07 46.2 2.2 38 158-198 4-42 (68)
6 2apo_B Ribosome biogenesis pro 95.9 0.0032 1.1E-07 45.7 1.9 33 162-209 7-39 (60)
7 2jny_A Uncharacterized BCR; st 95.8 0.0037 1.3E-07 45.8 1.9 38 158-198 6-44 (67)
8 2aus_D NOP10, ribosome biogene 95.7 0.0048 1.6E-07 44.9 2.3 33 162-209 6-38 (60)
9 2lcq_A Putative toxin VAPC6; P 95.7 0.0057 1.9E-07 49.1 2.9 34 158-196 129-162 (165)
10 3a43_A HYPD, hydrogenase nicke 95.5 0.0049 1.7E-07 49.7 1.9 44 162-205 71-132 (139)
11 2kdx_A HYPA, hydrogenase/ureas 95.5 0.0074 2.5E-07 46.8 2.8 36 162-202 74-112 (119)
12 1pft_A TFIIB, PFTFIIBN; N-term 95.2 0.0078 2.7E-07 40.3 1.9 29 162-193 6-35 (50)
13 3h0g_L DNA-directed RNA polyme 95.1 0.0099 3.4E-07 43.5 2.2 33 159-195 19-51 (63)
14 1vd4_A Transcription initiatio 94.9 0.011 3.6E-07 39.3 1.9 38 163-200 16-57 (62)
15 2kpi_A Uncharacterized protein 94.8 0.014 4.8E-07 41.2 2.3 36 158-198 6-44 (56)
16 1dl6_A Transcription factor II 94.8 0.014 4.9E-07 41.1 2.4 34 158-193 7-41 (58)
17 4esj_A Type-2 restriction enzy 94.7 0.01 3.5E-07 53.5 1.7 39 154-198 30-72 (257)
18 1lko_A Rubrerythrin all-iron(I 94.4 0.013 4.6E-07 48.8 1.6 25 162-191 156-180 (191)
19 3pwf_A Rubrerythrin; non heme 94.3 0.02 6.8E-07 47.5 2.5 24 162-191 139-162 (170)
20 4ayb_P DNA-directed RNA polyme 94.3 0.02 6.7E-07 40.4 2.0 31 163-195 5-36 (48)
21 1gh9_A 8.3 kDa protein (gene M 93.4 0.024 8.1E-07 42.0 1.3 37 160-201 3-39 (71)
22 2jrp_A Putative cytoplasmic pr 92.7 0.044 1.5E-06 41.8 1.8 24 163-194 20-43 (81)
23 1vq8_Z 50S ribosomal protein L 92.7 0.049 1.7E-06 41.3 2.1 28 162-192 28-55 (83)
24 1yuz_A Nigerythrin; rubrythrin 92.6 0.055 1.9E-06 45.8 2.5 25 161-191 171-195 (202)
25 3m7n_A Putative uncharacterize 92.4 0.064 2.2E-06 44.3 2.6 28 159-191 138-165 (179)
26 1wge_A Hypothetical protein 26 92.2 0.059 2E-06 41.0 2.0 35 159-194 28-64 (83)
27 1qxf_A GR2, 30S ribosomal prot 92.2 0.088 3E-06 39.1 2.8 35 157-193 3-37 (66)
28 2jr7_A DPH3 homolog; DESR1, CS 92.0 0.048 1.7E-06 42.1 1.3 35 159-194 21-57 (89)
29 2k5r_A Uncharacterized protein 91.4 0.086 2.9E-06 41.2 2.1 42 157-198 3-69 (97)
30 3j20_W 30S ribosomal protein S 91.1 0.14 4.8E-06 37.6 2.9 34 158-193 12-45 (63)
31 6rxn_A Rubredoxin; electron tr 91.0 0.13 4.3E-06 35.3 2.4 29 163-191 6-39 (46)
32 2zjr_Z 50S ribosomal protein L 90.9 0.087 3E-06 37.8 1.6 19 163-189 32-50 (60)
33 2gmg_A Hypothetical protein PF 90.9 0.11 3.7E-06 41.4 2.3 30 159-192 65-94 (105)
34 3v2d_5 50S ribosomal protein L 90.6 0.096 3.3E-06 37.6 1.6 20 162-189 31-50 (60)
35 1yop_A KTI11P; zinc finger, me 90.6 0.074 2.5E-06 40.5 1.0 35 159-194 21-57 (83)
36 3ir9_A Peptide chain release f 90.5 0.14 4.7E-06 42.3 2.7 40 158-197 75-118 (166)
37 2l6l_A DNAJ homolog subfamily 90.0 0.096 3.3E-06 41.6 1.3 35 159-194 110-145 (155)
38 2jne_A Hypothetical protein YF 89.9 0.11 3.6E-06 41.4 1.4 35 160-194 31-73 (101)
39 3k7a_M Transcription initiatio 89.2 0.17 5.8E-06 45.3 2.3 30 161-193 21-53 (345)
40 2xzm_6 RPS27E; ribosome, trans 89.0 0.26 8.7E-06 37.8 2.9 39 158-198 29-68 (81)
41 3j20_Y 30S ribosomal protein S 89.0 0.2 7E-06 34.5 2.2 27 163-192 21-47 (50)
42 2jrp_A Putative cytoplasmic pr 88.8 0.25 8.7E-06 37.6 2.8 31 160-195 1-31 (81)
43 3u5c_b RP61, YS20, 40S ribosom 88.6 0.27 9.2E-06 37.8 2.8 39 158-198 31-70 (82)
44 3iz6_X 40S ribosomal protein S 88.6 0.31 1.1E-05 37.8 3.1 39 158-198 33-72 (86)
45 1qyp_A RNA polymerase II; tran 88.5 0.27 9.3E-06 33.7 2.5 38 157-194 11-55 (57)
46 3uk3_C Zinc finger protein 217 88.2 0.14 5E-06 31.9 0.9 31 163-193 6-43 (57)
47 2akl_A PHNA-like protein PA012 88.1 0.13 4.3E-06 42.9 0.7 27 163-193 29-55 (138)
48 4bbr_M Transcription initiatio 88.0 0.18 6.1E-06 45.6 1.7 35 156-193 15-53 (345)
49 3k1f_M Transcription initiatio 88.0 0.15 5.2E-06 44.5 1.2 29 162-193 22-53 (197)
50 1m2k_A Silent information regu 87.5 0.39 1.3E-05 41.2 3.5 31 163-194 123-154 (249)
51 2ctu_A Zinc finger protein 483 87.0 0.093 3.2E-06 33.9 -0.5 31 163-193 20-50 (73)
52 2ct7_A Ring finger protein 31; 86.8 0.35 1.2E-05 35.5 2.4 27 163-192 27-53 (86)
53 3o9x_A Uncharacterized HTH-typ 86.7 0.077 2.6E-06 40.1 -1.2 33 163-195 4-49 (133)
54 1bbo_A Human enhancer-binding 86.1 0.26 8.8E-06 30.7 1.2 31 163-193 3-40 (57)
55 1ltl_A DNA replication initiat 86.0 1 3.6E-05 39.0 5.4 48 163-215 136-186 (279)
56 1ma3_A SIR2-AF2, transcription 85.8 0.52 1.8E-05 40.5 3.3 31 162-193 124-159 (253)
57 2epq_A POZ-, at HOOK-, and zin 85.5 0.25 8.7E-06 29.7 0.9 27 163-189 12-45 (45)
58 1x6e_A Zinc finger protein 24; 85.4 0.2 6.9E-06 33.1 0.4 32 162-193 15-53 (72)
59 2drp_A Protein (tramtrack DNA- 85.0 0.35 1.2E-05 31.1 1.5 31 163-193 12-51 (66)
60 1s5p_A NAD-dependent deacetyla 84.9 0.47 1.6E-05 40.4 2.7 32 163-194 115-146 (235)
61 3flo_B DNA polymerase alpha ca 84.9 0.34 1.2E-05 41.7 1.8 33 160-193 21-60 (206)
62 2lv2_A Insulinoma-associated p 84.5 0.34 1.1E-05 35.3 1.3 31 163-193 30-67 (85)
63 2kn9_A Rubredoxin; metalloprot 84.4 0.53 1.8E-05 35.8 2.4 36 162-201 28-75 (81)
64 2adr_A ADR1; transcription reg 84.1 0.39 1.3E-05 30.2 1.4 31 163-193 4-41 (60)
65 1dx8_A Rubredoxin; electron tr 83.9 0.6 2E-05 34.3 2.4 37 162-202 8-56 (70)
66 3u50_C Telomerase-associated p 83.5 0.42 1.4E-05 40.2 1.7 30 158-191 39-68 (172)
67 1x5w_A Zinc finger protein 64, 83.4 0.39 1.3E-05 31.4 1.2 31 163-193 11-48 (70)
68 1wii_A Hypothetical UPF0222 pr 83.3 0.46 1.6E-05 36.2 1.7 34 163-196 25-61 (85)
69 3irb_A Uncharacterized protein 83.3 0.41 1.4E-05 38.5 1.5 29 156-191 42-70 (145)
70 1e8j_A Rubredoxin; iron-sulfur 82.9 0.7 2.4E-05 32.0 2.4 30 162-191 4-45 (52)
71 2d9h_A Zinc finger protein 692 82.6 0.33 1.1E-05 32.4 0.6 31 163-193 9-49 (78)
72 3h0g_I DNA-directed RNA polyme 82.4 1 3.5E-05 34.9 3.4 39 163-201 6-45 (113)
73 2kmk_A Zinc finger protein GFI 82.3 0.43 1.5E-05 31.3 1.1 11 163-173 31-41 (82)
74 1s24_A Rubredoxin 2; electron 82.2 0.57 1.9E-05 36.0 1.8 30 161-191 35-77 (87)
75 2f9y_B Acetyl-coenzyme A carbo 82.0 1.1 3.6E-05 40.1 3.8 31 161-193 24-54 (304)
76 2k4x_A 30S ribosomal protein S 81.7 0.82 2.8E-05 32.0 2.3 28 162-192 19-46 (55)
77 2ctd_A Zinc finger protein 512 81.6 0.61 2.1E-05 33.7 1.8 31 162-193 35-73 (96)
78 2v3b_B Rubredoxin 2, rubredoxi 81.5 0.69 2.3E-05 32.4 1.9 30 162-191 4-45 (55)
79 2jne_A Hypothetical protein YF 81.2 0.79 2.7E-05 36.5 2.3 21 182-202 32-52 (101)
80 2cot_A Zinc finger protein 435 81.1 0.37 1.3E-05 32.1 0.4 32 162-193 19-57 (77)
81 1yc5_A NAD-dependent deacetyla 80.9 0.79 2.7E-05 39.2 2.5 32 162-194 122-157 (246)
82 2jrr_A Uncharacterized protein 80.7 0.43 1.5E-05 35.2 0.6 18 180-197 38-55 (67)
83 3bvo_A CO-chaperone protein HS 80.1 0.9 3.1E-05 38.6 2.5 31 161-195 10-40 (207)
84 2kwq_A Protein MCM10 homolog; 80.0 1.4 4.9E-05 34.1 3.4 31 163-204 50-81 (92)
85 3p2a_A Thioredoxin 2, putative 79.7 1.4 4.8E-05 32.6 3.2 35 158-193 2-36 (148)
86 2jvm_A Uncharacterized protein 79.7 0.68 2.3E-05 35.3 1.5 17 180-196 51-67 (80)
87 2ct1_A Transcriptional repress 79.6 0.89 3E-05 30.2 1.9 31 163-193 17-56 (77)
88 2eod_A TNF receptor-associated 79.6 1.1 3.7E-05 29.2 2.3 31 162-193 11-48 (66)
89 2yt9_A Zinc finger-containing 79.6 0.45 1.6E-05 32.3 0.4 11 163-173 37-47 (95)
90 2lce_A B-cell lymphoma 6 prote 79.5 0.74 2.5E-05 30.4 1.5 31 163-193 19-56 (74)
91 2gqj_A Zinc finger protein KIA 79.1 0.45 1.5E-05 33.7 0.3 31 162-193 25-65 (98)
92 3glr_A NAD-dependent deacetyla 78.8 1.1 3.7E-05 40.0 2.7 33 162-194 140-175 (285)
93 3qt1_I DNA-directed RNA polyme 78.8 1.6 5.3E-05 35.3 3.4 38 163-200 26-64 (133)
94 3u31_A SIR2A, transcriptional 78.6 1.4 4.8E-05 39.2 3.4 32 161-193 154-192 (290)
95 3nw0_A Non-structural maintena 78.5 0.75 2.6E-05 39.7 1.6 33 163-195 195-230 (238)
96 1yk4_A Rubredoxin, RD; electro 78.4 1.3 4.6E-05 30.6 2.5 28 163-191 4-44 (52)
97 2jz8_A Uncharacterized protein 78.1 0.92 3.2E-05 35.1 1.8 18 180-197 46-63 (87)
98 2dmi_A Teashirt homolog 3; zin 78.0 1.3 4.5E-05 31.2 2.5 8 164-171 53-60 (115)
99 4ap4_A E3 ubiquitin ligase RNF 77.8 1.2 4.1E-05 32.6 2.3 33 162-194 49-84 (133)
100 3ga8_A HTH-type transcriptiona 77.4 0.42 1.4E-05 34.4 -0.3 13 181-193 35-47 (78)
101 2dmd_A Zinc finger protein 64, 77.4 0.75 2.6E-05 31.3 1.0 10 163-172 10-19 (96)
102 1nui_A DNA primase/helicase; z 77.4 1.1 3.9E-05 37.6 2.4 30 159-192 12-43 (255)
103 1twf_I B12.6, DNA-directed RNA 77.0 1.7 5.9E-05 34.0 3.1 35 163-197 6-41 (122)
104 4gzn_C ZFP-57, zinc finger pro 76.8 0.82 2.8E-05 31.1 1.1 31 163-193 6-43 (60)
105 1a1h_A QGSR zinc finger peptid 76.4 0.69 2.4E-05 31.0 0.6 11 163-173 36-46 (90)
106 2wbt_A B-129; zinc finger; 2.7 76.1 0.77 2.6E-05 33.3 0.8 31 163-193 76-111 (129)
107 2dlq_A GLI-kruppel family memb 75.6 1.1 3.8E-05 31.5 1.6 11 163-173 9-19 (124)
108 1ee8_A MUTM (FPG) protein; bet 75.1 1.1 3.8E-05 39.2 1.7 27 163-190 237-263 (266)
109 2gnr_A Conserved hypothetical 75.0 1.3 4.4E-05 35.8 2.0 29 156-191 42-70 (145)
110 1q1a_A HST2 protein; ternary c 74.9 1.3 4.5E-05 38.7 2.2 33 162-195 137-176 (289)
111 2eps_A POZ-, at HOOK-, and zin 74.9 0.83 2.9E-05 28.8 0.7 31 163-193 14-52 (54)
112 1llm_C Chimera of ZIF23-GCN4; 74.7 1 3.6E-05 30.6 1.2 31 163-193 5-42 (88)
113 3u6p_A Formamidopyrimidine-DNA 74.5 0.91 3.1E-05 39.9 1.0 26 163-189 247-272 (273)
114 3cng_A Nudix hydrolase; struct 74.4 1.8 6.2E-05 34.2 2.7 28 162-189 4-32 (189)
115 3f2b_A DNA-directed DNA polyme 74.3 2 6.7E-05 44.9 3.6 35 163-197 504-542 (1041)
116 2ee8_A Protein ODD-skipped-rel 74.1 1.3 4.4E-05 30.7 1.6 30 163-192 19-55 (106)
117 2f9i_B Acetyl-coenzyme A carbo 73.6 0.82 2.8E-05 40.6 0.5 42 161-204 30-81 (285)
118 1k82_A Formamidopyrimidine-DNA 73.5 1 3.4E-05 39.5 1.0 26 163-189 242-267 (268)
119 2xzf_A Formamidopyrimidine-DNA 73.4 1 3.4E-05 39.4 1.0 27 163-190 244-270 (271)
120 2ej4_A Zinc finger protein ZIC 73.3 1.3 4.5E-05 30.1 1.4 40 154-193 18-73 (95)
121 1k3x_A Endonuclease VIII; hydr 73.1 1 3.5E-05 39.2 1.0 26 163-189 236-261 (262)
122 2vl6_A SSO MCM N-TER, minichro 73.1 4.6 0.00016 34.5 5.1 72 163-243 143-223 (268)
123 3cc2_Z 50S ribosomal protein L 73.0 1.3 4.6E-05 35.7 1.6 28 162-192 61-88 (116)
124 2d9k_A FLN29 gene product; zin 72.9 0.63 2.1E-05 32.3 -0.3 30 162-193 18-54 (75)
125 2epr_A POZ-, at HOOK-, and zin 72.7 1.3 4.6E-05 27.0 1.2 29 162-190 13-48 (48)
126 4rxn_A Rubredoxin; electron tr 72.7 2 6.8E-05 30.2 2.2 29 163-191 5-45 (54)
127 3q87_A Putative uncharacterize 72.5 0.72 2.5E-05 37.4 -0.1 18 180-197 97-114 (125)
128 2csh_A Zinc finger protein 297 72.3 1.5 5.2E-05 30.7 1.6 31 162-192 38-75 (110)
129 1l1o_C Replication protein A 7 72.1 1.4 4.7E-05 36.2 1.5 31 158-192 40-72 (181)
130 1zfo_A LAsp-1; LIM domain, zin 71.5 1.6 5.6E-05 26.8 1.4 22 160-181 2-23 (31)
131 2k5c_A Uncharacterized protein 71.3 1.2 4.3E-05 34.8 1.0 11 163-173 53-63 (95)
132 1x6h_A Transcriptional repress 70.5 0.8 2.7E-05 30.4 -0.2 31 163-193 17-58 (86)
133 1f2i_G Fusion of N-terminal 17 70.4 1.6 5.3E-05 28.5 1.2 31 163-193 21-60 (73)
134 1h7b_A Anaerobic ribonucleotid 70.2 0.93 3.2E-05 44.4 0.1 33 156-191 535-567 (605)
135 2lk0_A RNA-binding protein 5; 69.4 2.9 0.0001 26.1 2.2 23 163-192 7-29 (32)
136 1fqt_A Rieske-type ferredoxin 69.3 2.9 9.9E-05 30.9 2.6 44 159-204 41-85 (112)
137 3h99_A Methionyl-tRNA syntheta 69.2 1.7 5.8E-05 40.7 1.6 14 157-170 151-164 (560)
138 1vk6_A NADH pyrophosphatase; 1 69.1 2.7 9.2E-05 36.5 2.7 29 160-191 106-134 (269)
139 2qpz_A Naphthalene 1,2-dioxyge 68.5 3.2 0.00011 30.1 2.7 43 160-204 40-82 (103)
140 3dqy_A Toluene 1,2-dioxygenase 68.3 2.6 9E-05 30.8 2.2 43 160-204 38-80 (106)
141 2epw_A Zinc finger protein 268 68.0 2.2 7.5E-05 25.3 1.4 26 163-188 14-46 (46)
142 3j21_g 50S ribosomal protein L 67.9 2.4 8.3E-05 29.7 1.8 24 161-191 14-37 (51)
143 1rmd_A RAG1; V(D)J recombinati 67.7 0.76 2.6E-05 34.0 -0.9 33 162-194 59-102 (116)
144 3lcz_A YCZA, inhibitor of trap 67.1 2.3 7.9E-05 29.5 1.5 26 159-191 7-32 (53)
145 2qkd_A Zinc finger protein ZPR 67.0 1.9 6.4E-05 40.7 1.4 33 160-192 219-259 (404)
146 2eme_A Zinc finger protein 473 65.4 2.6 8.9E-05 25.0 1.4 26 163-188 14-46 (46)
147 2rpc_A Zinc finger protein ZIC 65.2 0.77 2.6E-05 34.1 -1.3 40 154-193 18-73 (155)
148 2i13_A AART; DNA binding, zinc 65.1 2.3 7.8E-05 32.7 1.3 11 163-173 107-117 (190)
149 2k2d_A Ring finger and CHY zin 64.2 4.2 0.00014 30.2 2.6 31 158-191 34-64 (79)
150 2f93_B Sensory rhodopsin II tr 63.9 3.9 0.00013 33.1 2.6 33 130-162 56-88 (122)
151 1q14_A HST2 protein; histone d 63.8 2.3 7.9E-05 39.0 1.3 32 162-194 145-183 (361)
152 1wjp_A Zinc finger protein 295 63.2 1.2 4.1E-05 31.3 -0.5 30 163-193 18-53 (107)
153 2yw8_A RUN and FYVE domain-con 63.2 3.4 0.00012 30.0 1.9 33 154-192 13-45 (82)
154 2ytg_A ZFP-95, zinc finger pro 63.1 3 0.0001 24.8 1.4 26 163-188 14-46 (46)
155 2nn6_I 3'-5' exoribonuclease C 63.0 2.9 0.0001 35.4 1.7 25 162-191 170-194 (209)
156 2zze_A Alanyl-tRNA synthetase; 63.0 2.6 9.1E-05 42.5 1.7 59 154-223 10-72 (752)
157 2emk_A Zinc finger protein 28 62.9 2.7 9.4E-05 25.1 1.2 26 163-188 14-46 (46)
158 2em9_A Zinc finger protein 224 62.8 2.8 9.5E-05 24.9 1.2 11 163-173 14-24 (46)
159 2ct0_A Non-SMC element 1 homol 62.7 3.3 0.00011 30.2 1.7 35 163-197 30-67 (74)
160 3f9v_A Minichromosome maintena 62.6 6.4 0.00022 37.5 4.2 28 163-190 137-170 (595)
161 1t1h_A Gspef-atpub14, armadill 62.6 2.3 7.9E-05 29.1 0.9 29 167-195 26-56 (78)
162 2bx9_A Anti-trap, AT, tryptoph 62.5 2.6 8.9E-05 29.2 1.1 26 158-190 6-31 (53)
163 2ytr_A Zinc finger protein 347 62.4 2.5 8.7E-05 25.0 0.9 11 163-173 14-24 (46)
164 2lt7_A Transcriptional regulat 62.3 2.3 7.9E-05 32.5 0.9 11 163-173 52-62 (133)
165 2eop_A Zinc finger protein 268 61.9 2.6 8.9E-05 25.0 0.9 11 163-173 14-24 (46)
166 2ely_A Zinc finger protein 224 61.8 3.5 0.00012 24.6 1.5 11 163-173 14-24 (46)
167 3e20_C Eukaryotic peptide chai 61.7 2.3 7.8E-05 39.9 0.9 37 162-198 338-379 (441)
168 2fiy_A Protein FDHE homolog; F 61.7 3.3 0.00011 37.4 2.0 13 161-173 182-194 (309)
169 2eml_A Zinc finger protein 28 61.7 3 0.0001 24.8 1.2 11 163-173 14-24 (46)
170 2epz_A Zinc finger protein 28 61.7 3.3 0.00011 24.6 1.4 11 163-173 14-24 (46)
171 2yu8_A Zinc finger protein 347 61.6 3.4 0.00012 24.5 1.4 26 163-188 14-46 (46)
172 2emm_A ZFP-95, zinc finger pro 61.6 3 0.0001 24.7 1.1 26 163-188 14-46 (46)
173 2c2l_A CHIP, carboxy terminus 61.5 1.6 5.5E-05 35.7 -0.1 13 182-194 243-255 (281)
174 2dlk_A Novel protein; ZF-C2H2 61.3 2.4 8.1E-05 27.8 0.7 9 164-172 12-20 (79)
175 3gce_A Ferredoxin component of 61.3 5.3 0.00018 30.2 2.8 45 160-204 47-91 (121)
176 2eov_A Zinc finger protein 484 61.3 3 0.0001 24.7 1.1 11 163-173 14-24 (46)
177 2i7f_A Ferredoxin component of 61.2 3.5 0.00012 30.2 1.7 42 160-203 41-82 (108)
178 2qkd_A Zinc finger protein ZPR 61.1 2.9 0.0001 39.4 1.5 34 159-192 10-51 (404)
179 3r8s_0 50S ribosomal protein L 60.9 3.8 0.00013 28.8 1.7 19 162-189 28-46 (56)
180 2cor_A Pinch protein; LIM doma 60.9 8.3 0.00029 26.9 3.6 44 160-206 14-63 (79)
181 2gvi_A Conserved hypothetical 60.7 1.4 4.6E-05 37.2 -0.7 28 163-190 174-201 (204)
182 1vfy_A Phosphatidylinositol-3- 60.7 3.3 0.00011 29.5 1.4 26 162-192 12-37 (73)
183 2emp_A Zinc finger protein 347 60.5 3.4 0.00012 24.5 1.3 26 163-188 14-46 (46)
184 2el4_A Zinc finger protein 268 60.2 3.3 0.00011 24.5 1.2 11 163-173 14-24 (46)
185 2yso_A ZFP-95, zinc finger pro 60.0 3.8 0.00013 24.3 1.4 26 163-188 14-46 (46)
186 1l8d_A DNA double-strand break 60.0 2.7 9.2E-05 31.4 0.9 13 181-193 46-58 (112)
187 1g25_A CDK-activating kinase a 59.8 2.3 7.9E-05 28.3 0.4 29 166-194 25-55 (65)
188 2em5_A ZFP-95, zinc finger pro 59.7 3.3 0.00011 24.7 1.1 11 163-173 14-24 (46)
189 2elz_A Zinc finger protein 224 59.4 3.3 0.00011 24.7 1.1 11 163-173 14-24 (46)
190 2emh_A Zinc finger protein 484 59.3 3.4 0.00012 24.6 1.1 11 163-173 14-24 (46)
191 2em7_A Zinc finger protein 224 59.3 3.6 0.00012 24.4 1.2 11 163-173 14-24 (46)
192 3axs_A Probable N(2),N(2)-dime 59.2 5.4 0.00018 36.6 2.9 30 163-194 246-275 (392)
193 2de6_D Ferredoxin component of 59.1 5.2 0.00018 29.9 2.3 43 160-204 42-84 (115)
194 2jp9_A Wilms tumor 1; DNA bind 58.9 3.4 0.00012 28.8 1.2 11 182-192 66-76 (119)
195 1x68_A FHL5 protein; four-and- 58.8 5.3 0.00018 27.4 2.2 35 159-193 3-46 (76)
196 2emy_A Zinc finger protein 268 58.4 3.5 0.00012 24.5 1.1 11 163-173 14-24 (46)
197 2eq4_A Zinc finger protein 224 58.4 3.2 0.00011 24.6 0.9 26 163-188 14-46 (46)
198 2ene_A Zinc finger protein 347 58.3 3.7 0.00013 24.4 1.2 11 163-173 14-24 (46)
199 1x61_A Thyroid receptor intera 58.3 5.7 0.0002 26.7 2.2 43 160-203 4-53 (72)
200 1nyp_A Pinch protein; LIM doma 58.2 6.3 0.00021 26.2 2.4 44 159-204 3-52 (66)
201 2em0_A Zinc finger protein 224 58.1 3.3 0.00011 24.6 0.9 11 163-173 14-24 (46)
202 2en8_A Zinc finger protein 224 58.0 4.1 0.00014 24.1 1.3 11 163-173 14-24 (46)
203 2ytd_A Zinc finger protein 473 57.8 3.8 0.00013 24.4 1.1 26 163-188 14-46 (46)
204 3f6q_B LIM and senescent cell 57.8 4.9 0.00017 26.6 1.8 43 160-203 10-59 (72)
205 1x4k_A Skeletal muscle LIM-pro 57.7 5 0.00017 26.9 1.9 44 159-203 3-53 (72)
206 2j6a_A Protein TRM112; transla 57.7 2.6 8.9E-05 34.8 0.5 18 180-197 107-124 (141)
207 3mhs_C SAGA-associated factor 57.6 17 0.00059 28.6 5.1 38 155-193 33-81 (99)
208 2eoo_A ZFP-95, zinc finger pro 57.6 3.8 0.00013 24.4 1.1 11 163-173 14-24 (46)
209 2en6_A Zinc finger protein 268 57.5 2.9 0.0001 24.8 0.6 26 163-188 14-46 (46)
210 2enc_A Zinc finger protein 224 57.5 4.6 0.00016 24.0 1.5 11 163-173 14-24 (46)
211 2em8_A Zinc finger protein 224 57.3 4 0.00014 24.3 1.2 11 163-173 14-24 (46)
212 3pih_A Uvrabc system protein A 57.1 5.2 0.00018 40.8 2.6 38 163-200 251-294 (916)
213 1j8f_A SIRT2, sirtuin 2, isofo 56.9 4.9 0.00017 36.0 2.2 31 163-194 161-197 (323)
214 3w0f_A Endonuclease 8-like 3; 56.7 4.5 0.00016 36.4 1.9 26 163-190 253-281 (287)
215 4gop_C Putative uncharacterize 56.7 4.7 0.00016 36.8 2.1 31 158-192 305-337 (444)
216 2en1_A Zinc finger protein 224 56.6 3.6 0.00012 24.5 0.9 26 163-188 14-46 (46)
217 3riy_A NAD-dependent deacetyla 56.4 5.4 0.00018 34.8 2.3 11 162-172 135-145 (273)
218 2ytn_A Zinc finger protein 347 56.1 3.9 0.00013 24.3 1.0 11 163-173 14-24 (46)
219 1g8k_B Arsenite oxidase; molyb 56.0 11 0.00039 29.1 3.9 41 160-203 56-97 (133)
220 1twf_I B12.6, DNA-directed RNA 55.9 7.5 0.00026 30.4 2.9 40 157-196 68-114 (122)
221 3lrq_A E3 ubiquitin-protein li 55.8 2.4 8.1E-05 31.0 -0.1 32 164-195 38-71 (100)
222 2eoq_A Zinc finger protein 224 55.6 3.9 0.00013 24.3 1.0 11 163-173 14-24 (46)
223 2el6_A Zinc finger protein 268 55.2 5.3 0.00018 23.8 1.5 11 163-173 14-24 (46)
224 1x4l_A Skeletal muscle LIM-pro 55.2 6.2 0.00021 26.6 2.0 38 161-200 5-51 (72)
225 1vm9_A Toluene-4-monooxygenase 55.1 4.9 0.00017 29.5 1.6 40 160-201 40-79 (111)
226 1dvp_A HRS, hepatocyte growth 55.1 4.6 0.00016 33.7 1.6 26 162-192 162-187 (220)
227 2ct2_A Tripartite motif protei 55.1 2.6 8.9E-05 29.1 0.1 14 182-195 56-69 (88)
228 2ysp_A Zinc finger protein 224 55.1 3.4 0.00012 24.5 0.6 26 163-188 14-46 (46)
229 2ztg_A Alanyl-tRNA synthetase; 54.9 5.4 0.00018 40.2 2.3 33 154-190 13-47 (739)
230 2eoe_A Zinc finger protein 347 54.8 3.1 0.00011 24.6 0.4 26 163-188 14-46 (46)
231 3hcs_A TNF receptor-associated 54.5 6.9 0.00023 30.7 2.4 36 161-196 110-151 (170)
232 1ryq_A DNA-directed RNA polyme 54.3 6.9 0.00023 29.0 2.2 21 161-190 11-31 (69)
233 2k1p_A Zinc finger RAN-binding 54.3 6.6 0.00022 24.7 1.9 23 163-192 8-30 (33)
234 2ep2_A Zinc finger protein 484 54.1 4.9 0.00017 23.8 1.2 11 163-173 14-24 (46)
235 1p91_A Ribosomal RNA large sub 54.0 7.5 0.00026 31.3 2.6 34 162-201 3-36 (269)
236 2wbs_A Krueppel-like factor 4; 53.9 4.2 0.00014 27.0 1.0 9 182-190 65-73 (89)
237 2eq0_A Zinc finger protein 347 53.9 4.6 0.00016 24.0 1.0 11 163-173 14-24 (46)
238 4e2x_A TCAB9; kijanose, tetron 53.8 0.91 3.1E-05 39.7 -3.0 8 163-170 14-21 (416)
239 1wyh_A SLIM 2, skeletal muscle 53.7 8.7 0.0003 25.7 2.5 36 159-194 3-45 (72)
240 2ytq_A Zinc finger protein 268 53.7 5.5 0.00019 23.7 1.4 11 163-173 14-24 (46)
241 2kvf_A Zinc finger and BTB dom 53.5 4.9 0.00017 21.0 1.0 11 163-173 5-15 (28)
242 2emx_A Zinc finger protein 268 53.4 5.9 0.0002 23.2 1.5 11 163-173 12-22 (44)
243 1z2q_A LM5-1; membrane protein 53.3 5.3 0.00018 29.1 1.5 27 161-192 21-47 (84)
244 4g9i_A Hydrogenase maturation 53.3 2.6 8.9E-05 42.2 -0.2 35 163-197 158-193 (772)
245 2ebt_A Krueppel-like factor 5; 53.2 5.2 0.00018 27.1 1.4 11 182-192 75-85 (100)
246 1g47_A Pinch protein; LIM doma 53.0 9.4 0.00032 25.9 2.7 44 159-203 9-59 (77)
247 1x4u_A Zinc finger, FYVE domai 52.8 5.5 0.00019 29.0 1.5 26 162-192 15-40 (84)
248 2ytm_A Zinc finger protein 28 52.7 4.4 0.00015 24.2 0.8 11 163-173 14-24 (46)
249 2ysl_A Tripartite motif-contai 52.6 5.9 0.0002 26.5 1.5 16 181-196 56-71 (73)
250 3t7l_A Zinc finger FYVE domain 52.5 5.7 0.00019 29.4 1.6 26 162-192 21-46 (90)
251 1ubd_C Protein (YY1 zinc finge 52.4 4.8 0.00016 28.5 1.1 11 182-192 34-44 (124)
252 2kvh_A Zinc finger and BTB dom 52.3 5.3 0.00018 20.8 1.1 11 163-173 5-15 (27)
253 3jyw_9 60S ribosomal protein L 52.2 7.7 0.00026 28.9 2.2 28 162-192 27-54 (72)
254 3hct_A TNF receptor-associated 52.2 4.1 0.00014 30.4 0.7 34 163-196 55-98 (118)
255 2epx_A Zinc finger protein 28 52.1 5.1 0.00017 23.7 1.0 11 163-173 14-24 (47)
256 2emf_A Zinc finger protein 484 52.0 5.5 0.00019 23.7 1.2 11 163-173 14-24 (46)
257 2yuc_A TNF receptor-associated 51.8 5.8 0.0002 27.3 1.4 36 160-195 15-57 (76)
258 1rik_A E6APC1 peptide; E6-bind 51.8 5.5 0.00019 20.8 1.1 11 163-173 4-14 (29)
259 1ffk_W Ribosomal protein L37AE 51.4 6 0.00021 29.4 1.5 27 163-192 29-55 (73)
260 1ard_A Yeast transcription fac 51.3 5 0.00017 20.8 0.8 11 163-173 4-14 (29)
261 2kpi_A Uncharacterized protein 51.2 12 0.0004 26.1 2.9 22 181-202 9-30 (56)
262 2ehe_A Four and A half LIM dom 51.1 15 0.00053 25.2 3.6 41 161-203 15-63 (82)
263 2m0e_A Zinc finger and BTB dom 51.1 5.7 0.00019 20.4 1.0 11 182-192 2-12 (29)
264 2ecy_A TNF receptor-associated 51.0 4 0.00014 27.1 0.5 18 178-195 46-63 (66)
265 2pzi_A Probable serine/threoni 50.8 6.2 0.00021 37.0 1.9 31 163-193 36-67 (681)
266 2ep0_A Zinc finger protein 28 50.5 5.8 0.0002 23.5 1.1 11 163-173 14-24 (46)
267 3gmt_A Adenylate kinase; ssgci 50.4 9 0.00031 32.9 2.7 28 163-193 133-162 (230)
268 2ytk_A Zinc finger protein 347 50.4 6 0.0002 23.4 1.2 11 163-173 14-24 (46)
269 1znf_A 31ST zinc finger from X 50.3 5.6 0.00019 20.5 0.9 11 163-173 3-13 (27)
270 2lvu_A Zinc finger and BTB dom 55.5 3.4 0.00012 21.4 0.0 11 163-173 4-14 (26)
271 3na7_A HP0958; flagellar bioge 49.9 5 0.00017 34.3 1.0 34 162-195 199-235 (256)
272 2ckl_B Ubiquitin ligase protei 49.7 4.4 0.00015 31.8 0.6 17 178-194 86-102 (165)
273 1pvm_A Conserved hypothetical 49.4 4.5 0.00016 31.1 0.6 33 158-191 146-178 (184)
274 1wig_A KIAA1808 protein; LIM d 49.2 13 0.00046 25.5 3.0 43 160-203 4-52 (73)
275 2ema_A Zinc finger protein 347 49.1 6.3 0.00022 23.3 1.1 11 163-173 14-24 (46)
276 3p8b_A DNA-directed RNA polyme 49.1 8.3 0.00029 29.4 2.0 23 159-190 21-43 (81)
277 3vth_A Hydrogenase maturation 49.0 3.5 0.00012 41.4 -0.1 16 181-196 182-197 (761)
278 3lpe_B DNA-directed RNA polyme 48.7 7 0.00024 27.9 1.5 20 162-190 2-21 (59)
279 1tfi_A Transcriptional elongat 48.5 9.7 0.00033 25.9 2.1 33 161-193 9-48 (50)
280 3zyq_A Hepatocyte growth facto 48.5 6.3 0.00021 33.4 1.4 26 162-192 165-190 (226)
281 1paa_A Yeast transcription fac 48.5 5.9 0.0002 20.8 0.8 11 163-173 4-14 (30)
282 2cu8_A Cysteine-rich protein 2 48.4 12 0.0004 25.6 2.5 44 160-204 8-57 (76)
283 3j21_i 50S ribosomal protein L 48.3 7.3 0.00025 29.7 1.6 28 162-192 36-63 (83)
284 2m0f_A Zinc finger and BTB dom 48.1 6.6 0.00023 20.2 1.0 11 163-173 4-14 (29)
285 2ytt_A Zinc finger protein 473 47.9 4.6 0.00016 24.0 0.4 11 163-173 14-24 (46)
286 2e2z_A TIM15; protein import, 47.8 6.2 0.00021 31.1 1.2 37 159-195 11-51 (100)
287 2m0d_A Zinc finger and BTB dom 47.6 6.7 0.00023 20.3 1.0 11 163-173 5-15 (30)
288 3izc_m 60S ribosomal protein R 47.4 8 0.00027 30.0 1.7 28 162-192 37-64 (92)
289 2gag_D Heterotetrameric sarcos 47.0 3.6 0.00012 32.3 -0.3 35 183-220 4-42 (99)
290 2ytj_A Zinc finger protein 484 46.8 7.1 0.00024 23.1 1.1 11 163-173 14-24 (46)
291 2j7j_A Transcription factor II 46.7 6.2 0.00021 25.7 0.9 30 163-192 3-43 (85)
292 2i5o_A DNA polymerase ETA; zin 46.7 5.7 0.0002 26.3 0.7 16 181-196 8-23 (39)
293 2ghf_A ZHX1, zinc fingers and 46.6 4.6 0.00016 30.1 0.3 30 163-192 20-60 (102)
294 1klr_A Zinc finger Y-chromosom 46.6 6.6 0.00023 20.3 0.8 11 163-173 4-14 (30)
295 1joc_A EEA1, early endosomal a 46.5 8.8 0.0003 30.1 1.9 33 154-192 63-95 (125)
296 2kvg_A Zinc finger and BTB dom 46.3 5.3 0.00018 21.1 0.4 11 163-173 5-15 (27)
297 3fb4_A Adenylate kinase; psych 46.0 13 0.00043 29.0 2.7 31 163-194 129-159 (216)
298 2jmo_A Parkin; IBR, E3 ligase, 46.0 12 0.00041 27.0 2.4 27 163-192 27-60 (80)
299 2els_A Zinc finger protein 406 45.9 8.1 0.00028 21.5 1.2 14 180-193 7-20 (36)
300 3iz5_m 60S ribosomal protein L 45.8 8.6 0.00029 29.8 1.7 28 162-192 37-64 (92)
301 1p7a_A BF3, BKLF, kruppel-like 45.8 10 0.00034 21.2 1.6 13 181-193 10-22 (37)
302 3ttc_A HYPF, transcriptional r 45.8 4.3 0.00015 40.2 -0.0 34 163-196 69-104 (657)
303 2dj7_A Actin-binding LIM prote 45.8 15 0.0005 25.8 2.8 41 162-204 16-62 (80)
304 1dgs_A DNA ligase; AMP complex 45.8 6.6 0.00022 39.0 1.3 9 163-171 405-413 (667)
305 1cn3_F Fragment of coat protei 45.7 8.4 0.00029 24.3 1.3 22 96-117 4-25 (29)
306 4aay_B AROB; oxidoreductase, r 45.5 19 0.00065 29.7 3.8 43 159-204 98-141 (175)
307 2egp_A Tripartite motif-contai 44.3 8.4 0.00029 26.0 1.3 13 182-194 53-65 (79)
308 2elx_A Zinc finger protein 406 44.2 8.2 0.00028 21.1 1.0 11 163-173 9-19 (35)
309 4a17_Y RPL37A, 60S ribosomal p 44.1 7.9 0.00027 30.7 1.3 28 162-192 37-64 (103)
310 1dxg_A Desulforedoxin; non-hem 43.8 7.2 0.00025 24.7 0.8 26 163-194 8-35 (36)
311 2xzm_9 RPS31E; ribosome, trans 43.7 8.9 0.00031 32.6 1.6 29 162-194 114-143 (189)
312 3dl0_A Adenylate kinase; phosp 43.7 17 0.00059 28.4 3.2 32 163-195 129-160 (216)
313 1z60_A TFIIH basal transcripti 43.3 8.2 0.00028 27.5 1.1 26 163-188 32-58 (59)
314 2elt_A Zinc finger protein 406 43.3 8.7 0.0003 21.2 1.1 11 163-173 11-21 (36)
315 2ppt_A Thioredoxin-2; thiredox 43.2 20 0.00069 27.2 3.4 31 161-192 14-44 (155)
316 2elp_A Zinc finger protein 406 43.2 8.7 0.0003 21.5 1.1 11 163-173 11-21 (37)
317 1iml_A CRIP, cysteine rich int 42.6 13 0.00044 25.3 2.1 40 163-203 2-47 (76)
318 1v54_F VI, cytochrome C oxidas 42.6 12 0.00041 29.0 2.0 16 181-196 78-93 (98)
319 2ecl_A Ring-box protein 2; RNF 42.4 9.2 0.00031 26.9 1.3 17 156-172 10-26 (81)
320 2yu4_A E3 SUMO-protein ligase 42.4 8.3 0.00028 27.9 1.1 6 182-187 48-53 (94)
321 2l8e_A Polyhomeotic-like prote 42.2 6.9 0.00024 27.0 0.6 26 180-208 16-41 (49)
322 1lv3_A Hypothetical protein YA 42.0 13 0.00044 27.4 2.0 12 161-172 9-20 (68)
323 1rie_A Rieske iron-sulfur prot 41.7 14 0.00049 28.4 2.4 42 159-203 67-108 (129)
324 2egq_A FHL1 protein; LIM domai 41.4 12 0.00042 25.4 1.8 33 161-193 15-57 (77)
325 3cw2_K Translation initiation 41.1 12 0.00042 30.4 2.0 38 158-195 98-137 (139)
326 2elq_A Zinc finger protein 406 40.7 10 0.00034 21.1 1.1 11 163-173 11-21 (36)
327 2elm_A Zinc finger protein 406 40.5 11 0.00038 21.4 1.3 11 163-173 11-21 (37)
328 2lvt_A Zinc finger and BTB dom 46.5 5.9 0.0002 20.8 0.0 11 163-173 4-14 (29)
329 2d74_B Translation initiation 40.3 12 0.0004 30.9 1.7 36 162-197 105-140 (148)
330 2odx_A Cytochrome C oxidase po 40.3 11 0.00038 28.2 1.5 18 178-195 51-69 (80)
331 2avu_E Flagellar transcription 40.2 19 0.00063 31.0 3.1 30 159-189 132-161 (192)
332 3h7h_A Transcription elongatio 40.2 3.3 0.00011 33.4 -1.5 32 162-197 17-48 (120)
333 2elr_A Zinc finger protein 406 40.1 14 0.00047 20.3 1.6 14 180-193 7-20 (36)
334 2elv_A Zinc finger protein 406 39.9 10 0.00036 21.0 1.0 11 163-173 11-21 (36)
335 1srk_A Zinc finger protein ZFP 39.7 11 0.00036 20.8 1.0 11 163-173 9-19 (35)
336 1rim_A E6APC2 peptide; E6-bind 39.5 9.5 0.00033 21.3 0.8 11 163-173 4-14 (33)
337 3l11_A E3 ubiquitin-protein li 39.5 14 0.00048 27.0 2.0 28 167-194 33-62 (115)
338 2lvr_A Zinc finger and BTB dom 45.6 6.2 0.00021 20.6 0.0 12 182-193 3-14 (30)
339 1wfk_A Zinc finger, FYVE domai 39.3 12 0.00043 27.7 1.6 25 162-191 10-34 (88)
340 2cup_A Skeletal muscle LIM-pro 39.1 14 0.00047 26.3 1.8 45 160-205 4-55 (101)
341 2iyb_E Testin, TESS, TES; LIM 38.7 18 0.00062 24.1 2.3 32 162-193 3-43 (65)
342 2kfq_A FP1; protein, de novo p 38.2 8.2 0.00028 21.3 0.4 11 163-173 4-14 (32)
343 2y69_F Cytochrome C oxidase su 38.0 13 0.00044 30.3 1.7 16 181-196 109-124 (129)
344 2b9d_A E7 protein; zinc finger 37.6 3.9 0.00013 28.5 -1.3 31 160-190 7-49 (52)
345 2dkt_A Ring finger and CHY zin 37.6 14 0.00047 30.6 1.8 25 160-192 57-81 (143)
346 2owo_A DNA ligase; protein-DNA 37.5 13 0.00046 36.9 2.0 10 163-172 407-416 (671)
347 1rfs_A Rieske protein; iron-su 37.2 27 0.00093 27.3 3.4 40 160-203 63-102 (139)
348 2fiy_A Protein FDHE homolog; F 37.2 9.9 0.00034 34.3 0.9 22 163-191 210-231 (309)
349 2f2e_A PA1607; transcription f 37.1 11 0.00037 29.3 1.1 32 161-200 113-144 (146)
350 3po3_S Transcription elongatio 37.0 16 0.00055 30.4 2.1 31 163-193 139-176 (178)
351 3sr0_A Adenylate kinase; phosp 36.7 13 0.00044 30.6 1.5 24 162-193 125-148 (206)
352 4iao_A NAD-dependent histone d 36.7 8.6 0.00029 37.2 0.5 26 163-189 301-330 (492)
353 3tlx_A Adenylate kinase 2; str 36.2 21 0.00072 29.2 2.7 31 163-194 158-188 (243)
354 2elo_A Zinc finger protein 406 35.9 8.6 0.00029 21.4 0.2 11 163-173 11-21 (37)
355 1dt9_A ERF1, protein (eukaryot 35.6 11 0.00038 34.6 1.0 31 163-193 334-367 (437)
356 2hjh_A NAD-dependent histone d 35.4 9.6 0.00033 34.4 0.6 27 163-190 163-193 (354)
357 1njq_A Superman protein; zinc- 35.2 13 0.00045 21.2 1.0 11 163-173 8-18 (39)
358 1x63_A Skeletal muscle LIM-pro 34.7 23 0.00079 24.2 2.3 34 161-194 15-55 (82)
359 1y02_A CARP2, FYVE-ring finger 34.7 13 0.00043 29.5 1.1 28 160-192 18-45 (120)
360 1dgs_A DNA ligase; AMP complex 34.6 15 0.00052 36.5 1.9 19 182-201 403-421 (667)
361 3mpx_A FYVE, rhogef and PH dom 34.3 8.4 0.00029 34.1 0.0 33 154-192 369-401 (434)
362 1wd2_A Ariadne-1 protein homol 33.7 17 0.00059 25.3 1.5 26 162-192 7-36 (60)
363 2epv_A Zinc finger protein 268 33.7 15 0.0005 21.6 1.0 11 163-173 14-24 (44)
364 4glx_A DNA ligase; inhibitor, 33.0 17 0.00057 35.6 1.8 10 163-172 407-416 (586)
365 2r6f_A Excinuclease ABC subuni 32.6 22 0.00075 36.9 2.7 34 163-196 269-308 (972)
366 2owo_A DNA ligase; protein-DNA 32.6 18 0.00062 36.0 2.0 16 182-197 405-420 (671)
367 2e72_A POGO transposable eleme 32.5 3.4 0.00011 29.2 -2.3 31 160-193 11-41 (49)
368 2epc_A Zinc finger protein 32; 32.5 16 0.00054 20.9 1.0 11 163-173 13-23 (42)
369 2cur_A Skeletal muscle LIM-pro 32.4 35 0.0012 22.6 2.9 33 160-193 4-42 (69)
370 1k81_A EIF-2-beta, probable tr 32.2 13 0.00045 23.8 0.6 33 162-195 1-34 (36)
371 2ept_A Zinc finger protein 32; 31.9 16 0.00056 20.9 1.0 11 163-173 12-22 (41)
372 3u5c_f 40S ribosomal protein S 31.9 23 0.0008 28.5 2.2 28 163-194 120-150 (152)
373 2yu5_A Zinc finger protein 473 31.7 17 0.00057 21.1 1.1 11 163-173 14-24 (44)
374 1yui_A GAGA-factor; complex (D 31.6 16 0.00054 22.6 1.0 11 163-173 26-36 (54)
375 3mv2_A Coatomer subunit alpha; 31.6 19 0.00065 33.1 1.9 16 180-195 285-300 (325)
376 1rqg_A Methionyl-tRNA syntheta 31.4 15 0.0005 36.1 1.2 9 161-169 140-148 (722)
377 1pqv_S STP-alpha, transcriptio 31.3 21 0.00073 31.8 2.1 34 161-194 268-308 (309)
378 2epa_A Krueppel-like factor 10 31.3 21 0.0007 22.9 1.5 32 162-193 18-60 (72)
379 2l3k_A Rhombotin-2, linker, LI 31.2 25 0.00085 26.4 2.2 32 163-194 10-48 (123)
380 2el5_A Zinc finger protein 268 31.0 17 0.0006 20.8 1.0 11 163-173 12-22 (42)
381 2emj_A Zinc finger protein 28 30.9 17 0.0006 21.4 1.1 11 163-173 14-24 (46)
382 3vhs_A ATPase wrnip1; zinc fin 30.9 16 0.00055 23.1 0.9 12 182-193 6-17 (29)
383 1bor_A Transcription factor PM 30.8 23 0.00078 23.1 1.7 18 180-197 35-52 (56)
384 2con_A RUH-035 protein, NIN on 30.8 27 0.00091 26.2 2.2 23 163-191 17-39 (79)
385 2eoy_A Zinc finger protein 473 30.7 18 0.0006 21.4 1.0 11 163-173 14-24 (46)
386 4glx_A DNA ligase; inhibitor, 30.6 19 0.00065 35.2 1.8 16 182-197 405-420 (586)
387 2en2_A B-cell lymphoma 6 prote 30.5 17 0.00059 20.8 1.0 11 163-173 13-23 (42)
388 2yts_A Zinc finger protein 484 30.4 18 0.00061 21.1 1.0 11 163-173 14-24 (46)
389 2emi_A Zinc finger protein 484 30.3 18 0.00061 21.2 1.0 11 163-173 14-24 (46)
390 3mkr_B Coatomer subunit alpha; 30.3 18 0.00063 33.1 1.5 26 166-195 264-291 (320)
391 2eow_A Zinc finger protein 347 30.0 18 0.00061 21.1 1.0 11 163-173 14-24 (46)
392 4ddu_A Reverse gyrase; topoiso 30.0 17 0.00059 37.3 1.4 30 159-191 6-35 (1104)
393 2emb_A Zinc finger protein 473 29.9 18 0.00061 21.0 1.0 11 163-173 14-24 (44)
394 2yrj_A Zinc finger protein 473 29.6 19 0.00064 21.0 1.0 11 163-173 14-24 (46)
395 2eof_A Zinc finger protein 268 29.5 18 0.00063 20.8 1.0 11 163-173 14-24 (44)
396 2ytb_A Zinc finger protein 32; 29.4 26 0.00089 19.9 1.6 14 180-193 9-22 (42)
397 3azc_A Cytochrome B6-F complex 35.5 11 0.00039 29.8 0.0 40 160-203 57-96 (133)
398 1vzi_A Desulfoferrodoxin; ferr 29.1 16 0.00054 28.9 0.8 25 163-193 9-35 (126)
399 2en3_A ZFP-95, zinc finger pro 29.1 19 0.00067 21.1 1.0 11 163-173 14-24 (46)
400 2co8_A NEDD9 interacting prote 29.0 32 0.0011 24.0 2.3 32 162-193 16-53 (82)
401 2ytp_A Zinc finger protein 484 28.9 20 0.00067 21.1 1.0 11 163-173 14-24 (46)
402 2e9h_A EIF-5, eukaryotic trans 28.9 23 0.00078 29.5 1.7 36 162-197 104-141 (157)
403 2em4_A Zinc finger protein 28 28.7 20 0.00068 21.1 1.0 11 163-173 14-24 (46)
404 2yur_A Retinoblastoma-binding 28.7 28 0.00095 23.7 1.9 30 165-194 32-64 (74)
405 2ep3_A Zinc finger protein 484 28.6 19 0.00065 21.1 0.9 12 163-174 14-25 (46)
406 2dlo_A Thyroid receptor-intera 28.6 36 0.0012 23.3 2.5 37 162-202 16-59 (81)
407 2yte_A Zinc finger protein 473 28.5 27 0.00093 19.8 1.6 14 180-193 8-21 (42)
408 2eon_A ZFP-95, zinc finger pro 28.5 19 0.00065 21.3 0.9 12 163-174 14-25 (46)
409 2yto_A Zinc finger protein 484 28.4 20 0.00069 21.1 1.0 11 163-173 14-24 (46)
410 3d89_A Rieske domain-containin 28.4 16 0.00055 28.7 0.7 40 160-201 53-96 (157)
411 3fl2_A E3 ubiquitin-protein li 28.4 16 0.00053 27.2 0.6 16 179-194 84-99 (124)
412 2d8y_A Eplin protein; LIM doma 28.3 22 0.00075 25.1 1.4 41 162-203 16-62 (91)
413 2zet_C Melanophilin; complex, 28.1 25 0.00087 28.7 1.9 33 158-194 65-97 (153)
414 2em3_A Zinc finger protein 28 28.0 21 0.00071 20.9 1.0 11 163-173 14-24 (46)
415 2en7_A Zinc finger protein 268 28.0 27 0.00093 20.0 1.5 13 181-193 11-23 (44)
416 2ecm_A Ring finger and CHY zin 27.9 16 0.00056 22.9 0.6 9 183-191 44-52 (55)
417 1a7i_A QCRP2 (LIM1); LIM domai 27.7 32 0.0011 23.6 2.1 41 162-203 8-54 (81)
418 1e4u_A Transcriptional repress 27.5 16 0.00056 26.0 0.6 18 179-196 47-64 (78)
419 2eor_A Zinc finger protein 224 27.5 21 0.00071 20.8 1.0 11 163-173 14-24 (46)
420 2f95_B Sensory rhodopsin II tr 27.3 59 0.002 23.6 3.6 17 145-161 69-85 (163)
421 2ytf_A Zinc finger protein 268 27.2 22 0.00075 20.7 1.0 11 163-173 14-24 (46)
422 1fv5_A First zinc finger of U- 27.2 15 0.0005 22.8 0.2 11 163-173 10-20 (36)
423 2zkr_2 60S ribosomal protein L 27.1 30 0.001 27.2 2.0 26 160-191 15-40 (97)
424 3twl_A Formamidopyrimidine-DNA 27.0 20 0.00069 32.1 1.2 27 163-190 249-277 (310)
425 2em6_A Zinc finger protein 224 27.0 21 0.00072 21.0 0.9 12 162-173 13-24 (46)
426 3d00_A Tungsten formylmethanof 26.9 12 0.00041 31.4 -0.3 10 163-172 165-174 (191)
427 2eoz_A Zinc finger protein 473 26.8 17 0.00057 21.5 0.4 11 163-173 14-24 (46)
428 4aiv_A Probable nitrite reduct 26.7 21 0.0007 27.3 1.0 41 160-200 48-91 (119)
429 3sgi_A DNA ligase; HET: DNA AM 26.5 14 0.00047 36.6 0.0 28 162-192 416-447 (615)
430 2kr4_A Ubiquitin conjugation f 26.4 23 0.00078 25.2 1.2 13 182-194 48-60 (85)
431 3mkr_B Coatomer subunit alpha; 26.4 20 0.00069 32.8 1.1 24 162-190 279-302 (320)
432 2eos_A B-cell lymphoma 6 prote 26.3 30 0.001 19.8 1.5 13 181-193 10-22 (42)
433 2djb_A Polycomb group ring fin 26.3 13 0.00043 25.1 -0.2 14 182-195 50-63 (72)
434 2eoj_A Zinc finger protein 268 26.2 16 0.00053 21.2 0.2 11 163-173 14-24 (44)
435 1wgm_A Ubiquitin conjugation f 26.1 22 0.00075 26.3 1.0 13 182-194 57-69 (98)
436 2yti_A Zinc finger protein 347 26.1 29 0.00099 20.3 1.4 14 180-193 10-23 (46)
437 2enf_A Zinc finger protein 347 25.9 30 0.001 20.2 1.5 14 180-193 10-23 (46)
438 1x3z_A Peptide: N-glycanase; h 25.8 45 0.0015 30.9 3.3 21 150-170 104-128 (335)
439 3iuf_A Zinc finger protein UBI 25.8 23 0.00079 21.6 1.0 11 163-173 9-19 (48)
440 1jm7_B BARD1, BRCA1-associated 25.6 32 0.0011 25.4 1.9 12 183-194 56-67 (117)
441 2eou_A Zinc finger protein 473 25.0 32 0.0011 19.9 1.5 14 180-193 10-23 (44)
442 2eq3_A Zinc finger protein 347 25.0 17 0.00058 21.3 0.2 11 163-173 14-24 (46)
443 2em2_A Zinc finger protein 28 25.0 26 0.00087 20.6 1.0 11 163-173 14-24 (46)
444 2eq2_A Zinc finger protein 347 24.8 32 0.0011 20.0 1.5 14 180-193 10-23 (46)
445 2yth_A Zinc finger protein 224 24.7 33 0.0011 20.1 1.5 13 181-193 11-23 (46)
446 2eox_A Zinc finger protein 473 24.7 19 0.00066 20.9 0.4 11 163-173 14-24 (44)
447 2rgt_A Fusion of LIM/homeobox 24.7 38 0.0013 26.6 2.3 43 162-206 7-55 (169)
448 1chc_A Equine herpes virus-1 r 24.6 31 0.0011 22.6 1.5 12 182-193 40-51 (68)
449 3ztg_A E3 ubiquitin-protein li 24.4 21 0.00072 24.9 0.7 28 165-192 30-60 (92)
450 2epu_A Zinc finger protein 32; 24.3 20 0.00068 21.0 0.4 11 163-173 14-24 (45)
451 1j2o_A FLIN2, fusion of rhombo 24.1 39 0.0013 25.0 2.1 45 162-206 4-55 (114)
452 2l4z_A DNA endonuclease RBBP8, 23.8 26 0.0009 26.7 1.1 43 161-203 61-110 (123)
453 2ep1_A Zinc finger protein 484 23.7 35 0.0012 19.8 1.5 14 180-193 10-23 (46)
454 1zbd_B Rabphilin-3A; G protein 23.7 33 0.0011 27.4 1.7 36 159-198 53-88 (134)
455 2yrm_A B-cell lymphoma 6 prote 23.6 27 0.00093 20.3 0.9 11 163-173 12-22 (43)
456 2eq1_A Zinc finger protein 347 23.1 36 0.0012 19.8 1.5 14 180-193 10-23 (46)
457 2enh_A Zinc finger protein 28 23.0 38 0.0013 19.8 1.5 14 180-193 10-23 (46)
458 2kv1_A Methionine-R-sulfoxide 22.9 23 0.0008 28.7 0.7 23 179-201 17-39 (124)
459 2emg_A Zinc finger protein 484 22.9 39 0.0013 19.7 1.6 13 181-193 11-23 (46)
460 2dar_A PDZ and LIM domain prot 22.9 61 0.0021 22.7 2.9 32 161-193 25-62 (90)
461 1nyk_A Rieske iron-sulfur prot 22.8 40 0.0014 27.4 2.1 44 158-203 81-125 (165)
462 2eom_A ZFP-95, zinc finger pro 22.6 38 0.0013 19.9 1.5 14 180-193 10-23 (46)
463 3sgi_A DNA ligase; HET: DNA AM 22.5 19 0.00064 35.6 0.1 13 182-194 415-427 (615)
464 2c2l_A CHIP, carboxy terminus 22.4 30 0.001 28.1 1.3 22 163-193 210-231 (281)
465 2eoh_A Zinc finger protein 28 22.3 37 0.0013 19.9 1.4 13 181-193 11-23 (46)
466 2d8x_A Protein pinch; LIM doma 22.1 58 0.002 21.5 2.5 32 162-194 6-43 (70)
467 2ctt_A DNAJ homolog subfamily 22.1 47 0.0016 24.4 2.2 23 160-189 66-88 (104)
468 2en9_A Zinc finger protein 28 21.9 41 0.0014 19.7 1.5 13 181-193 11-23 (46)
469 2ea6_A Ring finger protein 4; 21.8 25 0.00086 22.8 0.6 8 163-170 58-65 (69)
470 2vrw_B P95VAV, VAV1, proto-onc 21.7 31 0.0011 30.4 1.3 26 163-192 359-384 (406)
471 2l7x_A Envelope glycoprotein; 21.6 18 0.00061 27.4 -0.2 35 162-196 6-44 (77)
472 2ect_A Ring finger protein 126 21.5 34 0.0012 23.0 1.2 11 163-173 54-64 (78)
473 2jz8_A Uncharacterized protein 21.4 65 0.0022 24.8 2.9 28 160-188 47-74 (87)
474 2kre_A Ubiquitin conjugation f 21.4 23 0.00077 26.3 0.3 13 182-194 63-75 (100)
475 1z6u_A NP95-like ring finger p 21.2 25 0.00087 27.7 0.6 18 178-195 109-126 (150)
476 1vf5_D Rieske iron-sulfur prot 21.2 50 0.0017 26.7 2.4 38 160-201 104-141 (179)
477 1weo_A Cellulose synthase, cat 21.0 26 0.0009 27.4 0.6 31 163-193 37-69 (93)
478 2emz_A ZFP-95, zinc finger pro 20.9 42 0.0014 19.6 1.5 13 181-193 11-23 (46)
479 2g2k_A EIF-5, eukaryotic trans 20.8 27 0.00093 29.5 0.7 35 163-197 98-134 (170)
480 2ewl_A Protein E7; HPV, oncopr 20.7 4.5 0.00016 28.6 -3.4 30 160-189 12-53 (56)
481 2de6_A Terminal oxygenase comp 20.3 54 0.0018 29.2 2.6 44 159-202 64-107 (392)
482 2xqn_T Testin, TESS; metal-bin 20.3 63 0.0022 23.8 2.6 37 162-200 64-109 (126)
No 1
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=96.62 E-value=0.0009 Score=49.46 Aligned_cols=31 Identities=13% Similarity=0.497 Sum_probs=25.4
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
+-++..|+.||.+|.. ...+++.||+||..+
T Consensus 25 ~~v~Y~C~~CG~~~e~----~~~d~irCp~CG~RI 55 (70)
T 1twf_L 25 ATLKYICAECSSKLSL----SRTDAVRCKDCGHRI 55 (70)
T ss_dssp CCCCEECSSSCCEECC----CTTSTTCCSSSCCCC
T ss_pred ceEEEECCCCCCccee----CCCCCccCCCCCceE
Confidence 4567799999999987 456899999999943
No 2
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.29 E-value=0.002 Score=47.19 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=31.1
Q ss_pred Ccceec-cCCCCCceeeecccccCCCcccCCCCCCceeeeCCe
Q 025946 157 RDIVQD-SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 157 rnLIE~-tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
.++++. .||+|+.++...+ .++..+||.||..|++.||-
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFDK---SKDELICKGDRLAFPIKDGI 42 (68)
T ss_dssp CCCEEECBCTTTCCBCEEET---TTTEEEETTTTEEEEEETTE
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCCcEecCCCCe
Confidence 345555 9999999887632 25789999999999999985
No 3
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.22 E-value=0.0019 Score=47.42 Aligned_cols=38 Identities=11% Similarity=0.336 Sum_probs=30.4
Q ss_pred cceec-cCCCCCceeeecccccCCCcccCCCCCCceeeeCCe
Q 025946 158 DIVQD-SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 158 nLIE~-tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
++++. .||+|+.++...+ .++..+||.||..|++.+|-
T Consensus 4 ~LLeiL~CP~ck~~L~~~~---~~~~LiC~~cg~~YPI~dGI 42 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSA---DKTELISKGAGLAYPIRDGI 42 (69)
T ss_dssp CGGGTCCCTTTCCCCEECT---TSSEEEETTTTEEEEEETTE
T ss_pred HHHhheeCCCCCCcCeEeC---CCCEEEcCCCCcEecCcCCe
Confidence 44555 8999999887632 24789999999999999985
No 4
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.21 E-value=0.0021 Score=47.35 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=30.5
Q ss_pred cceec-cCCCCCceeeecccccCCCcccCCCCCCceeeeCCe
Q 025946 158 DIVQD-SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 158 nLIE~-tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
++++. .||+|+.++...+ .++..+||+||..|++.||-
T Consensus 4 ~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQR---AQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCCCCCBCTTTCCBEEEET---TTTEEEETTTTEEEEEETTE
T ss_pred HHhhheECCCCCCcCEEeC---CCCEEEcCCCCceecCCCCe
Confidence 44555 8999999888732 24789999999999999985
No 5
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=95.97 E-value=0.0031 Score=46.22 Aligned_cols=38 Identities=8% Similarity=0.220 Sum_probs=30.2
Q ss_pred cceec-cCCCCCceeeecccccCCCcccCCCCCCceeeeCCe
Q 025946 158 DIVQD-SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 158 nLIE~-tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
++++. .||+|+.++...+ .++..+||+||..|++.||-
T Consensus 4 ~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQ---DKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp SSSCCCBCSSSCCBCEEET---TTTEEEETTTTEEEEEETTE
T ss_pred HHhhheECCCCCCcCeEeC---CCCEEEcCCCCcEecCCCCe
Confidence 44555 8999999887632 34789999999999999985
No 6
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=95.85 E-value=0.0032 Score=45.71 Aligned_cols=33 Identities=33% Similarity=0.868 Sum_probs=24.3
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEeccccccc
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESVRFSNE 209 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~~f~~~ 209 (245)
+.||+|| .|. | ..+||+||++..+ -.+++||-.
T Consensus 7 r~C~~Cg--vYT----L---k~~CP~CG~~T~~------~hParfSp~ 39 (60)
T 2apo_B 7 KKCPKCG--LYT----L---KEICPKCGEKTVI------PKPPKFSLE 39 (60)
T ss_dssp EECTTTC--CEE----S---SSBCSSSCSBCBC------CCCCCCCTT
T ss_pred eeCCCCC--CEe----c---cccCcCCCCcCCC------CCCCCCCCC
Confidence 4899998 344 3 5679999998754 468888864
No 7
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=95.75 E-value=0.0037 Score=45.83 Aligned_cols=38 Identities=11% Similarity=0.335 Sum_probs=30.2
Q ss_pred cceec-cCCCCCceeeecccccCCCcccCCCCCCceeeeCCe
Q 025946 158 DIVQD-SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 158 nLIE~-tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
++++. .||.|..++...+ .++..+||.||..|++.||-
T Consensus 6 ~LLeiL~CP~ck~~L~~~~---~~g~LvC~~c~~~YPI~dGI 44 (67)
T 2jny_A 6 QLLEVLACPKDKGPLRYLE---SEQLLVNERLNLAYRIDDGI 44 (67)
T ss_dssp GGTCCCBCTTTCCBCEEET---TTTEEEETTTTEEEEEETTE
T ss_pred HHHHHhCCCCCCCcCeEeC---CCCEEEcCCCCccccCCCCE
Confidence 44555 8999999887632 34789999999999999985
No 8
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=95.72 E-value=0.0048 Score=44.88 Aligned_cols=33 Identities=39% Similarity=0.827 Sum_probs=24.2
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEeccccccc
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESVRFSNE 209 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~~f~~~ 209 (245)
..||+|| .|. | ..+||+||++.. +..+++||-.
T Consensus 6 r~C~~Cg--~YT----L---k~~CP~CG~~t~------~ahParfSP~ 38 (60)
T 2aus_D 6 RKCPKCG--RYT----L---KETCPVCGEKTK------VAHPPRFSPE 38 (60)
T ss_dssp EECTTTC--CEE----S---SSBCTTTCSBCE------ESSCCCCCSC
T ss_pred eECCCCC--CEE----c---cccCcCCCCccC------CCCCCCCCCC
Confidence 4899998 344 2 567999999874 4568888864
No 9
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=95.69 E-value=0.0057 Score=49.13 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=24.5
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCceeeeC
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVD 196 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~ 196 (245)
..+.-.|+.||+.|-. ......||.||.++....
T Consensus 129 ~~~~y~C~~Cg~~~~~-----~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFST-----LPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp CCCCEEESSSCCEESS-----CCGGGBCTTTCCBEEECC
T ss_pred ccEEEECCCCCCcccC-----CCCCCcCCCCCCcceeCC
Confidence 3345599999998875 133469999999875443
No 10
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=95.50 E-value=0.0049 Score=49.66 Aligned_cols=44 Identities=18% Similarity=0.576 Sum_probs=28.9
Q ss_pred ccCCCCCceeeecc------cccCCC----------cccCCCCCCc-ee-eeCCeeEEeccc
Q 025946 162 DSCPNCGNDFQIFK------STLNDE----------LQLCPYCSQP-FS-VVDDKFVRESVR 205 (245)
Q Consensus 162 ~tCPnCG~eF~~~e------d~Ln~d----------~iqCPnCGE~-L~-Vd~~~F~R~~~~ 205 (245)
..|++||+++...+ +...+. +..||.||.+ +. +.++.+.=++..
T Consensus 71 ~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el~I~~ie 132 (139)
T 3a43_A 71 FKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVYVAGIK 132 (139)
T ss_dssp EEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCEEEEEEE
T ss_pred EECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCeEEEEEEE
Confidence 38999999998743 011113 6889999997 44 466666655443
No 11
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=95.47 E-value=0.0074 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=25.9
Q ss_pred ccCCCCCceeeecccccCCCcc-cCCCCCCce-e-eeCCeeEEe
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQ-LCPYCSQPF-S-VVDDKFVRE 202 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~i-qCPnCGE~L-~-Vd~~~F~R~ 202 (245)
..|++||++|.. .+.+. .||.||.+- . +.++.+.-.
T Consensus 74 ~~C~~CG~~~e~-----~~~~~~~CP~Cgs~~~~i~~G~el~i~ 112 (119)
T 2kdx_A 74 LECKDCSHVFKP-----NALDYGVCEKCHSKNVIITQGNEMRLL 112 (119)
T ss_dssp EECSSSSCEECS-----CCSTTCCCSSSSSCCCEEEESSCCEEE
T ss_pred EEcCCCCCEEeC-----CCCCCCcCccccCCCcEEecCCeEEEE
Confidence 389999999886 34467 899999873 2 455555543
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=95.21 E-value=0.0078 Score=40.33 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=22.0
Q ss_pred ccCCCCCc-eeeecccccCCCcccCCCCCCcee
Q 025946 162 DSCPNCGN-DFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~-eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
..||+||. ++.-+ -..++..|++||..++
T Consensus 6 ~~CP~C~~~~l~~d---~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYD---PERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEE---TTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEc---CCCCeEECcccCCccc
Confidence 47999998 55432 3457899999999885
No 13
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=95.07 E-value=0.0099 Score=43.47 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=25.5
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCceeee
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
-+...|..||.++... ..+++.||+||-.+-..
T Consensus 19 ~v~Y~C~~Cg~~~~l~----~~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ----AKEVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCCBCSSSCCBCCCC----SSSCCCCSSSCCCCCBC
T ss_pred CeEEECCCCCCeeecC----CCCceECCCCCcEEEEE
Confidence 4566999999998862 34799999999866443
No 14
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=94.94 E-value=0.011 Score=39.31 Aligned_cols=38 Identities=16% Similarity=0.457 Sum_probs=26.8
Q ss_pred cCCCCCceeeecccc----cCCCcccCCCCCCceeeeCCeeE
Q 025946 163 SCPNCGNDFQIFKST----LNDELQLCPYCSQPFSVVDDKFV 200 (245)
Q Consensus 163 tCPnCG~eF~~~ed~----Ln~d~iqCPnCGE~L~Vd~~~F~ 200 (245)
.||.||+.|...... ..+.+..|+.||..+...+...+
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~~~ 57 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMP 57 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccccc
Confidence 799999999863322 12357899999988776655443
No 15
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=94.81 E-value=0.014 Score=41.15 Aligned_cols=36 Identities=22% Similarity=0.570 Sum_probs=29.1
Q ss_pred cceec-cCCCCCceeeecccccCCCcccCC--CCCCceeeeCCe
Q 025946 158 DIVQD-SCPNCGNDFQIFKSTLNDELQLCP--YCSQPFSVVDDK 198 (245)
Q Consensus 158 nLIE~-tCPnCG~eF~~~ed~Ln~d~iqCP--nCGE~L~Vd~~~ 198 (245)
++++. .||.|..++... +++.+|+ .||..|++.+|-
T Consensus 6 ~lL~iL~CP~c~~~L~~~-----~~~L~C~~~~c~~~YPI~dGI 44 (56)
T 2kpi_A 6 GLLEILACPACHAPLEER-----DAELICTGQDCGLAYPVRDGI 44 (56)
T ss_dssp SCTTSCCCSSSCSCEEEE-----TTEEEECSSSCCCEEEEETTE
T ss_pred HHHhheeCCCCCCcceec-----CCEEEcCCcCCCcEEeeECCE
Confidence 34444 899999987762 3889999 999999999884
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=94.81 E-value=0.014 Score=41.07 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=23.5
Q ss_pred cceec-cCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 158 DIVQD-SCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 158 nLIE~-tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
++++. .||.||.+-... .-..++++|+.||..+.
T Consensus 7 ~ll~~~~Cp~C~~~~lv~--D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVE--DYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCCSCCSBTTBSSSCCEE--CSSSCCEECTTTCCEEC
T ss_pred hccccccCcCCCCCceeE--eCCCCeEEeCCCCCEEe
Confidence 34444 899999732221 13558999999999884
No 17
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=94.71 E-value=0.01 Score=53.53 Aligned_cols=39 Identities=38% Similarity=0.859 Sum_probs=25.6
Q ss_pred HhcCcceeccCCCCCce-eeecccccCCC---cccCCCCCCceeeeCCe
Q 025946 154 WASRDIVQDSCPNCGND-FQIFKSTLNDE---LQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~e-F~~~ed~Ln~d---~iqCPnCGE~L~Vd~~~ 198 (245)
|+.+|. -||+||.. +.-+ -|+. .-.||+|.|.++....+
T Consensus 30 Wv~~n~---yCPnCG~~~l~~f---~nN~PVaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 30 WVYRQS---YCPNCGNNPLNHF---ENNRPVADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp HHHHHC---CCTTTCCSSCEEC-------CCCEEECTTTCCEEEEEEEE
T ss_pred HHHHCC---cCCCCCChhhhhc---cCCCcccccccCCcchhheecccc
Confidence 555544 69999984 5442 2333 45799999999987654
No 18
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=94.37 E-value=0.013 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.793 Sum_probs=19.2
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
-.|++||+...+. +-|-.||.||.+
T Consensus 156 ~~C~~CG~~~~g~-----~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYVHEGT-----GAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCEEEEE-----ECCSBCTTTCCB
T ss_pred EEECCCCCEeeCC-----CCCCCCCCCcCC
Confidence 3799999987651 235599999986
No 19
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=94.30 E-value=0.02 Score=47.49 Aligned_cols=24 Identities=33% Similarity=0.836 Sum_probs=18.7
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
-.||+||+.... +-|-.||.||.+
T Consensus 139 ~~C~~CG~i~~~------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC------CCCCCCCCCCCC
Confidence 379999987653 346699999975
No 20
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=94.27 E-value=0.02 Score=40.38 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=23.6
Q ss_pred cCCCCCceeeecccccCC-CcccCCCCCCceeee
Q 025946 163 SCPNCGNDFQIFKSTLND-ELQLCPYCSQPFSVV 195 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~-d~iqCPnCGE~L~Vd 195 (245)
.|-.||++|... .|+. ..+.|||||-.+-..
T Consensus 5 ~C~rCg~~fs~~--el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 5 RCGKCWKTFTDE--QLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp CCCCTTTTCCCC--CSCCCSSSCCTTTCCSCEEC
T ss_pred EeeccCCCccHH--HHhhCCCcccCccCcEEEEE
Confidence 699999999873 3333 689999999766543
No 21
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=93.44 E-value=0.024 Score=42.04 Aligned_cols=37 Identities=19% Similarity=0.491 Sum_probs=27.9
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEE
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R 201 (245)
+=.-|| ||.-.+..+ .....+|| ||+.+.++.-.---
T Consensus 3 ~vv~C~-C~~~~~~~~---~~kT~~C~-CG~~~~~~k~rif~ 39 (71)
T 1gh9_A 3 IIFRCD-CGRALYSRE---GAKTRKCV-CGRTVNVKDRRIFG 39 (71)
T ss_dssp EEEEET-TSCCEEEET---TCSEEEET-TTEEEECCSSSCBS
T ss_pred EEEECC-CCCEEEEcC---CCcEEECC-CCCeeeeceEEEEE
Confidence 345799 999988842 33688999 99999988765433
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=92.71 E-value=0.044 Score=41.80 Aligned_cols=24 Identities=46% Similarity=1.172 Sum_probs=17.3
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.|+.|++.|.. ...||.||++|++
T Consensus 20 ~C~~C~~~~~~--------~afCPeCgq~Le~ 43 (81)
T 2jrp_A 20 HCETCAKDFSL--------QALCPDCRQPLQV 43 (81)
T ss_dssp ECTTTCCEEEE--------EEECSSSCSCCCE
T ss_pred ECccccccCCC--------cccCcchhhHHHH
Confidence 46666666555 4489999999877
No 23
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=92.71 E-value=0.049 Score=41.25 Aligned_cols=28 Identities=36% Similarity=0.825 Sum_probs=20.1
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||+||....-. ...+...||+||..+
T Consensus 28 y~Cp~CG~~~v~r---~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 28 HACPNCGEDRVDR---QGTGIWQCSYCDYKF 55 (83)
T ss_dssp EECSSSCCEEEEE---EETTEEEETTTCCEE
T ss_pred CcCCCCCCcceec---cCCCeEECCCCCCEe
Confidence 4899999854432 223678899998865
No 24
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=92.62 E-value=0.055 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.866 Sum_probs=19.7
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.-.|++||+...+ ..|-.||.||.+
T Consensus 171 ~~~C~~CG~i~~g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC------cCCCCCCCCCCC
Confidence 3489999988543 357899999986
No 25
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=92.43 E-value=0.064 Score=44.26 Aligned_cols=28 Identities=21% Similarity=0.695 Sum_probs=23.1
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.+...||.||...+- .. .+.+||+||..
T Consensus 138 vv~a~~~~~g~~m~~----~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 138 VLRALCSNCKTEMVR----EG-DILKCPECGRV 165 (179)
T ss_dssp EEECBCTTTCCBCEE----CS-SSEECSSSCCE
T ss_pred EEEecccccCCceEE----CC-CEEECCCCCCE
Confidence 456699999999877 44 89999999874
No 26
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=92.25 E-value=0.059 Score=41.03 Aligned_cols=35 Identities=37% Similarity=0.806 Sum_probs=29.5
Q ss_pred ceeccCCCCCceeeecccccCCC--cccCCCCCCceee
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDE--LQLCPYCSQPFSV 194 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d--~iqCPnCGE~L~V 194 (245)
.+...|| ||..|...++.|.++ -++||.|--.+.|
T Consensus 28 ~y~y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I~V 64 (83)
T 1wge_A 28 TYFYPCP-CGDNFAITKEDLENGEDVATCPSCSLIIKV 64 (83)
T ss_dssp EEEECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred EEEEeCC-CCCEEEECHHHHhCCCEEEECCCCceEEEE
Confidence 4667999 999999988888775 5899999887765
No 27
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=92.21 E-value=0.088 Score=39.07 Aligned_cols=35 Identities=23% Similarity=0.625 Sum_probs=27.8
Q ss_pred CcceeccCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 157 RDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 157 rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
-.++.+.||.|+++-.+|. =.+..+.|..||+.|.
T Consensus 3 S~Fm~VKCp~C~niq~VFS--hA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQVIFD--HPSTIVKCIICGRTVA 37 (66)
T ss_dssp CCEEEEECTTTCCEEEEES--SCSSCEECSSSCCEEE
T ss_pred ceeEEEECCCCCCceEEEe--cCceEEEcccCCCEEe
Confidence 3578889999999888831 2346999999999984
No 28
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=91.98 E-value=0.048 Score=42.13 Aligned_cols=35 Identities=37% Similarity=0.810 Sum_probs=29.4
Q ss_pred ceeccCCCCCceeeecccccCCC--cccCCCCCCceee
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDE--LQLCPYCSQPFSV 194 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d--~iqCPnCGE~L~V 194 (245)
.+...|| ||..|...++.|.++ -++||.|.-.+.|
T Consensus 21 ~y~ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 21 TYFYPCP-CGDNFSITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp EEEEECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred EEEEcCC-CCCEEEECHHHHhCCCEEEECCCCccEEEE
Confidence 4667999 999999988888765 5899999987766
No 29
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=91.42 E-value=0.086 Score=41.20 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=31.5
Q ss_pred Ccceec-cCCCCCceeeecccc------------------------cCCCcccCCCCCCceeeeCCe
Q 025946 157 RDIVQD-SCPNCGNDFQIFKST------------------------LNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 157 rnLIE~-tCPnCG~eF~~~ed~------------------------Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
.++++. .||.|..++..+++. ..++..+||.||..|++.+|-
T Consensus 3 ~~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGI 69 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSI 69 (97)
T ss_dssp TTTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTE
T ss_pred hHHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCC
Confidence 345555 899999988775441 114578999999999999984
No 30
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.09 E-value=0.14 Score=37.60 Aligned_cols=34 Identities=21% Similarity=0.553 Sum_probs=27.0
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
.++...||.|+++-.+| .=.+..+.|..||+.|-
T Consensus 12 ~Fm~VkCp~C~~~q~VF--Sha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 12 RFLRVKCIDCGNEQIVF--SHPATKVRCLICGATLV 45 (63)
T ss_dssp CEEEEECSSSCCEEEEE--SSCSSCEECSSSCCEEE
T ss_pred cEEEEECCCCCCeeEEE--ecCCeEEEccCcCCEEe
Confidence 46778999999988883 12346999999999885
No 31
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=90.99 E-value=0.13 Score=35.35 Aligned_cols=29 Identities=21% Similarity=0.660 Sum_probs=18.2
Q ss_pred cCCCCCceeeeccc---ccCC--CcccCCCCCCc
Q 025946 163 SCPNCGNDFQIFKS---TLND--ELQLCPYCSQP 191 (245)
Q Consensus 163 tCPnCG~eF~~~ed---~Ln~--d~iqCPnCGE~ 191 (245)
.|++||+.+--.+. .+.+ +.-+||.||.+
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 79999977652111 1122 23499999975
No 32
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=90.95 E-value=0.087 Score=37.76 Aligned_cols=19 Identities=32% Similarity=1.177 Sum_probs=16.0
Q ss_pred cCCCCCceeeecccccCCCcccCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
.||+||.. .. ..-.||+||
T Consensus 32 ~c~~cG~~-~~-------pH~vc~~CG 50 (60)
T 2zjr_Z 32 ECPQCHGK-KL-------SHHICPNCG 50 (60)
T ss_dssp ECTTTCCE-EC-------TTBCCTTTC
T ss_pred ECCCCCCE-eC-------CceEcCCCC
Confidence 89999966 33 689999999
No 33
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=90.89 E-value=0.11 Score=41.40 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=22.6
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
++...|-.||++|.. -.+.|..||.|+..-
T Consensus 65 v~p~~C~~CG~~F~~----~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKA----EINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCCC----CSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCeecc----cCCCCCCCcCCCCCc
Confidence 445599999999932 234689999998764
No 34
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=90.65 E-value=0.096 Score=37.61 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=15.8
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCC
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
..||+||..-. ..-.||+||
T Consensus 31 ~~c~~cGe~~~--------~H~vc~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMKP--------PHTVCPECG 50 (60)
T ss_dssp EECTTTCCEEC--------TTSCCTTTC
T ss_pred eECCCCCCeec--------ceEEcCCCC
Confidence 38999996332 588999999
No 35
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=90.60 E-value=0.074 Score=40.49 Aligned_cols=35 Identities=34% Similarity=0.888 Sum_probs=29.3
Q ss_pred ceeccCCCCCceeeecccccCCC--cccCCCCCCceee
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDE--LQLCPYCSQPFSV 194 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d--~iqCPnCGE~L~V 194 (245)
.+...|| ||..|...++.|.++ -++||.|.-.+.|
T Consensus 21 ~y~ypCr-CGd~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 21 MFTYPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp EEEEEET-TTEEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred EEEEeCC-CCCeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 4667999 999999988888775 6899999887765
No 36
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=90.50 E-value=0.14 Score=42.31 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=24.4
Q ss_pred cceeccCCCCCceeee----cccccCCCcccCCCCCCceeeeCC
Q 025946 158 DIVQDSCPNCGNDFQI----FKSTLNDELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~----~ed~Ln~d~iqCPnCGE~L~Vd~~ 197 (245)
..+...||+||+.-.. ....-..+...||.||+++++.+.
T Consensus 75 ~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~ 118 (166)
T 3ir9_A 75 ERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDV 118 (166)
T ss_dssp EEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEE
T ss_pred eEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhH
Confidence 3445689999975322 001011234579999999987764
No 37
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=90.04 E-value=0.096 Score=41.62 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=28.3
Q ss_pred ceeccCCCCCceeeecccccCC-CcccCCCCCCceee
Q 025946 159 IVQDSCPNCGNDFQIFKSTLND-ELQLCPYCSQPFSV 194 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~-d~iqCPnCGE~L~V 194 (245)
.+...|| ||..|...++.+++ ..+.||+|...+.|
T Consensus 110 ~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 110 SFYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLIIEL 145 (155)
T ss_dssp EEEEECS-SSCEEEEETTHHHHCCEEECSSSSCEEEE
T ss_pred EEEEcCC-CCCeEEecHHHhCCCCEEECCCCceEEEE
Confidence 4556999 99999998777764 47999999988765
No 38
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=89.91 E-value=0.11 Score=41.43 Aligned_cols=35 Identities=29% Similarity=0.669 Sum_probs=21.8
Q ss_pred eeccCCCCCceeeeccccc-----CC---CcccCCCCCCceee
Q 025946 160 VQDSCPNCGNDFQIFKSTL-----ND---ELQLCPYCSQPFSV 194 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~L-----n~---d~iqCPnCGE~L~V 194 (245)
|+..||.|..+..-..... ++ -+..||.|+++|++
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHH
Confidence 7788999988865421111 11 15678888888865
No 39
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=89.16 E-value=0.17 Score=45.28 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=22.4
Q ss_pred eccCCCCCce---eeecccccCCCcccCCCCCCcee
Q 025946 161 QDSCPNCGND---FQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 161 E~tCPnCG~e---F~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
...||+||.+ +..+ ...++.+|..||.+++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D---~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVER---FSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCC---SSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEE---CCCCCEecCCCCeEcc
Confidence 3479999985 2221 3568999999999985
No 40
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=88.98 E-value=0.26 Score=37.82 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=29.7
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCcee-eeCCe
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS-VVDDK 198 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~-Vd~~~ 198 (245)
.++.+.||.|+++-.++. =..+.+.|..||+.|- ..+|+
T Consensus 29 ~Fm~VkCp~C~n~q~VFS--hA~t~V~C~~Cg~~L~~PTGGK 68 (81)
T 2xzm_6 29 YFMDVKCAQCQNIQMIFS--NAQSTIICEKCSAILCKPTGGK 68 (81)
T ss_dssp CEEEEECSSSCCEEEEET--TCSSCEECSSSCCEEEEECSSC
T ss_pred cEEEeECCCCCCeeEEEe--cCccEEEccCCCCEEeecCCCC
Confidence 567789999999988842 2347999999999985 44554
No 41
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.96 E-value=0.2 Score=34.47 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=19.0
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.||.||....-. -+.+-..||.||-..
T Consensus 21 ~CP~CG~~~fm~---~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMA---DHGDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEE---ECSSEEECSSSCCEE
T ss_pred cCCCCCCceEEe---cCCCeEECCCCCCEE
Confidence 799999753331 345788999998654
No 42
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.79 E-value=0.25 Score=37.59 Aligned_cols=31 Identities=26% Similarity=0.703 Sum_probs=21.9
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeee
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
|+.+||.|..+..- +....+|+.|++.+...
T Consensus 1 M~~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~ 31 (81)
T 2jrp_A 1 MEITCPVCHHALER-----NGDTAHCETCAKDFSLQ 31 (81)
T ss_dssp CCCCCSSSCSCCEE-----CSSEEECTTTCCEEEEE
T ss_pred CCCCCCCCCCcccc-----CCCceECccccccCCCc
Confidence 45789999988765 33466799997755443
No 43
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=88.64 E-value=0.27 Score=37.79 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=29.3
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCcee-eeCCe
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS-VVDDK 198 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~-Vd~~~ 198 (245)
.++.+.||.|+++-.++. =.+..+.|..||+.|- ..+|+
T Consensus 31 ~Fm~VkCp~C~~~q~VFS--ha~t~V~C~~Cg~~L~~PTGGK 70 (82)
T 3u5c_b 31 YFLDVKCPGCLNITTVFS--HAQTAVTCESCSTILCTPTGGK 70 (82)
T ss_dssp CEEEEECTTSCSCEEEES--BCSSCCCCSSSCCCCEECCSSB
T ss_pred cEEEEECCCCCCeeEEEe--cCCeEEEccccCCEEeccCCCC
Confidence 457789999999888841 2347999999999886 44444
No 44
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.60 E-value=0.31 Score=37.76 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=29.1
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCcee-eeCCe
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS-VVDDK 198 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~-Vd~~~ 198 (245)
.++.+.||.|+++-.++. =....+.|..||+.|- ..+|+
T Consensus 33 ~Fm~VkCp~C~~~~~VFS--hA~t~V~C~~CgtvL~~PTGGK 72 (86)
T 3iz6_X 33 FFMDVKCQGCFNITTVFS--HSQTVVVCPGCQTVLCQPTGGK 72 (86)
T ss_dssp CEEEEECTTTCCEEEEET--TCSSCCCCSSSCCCCSCCCSSS
T ss_pred cEeEEECCCCCCeeEEEe--cCCcEEEccCCCCEeecCCCCC
Confidence 567789999999888831 2346999999999885 34443
No 45
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=88.48 E-value=0.27 Score=33.68 Aligned_cols=38 Identities=26% Similarity=0.573 Sum_probs=23.8
Q ss_pred CcceeccCCCCCceeeecccc-c--CCCc----ccCCCCCCceee
Q 025946 157 RDIVQDSCPNCGNDFQIFKST-L--NDEL----QLCPYCSQPFSV 194 (245)
Q Consensus 157 rnLIE~tCPnCG~eF~~~ed~-L--n~d~----iqCPnCGE~L~V 194 (245)
-+..+..||.||..-..+.++ + .+.+ ..|++||..+..
T Consensus 11 ~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred CCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 344567899999765543332 1 2223 589999987654
No 46
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=88.21 E-value=0.14 Score=31.89 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=22.4
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.||+.|....++ ..+.+..||.|+..+.
T Consensus 6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp BCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred cCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 799999998763322 1245789999988664
No 47
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=88.11 E-value=0.13 Score=42.91 Aligned_cols=27 Identities=30% Similarity=0.978 Sum_probs=22.3
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
.||.|+.+++- -..+..+||.|+-.+.
T Consensus 29 ~CP~C~seytY----eDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYTY----EDGALLVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCCE----ECSSSEEETTTTEEEC
T ss_pred CCCCCCCcceE----ecCCeEECCccccccC
Confidence 89999988876 2346899999998885
No 48
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=87.99 E-value=0.18 Score=45.56 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=21.9
Q ss_pred cCcce-eccCCCCCc---eeeecccccCCCcccCCCCCCcee
Q 025946 156 SRDIV-QDSCPNCGN---DFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 156 ~rnLI-E~tCPnCG~---eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
+-|+. ...||.||. .+..+ ...++.+|..||-+++
T Consensus 15 ~~~l~~~~~Cp~C~~~~~~lv~D---~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 15 GPNLNIVLTCPECKVYPPKIVER---FSEGDVVCALCGLVLS 53 (345)
T ss_dssp -------CCCSSCCCSSCCEEEE---GGGTEEEETTTCBEEE
T ss_pred CcccccCCcCCCCCCCCCceeEE---CCCCcEEeCCCCCCcc
Confidence 34444 348999995 33221 4668999999999885
No 49
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.15 Score=44.46 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=21.8
Q ss_pred ccCCCCCce---eeecccccCCCcccCCCCCCcee
Q 025946 162 DSCPNCGND---FQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~e---F~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
..||.||.. +..+ -..++.+|.+||.+++
T Consensus 22 ~~CPECGs~~t~IV~D---~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 22 LTCPECKVYPPKIVER---FSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCTTTCCSSCCEEEE---GGGTEEEETTTCBBCC
T ss_pred eECcCCCCcCCeEEEe---CCCCEEEEcCCCCCcC
Confidence 389999972 3221 4568999999999884
No 50
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=87.46 E-value=0.39 Score=41.19 Aligned_cols=31 Identities=26% Similarity=0.632 Sum_probs=21.2
Q ss_pred cCCCCCceeeecccccCCC-cccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLNDE-LQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d-~iqCPnCGE~L~V 194 (245)
.|..|++++.. ++.+..+ .-.||.||..+..
T Consensus 123 ~C~~C~~~~~~-~~~~~~~~~p~C~~Cgg~lrP 154 (249)
T 1m2k_A 123 RCTSCNNSFEV-ESAPKIPPLPKCDKCGSLLRP 154 (249)
T ss_dssp EESSSSCEEEC-SSCCCSSSCCBCSSSSSBEEE
T ss_pred EeCCCCCcccc-hhhccCCCCCCCCCCCCCcCC
Confidence 89999986543 3334433 5699999977643
No 51
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.04 E-value=0.093 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=22.9
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
.|+.||+.|....++..+.+..|+.||..+.
T Consensus 20 ~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~ 50 (73)
T 2ctu_A 20 KCSKCGIIFIRRSTLSRRKTPMCEKCRKDSC 50 (73)
T ss_dssp ECSSSCCEEECCCCCCCSSSCCCHHHHHTCS
T ss_pred eCCcccchhCCHHHhCcCCCCCCCCCChhhc
Confidence 7999999998744443456788999976553
No 52
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=86.79 E-value=0.35 Score=35.49 Aligned_cols=27 Identities=30% Similarity=0.664 Sum_probs=19.5
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
-||.|++-+....+ ...++||.|+..+
T Consensus 27 wCP~C~~~~~~~~~---~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSFGFIYERE---QLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCCCEECCCS---CSCEECTTTCCEE
T ss_pred ECcCCCchheecCC---CCceEeCCCCCcc
Confidence 39999987766322 3468899998765
No 53
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=86.66 E-value=0.077 Score=40.07 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=20.9
Q ss_pred cCCCCCce-ee----------eccc-ccCC-CcccCCCCCCceeee
Q 025946 163 SCPNCGND-FQ----------IFKS-TLND-ELQLCPYCSQPFSVV 195 (245)
Q Consensus 163 tCPnCG~e-F~----------~~ed-~Ln~-d~iqCPnCGE~L~Vd 195 (245)
.||.||.. .. ..+. ++.+ .-..||.||+.+...
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH
Confidence 69999975 11 1111 2333 467899999988543
No 54
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=86.07 E-value=0.26 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=21.7
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.||+.|....++ ..+.+..|+.||..+.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 699999998763222 1234789999987663
No 55
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=86.03 E-value=1 Score=39.00 Aligned_cols=48 Identities=21% Similarity=0.538 Sum_probs=28.5
Q ss_pred cCCCCCceeeecccc-cCCCcccCCCCCCc-eeeeCCeeEEecccccc-ccccccc
Q 025946 163 SCPNCGNDFQIFKST-LNDELQLCPYCSQP-FSVVDDKFVRESVRFSN-ESTTFGQ 215 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln~d~iqCPnCGE~-L~Vd~~~F~R~~~~f~~-~~~~~~~ 215 (245)
.|+.||.+.+..-+. --..|..||+|+.. +.+ ..+...|.+ |.-.-++
T Consensus 136 ~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l-----~~~~s~f~D~Q~ikiQE 186 (279)
T 1ltl_A 136 ECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRL-----LQDESEFLDTQTLKLQE 186 (279)
T ss_dssp EETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEE-----CGGGCEEEEEEEEEEEC
T ss_pred EcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEE-----eccccEEEeeEEEEEec
Confidence 899999987763211 11247899999975 222 223455666 4444444
No 56
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=85.76 E-value=0.52 Score=40.54 Aligned_cols=31 Identities=16% Similarity=0.499 Sum_probs=20.5
Q ss_pred ccCCCCCceeeeccccc----CCCcccCCCCCC-cee
Q 025946 162 DSCPNCGNDFQIFKSTL----NDELQLCPYCSQ-PFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~L----n~d~iqCPnCGE-~L~ 193 (245)
..|+.|++++ ..++.+ ....-.||.||. .+.
T Consensus 124 ~~C~~C~~~~-~~~~~~~~~~~~~~p~C~~Cgg~~lr 159 (253)
T 1ma3_A 124 LDCLDCHETY-DWSEFVEDFNKGEIPRCRKCGSYYVK 159 (253)
T ss_dssp EEETTTCCEE-EGGGTHHHHHTTCCCCCTTTCCSCEE
T ss_pred eeeCCCCCcC-cHHHHHHHhccCCCCCCCCCCCcccc
Confidence 3899999874 434433 223568999997 553
No 57
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=85.46 E-value=0.25 Score=29.73 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=19.0
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCS 189 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCG 189 (245)
.|+.||+.|.....+ ..+.+..||.||
T Consensus 12 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp EETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred cCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 799999998763222 123478899997
No 58
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=85.36 E-value=0.2 Score=33.14 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=22.6
Q ss_pred ccCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
-.|+.|++.|....++ ..+.+..|+.|+..+.
T Consensus 15 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp EECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred ccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 3799999999763222 1235789999987653
No 59
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=85.00 E-value=0.35 Score=31.10 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=22.1
Q ss_pred cCCCCCceeeecccc---------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST---------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~---------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.||+.|....+. -.+.+..||.||..+.
T Consensus 12 ~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred ECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 799999999763221 1235789999987664
No 60
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=84.93 E-value=0.47 Score=40.37 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=14.9
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.|..|++++...+++.......||.||..+..
T Consensus 115 ~C~~C~~~~~~~~~~~~~~~p~c~~Cgg~lrP 146 (235)
T 1s5p_A 115 RCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRP 146 (235)
T ss_dssp EETTTCCEEECCSCCCSSCCC-------CEEE
T ss_pred EeCCCCCcccchhhccCCCCCCCCCCCCeecC
Confidence 79999986554332333345689999876654
No 61
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=84.86 E-value=0.34 Score=41.73 Aligned_cols=33 Identities=30% Similarity=0.695 Sum_probs=22.7
Q ss_pred eeccCCCCCceeeecccccC-------CCcccCCCCCCcee
Q 025946 160 VQDSCPNCGNDFQIFKSTLN-------DELQLCPYCSQPFS 193 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln-------~d~iqCPnCGE~L~ 193 (245)
+.-+||.|+.++. ++.+.. .+.++||+|+++++
T Consensus 21 l~l~Cp~C~~~~~-F~gv~~~~~~~~~~sg~~C~~C~~~~~ 60 (206)
T 3flo_B 21 LELSCPSCDKRFP-FGGIVSSNYYRVSYNGLQCKHCEQLFT 60 (206)
T ss_dssp EEEECTTTCCEEE-ECSSSCCSSEEEETTEEEETTTCCBCC
T ss_pred eEEECCCCCCccC-CCCcccCCCcccccccccCCCCCCcCC
Confidence 4459999998765 444432 23578999999753
No 62
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=84.52 E-value=0.34 Score=35.26 Aligned_cols=31 Identities=29% Similarity=0.728 Sum_probs=22.7
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.||.||+.|..-..+ -.+-+..|+.|+..|.
T Consensus 30 ~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp ECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred ECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeC
Confidence 799999999873332 1224789999988764
No 63
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=84.44 E-value=0.53 Score=35.77 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=21.5
Q ss_pred ccCCCCCceeeeccc----------ccCC--CcccCCCCCCceeeeCCeeEE
Q 025946 162 DSCPNCGNDFQIFKS----------TLND--ELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed----------~Ln~--d~iqCPnCGE~L~Vd~~~F~R 201 (245)
-.|++||+.+...+. .+++ +.-.||.||.+ ..+|+.
T Consensus 28 y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~----K~~F~~ 75 (81)
T 2kn9_A 28 FRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA----KSDFEM 75 (81)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC----GGGEEE
T ss_pred EEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC----HHHcEE
Confidence 489999988442110 0122 23489999985 445554
No 64
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=84.08 E-value=0.39 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=21.7
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ ..+.+..||.|+..+.
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 799999999763322 1234789999987653
No 65
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=83.87 E-value=0.6 Score=34.26 Aligned_cols=37 Identities=24% Similarity=0.619 Sum_probs=22.1
Q ss_pred ccCCCCCceeeeccc----------ccC--CCcccCCCCCCceeeeCCeeEEe
Q 025946 162 DSCPNCGNDFQIFKS----------TLN--DELQLCPYCSQPFSVVDDKFVRE 202 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed----------~Ln--~d~iqCPnCGE~L~Vd~~~F~R~ 202 (245)
-.|++||+...-.+- .+. .+.-.||.||.+ ..+|+..
T Consensus 8 y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~----K~~F~~~ 56 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP----KNQFKSI 56 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB----GGGEEEC
T ss_pred EEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC----HHHceEc
Confidence 489999987432110 011 233489999985 4566654
No 66
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=83.47 E-value=0.42 Score=40.16 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=25.2
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
+.+-..||+|.++... ..++.-.|+.|++.
T Consensus 39 ~~~Y~ACp~CnKKV~~----~~~g~~~CekC~~~ 68 (172)
T 3u50_C 39 KLYYYRCTCQGKSVLK----YHGDSFFCESCQQF 68 (172)
T ss_dssp CCEEEECTTSCCCEEE----ETTTEEEETTTTEE
T ss_pred cEEehhchhhCCEeee----CCCCeEECCCCCCC
Confidence 6777899999999985 35578899999987
No 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.40 E-value=0.39 Score=31.44 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=21.9
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ -.+.+..|+.|+..+.
T Consensus 11 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 11 KCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp ECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred ECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 799999998763322 1234789999987653
No 68
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=83.29 E-value=0.46 Score=36.17 Aligned_cols=34 Identities=21% Similarity=0.567 Sum_probs=23.4
Q ss_pred cCCCCCcee--ee-cccccCCCcccCCCCCCceeeeC
Q 025946 163 SCPNCGNDF--QI-FKSTLNDELQLCPYCSQPFSVVD 196 (245)
Q Consensus 163 tCPnCG~eF--~~-~ed~Ln~d~iqCPnCGE~L~Vd~ 196 (245)
+||.|+.+- .. .+-.-+-..+.|-+||+.++..=
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i 61 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPI 61 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEEC
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEecc
Confidence 899999982 22 11112336999999999887643
No 69
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=83.28 E-value=0.41 Score=38.46 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=23.7
Q ss_pred cCcceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 156 SRDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 156 ~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
..+++=..|+.||+.++- ....||.||..
T Consensus 42 ~grL~~~rC~~CG~~~~P-------Pr~~Cp~C~s~ 70 (145)
T 3irb_A 42 QNKIIGSKCSKCGRIFVP-------ARSYCEHCFVK 70 (145)
T ss_dssp TTCCEEEECTTTCCEEES-------CCSEETTTTEE
T ss_pred cCeEEEEEeCCCCcEEcC-------chhhCcCCCCC
Confidence 446777799999998887 67889999963
No 70
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=82.87 E-value=0.7 Score=32.05 Aligned_cols=30 Identities=23% Similarity=0.633 Sum_probs=17.8
Q ss_pred ccCCCCCceeeeccc----------ccC--CCcccCCCCCCc
Q 025946 162 DSCPNCGNDFQIFKS----------TLN--DELQLCPYCSQP 191 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed----------~Ln--~d~iqCPnCGE~ 191 (245)
-.|++||+..--.+. .++ .+.-.||.||.+
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 379999987432110 011 223389999985
No 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.57 E-value=0.33 Score=32.35 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=21.7
Q ss_pred cCCCCCceeeeccccc----------CCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTL----------NDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L----------n~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|.....+. .+.+..|+.||..+.
T Consensus 9 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred ECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhC
Confidence 7999999997632221 135789999987653
No 72
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.44 E-value=1 Score=34.88 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=28.5
Q ss_pred cCCCCCceeeeccccc-CCCcccCCCCCCceeeeCCeeEE
Q 025946 163 SCPNCGNDFQIFKSTL-NDELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-n~d~iqCPnCGE~L~Vd~~~F~R 201 (245)
-||.||.-++..++.- +.....|++||-..++++..-.+
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~ 45 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYR 45 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCSEEEE
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCCeEEE
Confidence 5999999999843321 22379999999999888754443
No 73
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=82.30 E-value=0.43 Score=31.33 Aligned_cols=11 Identities=36% Similarity=1.066 Sum_probs=5.9
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 31 ~C~~C~~~f~~ 41 (82)
T 2kmk_A 31 PCQYCGKRFHQ 41 (82)
T ss_dssp ECSSSCCEESS
T ss_pred eCCcCChhhCC
Confidence 45555555543
No 74
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=82.16 E-value=0.57 Score=36.02 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=18.4
Q ss_pred eccCCCCCceeeeccc-----------ccCC--CcccCCCCCCc
Q 025946 161 QDSCPNCGNDFQIFKS-----------TLND--ELQLCPYCSQP 191 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed-----------~Ln~--d~iqCPnCGE~ 191 (245)
.-.|++||+. |+-+. .+.+ +.-.||.||.+
T Consensus 35 ~y~C~vCGyv-YD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHI-YDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEE-EETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeE-ecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 3489999977 44210 0112 33489999974
No 75
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=82.01 E-value=1.1 Score=40.14 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=23.5
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
...||+|+...|. ..|.+...+||.|+-...
T Consensus 24 ~~kc~~~~~~~~~--~~l~~~~~v~~~~~~~~r 54 (304)
T 2f9y_B 24 WTKCDSCGQVLYR--AELERNLEVCPKCDHHMR 54 (304)
T ss_dssp EECCTTTCCCEET--THHHHTTTBCTTTCCBCC
T ss_pred HHhhhhccchhhH--HHHHHHhCCCCCCCCCCC
Confidence 4589999999997 123456799999987543
No 76
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=81.66 E-value=0.82 Score=32.00 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=18.1
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
..||.||...... -..+-..|+.||-..
T Consensus 19 ~fCPkCG~~~~ma---~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLA---EHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCE---ECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEe---ccCCEEECCCCCCEE
Confidence 4788888743320 234688888888764
No 77
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=81.60 E-value=0.61 Score=33.66 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=22.0
Q ss_pred ccCCCCCcee-eeccccc-------CCCcccCCCCCCcee
Q 025946 162 DSCPNCGNDF-QIFKSTL-------NDELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF-~~~ed~L-------n~d~iqCPnCGE~L~ 193 (245)
..|+.||+.| ... ..| .+.+..|+.||..+.
T Consensus 35 ~~C~~C~k~F~~~~-~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 35 VSCPTCQAVGRKTI-EGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp EECTTTCSCEESSH-HHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred cCCCCCCCCcccCH-HHHHHHHHHHCCCCeECCCCCCeeC
Confidence 3899999999 431 111 345889999988763
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=81.47 E-value=0.69 Score=32.44 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=18.1
Q ss_pred ccCCCCCceeeeccc----------ccC--CCcccCCCCCCc
Q 025946 162 DSCPNCGNDFQIFKS----------TLN--DELQLCPYCSQP 191 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed----------~Ln--~d~iqCPnCGE~ 191 (245)
-.|++||+...-.+. .+. .+.-.||.||.+
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 379999987433110 011 233489999985
No 79
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=81.15 E-value=0.79 Score=36.45 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.8
Q ss_pred cccCCCCCCceeeeCCeeEEe
Q 025946 182 LQLCPYCSQPFSVVDDKFVRE 202 (245)
Q Consensus 182 ~iqCPnCGE~L~Vd~~~F~R~ 202 (245)
+..||.|.++++.+++.|.-+
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~ 52 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCR 52 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEET
T ss_pred cccCccCCCcceecCCEEECc
Confidence 378999999998888877544
No 80
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=81.12 E-value=0.37 Score=32.10 Aligned_cols=32 Identities=22% Similarity=0.561 Sum_probs=22.3
Q ss_pred ccCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
-.|+.|++.|....++ ..+.+..|+.|+..+.
T Consensus 19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred EECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 4899999999763222 1234789999987653
No 81
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=80.87 E-value=0.79 Score=39.15 Aligned_cols=32 Identities=16% Similarity=0.557 Sum_probs=21.1
Q ss_pred ccCCCCCceeeeccccc---CC-CcccCCCCCCceee
Q 025946 162 DSCPNCGNDFQIFKSTL---ND-ELQLCPYCSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~L---n~-d~iqCPnCGE~L~V 194 (245)
..|..|++++ ..++.. .. ..-.||.||..+..
T Consensus 122 ~~C~~C~~~~-~~~~~~~~~~~~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 122 YYCVRCEKKY-TVEDVIKKLESSDVPLCDDCNSLIRP 157 (246)
T ss_dssp EEETTTCCEE-EHHHHHHHTTTCSSCBCTTTCCBEEE
T ss_pred eEcCCCCCCC-cHHHHHHHhccCCCCCCCCCCCccCc
Confidence 3899999874 433322 22 35699999976643
No 82
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=80.67 E-value=0.43 Score=35.20 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=14.7
Q ss_pred CCcccCCCCCCceeeeCC
Q 025946 180 DELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~~ 197 (245)
.++..|||||+.|..++.
T Consensus 38 ~g~~~CpYCg~~f~l~~~ 55 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLKGS 55 (67)
T ss_dssp TSEEEETTTTEEEEETTS
T ss_pred CCeEECCCCCCEEEECCC
Confidence 479999999998877653
No 83
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=80.10 E-value=0.9 Score=38.56 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=22.5
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCceeee
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
...|++|+..... +......||+|+...+++
T Consensus 10 ~~~Cw~C~~~~~~----~~~~~~fC~~c~~~q~~~ 40 (207)
T 3bvo_A 10 YPRCWNCGGPWGP----GREDRFFCPQCRALQAPD 40 (207)
T ss_dssp -CBCSSSCCBCCS----SCSCCCBCTTTCCBCCCC
T ss_pred CCCCCCCCCCccc----ccccccccccccccCCCC
Confidence 4589999976322 344789999999877665
No 84
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=80.00 E-value=1.4 Score=34.08 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=24.5
Q ss_pred cCCCCCceeeecccccCC-CcccCCCCCCceeeeCCeeEEecc
Q 025946 163 SCPNCGNDFQIFKSTLND-ELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~-d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
.|+ |+++... |+. ....|++||.. +|+|.+.
T Consensus 50 kC~-C~~Rt~s----l~r~P~~~C~~Cg~~------~wer~~M 81 (92)
T 2kwq_A 50 KCP-CGNRTIS----LDRLPKKHCSTCGLF------KWERVGM 81 (92)
T ss_dssp ECT-TSCEEEE----SSSSCCSCCTTTCSC------CCEEECC
T ss_pred ECC-CCCceeE----eeeCCCCCCCCCCCC------ceEEeec
Confidence 798 9999999 555 35599999987 4888764
No 85
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=79.75 E-value=1.4 Score=32.61 Aligned_cols=35 Identities=11% Similarity=0.402 Sum_probs=23.9
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
+.+..+||.||..-..-.+.+. +...|..|++++.
T Consensus 2 ~~~~~~c~~c~~~n~~p~~~~~-~~~~~~~~~~~~~ 36 (148)
T 3p2a_A 2 NAMNTVCTACMATNRLPEERID-DGAKCGRCGHSLF 36 (148)
T ss_dssp CEEEEECTTTCCEEEEESSCSC-SCCBCTTTCCBTT
T ss_pred CccEEECcccccccCCCCcccc-cCCcchhcCCccc
Confidence 3456789999997655333222 3566999999764
No 86
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=79.70 E-value=0.68 Score=35.32 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=14.0
Q ss_pred CCcccCCCCCCceeeeC
Q 025946 180 DELQLCPYCSQPFSVVD 196 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~ 196 (245)
.++..|||||..|..++
T Consensus 51 ~g~~~CpYCg~~f~l~~ 67 (80)
T 2jvm_A 51 TGFVECGYCDRRYIHES 67 (80)
T ss_dssp TCEEECSSSSCEEEEHH
T ss_pred CCeEECCCCCCEEEecC
Confidence 47999999999887654
No 87
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=79.61 E-value=0.89 Score=30.21 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=21.5
Q ss_pred cCCCCCceeeecccc---c---C---CCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST---L---N---DELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~---L---n---~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ + . ..+..||.|+..+.
T Consensus 17 ~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred ECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 799999999763322 1 1 13689999987653
No 88
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.58 E-value=1.1 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=21.8
Q ss_pred ccCCCCCceeeecccc------cCCCcccCC-CCCCcee
Q 025946 162 DSCPNCGNDFQIFKST------LNDELQLCP-YCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~------Ln~d~iqCP-nCGE~L~ 193 (245)
..|+.||+.|. ..++ -.+-+..|+ .||..+.
T Consensus 11 ~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~ 48 (66)
T 2eod_A 11 QPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTV 48 (66)
T ss_dssp EECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEE
T ss_pred eeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccc
Confidence 37999999997 3322 123478999 9988654
No 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.57 E-value=0.45 Score=32.33 Aligned_cols=11 Identities=55% Similarity=1.210 Sum_probs=5.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 37 ~C~~C~~~f~~ 47 (95)
T 2yt9_A 37 SCPVCGLRFKR 47 (95)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCCCCccCC
Confidence 45555555543
No 90
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=79.49 E-value=0.74 Score=30.37 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=22.0
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ ..+.+..|+.||..+.
T Consensus 19 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred ECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhC
Confidence 899999999763222 1234789999987664
No 91
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.11 E-value=0.45 Score=33.66 Aligned_cols=31 Identities=23% Similarity=0.603 Sum_probs=21.7
Q ss_pred ccCCCCCceee-ecccccC---------CCcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQ-IFKSTLN---------DELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~-~~ed~Ln---------~d~iqCPnCGE~L~ 193 (245)
..|+.||+.|. .. ..|. +.+..|+.||..+.
T Consensus 25 ~~C~~C~k~f~~~~-~~L~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 25 AVCPTCNVVTRKTL-VGLKKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp CCCTTTCCCCSSCS-HHHHHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred cCCCCCCCChhhhH-HHHHHHHHHHcCCCCCEECCCCCCccC
Confidence 38999999998 42 2221 23789999987653
No 92
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=78.83 E-value=1.1 Score=40.02 Aligned_cols=33 Identities=21% Similarity=0.543 Sum_probs=21.6
Q ss_pred ccCCCCCceeeecc---cccCCCcccCCCCCCceee
Q 025946 162 DSCPNCGNDFQIFK---STLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~eF~~~e---d~Ln~d~iqCPnCGE~L~V 194 (245)
..|..|++++...+ ++.....-.||.||..+..
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 175 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKP 175 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEEE
T ss_pred EEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCccCC
Confidence 38999998765421 1123456789999876543
No 93
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=78.81 E-value=1.6 Score=35.29 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=27.6
Q ss_pred cCCCCCceeeeccccc-CCCcccCCCCCCceeeeCCeeE
Q 025946 163 SCPNCGNDFQIFKSTL-NDELQLCPYCSQPFSVVDDKFV 200 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-n~d~iqCPnCGE~L~Vd~~~F~ 200 (245)
-||.||.-++..++-- +.....|++||-..++++.--.
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~~~v~ 64 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVY 64 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSCSEEE
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcEEcCCceEE
Confidence 7999999998844322 2236999999998877765433
No 94
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=78.58 E-value=1.4 Score=39.20 Aligned_cols=32 Identities=25% Similarity=0.551 Sum_probs=19.9
Q ss_pred eccCCCCCceeeeccccc-------CCCcccCCCCCCcee
Q 025946 161 QDSCPNCGNDFQIFKSTL-------NDELQLCPYCSQPFS 193 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~L-------n~d~iqCPnCGE~L~ 193 (245)
...|..|++++...+... ....-.|| ||..+.
T Consensus 154 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~lr 192 (290)
T 3u31_A 154 EAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGIFK 192 (290)
T ss_dssp EEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCBEE
T ss_pred cceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCEEC
Confidence 349999998765432221 12356799 987654
No 95
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=78.47 E-value=0.75 Score=39.75 Aligned_cols=33 Identities=21% Similarity=0.580 Sum_probs=21.6
Q ss_pred cCCCCCceeee--cccccCC-CcccCCCCCCceeee
Q 025946 163 SCPNCGNDFQI--FKSTLND-ELQLCPYCSQPFSVV 195 (245)
Q Consensus 163 tCPnCG~eF~~--~ed~Ln~-d~iqCPnCGE~L~Vd 195 (245)
.||+|+..|-. .+..++. ....||+|+++++.+
T Consensus 195 ~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 195 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 68888877654 2222332 456899999987654
No 96
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=78.37 E-value=1.3 Score=30.63 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=17.5
Q ss_pred cCCCCCceeeeccc-----------ccC--CCcccCCCCCCc
Q 025946 163 SCPNCGNDFQIFKS-----------TLN--DELQLCPYCSQP 191 (245)
Q Consensus 163 tCPnCG~eF~~~ed-----------~Ln--~d~iqCPnCGE~ 191 (245)
.|++||+. |+-+. .++ .+.-.||.||.+
T Consensus 4 ~C~~CGyv-Yd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 4 SCKICGYI-YDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EESSSSCE-EETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred EeCCCCeE-ECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 79999987 44210 011 233489999985
No 97
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=78.11 E-value=0.92 Score=35.11 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=14.4
Q ss_pred CCcccCCCCCCceeeeCC
Q 025946 180 DELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~~ 197 (245)
.++..|||||..+..++.
T Consensus 46 ~g~~~CpYCg~~y~~~~~ 63 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPS 63 (87)
T ss_dssp CCEECCTTTCCEEECCTT
T ss_pred CCeEECCCCCCEeEcCCC
Confidence 479999999998876653
No 98
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.00 E-value=1.3 Score=31.25 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=4.0
Q ss_pred CCCCCcee
Q 025946 164 CPNCGNDF 171 (245)
Q Consensus 164 CPnCG~eF 171 (245)
|+.|++.|
T Consensus 53 C~~C~~~f 60 (115)
T 2dmi_A 53 DNNNPKRW 60 (115)
T ss_dssp CCCCCSCC
T ss_pred CCCCCccc
Confidence 55555444
No 99
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=77.75 E-value=1.2 Score=32.62 Aligned_cols=33 Identities=21% Similarity=0.622 Sum_probs=24.9
Q ss_pred ccCCCCCceeeecc---cccCCCcccCCCCCCceee
Q 025946 162 DSCPNCGNDFQIFK---STLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~eF~~~e---d~Ln~d~iqCPnCGE~L~V 194 (245)
.+||.|.+.+...+ ..++++...||-|-+.+..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 39999999887522 2256789999999988753
No 100
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=77.43 E-value=0.42 Score=34.40 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=10.4
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.-..||.|||.+.
T Consensus 35 p~~~C~~CGE~~~ 47 (78)
T 3ga8_A 35 HGLYCVHCEESIM 47 (78)
T ss_dssp EEEEETTTCCEEC
T ss_pred eeEECCCCCCEEE
Confidence 3678999999874
No 101
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=77.40 E-value=0.75 Score=31.29 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=4.8
Q ss_pred cCCCCCceee
Q 025946 163 SCPNCGNDFQ 172 (245)
Q Consensus 163 tCPnCG~eF~ 172 (245)
.|+.|++.|.
T Consensus 10 ~C~~C~~~f~ 19 (96)
T 2dmd_A 10 KCEVCGKCFS 19 (96)
T ss_dssp CBTTTTBCCC
T ss_pred ECCCCCCccC
Confidence 3555554444
No 102
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=77.38 E-value=1.1 Score=37.56 Aligned_cols=30 Identities=27% Similarity=0.652 Sum_probs=21.3
Q ss_pred ceeccCCCCCce--eeecccccCCCcccCCCCCCce
Q 025946 159 IVQDSCPNCGND--FQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 159 LIE~tCPnCG~e--F~~~ed~Ln~d~iqCPnCGE~L 192 (245)
+....||+||.+ |+.+ .++...|=+||...
T Consensus 12 ~~~~~CP~Cg~~d~~~~~----~dg~~~C~~Cg~~~ 43 (255)
T 1nui_A 12 LYHIPCDNCGSSDGNSLF----SDGHTFCYVCEKWT 43 (255)
T ss_dssp EEEECCSSSCCSSCEEEE----TTSCEEETTTCCEE
T ss_pred ecCCcCCCCCCCCCceEe----CCCCeecccCCCcC
Confidence 345699999874 5542 23569999999753
No 103
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=76.96 E-value=1.7 Score=34.04 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=26.2
Q ss_pred cCCCCCceeeeccccc-CCCcccCCCCCCceeeeCC
Q 025946 163 SCPNCGNDFQIFKSTL-NDELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-n~d~iqCPnCGE~L~Vd~~ 197 (245)
-||.||.-++..++.- +.....|+.||-..++++.
T Consensus 6 FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~~ 41 (122)
T 1twf_I 6 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP 41 (122)
T ss_dssp BCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSCS
T ss_pred cccccCccCcccccCcCCCCEEECCcCCCeeecCcc
Confidence 6999999999754421 2357899999998877643
No 104
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=76.80 E-value=0.82 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.601 Sum_probs=22.3
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.||+.|....++ ..+-+-.|+.||..+.
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 799999999863222 1234889999988764
No 105
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=76.37 E-value=0.69 Score=30.99 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=6.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 36 ~C~~C~~~f~~ 46 (90)
T 1a1h_A 36 QCRICMRNFSR 46 (90)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCcccCC
Confidence 56666665554
No 106
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=76.12 E-value=0.77 Score=33.26 Aligned_cols=31 Identities=29% Similarity=0.708 Sum_probs=22.2
Q ss_pred cCCCCCceeeecccc-----cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-----LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-----Ln~d~iqCPnCGE~L~ 193 (245)
.|+.||+.|....++ ....+-.|+.||..+.
T Consensus 76 ~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 76 VCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111 (129)
T ss_dssp ECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCS
T ss_pred ECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccC
Confidence 799999999763222 1145789999988663
No 107
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=75.65 E-value=1.1 Score=31.48 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=5.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.||.|++.|..
T Consensus 9 ~C~~C~~~f~~ 19 (124)
T 2dlq_A 9 ECPTCHKKFLS 19 (124)
T ss_dssp CCTTTCCCCSS
T ss_pred CCCCCCCcCCC
Confidence 45555555543
No 108
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=75.14 E-value=1.1 Score=39.24 Aligned_cols=27 Identities=26% Similarity=0.813 Sum_probs=20.1
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
.||.||.++.- ..+-..+...||.|-.
T Consensus 237 pC~~CG~~I~~-~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRPVER-RVVAGRGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCBCEE-EESSSCEEEECTTTTT
T ss_pred CCCCCCCEeeE-EEECCCceEECCCCCC
Confidence 79999988765 2334557889999954
No 109
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=74.98 E-value=1.3 Score=35.85 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=23.3
Q ss_pred cCcceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 156 SRDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 156 ~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.-+++-..|+.||+.++- ....||.|+..
T Consensus 42 ~g~L~~~rC~~CG~~~fP-------Pr~~Cp~C~s~ 70 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIFVP-------ARSYCEHCFVK 70 (145)
T ss_dssp TTCCEEEECTTTCCEEES-------CCSEETTTTEE
T ss_pred CCEEEEEEECCCCcEEeC-------CCCCCCCCCCC
Confidence 446677799999988776 57789999875
No 110
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=74.92 E-value=1.3 Score=38.73 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=21.0
Q ss_pred ccCCCCCceeeecccc---cC---C-CcccCCCCCCceeee
Q 025946 162 DSCPNCGNDFQIFKST---LN---D-ELQLCPYCSQPFSVV 195 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~---Ln---~-d~iqCPnCGE~L~Vd 195 (245)
..|..|++++.. ++. +. . ..-.||.||..+..+
T Consensus 137 ~~C~~C~~~~~~-~~~~~~~~~~~~~~~P~C~~Cgg~lrP~ 176 (289)
T 1q1a_A 137 CHCIGCGKVYPP-QVFKSKLAEHPIKDFVKCDVCGELVKPA 176 (289)
T ss_dssp EEETTTCCEECH-HHHHHHHTCSSCCSCCBCTTTCCBEEEE
T ss_pred eEECCCCCCCcH-HHHHHHHhhccCCCCccCCCCCCEECCC
Confidence 379999986543 221 21 1 346999999876543
No 111
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=74.88 E-value=0.83 Score=28.82 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=21.7
Q ss_pred cCCCCCceeeecccc--------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST--------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~--------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ ..+.+..|+.||..+.
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred ECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 799999999663222 1224789999998763
No 112
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=74.75 E-value=1 Score=30.61 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=21.4
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ ..+.+..|+.||..+.
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccC
Confidence 799999998763222 1234789999987653
No 113
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=74.50 E-value=0.91 Score=39.90 Aligned_cols=26 Identities=23% Similarity=0.721 Sum_probs=19.6
Q ss_pred cCCCCCceeeecccccCCCcccCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
.||.||.++.- ..+-..+...||.|-
T Consensus 247 pC~~CG~~I~~-~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEK-TVVAGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEE-EEETTEEEEECTTTC
T ss_pred CCCCCCCeEEE-EEECCCCeEECCCCC
Confidence 89999998765 222345789999994
No 114
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=74.42 E-value=1.8 Score=34.16 Aligned_cols=28 Identities=21% Similarity=0.560 Sum_probs=18.3
Q ss_pred ccCCCCCceeeec-ccccCCCcccCCCCC
Q 025946 162 DSCPNCGNDFQIF-KSTLNDELQLCPYCS 189 (245)
Q Consensus 162 ~tCPnCG~eF~~~-ed~Ln~d~iqCPnCG 189 (245)
.-||.||.+.... .+--....-.|+.||
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred ccCchhCCccccccccCCCCcceECCCCC
Confidence 3699999998761 111112356899999
No 115
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=74.33 E-value=2 Score=44.87 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=22.5
Q ss_pred cCCCCCceeeecccccCC----CcccCCCCCCceeeeCC
Q 025946 163 SCPNCGNDFQIFKSTLND----ELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~----d~iqCPnCGE~L~Vd~~ 197 (245)
.||+|.+.=+..+..... ..-.||+||+++.-|+-
T Consensus 504 ~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~dg~ 542 (1041)
T 3f2b_A 504 VCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGH 542 (1041)
T ss_dssp ECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECC
T ss_pred cCccccccccccccccccccCCccccCccccccccccCC
Confidence 699999844332111111 36789999999876654
No 116
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=74.09 E-value=1.3 Score=30.72 Aligned_cols=30 Identities=23% Similarity=0.593 Sum_probs=15.2
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L 192 (245)
.|+.|++.|.....+ -.+.+..|+.|+..+
T Consensus 19 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 55 (106)
T 2ee8_A 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55 (106)
T ss_dssp BCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBC
T ss_pred ECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchh
Confidence 566666666542211 112356666666554
No 117
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=73.59 E-value=0.82 Score=40.61 Aligned_cols=42 Identities=19% Similarity=0.438 Sum_probs=28.6
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCce----------eeeCCeeEEecc
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF----------SVVDDKFVRESV 204 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L----------~Vd~~~F~R~~~ 204 (245)
...||+|+...|.. .|.+...+||.|+... -+|++.|.--..
T Consensus 30 ~~kc~~~~~~~y~~--~l~~~~~v~p~~~~~~r~~arerI~~L~D~gsF~El~~ 81 (285)
T 2f9i_B 30 MTKCPKCKKIMYTK--ELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDK 81 (285)
T ss_dssp EEECTTTCCEEEHH--HHHHTTTBCTTTCCBCCCCHHHHHHHTSCTTCCEEEST
T ss_pred HHhhHhhCCccchh--hhHHhcCcCCCCCCCCCCCHHHHHHHHccCCCcEEECC
Confidence 45899999999982 1334578999998833 245666655443
No 118
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=73.50 E-value=1 Score=39.47 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=19.2
Q ss_pred cCCCCCceeeecccccCCCcccCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
.||.||.++.- ..+-..+...||.|-
T Consensus 242 pC~~CG~~I~~-~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTPIVA-TKHAQRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCBCEE-EEETTEEEEECTTTC
T ss_pred CCCCCCCEeeE-EEECCCceEECCCCC
Confidence 79999988765 222345788999994
No 119
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=73.41 E-value=1 Score=39.43 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=20.0
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
.||.||.++.- ..+-..+...||.|-.
T Consensus 244 pC~~CG~~I~~-~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQK-IKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEE-EEETTEEEEECTTTSC
T ss_pred CCCCCCCEeeE-EEECCCceEECCCCCC
Confidence 79999998775 2223457889999954
No 120
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.34 E-value=1.3 Score=30.10 Aligned_cols=40 Identities=15% Similarity=0.432 Sum_probs=24.9
Q ss_pred HhcCcceeccCCCCCceeeecccc-----c-CC--Cc--------ccCCCCCCcee
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKST-----L-ND--EL--------QLCPYCSQPFS 193 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~-----L-n~--d~--------iqCPnCGE~L~ 193 (245)
|...+-+...|+.|++.|....++ . .. .+ ..|+.||..+.
T Consensus 18 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~ 73 (95)
T 2ej4_A 18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73 (95)
T ss_dssp CCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCS
T ss_pred eecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccC
Confidence 333444556799999999753222 1 11 13 68999988664
No 121
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=73.12 E-value=1 Score=39.17 Aligned_cols=26 Identities=23% Similarity=0.669 Sum_probs=19.6
Q ss_pred cCCCCCceeeecccccCCCcccCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
.||.||.++.- ..+-..+...||.|-
T Consensus 236 pC~~CG~~I~~-~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEK-TTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEE-EEETTEEEEECTTTC
T ss_pred CCCCCCCEeEE-EEECCCCeEECCCCC
Confidence 79999998765 223355789999994
No 122
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=73.10 E-value=4.6 Score=34.51 Aligned_cols=72 Identities=15% Similarity=0.414 Sum_probs=37.9
Q ss_pred cC--CCCCceeeec---ccc-cCCCcccCCCCCC--ceeeeCCeeEEecccccc-ccccccccccccCCCCCCCCCCCce
Q 025946 163 SC--PNCGNDFQIF---KST-LNDELQLCPYCSQ--PFSVVDDKFVRESVRFSN-ESTTFGQAFSDFFPGSRKGRESSTS 233 (245)
Q Consensus 163 tC--PnCG~eF~~~---ed~-Ln~d~iqCPnCGE--~L~Vd~~~F~R~~~~f~~-~~~~~~~af~~~~~~~~~~~~~~~~ 233 (245)
.| +.||.+++.. .+. --..|..||.|+. ++.++ .+...|.+ |.-.-++.-++. ..|.-|-..
T Consensus 143 ~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~-----~~~s~f~D~Q~ikiQE~pe~v----p~G~~Prsi 213 (268)
T 2vl6_A 143 KHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLI-----PEKTKLIDWQKAVIQERPEEV----PSGQLPRQL 213 (268)
T ss_dssp EEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCBCEEEEC-----GGGCEEEEEEEEEEECCGGGS----CTTSCCCEE
T ss_pred ECCCCCCCCEEeeeecccCCCcccCCccCCCCCCCCCEEEe-----cCccEEEeeEEEEEEeCCCCC----CCCCCCcEE
Confidence 89 9999988763 111 1124789999997 23332 23456666 444444433321 234444433
Q ss_pred eEEeeeeeec
Q 025946 234 VVDVEAEIKD 243 (245)
Q Consensus 234 vvdveaev~d 243 (245)
-|-++.+..|
T Consensus 214 ~v~l~~dLvd 223 (268)
T 2vl6_A 214 EIILEDDLVD 223 (268)
T ss_dssp EEEEEGGGTT
T ss_pred EEEEccCccC
Confidence 3444444433
No 123
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=73.02 E-value=1.3 Score=35.72 Aligned_cols=28 Identities=36% Similarity=0.825 Sum_probs=18.9
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||.||+.-.-= ..-+--+|+.||..+
T Consensus 61 ytCPfCGk~~vKR---~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 61 HACPNCGEDRVDR---QGTGIWQCSYCDYKF 88 (116)
T ss_dssp EECSSSCCEEEEE---EETTEEEETTTCCEE
T ss_pred CcCCCCCCceeEe---cCceeEECCCCCCEE
Confidence 3999999843321 122567899998876
No 124
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.86 E-value=0.63 Score=32.34 Aligned_cols=30 Identities=23% Similarity=0.612 Sum_probs=21.3
Q ss_pred ccCCCCCceeeecccccC-------CCcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQIFKSTLN-------DELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln-------~d~iqCPnCGE~L~ 193 (245)
..|+.|++.|.. ..|+ .-+..||+||+.+.
T Consensus 18 ~~C~~C~~~~~~--~~L~~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 18 AVCQHCDLELSI--LKLKEHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp EECSSSCCEECH--HHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred cCCcccChHhhH--HHHHHHHhHcCCCceEcccCCCcCc
Confidence 479999999964 2232 23789999988654
No 125
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=72.71 E-value=1.3 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=19.8
Q ss_pred ccCCCCCceeeecccc-------cCCCcccCCCCCC
Q 025946 162 DSCPNCGNDFQIFKST-------LNDELQLCPYCSQ 190 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE 190 (245)
-.|+.|++.|.....+ ..+-+..|+.||.
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp EEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred eeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 3799999998763322 1224788999984
No 126
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=72.67 E-value=2 Score=30.22 Aligned_cols=29 Identities=21% Similarity=0.598 Sum_probs=17.5
Q ss_pred cCCCCCceeeecccc----------cC--CCcccCCCCCCc
Q 025946 163 SCPNCGNDFQIFKST----------LN--DELQLCPYCSQP 191 (245)
Q Consensus 163 tCPnCG~eF~~~ed~----------Ln--~d~iqCPnCGE~ 191 (245)
.|++||+.+--.+.. +. .+.-+||.||..
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 799999765421100 01 123489999985
No 127
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=72.54 E-value=0.72 Score=37.42 Aligned_cols=18 Identities=11% Similarity=0.405 Sum_probs=11.6
Q ss_pred CCcccCCCCCCceeeeCC
Q 025946 180 DELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~~ 197 (245)
++..+||+||-.|++.+|
T Consensus 97 EG~L~Cp~cgr~ypI~~G 114 (125)
T 3q87_A 97 EGSLRCDMCGLIYPIKGS 114 (125)
T ss_dssp EEEEEETTTCCEEEEETT
T ss_pred EEEEECCCCCCEeeccCC
Confidence 356667777776666665
No 128
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=72.31 E-value=1.5 Score=30.66 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=19.6
Q ss_pred ccCCCCCceeeecccc-------cCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKST-------LNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~-------Ln~d~iqCPnCGE~L 192 (245)
..||.|++.|....++ -.+.+..|+.|+..+
T Consensus 38 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 75 (110)
T 2csh_A 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75 (110)
T ss_dssp EECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEE
T ss_pred ccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchh
Confidence 3788888888763222 112367888887655
No 129
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=72.13 E-value=1.4 Score=36.23 Aligned_cols=31 Identities=23% Similarity=0.626 Sum_probs=23.4
Q ss_pred cceeccCCC--CCceeeecccccCCCcccCCCCCCce
Q 025946 158 DIVQDSCPN--CGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 158 nLIE~tCPn--CG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
+.+-..||+ |.++... ..++.-.|+.|++..
T Consensus 40 ~~~Y~aC~~~~CnKKv~~----~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 40 NCMYQACPTQDCNKKVID----QQNGLYRCEKCDTEF 72 (181)
T ss_dssp TTEEEBCCSTTCCCBCEE----ETTTEEEETTTTEEE
T ss_pred CEEECCCCchhcCCcccc----CCCCeEECCCCCCcC
Confidence 455669999 9999875 234567999998764
No 130
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=71.47 E-value=1.6 Score=26.75 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=15.7
Q ss_pred eeccCCCCCceeeecccccCCC
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDE 181 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d 181 (245)
+...||.|+++.|..|.+..++
T Consensus 2 m~~~C~~C~k~Vy~~Ek~~~~g 23 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTEKVNCLD 23 (31)
T ss_dssp CCCBCSSSCSBCCGGGCCCSSS
T ss_pred CCCcCCccCCEEecceeEEECC
Confidence 3458999999999865554444
No 131
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=71.33 E-value=1.2 Score=34.78 Aligned_cols=11 Identities=45% Similarity=1.195 Sum_probs=10.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.||+||.+||+
T Consensus 53 kCP~CgEEFyG 63 (95)
T 2k5c_A 53 KCPVCGEEFYG 63 (95)
T ss_dssp ECTTTCCEEET
T ss_pred cCCCccHHHhc
Confidence 79999999998
No 132
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.51 E-value=0.8 Score=30.39 Aligned_cols=31 Identities=23% Similarity=0.685 Sum_probs=20.4
Q ss_pred cCCCCCceeeecccc------cCC-----CcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST------LND-----ELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~------Ln~-----d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....++ ... .+..|+.|+..+.
T Consensus 17 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~ 58 (86)
T 1x6h_A 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58 (86)
T ss_dssp ECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEES
T ss_pred cCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhC
Confidence 799999998753221 111 3578999977653
No 133
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=70.40 E-value=1.6 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=21.4
Q ss_pred cCC--CCCceeeecccc-------cCCCcccCCCCCCcee
Q 025946 163 SCP--NCGNDFQIFKST-------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCP--nCG~eF~~~ed~-------Ln~d~iqCPnCGE~L~ 193 (245)
.|| .|++.|....+. ..+.+..|+.||..+.
T Consensus 21 ~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 21 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60 (73)
T ss_dssp ECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhC
Confidence 798 699998763222 1235789999988664
No 134
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=70.15 E-value=0.93 Score=44.37 Aligned_cols=33 Identities=21% Similarity=0.606 Sum_probs=5.2
Q ss_pred cCcceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 156 SRDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 156 ~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.=|.--+.||+||+.--. .+.+..-.||.||..
T Consensus 535 ~~n~~~~~C~~CGy~~~~---~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 535 GVNMPVDKCFTCGSTHEM---TPTENGFVCSICGET 567 (605)
T ss_dssp EEECCEEET---------------------------
T ss_pred EeCCCCccCcccCCcCcc---CccccCCcCCCCCCC
Confidence 334444599999975321 011123679999974
No 135
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=69.39 E-value=2.9 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.5
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.||.|+..-+. ....|-.||++-
T Consensus 7 ~C~~C~~~Nfa-------~r~~C~~C~~pr 29 (32)
T 2lk0_A 7 LCNKCCLNNFR-------KRLKCFRCGADK 29 (32)
T ss_dssp ECTTTCCEEET-------TCCBCTTTCCBT
T ss_pred CcCcCcCCcCh-------hcceecCCCCcC
Confidence 79999988777 678999999864
No 136
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=69.28 E-value=2.9 Score=30.94 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=33.7
Q ss_pred ceeccCCCCCceeeeccc-ccCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 159 IVQDSCPNCGNDFQIFKS-TLNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed-~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
-++..||.-|..+.. . .++++.++||+-|..|..++|+-...+.
T Consensus 41 A~~n~CpH~g~~L~~--g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~P~ 85 (112)
T 1fqt_A 41 ATQDRCTHGDWSLSD--GGYLEGDVVECSLHMGKFCVRTGKVKSPPP 85 (112)
T ss_dssp EEESBCTTSSCBSST--TCCEETTEEECTTTCCEEETTTCCEEESSC
T ss_pred EEECCCCCCCcCCCC--CCEEcCCEEECCCCCCEEeCCCCcEeCCCC
Confidence 355699999988652 2 3456789999999999998888766554
No 137
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=69.25 E-value=1.7 Score=40.70 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=9.4
Q ss_pred CcceeccCCCCCce
Q 025946 157 RDIVQDSCPNCGND 170 (245)
Q Consensus 157 rnLIE~tCPnCG~e 170 (245)
...++.+||.||++
T Consensus 151 ~~~v~g~cp~c~~~ 164 (560)
T 3h99_A 151 DRFVKGTCPKCKSP 164 (560)
T ss_dssp GGGEEEECTTTCCS
T ss_pred chhcCCCCCCCCCc
Confidence 34556788888854
No 138
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=69.14 E-value=2.7 Score=36.47 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=21.4
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
-..-||.||.+.... -+.-..+||.||..
T Consensus 106 ~~~fC~~CG~~~~~~---~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPS---KTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEEC---SSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccC---CCceeeeCCCCCCE
Confidence 356899999988652 12347899999984
No 139
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=68.48 E-value=3.2 Score=30.07 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=33.0
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
++..||.-|..+.. ..+.++.++||+-|..|.+++|+-...++
T Consensus 40 ~~~~CpH~g~~L~~--g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P~ 82 (103)
T 2qpz_A 40 TDNLCTHGSARMSD--GYLEGREIECPLHQGRFDVCTGKALCAPV 82 (103)
T ss_dssp EESBCSSSSCBGGG--SEEETTEEECTTTTCEEETTTCCEEETTC
T ss_pred ECCcCCCCCCCCCC--CeEeCCEEECCCCCCEEeCCCCCEeCCCC
Confidence 56699999988643 33456789999999999998887665543
No 140
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=68.30 E-value=2.6 Score=30.79 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=33.9
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
++..||.-|.++.. ..++++.++||+-|..|.+++|+-...++
T Consensus 38 ~~~~CpH~g~~L~~--g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P~ 80 (106)
T 3dqy_A 38 VQDTCTHGDWALSD--GYLDGDIVECTLHFGKFCVRTGKVKALPA 80 (106)
T ss_dssp EESBCSSSSCBGGG--SEEETTEEECTTTCCEEETTTCCEEETTC
T ss_pred EeCcCCCCCCCCcC--cEEeCCEEECCCCCCEEeCCCCCEeCCCC
Confidence 56699999988653 23456789999999999998888776654
No 141
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.97 E-value=2.2 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=15.7
Q ss_pred cCCCCCceeeeccccc-------CCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKSTL-------NDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-------n~d~iqCPnC 188 (245)
.|+.||+.|....++. .+.+..|+.|
T Consensus 14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2epw_A 14 KCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG 46 (46)
T ss_dssp ECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred eCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 6888888887632221 1235677766
No 142
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.91 E-value=2.4 Score=29.66 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=19.4
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.-+||.||...-. +-..|..||..
T Consensus 14 k~iCpkC~a~~~~-------gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNPW-------GAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEECT-------TCSSCSSSSSC
T ss_pred CccCCCCCCcCCC-------CceecCCCCCc
Confidence 3489999988443 78999999986
No 143
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=67.69 E-value=0.76 Score=34.05 Aligned_cols=33 Identities=27% Similarity=0.595 Sum_probs=18.7
Q ss_pred ccCCCCCceeeecc---------cccCCCcccCCC--CCCceee
Q 025946 162 DSCPNCGNDFQIFK---------STLNDELQLCPY--CSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~eF~~~e---------d~Ln~d~iqCPn--CGE~L~V 194 (245)
.+||.|..++...+ ..+++-.+.||| |++.+..
T Consensus 59 ~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 59 SYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp SBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEH
T ss_pred CcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhH
Confidence 47888877766421 112223567776 7666543
No 144
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=67.07 E-value=2.3 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.718 Sum_probs=18.9
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
-++.+||.|+=+-.. ..-.||.|.-.
T Consensus 7 q~~~~C~~C~GsG~~-------i~~~C~~C~G~ 32 (53)
T 3lcz_A 7 DLETTCPNCNGSGRE-------EPEPCPKCLGK 32 (53)
T ss_dssp HHEEECTTTTTSCEE-------TTEECTTTTTS
T ss_pred ceeccCcCCcccccC-------CCCcCCCCCCc
Confidence 367899999766655 23689999643
No 145
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=67.05 E-value=1.9 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=20.2
Q ss_pred eeccCCCCCceeeecc---cc--cCC---CcccCCCCCCce
Q 025946 160 VQDSCPNCGNDFQIFK---ST--LND---ELQLCPYCSQPF 192 (245)
Q Consensus 160 IE~tCPnCG~eF~~~e---d~--Ln~---d~iqCPnCGE~L 192 (245)
+++.||+||+....-- +. +.+ -...||+||-.-
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 4559999998765410 00 111 256899999744
No 146
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.37 E-value=2.6 Score=25.00 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=15.1
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eme_A 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp ECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred ECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 688888887652221 12235667766
No 147
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=65.18 E-value=0.77 Score=34.07 Aligned_cols=40 Identities=15% Similarity=0.421 Sum_probs=25.6
Q ss_pred HhcCcceeccCCCCCceeeeccccc------CCC--c--------ccCCCCCCcee
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKSTL------NDE--L--------QLCPYCSQPFS 193 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~L------n~d--~--------iqCPnCGE~L~ 193 (245)
|+..+-....|+.|++.|....++. ..+ + ..|+.|+..+.
T Consensus 18 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~ 73 (155)
T 2rpc_A 18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73 (155)
T ss_dssp BCCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCS
T ss_pred eechhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccC
Confidence 4444555668999999998633221 111 1 57999998764
No 148
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=65.10 E-value=2.3 Score=32.66 Aligned_cols=11 Identities=45% Similarity=1.386 Sum_probs=6.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.||.|++.|..
T Consensus 107 ~C~~C~~~f~~ 117 (190)
T 2i13_A 107 ACPECGKSFSQ 117 (190)
T ss_dssp ECTTTCCEESS
T ss_pred cCCCCCCccCC
Confidence 45666655544
No 149
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=64.16 E-value=4.2 Score=30.17 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.3
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
..++..|..|+.++.... +-=-..||.||.-
T Consensus 34 ~~v~I~CnDC~~~s~v~~---h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 34 MTVDILCNDCNGRSTVQF---HILGMKCKICESY 64 (79)
T ss_dssp CEEEEEESSSCCEEEEEC---CTTCCCCTTTSCC
T ss_pred CEeEEECCCCCCCccCCc---eeecccCcCCCCc
Confidence 346679999999998721 1112379999873
No 150
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=63.94 E-value=3.9 Score=33.05 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcceec
Q 025946 130 LDAIVSIWLLAVIVPIVGFGAFLWWASRDIVQD 162 (245)
Q Consensus 130 vd~~~~L~LlllllPIl~~~Gf~WWl~rnLIE~ 162 (245)
.+.+..=+++++++-++++++++||++|++...
T Consensus 56 ~~~V~~~liil~~v~lv~LgvvG~~lGR~t~~p 88 (122)
T 2f93_B 56 QEAAVSAILGLIILLGINLGLVAATLGGDTAAS 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344433444455555667788999999987654
No 151
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=63.77 E-value=2.3 Score=38.99 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=20.1
Q ss_pred ccCCCCCceeeecccc---cCC----CcccCCCCCCceee
Q 025946 162 DSCPNCGNDFQIFKST---LND----ELQLCPYCSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~---Ln~----d~iqCPnCGE~L~V 194 (245)
..|..|++++.. ++. +.. ..-.||.||..+..
T Consensus 145 ~~C~~C~~~~~~-~~~~~~~~~~~~~~~P~Cp~Cgg~lrP 183 (361)
T 1q14_A 145 CHCIGCGKVYPP-QVFKSKLAEHPIKDFVKCDVCGELVKP 183 (361)
T ss_dssp EEETTTCCEECT-HHHHHHTTSSSCSCCCBCTTTCCBEEE
T ss_pred cCcCCCCccCcH-HHHHHHHhhcccCCCCCCcCCCCEeCC
Confidence 389999976543 221 221 13689999987643
No 152
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=63.22 E-value=1.2 Score=31.27 Aligned_cols=30 Identities=27% Similarity=0.695 Sum_probs=17.6
Q ss_pred cCCCCCceeeecccccC------CCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTLN------DELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln------~d~iqCPnCGE~L~ 193 (245)
.|+.|++.|....+ |. ..+..|+.|+..+.
T Consensus 18 ~C~~C~~~f~~~~~-l~~H~~~H~~~~~C~~C~~~f~ 53 (107)
T 1wjp_A 18 QCRLCNAKLSSLLE-QGSHERLCRNAAVCPYCSLRFF 53 (107)
T ss_dssp BCTTTCCBCSSHHH-HHHHHHHHHHSBCCTTTCCCBS
T ss_pred ECCCCCCccCCHHH-HHHHHHHCCCCccCCCCCCccC
Confidence 67777777765221 21 13567777776653
No 153
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=63.21 E-value=3.4 Score=30.04 Aligned_cols=33 Identities=27% Similarity=0.771 Sum_probs=21.6
Q ss_pred HhcCcceeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
|+..+-. ..|+.|+.+|.. -.-.-.|.+||+.+
T Consensus 13 W~~d~~~-~~C~~C~~~Fs~-----~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 13 WLKDDEA-THCRQCEKEFSI-----SRRKHHCRNCGHIF 45 (82)
T ss_dssp --CCCCC-CBCTTTCCBCBT-----TBCCEECTTTCCEE
T ss_pred cccCccC-CcccCcCCcccC-----ccccccCCCCCCEE
Confidence 6655433 379999999875 33456788887754
No 154
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.11 E-value=3 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=15.3
Q ss_pred cCCCCCceeeeccccc-------CCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKSTL-------NDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-------n~d~iqCPnC 188 (245)
.|+.||+.|....++. .+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytg_A 14 KCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp ECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 6888888887632221 1235667766
No 155
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=63.00 E-value=2.9 Score=35.37 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=18.7
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
..|++ |...+- ....+.+||+||..
T Consensus 170 A~c~~-g~~m~~----~~~~~m~cp~cg~~ 194 (209)
T 2nn6_I 170 AHSES-GIQMVP----ISWCEMQCPKTHTK 194 (209)
T ss_dssp CBCSS-SCBCEE----EETTEEECTTTTCC
T ss_pred EEcCC-CCEEEE----ccCCEEECCCCCCE
Confidence 48999 766655 44478999999974
No 156
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=62.98 E-value=2.6 Score=42.53 Aligned_cols=59 Identities=22% Similarity=0.594 Sum_probs=34.9
Q ss_pred HhcCcceeccCCCCCceeeecccccCCCcccC--CCCCCceeeeCCeeEEecccccccccccc--ccccccCCC
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKSTLNDELQLC--PYCSQPFSVVDDKFVRESVRFSNESTTFG--QAFSDFFPG 223 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqC--PnCGE~L~Vd~~~F~R~~~~f~~~~~~~~--~af~~~~~~ 223 (245)
+-...+...+||.||..|-. +..+...| |.|++ ++ |.-.+ .++.+-+..+ +.|-+||.+
T Consensus 10 f~~~g~~r~~c~~c~~~fwt----~~~~r~~cgd~~c~~-y~-----fi~~~-~~~~~~~~~eiR~~fl~fF~~ 72 (752)
T 2zze_A 10 FEEEGWIRXXCXVCGXPFWT----LDPDRETCGDPPCDE-YQ-----FIGKP-GIPRXYTLDEMREXFLRFFEX 72 (752)
T ss_dssp HHHTTCEEEECTTTCCEEEE----SCTTCCSCSSTTTSC-CC-----CTTSC-SSSSCCCHHHHHHHHHHHHHT
T ss_pred HHhCCceEeeecccCcceee----cCCCcCCCCCCCCCC-cc-----ccCCC-cccccCCHHHHHHHHHHHHhc
Confidence 44556677799999999998 55555555 35633 32 22222 2333333333 778888753
No 157
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=62.85 E-value=2.7 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=14.9
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emk_A 14 ECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp BCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 688888777662222 12235667666
No 158
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=62.83 E-value=2.8 Score=24.86 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=8.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em9_A 14 NCKECGKSFRW 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCccccccCC
Confidence 68888888765
No 159
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.72 E-value=3.3 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=22.8
Q ss_pred cCCCCCceeee--cccccCC-CcccCCCCCCceeeeCC
Q 025946 163 SCPNCGNDFQI--FKSTLND-ELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 163 tCPnCG~eF~~--~ed~Ln~-d~iqCPnCGE~L~Vd~~ 197 (245)
.|+.|+..|=. .+.-|+. ...+||.|.++++.+..
T Consensus 30 ~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 30 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 68888887754 2223333 23789999988876554
No 160
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=62.64 E-value=6.4 Score=37.49 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=20.3
Q ss_pred cCCC--CCceeeeccc-c---cCCCcccCCCCCC
Q 025946 163 SCPN--CGNDFQIFKS-T---LNDELQLCPYCSQ 190 (245)
Q Consensus 163 tCPn--CG~eF~~~ed-~---Ln~d~iqCPnCGE 190 (245)
.|+. ||.+++..++ . --..|..||+|+.
T Consensus 137 ~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~ 170 (595)
T 3f9v_A 137 KHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 170 (595)
T ss_dssp EEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCC
T ss_pred EecCCCCCCEEEEEeccccCCcccCCCcCCCCCC
Confidence 7999 9998886421 1 1225889999997
No 161
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=62.62 E-value=2.3 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=18.4
Q ss_pred CCceeee--cccccCCCcccCCCCCCceeee
Q 025946 167 CGNDFQI--FKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 167 CG~eF~~--~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
||..|.. .+..+..+...||.|++++..+
T Consensus 26 CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 26 TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 5555543 3334555578899999988643
No 162
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=62.48 E-value=2.6 Score=29.19 Aligned_cols=26 Identities=38% Similarity=0.772 Sum_probs=19.4
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCC
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
+..+.+||.|+=+=.. ....||.|.-
T Consensus 6 ~~~~~~C~~C~GsG~~-------~~~~C~~C~G 31 (53)
T 2bx9_A 6 DDLEVACPKCERAGEI-------EGTPCPACSG 31 (53)
T ss_dssp HHHEEECTTTTTSSEE-------TTEECTTTTT
T ss_pred CCccccCCCCcceecc-------CCCCCccCCC
Confidence 3467799999877666 2468999964
No 163
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.44 E-value=2.5 Score=25.05 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytr_A 14 KCNECGKAFSQ 24 (46)
T ss_dssp CCTTTCCCCSS
T ss_pred CCCCCCCccCC
Confidence 68888877765
No 164
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=62.27 E-value=2.3 Score=32.49 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=5.9
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 52 ~C~~C~k~F~~ 62 (133)
T 2lt7_A 52 PCRYCEKVFPL 62 (133)
T ss_dssp ECSSSSCEESS
T ss_pred eCCccCeeccc
Confidence 45555555544
No 165
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.91 E-value=2.6 Score=24.98 Aligned_cols=11 Identities=36% Similarity=1.189 Sum_probs=8.2
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eop_A 14 ECRECGKSFSF 24 (46)
T ss_dssp BCTTTCCBCSS
T ss_pred eCCCCCchhCC
Confidence 68888877765
No 166
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=61.84 E-value=3.5 Score=24.62 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=8.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ely_A 14 KCVECGKGFSR 24 (46)
T ss_dssp CCSSSCCCBSS
T ss_pred ccCccCcccCC
Confidence 67777777765
No 167
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=61.72 E-value=2.3 Score=39.92 Aligned_cols=37 Identities=5% Similarity=-0.036 Sum_probs=2.7
Q ss_pred ccCCCCCceeeecccc--cC---CCcccCCCCCCceeeeCCe
Q 025946 162 DSCPNCGNDFQIFKST--LN---DELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~--Ln---~d~iqCPnCGE~L~Vd~~~ 198 (245)
..||+|+......... .+ .....||.||+++++.+.+
T Consensus 338 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~ 379 (441)
T 3e20_C 338 FKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSM 379 (441)
T ss_dssp ---------CCEECSCTTTCCC-----------------CCE
T ss_pred EECCCCceEEEecCccccccccccccccCcccCccceecchh
Confidence 3799997443221000 11 2345899999998755443
No 168
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=61.68 E-value=3.3 Score=37.36 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=9.8
Q ss_pred eccCCCCCceeee
Q 025946 161 QDSCPNCGNDFQI 173 (245)
Q Consensus 161 E~tCPnCG~eF~~ 173 (245)
...||+||..=..
T Consensus 182 ~~~CPvCGs~P~~ 194 (309)
T 2fiy_A 182 RTLCPACGSPPMA 194 (309)
T ss_dssp CSSCTTTCCCEEE
T ss_pred CCCCCCCCCcCce
Confidence 4599999976544
No 169
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.68 E-value=3 Score=24.83 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eml_A 14 ECSVCGKAFSH 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCcCCccCC
Confidence 68888887776
No 170
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.67 E-value=3.3 Score=24.62 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2epz_A 14 DCIDCGKAFSD 24 (46)
T ss_dssp CCTTTCCCBSS
T ss_pred ECCCCCceeCC
Confidence 68888888775
No 171
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.65 E-value=3.4 Score=24.54 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=15.2
Q ss_pred cCCCCCceeeeccccc-------CCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKSTL-------NDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-------n~d~iqCPnC 188 (245)
.|+.||+.|....++. .+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2yu8_A 14 KCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46 (46)
T ss_dssp ECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred ECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 6888888877632221 1235667666
No 172
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.56 E-value=3 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=15.1
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emm_A 14 KCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred eCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 688888877662221 12235667766
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=61.53 E-value=1.6 Score=35.72 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=9.5
Q ss_pred cccCCCCCCceee
Q 025946 182 LQLCPYCSQPFSV 194 (245)
Q Consensus 182 ~iqCPnCGE~L~V 194 (245)
...||.|+++++.
T Consensus 243 ~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 243 GHFNPVTRSPLTQ 255 (281)
T ss_dssp CSSCTTTCCCCCG
T ss_pred CCCCcCCCCCCch
Confidence 3449999988864
No 174
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.33 E-value=2.4 Score=27.78 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=4.4
Q ss_pred CCCCCceee
Q 025946 164 CPNCGNDFQ 172 (245)
Q Consensus 164 CPnCG~eF~ 172 (245)
||.|++.|.
T Consensus 12 ~~~C~~~f~ 20 (79)
T 2dlk_A 12 FPGCGRIFS 20 (79)
T ss_dssp STTTCCEES
T ss_pred CCCCcCccC
Confidence 334555554
No 175
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=61.33 E-value=5.3 Score=30.23 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=34.2
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
++..||.-|..+..-+..+.++.++||+-|..|.+++|+-...++
T Consensus 47 ~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~ 91 (121)
T 3gce_A 47 ISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPC 91 (121)
T ss_dssp EESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEETTC
T ss_pred EeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeCCCC
Confidence 667999999887531003567789999999999998888776554
No 176
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.29 E-value=3 Score=24.73 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=8.0
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eov_A 14 KCSDCGKSFTW 24 (46)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCccChhhCC
Confidence 67777777765
No 177
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=61.21 E-value=3.5 Score=30.24 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=31.3
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
++..||.-|..+.. ..+.++.++||+-|..|.+++|+-...+
T Consensus 41 ~~~~CpH~g~~L~~--g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~P 82 (108)
T 2i7f_A 41 TDNLCTHGNAMLTD--GYQDGTIIECPFHGGSFDIATGAAKAFP 82 (108)
T ss_dssp EESBCSSSSCBGGG--SEEETTEEECSSTTCEEETTTCCBCSTT
T ss_pred EeCcCCCCCCCCCC--CEEeCCEEEcCCCCCEEeCCCcCEeCCC
Confidence 45699999987653 3345678999999999998777755443
No 178
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=61.08 E-value=2.9 Score=39.39 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=19.4
Q ss_pred ceeccCCCCCceeeec---ccc--cCC---CcccCCCCCCce
Q 025946 159 IVQDSCPNCGNDFQIF---KST--LND---ELQLCPYCSQPF 192 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~---ed~--Ln~---d~iqCPnCGE~L 192 (245)
-+++.||+||+.-..- -+. +.+ ....||+||-.-
T Consensus 10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 4678999999643320 000 111 256899999643
No 179
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=60.89 E-value=3.8 Score=28.78 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=11.7
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCC
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
..||+||..-. ..-.||+ |
T Consensus 28 ~~c~~cGe~~l--------~H~vc~~-G 46 (56)
T 3r8s_0 28 SVDKTSGEKHL--------RHHITAD-G 46 (56)
T ss_dssp EECTTTCCEEE--------TTBCCTT-S
T ss_pred eECCCCCCeec--------ccEECCC-C
Confidence 37777774322 4677777 5
No 180
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.88 E-value=8.3 Score=26.92 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=29.5
Q ss_pred eeccCCCCCceeeecccccC------CCcccCCCCCCceeeeCCeeEEecccc
Q 025946 160 VQDSCPNCGNDFQIFKSTLN------DELQLCPYCSQPFSVVDDKFVRESVRF 206 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln------~d~iqCPnCGE~L~Vd~~~F~R~~~~f 206 (245)
....|+.|++.+++ +.+.. .+-..|..|+++|. ++.|.+++.-|
T Consensus 14 ~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~g~~y 63 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPLIFKNDPYHPDHFNCANCGKELT--ADARELKGELY 63 (79)
T ss_dssp CCCBCTTTCCBCCS-CCCCCSSSCCCTTTSBCSSSCCBCC--TTCEEETTEEE
T ss_pred CCCCCccCCCEecc-eEEEECcceeCCCCCEeCCCCCccC--CCCEeECCEEe
Confidence 34589999999884 33211 12468999999987 33577766544
No 181
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=60.75 E-value=1.4 Score=37.23 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.9
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCC
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
.|+.||..+...+..+.++...|+.|-+
T Consensus 174 ~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 174 RCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp ECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred ECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 6888887777766666777888887743
No 182
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=60.66 E-value=3.3 Score=29.49 Aligned_cols=26 Identities=31% Similarity=0.819 Sum_probs=19.6
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
..|+.|+.+|.. + .-.-.|.+||+.+
T Consensus 12 ~~C~~C~~~F~~----~-~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSL----L-NRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBT----T-BCCEECTTTCCEE
T ss_pred CcccCCCCccCC----c-cccccCCCCCEEE
Confidence 489999999886 3 3467788887754
No 183
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.48 E-value=3.4 Score=24.55 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=15.1
Q ss_pred cCCCCCceeeeccccc-------CCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKSTL-------NDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-------n~d~iqCPnC 188 (245)
.|+.||+.|....++. .+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2emp_A 14 MCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46 (46)
T ss_dssp ECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 6888888776632221 2235667666
No 184
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=60.20 E-value=3.3 Score=24.53 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=8.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2el4_A 14 GCSQCAKTFSL 24 (46)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCchhCC
Confidence 68888888776
No 185
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.97 E-value=3.8 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=15.1
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2yso_A 14 QCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46 (46)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred EccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 688888887752221 12235667666
No 186
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.95 E-value=2.7 Score=31.37 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=9.5
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
+.-.||.||+++.
T Consensus 46 ~g~~CPvCgs~l~ 58 (112)
T 1l8d_A 46 AKGKCPVCGRELT 58 (112)
T ss_dssp CSEECTTTCCEEC
T ss_pred CCCCCCCCCCcCC
Confidence 3556888888876
No 187
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.76 E-value=2.3 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=17.6
Q ss_pred CCCceeee--cccccCCCcccCCCCCCceee
Q 025946 166 NCGNDFQI--FKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 166 nCG~eF~~--~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.||..|.. .+..+.+.+..||.|.+++..
T Consensus 25 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 25 VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 35555543 233334456789999988754
No 188
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.69 E-value=3.3 Score=24.71 Aligned_cols=11 Identities=36% Similarity=1.204 Sum_probs=8.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em5_A 14 QCHECGRGFTL 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCCccCC
Confidence 68888888766
No 189
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.35 E-value=3.3 Score=24.69 Aligned_cols=11 Identities=27% Similarity=1.081 Sum_probs=8.0
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2elz_A 14 KCEDCGKGYNR 24 (46)
T ss_dssp BCSSSCCBCSS
T ss_pred eCcccCchhCC
Confidence 67777777765
No 190
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.30 E-value=3.4 Score=24.58 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emh_A 14 ICTVCGKAFTD 24 (46)
T ss_dssp ECTTTCCEESS
T ss_pred CCCCCCchhCC
Confidence 68888877776
No 191
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.29 E-value=3.6 Score=24.44 Aligned_cols=11 Identities=36% Similarity=1.060 Sum_probs=8.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em7_A 14 KCEECGKGFIC 24 (46)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCccchhCC
Confidence 68888888776
No 192
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=59.22 E-value=5.4 Score=36.58 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=20.0
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.|+.||..-... .+...+..||+||..+.+
T Consensus 246 ~C~~C~~~~~~~--~~~~~~~~C~~cg~~~~~ 275 (392)
T 3axs_A 246 YCFNCMNREVVT--DLYKFKEKCPHCGSKFHI 275 (392)
T ss_dssp ECTTTCCEEEEC--CGGGCCSBCTTTCSBCEE
T ss_pred ECCCCCCeEeec--CCCCCCCcCCCCCCccce
Confidence 699999754431 122346889999876644
No 193
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=59.14 E-value=5.2 Score=29.93 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=32.7
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
++..||.-|..+.. ..+.++.++||+-|..|.+++|+-...+.
T Consensus 42 ~~n~CpH~g~~L~~--g~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~ 84 (115)
T 2de6_D 42 TEDTCTHGIASLSE--GTLDGDVIECPFHGGAFNVCTGMPASSPC 84 (115)
T ss_dssp EESBCTTSSCBGGG--SEEETTEEECTTTCCEEETTTCCEEETTC
T ss_pred EeCCCCCCCCCCcC--CEEeCCEEECCCCCCEEcCCCcCEeCCCC
Confidence 45699999987653 23456789999999999998888776554
No 194
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=58.92 E-value=3.4 Score=28.83 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=5.7
Q ss_pred cccCCCCCCce
Q 025946 182 LQLCPYCSQPF 192 (245)
Q Consensus 182 ~iqCPnCGE~L 192 (245)
+..|+.|+..+
T Consensus 66 ~~~C~~C~~~f 76 (119)
T 2jp9_A 66 PFQCKTCQRKF 76 (119)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCccCchh
Confidence 45555555443
No 195
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.77 E-value=5.3 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=24.3
Q ss_pred ceeccCCCCCceeee--cccccC-------CCcccCCCCCCcee
Q 025946 159 IVQDSCPNCGNDFQI--FKSTLN-------DELQLCPYCSQPFS 193 (245)
Q Consensus 159 LIE~tCPnCG~eF~~--~ed~Ln-------~d~iqCPnCGE~L~ 193 (245)
++...|+.|++.++. .+..+. .+=..|..|+.+|.
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~ 46 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV 46 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC
Confidence 456689999999885 222222 23468999999886
No 196
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.42 E-value=3.5 Score=24.48 Aligned_cols=11 Identities=36% Similarity=1.056 Sum_probs=8.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emy_A 14 ECHECGKAFSR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCc
Confidence 68888887765
No 197
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.40 E-value=3.2 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=15.0
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eq4_A 14 NCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46 (46)
T ss_dssp CBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred ECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence 688888877753221 12235667666
No 198
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.32 E-value=3.7 Score=24.38 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ene_A 14 KCNECGKVFRH 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCchhCC
Confidence 68888888776
No 199
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.31 E-value=5.7 Score=26.72 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=26.9
Q ss_pred eeccCCCCCceeeeccccc-------CCCcccCCCCCCceeeeCCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTL-------NDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~L-------n~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
....|+.|++.++..+..+ ..+=..|-.|+.+|. ...-|.+++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~ 53 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYAVER 53 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT-TSCEEESSS
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC-cCcCEeeCC
Confidence 3458999999888643332 223468999999983 333344443
No 200
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=58.19 E-value=6.3 Score=26.16 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=27.7
Q ss_pred ceeccCCCCCceeeecccccCC------CcccCCCCCCceeeeCCeeEEecc
Q 025946 159 IVQDSCPNCGNDFQIFKSTLND------ELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~------d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
+....|+.|++.++. +-+... +=-.|..|+++|.. +.-+.+++.
T Consensus 3 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~ 52 (66)
T 1nyp_A 3 MGVPICGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLG-HRHYERKGL 52 (66)
T ss_dssp CCCCEETTTTEECCS-CEECCTTSBEETTTCBCTTTCCBCSS-SCCEEETTE
T ss_pred cCCCCCcccCCEecc-eEEEECccccccCcCEECCCCCCCCC-CceEeECCc
Confidence 456689999999883 322111 23579999999852 334444443
No 201
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=58.11 E-value=3.3 Score=24.61 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.2
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2em0_A 14 KCRECDMCFSQ 24 (46)
T ss_dssp CCSSSCCCCSS
T ss_pred ECCCCCcccCC
Confidence 67888877765
No 202
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.97 E-value=4.1 Score=24.08 Aligned_cols=11 Identities=36% Similarity=1.156 Sum_probs=8.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2en8_A 14 TCDECGKNFCY 24 (46)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCcCcccCC
Confidence 68888888765
No 203
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.83 E-value=3.8 Score=24.35 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=15.1
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ytd_A 14 KCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG 46 (46)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred ECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence 688888877753221 12235667766
No 204
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=57.76 E-value=4.9 Score=26.62 Aligned_cols=43 Identities=19% Similarity=0.401 Sum_probs=27.4
Q ss_pred eeccCCCCCceeeeccccc-------CCCcccCCCCCCceeeeCCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTL-------NDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~L-------n~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
....|+.|++.++..|.++ ..+=-.|-.|+.+|... .-+.+++
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g 59 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEG 59 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETT
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECC
Confidence 3448999999988644433 22345688899888644 3344443
No 205
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.72 E-value=5 Score=26.94 Aligned_cols=44 Identities=14% Similarity=0.377 Sum_probs=27.7
Q ss_pred ceeccCCCCCceeeecccccC-------CCcccCCCCCCceeeeCCeeEEec
Q 025946 159 IVQDSCPNCGNDFQIFKSTLN-------DELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln-------~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
++...|+.|++.++..+.++. .+=..|-.|+.+|... .-+.+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~ 53 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFIPKDN 53 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSS-SEEEETT
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCC-ccCccCC
Confidence 445689999999886433332 2246789999988532 3334444
No 206
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=57.71 E-value=2.6 Score=34.76 Aligned_cols=18 Identities=11% Similarity=0.420 Sum_probs=15.4
Q ss_pred CCcccCCCCCCceeeeCC
Q 025946 180 DELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~~ 197 (245)
++..+||+||..|++.+|
T Consensus 107 eg~L~C~~cg~~YPI~dG 124 (141)
T 2j6a_A 107 EGEMKCRNCGHIYYIKNG 124 (141)
T ss_dssp EEEEECTTTCCEEEEETT
T ss_pred CCEEECCCCCCcccccCC
Confidence 467899999999999887
No 207
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=57.63 E-value=17 Score=28.63 Aligned_cols=38 Identities=11% Similarity=0.289 Sum_probs=25.3
Q ss_pred hcCcceeccCCCCCceeeecc----cccCCC-------cccCCCCCCcee
Q 025946 155 ASRDIVQDSCPNCGNDFQIFK----STLNDE-------LQLCPYCSQPFS 193 (245)
Q Consensus 155 l~rnLIE~tCPnCG~eF~~~e----d~Ln~d-------~iqCPnCGE~L~ 193 (245)
-+..+++..+|++ ++++..+ |++.++ ...||||+.++.
T Consensus 33 ~~~k~l~~r~p~~-k~y~~~~~~~lDIfG~~~~~~~s~~~~C~nC~R~va 81 (99)
T 3mhs_C 33 TQQQLLKTRYPDL-RSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVS 81 (99)
T ss_dssp HHHHHHHHHCTTC-CCCCCCTTSCSCTTSCCCCCTTSCEEECTTTCCEEE
T ss_pred HHHHHHhccCCCC-CCceecCCCCcccCCCcCcccCCCeEECCCCCCCch
Confidence 4556677789998 5666544 333332 568999998663
No 208
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.61 E-value=3.8 Score=24.45 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=8.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2eoo_A 14 GCNECGKNFGR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred EccccCcccCC
Confidence 68888887765
No 209
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.46 E-value=2.9 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=15.9
Q ss_pred cCCCCCceeeeccccc-------CCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKSTL-------NDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-------n~d~iqCPnC 188 (245)
.|+.||+.|....++. .+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en6_A 14 GCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46 (46)
T ss_dssp EETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred ECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence 6888888887632221 2346677776
No 210
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.45 E-value=4.6 Score=23.95 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=8.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2enc_A 14 KCEECGKGFYT 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCCcCCC
Confidence 68888888765
No 211
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.26 E-value=4 Score=24.33 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em8_A 14 KCVECGKGYKR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECcccCchhCC
Confidence 68888877765
No 212
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=57.10 E-value=5.2 Score=40.84 Aligned_cols=38 Identities=29% Similarity=0.650 Sum_probs=27.8
Q ss_pred cCCCCCceeeecc---cccCCCcccCCCC---CCceeeeCCeeE
Q 025946 163 SCPNCGNDFQIFK---STLNDELQLCPYC---SQPFSVVDDKFV 200 (245)
Q Consensus 163 tCPnCG~eF~~~e---d~Ln~d~iqCPnC---GE~L~Vd~~~F~ 200 (245)
.||.||..|...+ ..+|...--||.| |....+|.+.-+
T Consensus 251 ~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~~~~d~~~~~ 294 (916)
T 3pih_A 251 MCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFEVDPSLVI 294 (916)
T ss_dssp BCTTTCCCCCCCSGGGGCTTSTTTBCTTTTTSSEEEEECSCCC-
T ss_pred cCcccCCccCCCCHhhcCCCCCCCcCCeeecccceEecCHHHcc
Confidence 8999998864422 3378888999999 567777777665
No 213
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=56.88 E-value=4.9 Score=36.03 Aligned_cols=31 Identities=13% Similarity=0.485 Sum_probs=20.4
Q ss_pred cCCC--CCceeeecccc----cCCCcccCCCCCCceee
Q 025946 163 SCPN--CGNDFQIFKST----LNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPn--CG~eF~~~ed~----Ln~d~iqCPnCGE~L~V 194 (245)
.|.. |++++.. +.. .....-.||.||..+..
T Consensus 161 ~C~~~~C~~~~~~-~~~~~~i~~~~~P~C~~Cgg~lrP 197 (323)
T 1j8f_A 161 HCVSASCRHEYPL-SWMKEKIFSEVTPKCEDCQSLVKP 197 (323)
T ss_dssp EESCTTTCCEECH-HHHHHHHHTTCCCBCTTTCCBEEE
T ss_pred ecCCCccCccccH-HHHHHhhccCCCCCCcCCCCccCC
Confidence 7999 9987532 221 13345699999987654
No 214
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=56.67 E-value=4.5 Score=36.39 Aligned_cols=26 Identities=19% Similarity=0.727 Sum_probs=20.5
Q ss_pred cCCCCCceeeeccccc---CCCcccCCCCCC
Q 025946 163 SCPNCGNDFQIFKSTL---NDELQLCPYCSQ 190 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L---n~d~iqCPnCGE 190 (245)
.||.||.++... .+ +.+...||.|.+
T Consensus 253 pC~~CGt~I~~~--~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVC--RFGENSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEE--CSSTTCCCEEECTTTSC
T ss_pred CCCCCCCEEEEE--EecCCCCCEEECCCccc
Confidence 999999887752 23 468999999964
No 215
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=56.66 E-value=4.7 Score=36.77 Aligned_cols=31 Identities=13% Similarity=0.577 Sum_probs=23.5
Q ss_pred cceeccCCC--CCceeeecccccCCCcccCCCCCCce
Q 025946 158 DIVQDSCPN--CGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 158 nLIE~tCPn--CG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
+.+-..||. |+++... -.++.-.|+.|++..
T Consensus 305 ~~~Y~aC~~~~C~kkv~~----~~~g~~~C~~C~~~~ 337 (444)
T 4gop_C 305 NLYYTACASEGCNKKVNL----DHENNWRCEKCDRSY 337 (444)
T ss_dssp TCEEEECCSTTCCCBEEE----CTTSCEEETTTTEEE
T ss_pred ceEEccCCcccCCCcccc----CCCccEECCCCCCcC
Confidence 455568999 9999876 234678999999764
No 216
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.64 E-value=3.6 Score=24.47 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=15.9
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2en1_A 14 KCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp EETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred eCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 688888888763322 12235677766
No 217
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=56.44 E-value=5.4 Score=34.79 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=9.1
Q ss_pred ccCCCCCceee
Q 025946 162 DSCPNCGNDFQ 172 (245)
Q Consensus 162 ~tCPnCG~eF~ 172 (245)
..|..|++++.
T Consensus 135 ~~C~~C~~~~~ 145 (273)
T 3riy_A 135 TRCTSCGVVAE 145 (273)
T ss_dssp EEETTTCCEEE
T ss_pred eEcCCCCCccc
Confidence 39999998864
No 218
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.08 E-value=3.9 Score=24.29 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=8.0
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2ytn_A 14 KCNECGKVFTQ 24 (46)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCCeeCC
Confidence 67777777765
No 219
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=55.97 E-value=11 Score=29.13 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=32.5
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeee-CCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV-DDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd-~~~F~R~~ 203 (245)
+...||.-|..+.. ..+.+.++||.-|..|.++ +|+-...+
T Consensus 56 ~~n~CpH~g~~L~~---~~~~~~i~CP~Hg~~Fd~~~~G~~~~gP 97 (133)
T 1g8k_B 56 YSVLCTHMGCPTSY---DSSSKTFSCPCHFTEFDAEKAGQMICGE 97 (133)
T ss_dssp EECBCTTTCCBCEE---ETTTTEEECTTTCCEEEGGGTTEEEESS
T ss_pred EeCcCCCCCCCCCc---ccCCCEEECCCCCCEECCCCCCCEEcCC
Confidence 45699999988864 2456789999999999998 78876544
No 220
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=55.92 E-value=7.5 Score=30.35 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=24.0
Q ss_pred CcceeccCCCCCceeeecccc-c--CCCc----ccCCCCCCceeeeC
Q 025946 157 RDIVQDSCPNCGNDFQIFKST-L--NDEL----QLCPYCSQPFSVVD 196 (245)
Q Consensus 157 rnLIE~tCPnCG~eF~~~ed~-L--n~d~----iqCPnCGE~L~Vd~ 196 (245)
-...+..||.||..=..+-.. + .+++ ..|.+||..+..++
T Consensus 68 ~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 68 LPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp SCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred ccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 344577999999873332111 1 1122 58999998876543
No 221
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=55.75 E-value=2.4 Score=30.99 Aligned_cols=32 Identities=25% Similarity=0.722 Sum_probs=17.9
Q ss_pred CCCCCceeee--cccccCCCcccCCCCCCceeee
Q 025946 164 CPNCGNDFQI--FKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 164 CPnCG~eF~~--~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
|..||..|.. .+..+......||.|.+++..+
T Consensus 38 ~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 38 CPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp CTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 3455555543 1222233347899999988643
No 222
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.64 E-value=3.9 Score=24.27 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=7.9
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eoq_A 14 KCDICGKSFCG 24 (46)
T ss_dssp CCSSSCCCCSS
T ss_pred CCCcCCchhCC
Confidence 67777777765
No 223
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=55.23 E-value=5.3 Score=23.78 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2el6_A 14 KCSQCEKSFSG 24 (46)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCcccCC
Confidence 68888888765
No 224
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.22 E-value=6.2 Score=26.63 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=25.7
Q ss_pred eccCCCCCceeee--cccccC-------CCcccCCCCCCceeeeCCeeE
Q 025946 161 QDSCPNCGNDFQI--FKSTLN-------DELQLCPYCSQPFSVVDDKFV 200 (245)
Q Consensus 161 E~tCPnCG~eF~~--~ed~Ln-------~d~iqCPnCGE~L~Vd~~~F~ 200 (245)
...|+.|++.++. .+.++. .+=..|-.|+.+|. +..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~ 51 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV--GRGFL 51 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT--TSCCE
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC--CCccE
Confidence 3589999999986 333332 23468999999885 44454
No 225
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=55.15 E-value=4.9 Score=29.54 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=30.5
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEE
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R 201 (245)
++..||.-|..+.. ..+.++.++||+-|..|..+.|+-..
T Consensus 40 ~~~~CpH~g~~L~~--g~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 79 (111)
T 1vm9_A 40 YQAMCPHQEILLSE--GSYEGGVITCRAHLWTFNDGTGHGIN 79 (111)
T ss_dssp EESBCSSSSCBGGG--SEEETTEEECTTTCCEEETTTCBBSS
T ss_pred EeCcCCCCCcCCCC--ceEcCCEEEcCCCCCEEeCCCccCCC
Confidence 55699999987653 23456789999999999998776553
No 226
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.13 E-value=4.6 Score=33.71 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=19.1
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
..|+.|+.+|.. -.-.-.|.+||..+
T Consensus 162 ~~C~~C~~~F~~-----~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTF-----TNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCS-----SSCCEECTTTCCEE
T ss_pred CccCCCCCccCC-----cccccccCCcCCEE
Confidence 599999999875 33456777777654
No 227
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.08 E-value=2.6 Score=29.08 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=11.2
Q ss_pred cccCCCCCCceeee
Q 025946 182 LQLCPYCSQPFSVV 195 (245)
Q Consensus 182 ~iqCPnCGE~L~Vd 195 (245)
...||.|.+++..+
T Consensus 56 ~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 56 GVRCPFCSKITRIT 69 (88)
T ss_dssp CBCCTTTCCCBCCS
T ss_pred CcCCCCCCCcccch
Confidence 47899999987654
No 228
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.07 E-value=3.4 Score=24.55 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=15.5
Q ss_pred cCCCCCceeeecccc-------cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-------LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-------Ln~d~iqCPnC 188 (245)
.|+.||+.|....++ ..+.+..|+.|
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ysp_A 14 KCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46 (46)
T ss_dssp EETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred ECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence 688888888763222 01235667766
No 229
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=54.92 E-value=5.4 Score=40.25 Aligned_cols=33 Identities=27% Similarity=0.752 Sum_probs=23.9
Q ss_pred HhcCcceeccCCCCCceeeecccccCCCcccCC--CCCC
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKSTLNDELQLCP--YCSQ 190 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCP--nCGE 190 (245)
+-...+...+||.||+.|-. +..+...|+ .|++
T Consensus 13 ~~~~g~~r~~c~~cg~~fwt----~~~~r~~cgd~~c~~ 47 (739)
T 2ztg_A 13 LTENGFVRKRCPKCGKHFWT----ADPEREICGDPPCES 47 (739)
T ss_dssp HHTTTCEEECCCSSSSCEEE----CCSSCCCCCSSSSCC
T ss_pred HHHCCcEEeECCCCCCceec----CCCCcCCCCCCCCCC
Confidence 44556677799999999998 565666663 6744
No 230
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.79 E-value=3.1 Score=24.65 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=15.5
Q ss_pred cCCCCCceeeeccccc-------CCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKSTL-------NDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L-------n~d~iqCPnC 188 (245)
.|+.||+.|....++. .+-+..|+.|
T Consensus 14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eoe_A 14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46 (46)
T ss_dssp EETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred ECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 6888888877632221 1235677766
No 231
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=54.50 E-value=6.9 Score=30.69 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=20.0
Q ss_pred eccCCCCCceeeecccc--c----CCCcccCCCCCCceeeeC
Q 025946 161 QDSCPNCGNDFQIFKST--L----NDELQLCPYCSQPFSVVD 196 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~--L----n~d~iqCPnCGE~L~Vd~ 196 (245)
...||.|+..+.-.+-. + ..-.+.||+|++.+...+
T Consensus 110 ~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 110 LMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFED 151 (170)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGG
T ss_pred eeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHHH
Confidence 34678888776542110 1 112566888877766543
No 232
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=54.33 E-value=6.9 Score=28.97 Aligned_cols=21 Identities=24% Similarity=0.809 Sum_probs=16.1
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCC
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
|-.|-+|.. +. +...|||||.
T Consensus 11 ~~AC~~C~~-~~--------~~~~CPnC~s 31 (69)
T 1ryq_A 11 EKACRHCHY-IT--------SEDRCPVCGS 31 (69)
T ss_dssp CEEETTTCB-EE--------SSSSCTTTCC
T ss_pred hhhHHhCCc-cc--------cCCcCCCccC
Confidence 557999997 22 5779999984
No 233
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=54.28 E-value=6.6 Score=24.66 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=18.6
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.||.|+..-+. ....|-.|+++-
T Consensus 8 ~C~~C~~~Nfa-------~R~~C~~C~~pk 30 (33)
T 2k1p_A 8 QCKTCSNVNWA-------RRSECNMCNTPK 30 (33)
T ss_dssp BCSSSCCBCCT-------TCSBCSSSCCBT
T ss_pred ccCCCCCcccc-------ccccccccCCcC
Confidence 79999987666 578888998874
No 234
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.15 E-value=4.9 Score=23.83 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ep2_A 14 ECSICGKSFTK 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCC
Confidence 68888877765
No 235
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=54.03 E-value=7.5 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.588 Sum_probs=22.3
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEE
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R 201 (245)
-.||.|+..... .+....|++|. .+.+..+.|..
T Consensus 3 ~~Cp~C~~~~~~-----~~~~~~C~~~~-~~~~~~~Gy~~ 36 (269)
T 1p91_A 3 FSCPLCHQPLSR-----EKNSYICPQRH-QFDMAKEGYVN 36 (269)
T ss_dssp BBCTTTCCBCEE-----ETTEEECTTCC-EEEBCTTSCEE
T ss_pred ccCCCCCcccee-----CCCEEECCCCC-cCCcCCCEEEE
Confidence 479999987654 34577999986 44444444443
No 236
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=53.92 E-value=4.2 Score=26.96 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=4.0
Q ss_pred cccCCCCCC
Q 025946 182 LQLCPYCSQ 190 (245)
Q Consensus 182 ~iqCPnCGE 190 (245)
+..||.|+.
T Consensus 65 ~~~C~~C~~ 73 (89)
T 2wbs_A 65 PFQCQKCDR 73 (89)
T ss_dssp CEECSSSSC
T ss_pred CccCCCCCc
Confidence 344444443
No 237
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.92 E-value=4.6 Score=23.97 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.2
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2eq0_A 14 KCHECGKVFRR 24 (46)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCchhCC
Confidence 68888877765
No 238
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=53.76 E-value=0.91 Score=39.71 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=7.4
Q ss_pred cCCCCCce
Q 025946 163 SCPNCGND 170 (245)
Q Consensus 163 tCPnCG~e 170 (245)
+||.||.+
T Consensus 14 ~C~~Cg~~ 21 (416)
T 4e2x_A 14 ACRVCGGG 21 (416)
T ss_dssp ECTTTSCE
T ss_pred cCCCCCCe
Confidence 79999988
No 239
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.69 E-value=8.7 Score=25.71 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=24.7
Q ss_pred ceeccCCCCCceeeecccccCC-------CcccCCCCCCceee
Q 025946 159 IVQDSCPNCGNDFQIFKSTLND-------ELQLCPYCSQPFSV 194 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~-------d~iqCPnCGE~L~V 194 (245)
+....|+.|++.++..+.++.- +=..|-.|+.+|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 45 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS 45 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTT
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCC
Confidence 4456899999999864333332 23678999998853
No 240
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.67 E-value=5.5 Score=23.68 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=8.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytq_A 14 GCSECGKAFSS 24 (46)
T ss_dssp BCSSSCCBCSC
T ss_pred CCCccChhhCC
Confidence 68888877765
No 241
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=53.54 E-value=4.9 Score=20.99 Aligned_cols=11 Identities=45% Similarity=1.225 Sum_probs=8.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 5 ~C~~C~k~f~~ 15 (28)
T 2kvf_A 5 SCSVCGKRFSL 15 (28)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCCCcccCC
Confidence 68888888765
No 242
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.39 E-value=5.9 Score=23.23 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=8.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 12 ~C~~C~k~f~~ 22 (44)
T 2emx_A 12 GCSCCEKAFSS 22 (44)
T ss_dssp ECSSSSCEESS
T ss_pred cCCCCCcccCC
Confidence 68888887776
No 243
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.35 E-value=5.3 Score=29.10 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=19.3
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
...|+.|+++|.. + .-.-.|-+||+.+
T Consensus 21 ~~~C~~C~~~Fs~----~-~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTT----T-VRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCT----T-SCCEECTTTCCEE
T ss_pred CCCCcCcCCcccc----c-hhcccccCCCcEE
Confidence 3489999999886 3 3456777777654
No 244
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=53.26 E-value=2.6 Score=42.20 Aligned_cols=35 Identities=17% Similarity=0.528 Sum_probs=21.5
Q ss_pred cCCCCCceeeecccc-cCCCcccCCCCCCceeeeCC
Q 025946 163 SCPNCGNDFQIFKST-LNDELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln~d~iqCPnCGE~L~Vd~~ 197 (245)
-||.|..|+.+-.|= +.-.|+-||.||=.+...+.
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l~l~~~ 193 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSYRLYTS 193 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCEEEESS
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceEEEEcC
Confidence 355555554442221 33458899999998887654
No 245
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=53.25 E-value=5.2 Score=27.06 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=6.1
Q ss_pred cccCCCCCCce
Q 025946 182 LQLCPYCSQPF 192 (245)
Q Consensus 182 ~iqCPnCGE~L 192 (245)
+..|+.|+..+
T Consensus 75 ~~~C~~C~~~f 85 (100)
T 2ebt_A 75 PFQCGVCNRSF 85 (100)
T ss_dssp SCBCSSSCCBC
T ss_pred CeECCCCcCcc
Confidence 45566665544
No 246
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.02 E-value=9.4 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=28.5
Q ss_pred ceeccCCCCCceeeeccccc-------CCCcccCCCCCCceeeeCCeeEEec
Q 025946 159 IVQDSCPNCGNDFQIFKSTL-------NDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~L-------n~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
+....|+.|++.++..+.++ ..+=-.|-.|+++|... .-+.+++
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g 59 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEG 59 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSEEETT
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeEeECC
Confidence 44568999999998644443 22336788999988644 3445544
No 247
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.77 E-value=5.5 Score=28.96 Aligned_cols=26 Identities=27% Similarity=0.875 Sum_probs=17.3
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
..|+.|+.+|.. + .-.-.|-+||..+
T Consensus 15 ~~C~~C~~~F~~----~-~RrHHCR~CG~vf 40 (84)
T 1x4u_A 15 GNCTGCSATFSV----L-KKRRSCSNCGNSF 40 (84)
T ss_dssp SSCSSSCCCCCS----S-SCCEECSSSCCEE
T ss_pred CcCcCcCCcccc----c-hhhhhhcCCCcEE
Confidence 489999999975 3 3345566665543
No 248
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.67 E-value=4.4 Score=24.22 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=7.9
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytm_A 14 KCMECGKAFGD 24 (46)
T ss_dssp SBTTTTBCCSS
T ss_pred CCCCCCchhCC
Confidence 67777777765
No 249
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.61 E-value=5.9 Score=26.46 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=12.3
Q ss_pred CcccCCCCCCceeeeC
Q 025946 181 ELQLCPYCSQPFSVVD 196 (245)
Q Consensus 181 d~iqCPnCGE~L~Vd~ 196 (245)
....||.|.+++..++
T Consensus 56 ~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 56 GFFKCPLCKTSVRKNA 71 (73)
T ss_dssp SCCCCSSSCCCCCCCC
T ss_pred CCCCCCCCCCcCCccc
Confidence 5678999999887654
No 250
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.55 E-value=5.7 Score=29.44 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=19.2
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
..|..|+.+|.. + .-.-.|.+||+.+
T Consensus 21 ~~C~~C~~~F~~----~-~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTF----T-KRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCS----S-SCCEECTTTCCEE
T ss_pred CcCcCCCCcccc----h-hhCccccCCCCEE
Confidence 379999999875 3 3456788887755
No 251
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=52.36 E-value=4.8 Score=28.45 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=5.0
Q ss_pred cccCCCCCCce
Q 025946 182 LQLCPYCSQPF 192 (245)
Q Consensus 182 ~iqCPnCGE~L 192 (245)
+..|+.|+..+
T Consensus 34 ~~~C~~C~~~f 44 (124)
T 1ubd_C 34 VHVCAECGKAF 44 (124)
T ss_dssp CEECTTTCCEE
T ss_pred CeECCCCCchh
Confidence 34455554433
No 252
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=52.28 E-value=5.3 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=8.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvh_A 5 SCSLCPQRSRD 15 (27)
T ss_dssp ECSSSSCEESS
T ss_pred cCCCcChhhCC
Confidence 68888888765
No 253
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=52.17 E-value=7.7 Score=28.89 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=18.4
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||.||++-.-- ..-+-=.|..||+.+
T Consensus 27 y~C~fCgk~~vkR---~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 27 YDCSFCGKKTVKR---GAAGIWTCSCCKKTV 54 (72)
T ss_dssp BCCSSCCSSCBSB---CSSSCBCCSSSCCCC
T ss_pred ccCCCCCCceeEe---cCCCeEECCCCCCEE
Confidence 3999999773321 111345899999876
No 254
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=52.16 E-value=4.1 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=19.7
Q ss_pred cCCCCCceeeecc--------cccCCCcccCC--CCCCceeeeC
Q 025946 163 SCPNCGNDFQIFK--------STLNDELQLCP--YCSQPFSVVD 196 (245)
Q Consensus 163 tCPnCG~eF~~~e--------d~Ln~d~iqCP--nCGE~L~Vd~ 196 (245)
+||.|..++...+ ..+++-.+.|| .|.+...+++
T Consensus 55 ~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp BCTTTCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGG
T ss_pred CCCCCCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHH
Confidence 7888877766521 22334466776 5666655443
No 255
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.10 E-value=5.1 Score=23.68 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (47)
T 2epx_A 14 ECIECGKAFIQ 24 (47)
T ss_dssp CCSSSCCCBSS
T ss_pred ECCccCchhCC
Confidence 68888877775
No 256
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.02 E-value=5.5 Score=23.67 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emf_A 14 ECTECGKAFTR 24 (46)
T ss_dssp ECSSSCCEESC
T ss_pred ECCCCCchhCC
Confidence 68888877765
No 257
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=51.80 E-value=5.8 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=22.0
Q ss_pred eeccCC-CCCceeeec--ccccCC----CcccCCCCCCceeee
Q 025946 160 VQDSCP-NCGNDFQIF--KSTLND----ELQLCPYCSQPFSVV 195 (245)
Q Consensus 160 IE~tCP-nCG~eF~~~--ed~Ln~----d~iqCPnCGE~L~Vd 195 (245)
..+.|| .||..+.-- ++=+++ -.+.|++|++.+..+
T Consensus 15 ~~v~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~ 57 (76)
T 2yuc_A 15 NVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGE 57 (76)
T ss_dssp SCCBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHH
T ss_pred cccCCCccccHHhhHhHHHhhCHhhCCCcceECCCCCCccCHH
Confidence 446886 699776641 111221 267799998877544
No 258
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=51.79 E-value=5.5 Score=20.77 Aligned_cols=11 Identities=36% Similarity=1.062 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 1rik_A 4 ACPECPKRFMR 14 (29)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 68888888765
No 259
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=51.40 E-value=6 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=17.5
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
+||-||+.-..- ..-+--.|..|+..+
T Consensus 29 ~C~fCgk~~vkR---~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 29 KCPVCGFPKLKR---ASTSIWVCGHCGYKI 55 (73)
T ss_pred cCCCCCCceeEE---EEeEEEECCCCCcEE
Confidence 899999742220 111457799998765
No 260
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=51.34 E-value=5 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=8.0
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 1ard_A 4 VCEVCTRAFAR 14 (29)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCcccCC
Confidence 58888877754
No 261
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=51.19 E-value=12 Score=26.11 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=19.0
Q ss_pred CcccCCCCCCceeeeCCeeEEe
Q 025946 181 ELQLCPYCSQPFSVVDDKFVRE 202 (245)
Q Consensus 181 d~iqCPnCGE~L~Vd~~~F~R~ 202 (245)
+-..||.|..+|..++++.+..
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~ 30 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICT 30 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEEC
T ss_pred hheeCCCCCCcceecCCEEEcC
Confidence 4679999999999999888766
No 262
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.13 E-value=15 Score=25.23 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=26.8
Q ss_pred eccCCCCCceeeecccccCC-------CcccCCCCCCceeeeCCee-EEec
Q 025946 161 QDSCPNCGNDFQIFKSTLND-------ELQLCPYCSQPFSVVDDKF-VRES 203 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~-------d~iqCPnCGE~L~Vd~~~F-~R~~ 203 (245)
...|..|++.++..+.++.- +=..|-.|+++|. +..| .+++
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~ 63 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA--DEPFTCQDS 63 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS--SCCEEEETT
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC--CCccEeeCC
Confidence 45899999999843444432 2367899999886 3344 4444
No 263
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=51.05 E-value=5.7 Score=20.41 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=7.1
Q ss_pred cccCCCCCCce
Q 025946 182 LQLCPYCSQPF 192 (245)
Q Consensus 182 ~iqCPnCGE~L 192 (245)
+..|+.||..+
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 2m0e_A 2 EHKCPHCDKKF 12 (29)
T ss_dssp CCCCSSCCCCC
T ss_pred CCcCCCCCccc
Confidence 34677777655
No 264
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.03 E-value=4 Score=27.14 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=12.4
Q ss_pred cCCCcccCCCCCCceeee
Q 025946 178 LNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 178 Ln~d~iqCPnCGE~L~Vd 195 (245)
+++....||.|.+++..+
T Consensus 46 ~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 46 LSSSSPKCTACQESIVKD 63 (66)
T ss_dssp HTTSSCCCTTTCCCCCTT
T ss_pred HHhCcCCCCCCCcCCChh
Confidence 334567899998887654
No 265
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=50.77 E-value=6.2 Score=36.99 Aligned_cols=31 Identities=35% Similarity=0.745 Sum_probs=20.2
Q ss_pred cCCCCCceeeecccc-cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln~d~iqCPnCGE~L~ 193 (245)
.|++|+.+.....+. -..++..||+||.++.
T Consensus 36 ~c~~c~~~~~~~~~~~~~~~~~~c~~c~~~~~ 67 (681)
T 2pzi_A 36 FCWNCGRPVGRSDSETKGASEGWCPYCGSPYS 67 (681)
T ss_dssp BCTTTCCBCSCC-----CCSEEECTTTCCEEE
T ss_pred cCccCCCcCCCcccCCCcccCCcCCCCCCccc
Confidence 699999886432111 2234678999999875
No 266
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.51 E-value=5.8 Score=23.47 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ep0_A 14 KCDVCHKSFRY 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCcccCcccCC
Confidence 68888888776
No 267
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=50.39 E-value=9 Score=32.88 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=20.7
Q ss_pred cCCCCCceeeecccccCC--CcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTLND--ELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~--d~iqCPnCGE~L~ 193 (245)
.||.||..+-.. .|. .+-.|+.||++|.
T Consensus 133 ~~~~~G~~Yh~~---~~pp~~~~~~d~~g~~L~ 162 (230)
T 3gmt_A 133 THPASGRTYHVK---FNPPKVEGKDDVTGEPLV 162 (230)
T ss_dssp EETTTTEEEETT---TBCCSSTTBCTTTCCBCB
T ss_pred cccccCCccccc---CCCCCccCcCCCccCccc
Confidence 799999776651 333 3668999999885
No 268
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.36 E-value=6 Score=23.44 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=8.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytk_A 14 KCNECGKVFTQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCCcCCCccCC
Confidence 67778777765
No 269
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=50.32 E-value=5.6 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=8.0
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 58888877764
No 270
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=55.45 E-value=3.4 Score=21.44 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=8.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 68888888775
No 271
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.91 E-value=5 Score=34.27 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=23.7
Q ss_pred ccCCCCCceeeec--cccc-CCCcccCCCCCCceeee
Q 025946 162 DSCPNCGNDFQIF--KSTL-NDELQLCPYCSQPFSVV 195 (245)
Q Consensus 162 ~tCPnCG~eF~~~--ed~L-n~d~iqCPnCGE~L~Vd 195 (245)
..|-.|..++..- -++. .+.-++|||||--|..+
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 3899999887641 1112 34579999999988643
No 272
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=49.67 E-value=4.4 Score=31.75 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=12.3
Q ss_pred cCCCcccCCCCCCceee
Q 025946 178 LNDELQLCPYCSQPFSV 194 (245)
Q Consensus 178 Ln~d~iqCPnCGE~L~V 194 (245)
+..+...||.|.+++..
T Consensus 86 ~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 86 LRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHTTCCBCTTTCCBCCS
T ss_pred HHhCcCCCCCCCCcCCC
Confidence 33446789999999853
No 273
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=49.38 E-value=4.5 Score=31.09 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=24.2
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
..++..|+.||.+.+.. -.-.++...||.|.++
T Consensus 146 ~~~~~~~~~~~~~~~~~-v~~~~g~~~c~~c~~~ 178 (184)
T 1pvm_A 146 KDYQHLCPKCGVGVLEP-VYNEKGEIKVFRCSNP 178 (184)
T ss_dssp CCCCCBCTTTSSSBEEE-EECTTSCEEEEEESCT
T ss_pred cceeeeccccCCccccc-eEEECCEEEccccCCc
Confidence 33588999999866654 2234578899999876
No 274
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.25 E-value=13 Score=25.46 Aligned_cols=43 Identities=19% Similarity=0.405 Sum_probs=27.3
Q ss_pred eeccCCCCCceeeeccccc------CCCcccCCCCCCceeeeCCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTL------NDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~L------n~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
+-..|+.|++.+++ +-+. ..+=..|-.|+++|...+.-+.+++
T Consensus 4 ~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~ 52 (73)
T 1wig_A 4 GSSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGS 52 (73)
T ss_dssp SCCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETT
T ss_pred CcCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCC
Confidence 44589999998886 2221 1234689999999865444344443
No 275
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=49.07 E-value=6.3 Score=23.31 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=8.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ema_A 14 KCNECGKVFSR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCcchhCC
Confidence 67788877765
No 276
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=49.07 E-value=8.3 Score=29.39 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.0
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCC
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
..+..|-+|+.-.. +.+|||||.
T Consensus 21 m~~rAC~~C~~v~~---------~d~CPnCgs 43 (81)
T 3p8b_A 21 MSEKACRHCHYITS---------EDRCPVCGS 43 (81)
T ss_dssp -CCEEETTTCBEES---------SSSCTTTCC
T ss_pred hhHHHHhhCCCccC---------CCCCCCCCC
Confidence 34568999996532 227999987
No 277
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=49.00 E-value=3.5 Score=41.40 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.2
Q ss_pred CcccCCCCCCceeeeC
Q 025946 181 ELQLCPYCSQPFSVVD 196 (245)
Q Consensus 181 d~iqCPnCGE~L~Vd~ 196 (245)
.|+-||.||=.+...+
T Consensus 182 qp~aC~~CGP~l~l~~ 197 (761)
T 3vth_A 182 QPVACFDCGPSLSFVG 197 (761)
T ss_dssp TTCCCTTTSCCEEEES
T ss_pred CCCcCCccCCeeEEeC
Confidence 5888999999988654
No 278
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=48.70 E-value=7 Score=27.89 Aligned_cols=20 Identities=25% Similarity=0.748 Sum_probs=13.9
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCC
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
+.|-+|+.-... ..|||||.
T Consensus 2 rAC~~C~~v~~~---------~~CpnC~~ 21 (59)
T 3lpe_B 2 RACLKCKYLTND---------EICPICHS 21 (59)
T ss_dssp EEETTTCBEESS---------SBCTTTCC
T ss_pred cccccCCcccCC---------CCCCCCCC
Confidence 368889855322 27999997
No 279
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=48.54 E-value=9.7 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=19.0
Q ss_pred eccCCCCCceeeecccc-c--CCCc----ccCCCCCCcee
Q 025946 161 QDSCPNCGNDFQIFKST-L--NDEL----QLCPYCSQPFS 193 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~-L--n~d~----iqCPnCGE~L~ 193 (245)
+..||.||..-..+-.. + .+++ ..|.+||..+.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 34899999764432221 1 1122 58889987654
No 280
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.49 E-value=6.3 Score=33.36 Aligned_cols=26 Identities=27% Similarity=0.772 Sum_probs=18.1
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
..|+.|+.+|.. ++ -.-.|.+||..+
T Consensus 165 ~~C~~C~~~F~~----~~-RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGV----MT-RKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBT----TB-CCEECTTTCCEE
T ss_pred CCCcCcCCCCCc----cc-cccccCCCcCEe
Confidence 389999999886 33 345677776654
No 281
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=48.48 E-value=5.9 Score=20.80 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1paa_A 4 ACGLCNRAFTR 14 (30)
T ss_dssp BCTTTCCBCSS
T ss_pred CCcccCcccCC
Confidence 68888887764
No 282
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.41 E-value=12 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.375 Sum_probs=27.9
Q ss_pred eeccCCCCCceeeecccc------cCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 160 VQDSCPNCGNDFQIFKST------LNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
....|+.|++.++..+-+ ...+=..|..|+++|. .+.-+.+++.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~ 57 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT-PGGHAEHDGK 57 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC-TTSCEEETTE
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC-CCceEeECCE
Confidence 345899999998853333 2223468999999986 2334455443
No 283
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.35 E-value=7.3 Score=29.70 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=18.7
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||.||++-.-- ..-+-=.|..||+.+
T Consensus 36 y~CpfCGk~~vkR---~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 36 HTCPVCGRKAVKR---ISTGIWQCQKCGATF 63 (83)
T ss_dssp BCCSSSCSSCEEE---EETTEEEETTTCCEE
T ss_pred cCCCCCCCceeEe---cCcCeEEcCCCCCEE
Confidence 3899999874331 112445899999875
No 284
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=48.06 E-value=6.6 Score=20.24 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=8.2
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2m0f_A 4 KCRECGKQFTT 14 (29)
T ss_dssp ECTTTSCEESC
T ss_pred cCCCCCCccCC
Confidence 58888877764
No 285
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.87 E-value=4.6 Score=24.04 Aligned_cols=11 Identities=36% Similarity=1.062 Sum_probs=7.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytt_A 14 QCSECGKSFSG 24 (46)
T ss_dssp CCSSSCCCCSS
T ss_pred eCCCCCcccCC
Confidence 57777777665
No 286
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=47.78 E-value=6.2 Score=31.14 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=25.5
Q ss_pred ceeccCCCCCceeee--cccccCCC--cccCCCCCCceeee
Q 025946 159 IVQDSCPNCGNDFQI--FKSTLNDE--LQLCPYCSQPFSVV 195 (245)
Q Consensus 159 LIE~tCPnCG~eF~~--~ed~Ln~d--~iqCPnCGE~L~Vd 195 (245)
.++-||-.|+.+..- .+...+++ -++||.|...--+.
T Consensus 11 ~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIa 51 (100)
T 2e2z_A 11 MIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIA 51 (100)
T ss_dssp EEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESC
T ss_pred EEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEee
Confidence 355699999986543 44555555 78999997754443
No 287
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=47.61 E-value=6.7 Score=20.30 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 5 ~C~~C~~~f~~ 15 (30)
T 2m0d_A 5 QCDYCGRSFSD 15 (30)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCcccCC
Confidence 68888888765
No 288
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=47.36 E-value=8 Score=30.05 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=18.3
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||.||++-.-- ..-+-=.|..||..+
T Consensus 37 y~CpfCgk~~vkR---~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 37 YDCSFCGKKTVKR---GAAGIWTCSCCKKTV 64 (92)
T ss_dssp CCCSSSCSSCCEE---EETTEEECTTTCCEE
T ss_pred CcCCCCCCceeee---cccceEEcCCCCCEE
Confidence 3899999764321 111344899999865
No 289
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=47.03 E-value=3.6 Score=32.35 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=22.0
Q ss_pred ccCCCCCCceeeeCCeeEEeccc----ccccccccccccccc
Q 025946 183 QLCPYCSQPFSVVDDKFVRESVR----FSNESTTFGQAFSDF 220 (245)
Q Consensus 183 iqCPnCGE~L~Vd~~~F~R~~~~----f~~~~~~~~~af~~~ 220 (245)
+.||+|| +.++.+|.--+.- ....++...++|.+|
T Consensus 4 I~CP~CG---~R~e~EF~ygGeA~~~RP~~~~~~sd~ew~dY 42 (99)
T 2gag_D 4 IDCPNCG---PRNENEFKYGGEAHVAYPADPHALSDKQWSRY 42 (99)
T ss_dssp EEETTTE---EEEGGGSEEEEESSCCCCSCGGGSCHHHHHHH
T ss_pred ecCCCCC---CcchhhEecCceecccCCCCCccCCHHHHHHH
Confidence 6799999 4778888776643 323333344666664
No 290
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.76 E-value=7.1 Score=23.07 Aligned_cols=11 Identities=45% Similarity=1.226 Sum_probs=8.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytj_A 14 ICAECGKAFTI 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCChhhCC
Confidence 67778877765
No 291
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=46.74 E-value=6.2 Score=25.67 Aligned_cols=30 Identities=30% Similarity=0.729 Sum_probs=15.3
Q ss_pred cC--CCCCceeeecccc-------cCCCcccCCC--CCCce
Q 025946 163 SC--PNCGNDFQIFKST-------LNDELQLCPY--CSQPF 192 (245)
Q Consensus 163 tC--PnCG~eF~~~ed~-------Ln~d~iqCPn--CGE~L 192 (245)
.| +.||+.|....++ ..+.+..||. |+..+
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f 43 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 43 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEE
T ss_pred cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCcc
Confidence 46 6677666542111 1123566766 76544
No 292
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=46.67 E-value=5.7 Score=26.26 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=11.8
Q ss_pred CcccCCCCCCceeeeC
Q 025946 181 ELQLCPYCSQPFSVVD 196 (245)
Q Consensus 181 d~iqCPnCGE~L~Vd~ 196 (245)
+...||-||+.+++++
T Consensus 8 ~~~~C~~C~~~i~~~~ 23 (39)
T 2i5o_A 8 DQVPCEKCGSLVPVWD 23 (39)
T ss_dssp CEEECTTTCCEEEGGG
T ss_pred CCcccccccCcCCccc
Confidence 4567888888887653
No 293
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=46.64 E-value=4.6 Score=30.06 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=21.1
Q ss_pred cCCCCCceeeecccc------cC-----CCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKST------LN-----DELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~------Ln-----~d~iqCPnCGE~L 192 (245)
.|+.||+.|.....+ .. +.+..|+.||..+
T Consensus 20 ~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F 60 (102)
T 2ghf_A 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60 (102)
T ss_dssp ECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEE
T ss_pred CCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCccc
Confidence 799999999763221 12 3478999998765
No 294
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=46.56 E-value=6.6 Score=20.31 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1klr_A 4 QCQYCEFRSAD 14 (30)
T ss_dssp CCSSSSCCCSC
T ss_pred cCCCCCCccCC
Confidence 68888887765
No 295
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.46 E-value=8.8 Score=30.06 Aligned_cols=33 Identities=27% Similarity=0.762 Sum_probs=22.3
Q ss_pred HhcCcceeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
|+..+- ...|+.|+.+|.. -.-.-.|.+||..+
T Consensus 63 W~~d~~-~~~C~~C~~~Fs~-----~~RrHHCR~CG~vf 95 (125)
T 1joc_A 63 WAEDNE-VQNCMACGKGFSV-----TVRRHHCRQCGNIF 95 (125)
T ss_dssp CCCGGG-CCBCTTTCCBCCS-----SSCCEECTTTCCEE
T ss_pred cccCCC-CCCCcCcCCcccc-----ccccccCCCCCeEE
Confidence 554332 3389999999876 33456788887755
No 296
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=46.30 E-value=5.3 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=8.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvg_A 5 RCPLCRAGCPS 15 (27)
T ss_dssp EETTTTEEESC
T ss_pred CCCCCCcccCC
Confidence 68889888765
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.04 E-value=13 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=21.4
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.||.||..+... ..--..+..|..||+.+.-
T Consensus 129 ~~~~~g~~y~~~-~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3fb4_A 129 ICKTCGATYHTI-FNPPAVEGICDKDGGELYQ 159 (216)
T ss_dssp EETTTCCEEETT-TBCCSSTTBCTTTCCBEEC
T ss_pred CCCccCCccccc-cCCCCcccccccccCcccc
Confidence 899999877652 1111236789999987753
No 298
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=46.03 E-value=12 Score=27.00 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=18.9
Q ss_pred cCCC--CCceeeecccccCCCcccCC-----CCCCce
Q 025946 163 SCPN--CGNDFQIFKSTLNDELQLCP-----YCSQPF 192 (245)
Q Consensus 163 tCPn--CG~eF~~~ed~Ln~d~iqCP-----nCGE~L 192 (245)
-||. |++-..... ....++|| .||..|
T Consensus 27 ~CP~p~C~~~v~~~~---~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 27 LCPRPGCGAGLLPEP---DQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp CCCSSSCCCCCCCCS---CTTSBCTTSSSTTCCSCCE
T ss_pred ECCCCCCCcccEECC---CCCcCCCCCCCCCCCCCee
Confidence 6888 998776532 23568898 888765
No 299
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.88 E-value=8.1 Score=21.50 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=10.2
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2els_A 7 GKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEECCCCCceeC
Confidence 35778999987663
No 300
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=45.82 E-value=8.6 Score=29.84 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=18.4
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||-||+.-.-- ..-+-=.|..||..+
T Consensus 37 y~CpfCgk~~vkR---~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 37 YFCEFCGKFAVKR---KAVGIWGCKDCGKVK 64 (92)
T ss_dssp BCCTTTCSSCBEE---EETTEEECSSSCCEE
T ss_pred ccCcccCCCeeEe---cCcceEEcCCCCCEE
Confidence 3899999874331 111345899999865
No 301
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=45.82 E-value=10 Score=21.15 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.8
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 10 k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 10 KPFQCPDCDRSFS 22 (37)
T ss_dssp SSBCCTTTCCCBS
T ss_pred CCccCCCCCcccC
Confidence 4788999987653
No 302
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=45.78 E-value=4.3 Score=40.25 Aligned_cols=34 Identities=21% Similarity=0.541 Sum_probs=20.6
Q ss_pred cCCCCCceeeecccc-cCCCcccCCCCCCce-eeeC
Q 025946 163 SCPNCGNDFQIFKST-LNDELQLCPYCSQPF-SVVD 196 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln~d~iqCPnCGE~L-~Vd~ 196 (245)
-||.|..|+.+-.|= +.-.|+-||.||=.+ ...+
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l~~l~~ 104 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPYLEWVSH 104 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCCEEEEET
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCccceEeec
Confidence 355555554442111 333689999999998 5543
No 303
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.76 E-value=15 Score=25.84 Aligned_cols=41 Identities=17% Similarity=0.392 Sum_probs=27.0
Q ss_pred ccCCCCCceeeecccc------cCCCcccCCCCCCceeeeCCeeEEecc
Q 025946 162 DSCPNCGNDFQIFKST------LNDELQLCPYCSQPFSVVDDKFVRESV 204 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~Vd~~~F~R~~~ 204 (245)
..|+.|++.++..+-+ ...+=..|..|+++|. +.-|.+++.
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~--~~~~~~~g~ 62 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT--GEYISKDGV 62 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS--SCCEEETTE
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC--CCeEEECCE
Confidence 3799999998753322 2234578999999986 344555543
No 304
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=45.75 E-value=6.6 Score=39.05 Aligned_cols=9 Identities=44% Similarity=1.556 Sum_probs=4.5
Q ss_pred cCCCCCcee
Q 025946 163 SCPNCGNDF 171 (245)
Q Consensus 163 tCPnCG~eF 171 (245)
.||+||.++
T Consensus 405 ~CP~Cgs~l 413 (667)
T 1dgs_A 405 ACPECGHRL 413 (667)
T ss_dssp BCTTTCCBC
T ss_pred CCCCCCCCc
Confidence 455555444
No 305
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=45.74 E-value=8.4 Score=24.31 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=12.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHH
Q 025946 96 GGGGNNSNNARILGNLALAIGL 117 (245)
Q Consensus 96 gg~~~~~~~~r~lgn~l~~l~l 117 (245)
|||+...+--|+--.|.+-+++
T Consensus 4 gggggaashqrvtpdwmlplil 25 (29)
T 1cn3_F 4 GGGGGAASHQRVTPDWMLPLIL 25 (29)
T ss_dssp CCCSTTTCCCCCEEGGGHHHHH
T ss_pred CCCCccccccccCchhhHHHHH
Confidence 3333355567877777655443
No 306
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=45.55 E-value=19 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=34.6
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCceeee-CCeeEEecc
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV-DDKFVRESV 204 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd-~~~F~R~~~ 204 (245)
-++..||.=|..+... .+++.++||+.|..|.++ +|+-...++
T Consensus 98 A~~n~CpH~G~~L~~g---~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa 141 (175)
T 4aay_B 98 GFSTICPHKGFPLSYS---ADNKTFNCPGHFSVFDPEKGGQQVWGQA 141 (175)
T ss_dssp EEECBCTTTCCBCEEE---TTTTEEECTTTCCEEEGGGTTEEEECSC
T ss_pred EEeCCCCCCCCCCccC---CCCCEEEcCCCCCEECCCCCceEecCCC
Confidence 4566999999887642 466789999999999998 888876654
No 307
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=44.28 E-value=8.4 Score=25.98 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.4
Q ss_pred cccCCCCCCceee
Q 025946 182 LQLCPYCSQPFSV 194 (245)
Q Consensus 182 ~iqCPnCGE~L~V 194 (245)
...||.|.+++..
T Consensus 53 ~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 53 KSSCPVCGISYSF 65 (79)
T ss_dssp CCCCSSSCCCCCS
T ss_pred CCcCCCCCCcCCH
Confidence 6789999888764
No 308
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.20 E-value=8.2 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 2elx_A 9 VCALCLKKFVS 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCcchhCC
Confidence 79999988875
No 309
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=44.10 E-value=7.9 Score=30.71 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=18.6
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+||.||++-.-- ..-+-=.|..||..+
T Consensus 37 y~CpfCgk~~vKR---~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 37 YGCPFCGKVAVKR---AAVGIWKCKPCKKII 64 (103)
T ss_dssp EECTTTCCEEEEE---EETTEEEETTTTEEE
T ss_pred CCCCCCCCceeee---cCcceEEcCCCCCEE
Confidence 3899999774431 111345899998765
No 310
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=43.81 E-value=7.2 Score=24.73 Aligned_cols=26 Identities=23% Similarity=0.740 Sum_probs=18.3
Q ss_pred cCCCCCceeeecccccCC--CcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLND--ELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~--d~iqCPnCGE~L~V 194 (245)
.|+.||+.... +.+ .++.| ||++++.
T Consensus 8 ~C~~CGnivev----~~~g~~~l~C--CG~~M~~ 35 (36)
T 1dxg_A 8 KCELCGQVVKV----LEEGGGTLVC--CGEDMVK 35 (36)
T ss_dssp ECTTTCCEEEE----EECCSSCEEE--TTEECEE
T ss_pred EcCCCCcEEEE----EeCCCcCEEe--CCcccCc
Confidence 68888888776 333 46666 8887754
No 311
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=43.69 E-value=8.9 Score=32.60 Aligned_cols=29 Identities=24% Similarity=0.737 Sum_probs=20.0
Q ss_pred ccCCCCCce-eeecccccCCCcccCCCCCCceee
Q 025946 162 DSCPNCGND-FQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~e-F~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
..||+||.. |.. -..+-..|-.||..+.+
T Consensus 114 ~~Cp~Cg~g~fma----~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 114 KGCPKCGPGIFMA----KHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp EECSTTCSSCEEE----ECSSCEEETTTCCCBCC
T ss_pred ccCCccCCCcccc----CccCCCccCCceeEEEe
Confidence 489999876 454 33456688888887743
No 312
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=43.69 E-value=17 Score=28.35 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=21.9
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCceeee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
.||.||..+... ..--..+..|..||+.+.-.
T Consensus 129 ~~~~~g~~y~~~-~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 129 ICSVCGTTYHLV-FNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EETTTCCEEETT-TBCCSSTTBCTTTCCBEECC
T ss_pred cCCccCCccccc-cCCCcccCccccccccccCC
Confidence 899999877652 11111367899999988643
No 313
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.34 E-value=8.2 Score=27.50 Aligned_cols=26 Identities=35% Similarity=0.750 Sum_probs=13.4
Q ss_pred cCCCCCceeeecccc-cCCCcccCCCC
Q 025946 163 SCPNCGNDFQIFKST-LNDELQLCPYC 188 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln~d~iqCPnC 188 (245)
.||+|+..|..+=|+ +.+.--.||.|
T Consensus 32 ~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 32 VCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred ECCccCcCcccchhHHHHhhccCCcCC
Confidence 355555555554444 34445555555
No 314
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.32 E-value=8.7 Score=21.19 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elt_A 11 KCPQCSYASAI 21 (36)
T ss_dssp ECSSSSCEESS
T ss_pred CCCCCCcccCC
Confidence 79999988865
No 315
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=43.25 E-value=20 Score=27.23 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=21.9
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
...||.|+..-..-++-+.. ...|..|+.++
T Consensus 14 ~~~c~~c~~~~~~~~~r~~~-~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPSDRLAA-GPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEGGGTTS-CCBCTTTCCBS
T ss_pred eEECccccccccCCcccccC-CCCCCcCCccc
Confidence 47999999887774443333 44788888876
No 316
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.18 E-value=8.7 Score=21.50 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elp_A 11 KCPYCDFYFMK 21 (37)
T ss_dssp ECSSSSCEECS
T ss_pred ECCCCChhhcc
Confidence 79999988865
No 317
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.61 E-value=13 Score=25.33 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=25.3
Q ss_pred cCCCCCceeeecccccC------CCcccCCCCCCceeeeCCeeEEec
Q 025946 163 SCPNCGNDFQIFKSTLN------DELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln------~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
.|+.|++.++..+-+.. .+=..|..|+++|... .-+.+++
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g 47 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSG-GHAEHEG 47 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTT-TEEEETT
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCC-ceECcCC
Confidence 59999999884333322 2346799999988643 3444444
No 318
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=42.56 E-value=12 Score=29.00 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=12.3
Q ss_pred CcccCCCCCCceeeeC
Q 025946 181 ELQLCPYCSQPFSVVD 196 (245)
Q Consensus 181 d~iqCPnCGE~L~Vd~ 196 (245)
.+.+||.||+.|....
T Consensus 78 ~~~RC~eCG~~fkL~~ 93 (98)
T 1v54_F 78 EAQRCPSCGTHYKLVP 93 (98)
T ss_dssp SCEECTTTCCEEEEEC
T ss_pred CceECCCCCeEEEEee
Confidence 4678999998887654
No 319
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.39 E-value=9.2 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=12.3
Q ss_pred cCcceeccCCCCCceee
Q 025946 156 SRDIVQDSCPNCGNDFQ 172 (245)
Q Consensus 156 ~rnLIE~tCPnCG~eF~ 172 (245)
.||+-+.+|+.|-.+|.
T Consensus 10 ~~~~~~~~C~IC~~~~~ 26 (81)
T 2ecl_A 10 SWDVECDTCAICRVQVM 26 (81)
T ss_dssp CCSCCCSCBTTTTBCTT
T ss_pred eecCCCCCCcccChhhh
Confidence 56777778888877663
No 320
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.38 E-value=8.3 Score=27.95 Aligned_cols=6 Identities=33% Similarity=0.838 Sum_probs=3.6
Q ss_pred cccCCC
Q 025946 182 LQLCPY 187 (245)
Q Consensus 182 ~iqCPn 187 (245)
...||.
T Consensus 48 ~~~CP~ 53 (94)
T 2yu4_A 48 KAYCPQ 53 (94)
T ss_dssp CBCCCS
T ss_pred CCCCCc
Confidence 346666
No 321
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=42.25 E-value=6.9 Score=27.00 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=17.4
Q ss_pred CCcccCCCCCCceeeeCCeeEEecccccc
Q 025946 180 DELQLCPYCSQPFSVVDDKFVRESVRFSN 208 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~~~F~R~~~~f~~ 208 (245)
.....|++||+++.... | +.+.+|=+
T Consensus 16 ~~~~~C~~CG~~i~~~~--~-~r~krFCS 41 (49)
T 2l8e_A 16 ANLLKCEYCGKYAPAEQ--F-RGSKRFCS 41 (49)
T ss_dssp CSEEECTTTCCEEEGGG--C-TTTSSSCS
T ss_pred CCCCcChhccCcccccc--C-CCCCccCC
Confidence 34567999999998754 3 44556654
No 322
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=41.97 E-value=13 Score=27.43 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=6.6
Q ss_pred eccCCCCCceee
Q 025946 161 QDSCPNCGNDFQ 172 (245)
Q Consensus 161 E~tCPnCG~eF~ 172 (245)
...||+||+.+.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 345666665554
No 323
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=41.70 E-value=14 Score=28.37 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=31.1
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEec
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
.+...||.-|..+.. ...+.+.++||+-|..|.+ +|+-...+
T Consensus 67 a~~~~C~H~g~~l~~--g~~~~~~i~CP~Hg~~fd~-~G~~~~~P 108 (129)
T 1rie_A 67 ILIGVCTHLGCVPIA--NAGDFGGYYCPCHGSHYDA-SGRIRKGP 108 (129)
T ss_dssp EEECCCTTTSCCCEE--TCTTTEEEEETTTTEEEET-TCCEEESS
T ss_pred EEECccCCCCeeccc--ccCCCCEEEcCCCCCEEcC-CCCEeeCC
Confidence 345699999988765 2234468999999999999 77765544
No 324
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=41.39 E-value=12 Score=25.37 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=20.7
Q ss_pred eccCCCCCceeee---ccccc-------CCCcccCCCCCCcee
Q 025946 161 QDSCPNCGNDFQI---FKSTL-------NDELQLCPYCSQPFS 193 (245)
Q Consensus 161 E~tCPnCG~eF~~---~ed~L-------n~d~iqCPnCGE~L~ 193 (245)
...|+.|++.++. ....+ ..+=..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC
Confidence 3479999988874 22221 123357888888875
No 325
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=41.07 E-value=12 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=18.5
Q ss_pred ccee--ccCCCCCceeeecccccCCCcccCCCCCCceeee
Q 025946 158 DIVQ--DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 158 nLIE--~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd 195 (245)
++++ +.||.|+.+=+.+.-.=.--...|-.||..=+|+
T Consensus 98 ~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~ 137 (139)
T 3cw2_K 98 RFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVK 137 (139)
T ss_dssp TTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC--------
T ss_pred HHHHHeeECCCCCCcCcEEEEeCCeEEEEecCCCCCCccC
Confidence 4444 5999999886652110001278999999876653
No 326
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.70 E-value=10 Score=21.09 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elq_A 11 KCSLCEYATRS 21 (36)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 79999988865
No 327
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.47 E-value=11 Score=21.38 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elm_A 11 YCSQCHYSSIT 21 (37)
T ss_dssp ECSSSSCEEEC
T ss_pred ECCCCCcccCC
Confidence 69999988875
No 328
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=46.51 E-value=5.9 Score=20.82 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2lvt_A 4 QCVMCGKAFTQ 14 (29)
Confidence 68888887765
No 329
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=40.28 E-value=12 Score=30.95 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=24.1
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCceeeeCC
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~ 197 (245)
+.||.|+.+=+.+.-.=.--...|-.||..-+|+..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~ 140 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHL 140 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC-
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCccccch
Confidence 489999987666211001127899999998877654
No 330
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=40.26 E-value=11 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=13.4
Q ss_pred cCCC-cccCCCCCCceeee
Q 025946 178 LNDE-LQLCPYCSQPFSVV 195 (245)
Q Consensus 178 Ln~d-~iqCPnCGE~L~Vd 195 (245)
|.++ +.+||.||+.|.++
T Consensus 51 l~~g~~~RC~eCG~~fkL~ 69 (80)
T 2odx_A 51 PTVNEVARCWECGSVYKLN 69 (80)
T ss_dssp CCTTCEEECSSSCCEEEEC
T ss_pred ecCCCCeECCCCCeEEEEE
Confidence 5554 66999999988754
No 331
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=40.24 E-value=19 Score=31.01 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=20.4
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCC
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
+--..|+.||..|...-.. ......||.|.
T Consensus 132 L~l~~C~~Cgg~fv~~~~~-~~~~f~Cp~C~ 161 (192)
T 2avu_E 132 LQLSSCNCCGGNFITHAHQ-PVGSFACSLCQ 161 (192)
T ss_dssp EEEEECTTTCCEEEEESSC-CSSCCCCTTC-
T ss_pred eeeCcCCCCCCCeeCccCC-CCCCCcCCCCC
Confidence 3344999999999983221 22478999996
No 332
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=40.16 E-value=3.3 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=20.8
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCceeeeCC
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~ 197 (245)
+.|-.|+.-....+. -...||||+.-|..+++
T Consensus 17 rAC~~C~~V~t~~qF----~~~gCpnC~~~l~m~~~ 48 (120)
T 3h7h_A 17 RACLLCSLVKTIDQF----EYDGCDNCDAYLQMKGN 48 (120)
T ss_dssp EEETTTCBEEEHHHH----HHHCCTTTHHHHCCTTC
T ss_pred eeeccCCceechhhc----cCCCCCCCcchhhccCC
Confidence 589999965543100 02479999987776654
No 333
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.10 E-value=14 Score=20.31 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=10.2
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 35778999987653
No 334
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.87 E-value=10 Score=21.02 Aligned_cols=11 Identities=27% Similarity=0.766 Sum_probs=9.2
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elv_A 11 DCHICERKFKN 21 (36)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCccCC
Confidence 79999988875
No 335
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=39.67 E-value=11 Score=20.76 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 1srk_A 9 VCRICLSAFTT 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCCCcccCC
Confidence 69999988875
No 336
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=39.49 E-value=9.5 Score=21.30 Aligned_cols=11 Identities=36% Similarity=1.062 Sum_probs=8.3
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~F~~ 14 (33)
T 1rim_A 4 ACPECPKRFMR 14 (33)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCCCCchhCC
Confidence 68888887765
No 337
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=39.48 E-value=14 Score=27.03 Aligned_cols=28 Identities=29% Similarity=0.705 Sum_probs=18.0
Q ss_pred CCceeee--cccccCCCcccCCCCCCceee
Q 025946 167 CGNDFQI--FKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 167 CG~eF~~--~ed~Ln~d~iqCPnCGE~L~V 194 (245)
||..|.. .+..+..+...||.|.+++..
T Consensus 33 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 33 CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4444432 234455567899999998864
No 338
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=45.58 E-value=6.2 Score=20.60 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=8.5
Q ss_pred cccCCCCCCcee
Q 025946 182 LQLCPYCSQPFS 193 (245)
Q Consensus 182 ~iqCPnCGE~L~ 193 (245)
+..|+.||..+.
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 567888877654
No 339
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.25 E-value=12 Score=27.66 Aligned_cols=25 Identities=20% Similarity=0.630 Sum_probs=16.7
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
..|+.|+.+|.. + .-.-.|.+||+.
T Consensus 10 ~~C~~C~~~F~~----~-~RrHHCR~CG~v 34 (88)
T 1wfk_A 10 SRCYGCAVKFTL----F-KKEYGCKNCGRA 34 (88)
T ss_dssp SBCTTTCCBCCS----S-SCEEECSSSCCE
T ss_pred CCCcCcCCcccC----c-cccccCCCCCCE
Confidence 479999999986 3 334455555553
No 340
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.08 E-value=14 Score=26.28 Aligned_cols=45 Identities=13% Similarity=0.340 Sum_probs=27.5
Q ss_pred eeccCCCCCceeeecccccC-------CCcccCCCCCCceeeeCCeeEEeccc
Q 025946 160 VQDSCPNCGNDFQIFKSTLN-------DELQLCPYCSQPFSVVDDKFVRESVR 205 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln-------~d~iqCPnCGE~L~Vd~~~F~R~~~~ 205 (245)
....|+.|++.++.++.++. .+=..|-.|+++|. ++.-+.+++.-
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~ 55 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA-NETFVAKDNKI 55 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTT-SSCCEEETTEE
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCC-cCeeECcCCEE
Confidence 34689999999874222222 23467999999983 22234555443
No 341
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=38.74 E-value=18 Score=24.06 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred ccCCCCCceeeeccccc-------C--CCcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQIFKSTL-------N--DELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~L-------n--~d~iqCPnCGE~L~ 193 (245)
..|+.|++.++..+..+ . .+=-.|-.|+++|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC
Confidence 47999999988521221 2 44568899999884
No 342
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=38.16 E-value=8.2 Score=21.35 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=8.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 4 ~C~~C~k~f~~ 14 (32)
T 2kfq_A 4 ACPACPKRFMR 14 (32)
T ss_dssp SSSSSCTTHHH
T ss_pred CCCCCCcccCC
Confidence 68888888776
No 343
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=38.04 E-value=13 Score=30.33 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=12.2
Q ss_pred CcccCCCCCCceeeeC
Q 025946 181 ELQLCPYCSQPFSVVD 196 (245)
Q Consensus 181 d~iqCPnCGE~L~Vd~ 196 (245)
.+.+||.||+.|..+.
T Consensus 109 ~p~RCpeCG~~fkL~~ 124 (129)
T 2y69_F 109 EAQRCPSCGTHYKLVP 124 (129)
T ss_dssp SCEECTTTCCEEEEEE
T ss_pred CceeCCCCCeEEEEee
Confidence 4678999988887664
No 344
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=37.59 E-value=3.9 Score=28.51 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=21.0
Q ss_pred eeccCCCCCceeee-----------cccccCC-CcccCCCCCC
Q 025946 160 VQDSCPNCGNDFQI-----------FKSTLND-ELQLCPYCSQ 190 (245)
Q Consensus 160 IE~tCPnCG~eF~~-----------~ed~Ln~-d~iqCPnCGE 190 (245)
+...|..|+..... +++.|-+ =.++||.|-+
T Consensus 7 I~t~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 7 VVASCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp EEEECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred EEEECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 55689999986543 3344333 3899999964
No 345
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.59 E-value=14 Score=30.55 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=15.6
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+..|-.|+++... ...||+||.++
T Consensus 57 ~~vlCg~C~~~q~~--------~~~C~~Cg~~f 81 (143)
T 2dkt_A 57 KEVQCINCEKLQHA--------QQTCEDCSTLF 81 (143)
T ss_dssp CCEEESSSCCEECS--------CSBCSSSCCBS
T ss_pred ceeeecccCccccc--------cCcCCCCCccc
Confidence 34567777766655 23677777654
No 346
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=37.46 E-value=13 Score=36.87 Aligned_cols=10 Identities=50% Similarity=1.404 Sum_probs=5.0
Q ss_pred cCCCCCceee
Q 025946 163 SCPNCGNDFQ 172 (245)
Q Consensus 163 tCPnCG~eF~ 172 (245)
.||+||.+..
T Consensus 407 ~CP~Cgs~l~ 416 (671)
T 2owo_A 407 HCPVCGSDVE 416 (671)
T ss_dssp BCTTTCCBEE
T ss_pred CCCCCCCEeE
Confidence 4555555444
No 347
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=37.18 E-value=27 Score=27.33 Aligned_cols=40 Identities=15% Similarity=0.397 Sum_probs=31.0
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
++..||.-|..+...+ .++.++||+-|..|.. +|+-...+
T Consensus 63 ~~n~CpH~g~~L~~g~---~~~~i~CP~Hg~~Fd~-tG~~~~~P 102 (139)
T 1rfs_A 63 INAVCTHLGCVVPFNA---AENKFICPCHGSQYNN-QGRVVRGP 102 (139)
T ss_dssp EECBCTTTCCBCCEET---TTTEEECTTTCCEEET-TCCEEESS
T ss_pred EeCcCCCCCCCCccCC---CCCEEEcCCCCCEECC-CCCCccCC
Confidence 5779999998876522 3578999999999995 77766554
No 348
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=37.17 E-value=9.9 Score=34.28 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=19.6
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.|.-||++-.. .-..||+||+.
T Consensus 210 ~Cs~C~t~W~~-------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 210 SCSLCACEWHY-------VRIKCSHCEES 231 (309)
T ss_dssp EETTTCCEEEC-------CTTSCSSSCCC
T ss_pred EeCCCCCEEee-------cCcCCcCCCCC
Confidence 89999998877 68899999996
No 349
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=37.11 E-value=11 Score=29.28 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=23.1
Q ss_pred eccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeE
Q 025946 161 QDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFV 200 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~ 200 (245)
+..-..||.++.. ...|.+||+++..++=.+.
T Consensus 113 ~~~~~~~g~~~~~--------~~~~~~~g~~~~~~~~~~~ 144 (146)
T 2f2e_A 113 RLVERDSGQPVPR--------LQVRAGDGSPLAAEDTRVS 144 (146)
T ss_dssp EEEETTTCCBCCC--------CCCBCTTSCBCCGGGEEEE
T ss_pred eeeeCCCCCCCCc--------eEEECCCcCCCCHHHeeee
Confidence 3456678877664 7899999999976654443
No 350
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=37.00 E-value=16 Score=30.37 Aligned_cols=31 Identities=13% Similarity=0.435 Sum_probs=17.9
Q ss_pred cCCCCCceeeecccc-cC--C----CcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKST-LN--D----ELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln--~----d~iqCPnCGE~L~ 193 (245)
.||.||..-..+-.. .. + .-.+|.+||..+.
T Consensus 139 ~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 139 TCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp CCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 799998765442111 00 1 1456888887664
No 351
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=36.74 E-value=13 Score=30.58 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.4
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
+.||.||..+.. ...||.||+.+.
T Consensus 125 ~~~~~~g~~y~~--------~~~pp~~g~~l~ 148 (206)
T 3sr0_A 125 RINPETGEVYHV--------KYNPPPPGVKVI 148 (206)
T ss_dssp EECTTTCCEEET--------TTBCCCTTCCCB
T ss_pred ccccCCCceeee--------eccCCCCCceec
Confidence 489999977665 556889998764
No 352
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=36.72 E-value=8.6 Score=37.24 Aligned_cols=26 Identities=38% Similarity=0.815 Sum_probs=18.5
Q ss_pred cCCCCCceeeecccc----cCCCcccCCCCC
Q 025946 163 SCPNCGNDFQIFKST----LNDELQLCPYCS 189 (245)
Q Consensus 163 tCPnCG~eF~~~ed~----Ln~d~iqCPnCG 189 (245)
.|..|++++.. +.. .+...-.||.||
T Consensus 301 ~C~~Cg~~~~~-e~i~~~i~~~~~P~Cp~Cg 330 (492)
T 4iao_A 301 TCVTCHWNLPG-ERIFNKIRNLELPLCPYCY 330 (492)
T ss_dssp EETTTCCEEEG-GGGHHHHHTTCCCBCTTTH
T ss_pred ecCCCCCcCCH-HHHHHHHhccCCCCCcccc
Confidence 89999987654 222 234567899998
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=36.21 E-value=21 Score=29.24 Aligned_cols=31 Identities=6% Similarity=-0.104 Sum_probs=21.0
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
+||.||..+-. +..--..+..|..||+++.-
T Consensus 158 ~~~~~g~~y~~-~~~pp~~~~~~~~~~~~l~~ 188 (243)
T 3tlx_A 158 IHKPSGRIYHK-IFNPPKVPFRDDVTNEPLIQ 188 (243)
T ss_dssp EETTTTEEEET-TTBCCSSTTBCTTTCCBCBC
T ss_pred CCcccCccccc-ccCCCcccCccccccccccC
Confidence 79999977655 21112236789999998753
No 354
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.85 E-value=8.6 Score=21.44 Aligned_cols=11 Identities=45% Similarity=1.077 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elo_A 11 SCPVCEKSFSE 21 (37)
T ss_dssp EETTTTEECSS
T ss_pred CCCCCCCccCC
Confidence 79999988765
No 355
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=35.60 E-value=11 Score=34.59 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=4.1
Q ss_pred cCCCCCceeeec--ccc-cCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIF--KST-LNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~--ed~-Ln~d~iqCPnCGE~L~ 193 (245)
.||+||.+-... .+. -++....||.||..++
T Consensus 334 r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~ 367 (437)
T 1dt9_A 334 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHE 367 (437)
T ss_dssp ---------CCCBCTTCSSCCCCCC---------
T ss_pred EcCCCCceeeeeeccccccccccccCcccCcccc
Confidence 699999764321 000 1223578999999776
No 356
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=35.44 E-value=9.6 Score=34.44 Aligned_cols=27 Identities=37% Similarity=0.855 Sum_probs=17.8
Q ss_pred cCCCCCceeeeccccc----CCCcccCCCCCC
Q 025946 163 SCPNCGNDFQIFKSTL----NDELQLCPYCSQ 190 (245)
Q Consensus 163 tCPnCG~eF~~~ed~L----n~d~iqCPnCGE 190 (245)
.|..|++++.. +... +...-.||.||+
T Consensus 163 ~C~~C~~~~~~-~~~~~~~~~~~~P~Cp~C~~ 193 (354)
T 2hjh_A 163 TCVTCHWNLPG-ERIFNKIRNLELPLCPYCYK 193 (354)
T ss_dssp EETTTCCEEEG-GGGHHHHHTTCCCBCTTTHH
T ss_pred ccCCCCCcCCH-HHHHHHhhccCCCcCccccc
Confidence 89999976543 2221 224668999984
No 357
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=35.24 E-value=13 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 8 ~C~~C~k~f~~ 18 (39)
T 1njq_A 8 TCSFCKREFRS 18 (39)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCcccCC
Confidence 69999988865
No 358
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=23 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=22.4
Q ss_pred eccCCCCCceeeecccccC-------CCcccCCCCCCceee
Q 025946 161 QDSCPNCGNDFQIFKSTLN-------DELQLCPYCSQPFSV 194 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~Ln-------~d~iqCPnCGE~L~V 194 (245)
...|+.|++.++..+.++. .+=..|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCC
Confidence 3489999998885333222 123578888888753
No 359
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.67 E-value=13 Score=29.54 Aligned_cols=28 Identities=32% Similarity=0.768 Sum_probs=19.9
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.+..|..|+.+|.. -.-.-.|.+||..+
T Consensus 18 ~~~~C~~C~~~Fs~-----~~RkHHCR~CG~if 45 (120)
T 1y02_A 18 LEPSCKSCGAHFAN-----TARKQTCLDCKKNF 45 (120)
T ss_dssp --CCCTTTCCCCSS-----GGGCEECTTTCCEE
T ss_pred ccCcccCcCCcccc-----ccccccCCCCCCee
Confidence 34589999999876 23466788888764
No 360
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=34.63 E-value=15 Score=36.47 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=14.4
Q ss_pred cccCCCCCCceeeeCCeeEE
Q 025946 182 LQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 182 ~iqCPnCGE~L~Vd~~~F~R 201 (245)
|..||.||+++ .+++...|
T Consensus 403 P~~CP~Cgs~l-~~g~~~~~ 421 (667)
T 1dgs_A 403 PEACPECGHRL-VKEGKVHR 421 (667)
T ss_dssp CSBCTTTCCBC-EEETTEEE
T ss_pred CCCCCCCCCCc-cCCCeEEE
Confidence 88999999999 55544443
No 361
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.32 E-value=8.4 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=0.0
Q ss_pred HhcCcceeccCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 154 WASRDIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 154 Wl~rnLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
|+.+. -...|+.|+.+|.. + .-.-.|.+||..+
T Consensus 369 w~~~~-~~~~c~~c~~~f~~----~-~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 369 LVPVT-HVMMCMNCGCDFSL----T-LRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------------------
T ss_pred CCCcc-cCCcCCCcCCCCCC----c-chhhhcccCcCEe
Confidence 65443 33589999999876 2 2356777777644
No 362
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.73 E-value=17 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.747 Sum_probs=18.7
Q ss_pred ccCCCCCceeeecccccCC--CcccCCC--CCCce
Q 025946 162 DSCPNCGNDFQIFKSTLND--ELQLCPY--CSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~--d~iqCPn--CGE~L 192 (245)
..||.|+..+.- ++ ..+.|++ |+..+
T Consensus 7 k~CP~C~~~Iek-----~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 7 KECPKCHVTIEK-----DGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCTTTCCCCSS-----CCSCCSSSCCSSGGGSCC
T ss_pred eECcCCCCeeEe-----CCCCCcEEECCCCcCCEE
Confidence 589999977654 33 4888988 86544
No 363
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.67 E-value=15 Score=21.60 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=9.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (44)
T 2epv_A 14 ECNECGKAFIW 24 (44)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCcccCc
Confidence 79999998876
No 364
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=33.02 E-value=17 Score=35.60 Aligned_cols=10 Identities=50% Similarity=1.404 Sum_probs=4.9
Q ss_pred cCCCCCceee
Q 025946 163 SCPNCGNDFQ 172 (245)
Q Consensus 163 tCPnCG~eF~ 172 (245)
.||.||.+..
T Consensus 407 ~CP~Cgs~~~ 416 (586)
T 4glx_A 407 HCPVCGSDVE 416 (586)
T ss_dssp BCTTTCCBEE
T ss_pred cCCCCCCchh
Confidence 4555554443
No 365
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=32.63 E-value=22 Score=36.93 Aligned_cols=34 Identities=26% Similarity=0.640 Sum_probs=23.6
Q ss_pred cCCCCCceeeecc---cccCCCcccCCCCC---CceeeeC
Q 025946 163 SCPNCGNDFQIFK---STLNDELQLCPYCS---QPFSVVD 196 (245)
Q Consensus 163 tCPnCG~eF~~~e---d~Ln~d~iqCPnCG---E~L~Vd~ 196 (245)
.||.||..|...+ ..+|...--||.|. ....+|.
T Consensus 269 ~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~~d~ 308 (972)
T 2r6f_A 269 ACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDL 308 (972)
T ss_dssp ECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEEECH
T ss_pred cCCCCCCcCCCCChhhcCcCCCCCCCCCCcCccceEeeCH
Confidence 8999999875422 33677788999995 3444443
No 366
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=32.55 E-value=18 Score=35.96 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=13.3
Q ss_pred cccCCCCCCceeeeCC
Q 025946 182 LQLCPYCSQPFSVVDD 197 (245)
Q Consensus 182 ~iqCPnCGE~L~Vd~~ 197 (245)
|..||.||+++...++
T Consensus 405 P~~CP~Cgs~l~~~~~ 420 (671)
T 2owo_A 405 PTHCPVCGSDVERVEG 420 (671)
T ss_dssp CSBCTTTCCBEEECTT
T ss_pred CCCCCCCCCEeEEecC
Confidence 8899999999976544
No 367
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.53 E-value=3.4 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.629 Sum_probs=18.3
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
....||.|+..|...+.+ . --.|.-|++.+.
T Consensus 11 ~~~~CPrCn~~f~~~~sL-r--~HmkycCp~~v~ 41 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEAL-R--GHMCYCCPEMVE 41 (49)
T ss_dssp SCCCCTTTCCCCSSHHHH-H--HHHHHHCTTTCC
T ss_pred CceeCCcccccccchHHH-H--hhhhhcCcchhh
Confidence 445899998888764333 1 223455666554
No 368
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=32.47 E-value=16 Score=20.86 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=9.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 13 ~C~~C~k~f~~ 23 (42)
T 2epc_A 13 LCGQCGKSFTQ 23 (42)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCcccCC
Confidence 79999998876
No 369
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.42 E-value=35 Score=22.57 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=22.5
Q ss_pred eeccCCCCCceeeecccc------cCCCcccCCCCCCcee
Q 025946 160 VQDSCPNCGNDFQIFKST------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~ 193 (245)
....|+.|++.++. +.+ ...+=..|..|+.+|.
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCT
T ss_pred CcCCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCC
Confidence 34589999998874 222 2223467999999986
No 370
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=32.23 E-value=13 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=20.7
Q ss_pred ccCCCCCceeeecccccCC-CcccCCCCCCceeee
Q 025946 162 DSCPNCGNDFQIFKSTLND-ELQLCPYCSQPFSVV 195 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~-d~iqCPnCGE~L~Vd 195 (245)
+.||.|+.+=+.+.-. ++ -...|-.||..-+++
T Consensus 1 VlC~~C~~peT~l~~~-~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 1 VICRECGKPDTKIIKE-GRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCCSSSCSCEEEEEEE-TTEEEEEEETTTEEEEEC
T ss_pred CCCcCCCCCCcEEEEe-CCcEEEEhhcCCCccccc
Confidence 3699999876663211 11 266788888876653
No 371
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.93 E-value=16 Score=20.86 Aligned_cols=11 Identities=36% Similarity=1.162 Sum_probs=9.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 12 ~C~~C~k~f~~ 22 (41)
T 2ept_A 12 ECQECGKSFRQ 22 (41)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCCcCC
Confidence 79999998876
No 372
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=31.91 E-value=23 Score=28.52 Aligned_cols=28 Identities=29% Similarity=0.739 Sum_probs=18.9
Q ss_pred cCCC--CCce-eeecccccCCCcccCCCCCCceee
Q 025946 163 SCPN--CGND-FQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPn--CG~e-F~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.||+ ||.- |.. -..+-..|-.||..+..
T Consensus 120 ~c~~~~cg~g~fma----~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 120 ECSNPTCGAGVFLA----NHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp BCCSTTSCSSSBEE----ECSSCEEESSSSSCCEE
T ss_pred cCCCccCCCceEec----ccCCCcccCCCceEEEe
Confidence 7888 8864 444 34467778888877654
No 373
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.68 E-value=17 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2yu5_A 14 KCSKCDRVFTQ 24 (44)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCchhCC
Confidence 79999999886
No 374
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=31.58 E-value=16 Score=22.59 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=9.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 26 ~C~~C~k~f~~ 36 (54)
T 1yui_A 26 TCPICYAVIRQ 36 (54)
T ss_dssp ECTTTCCEESS
T ss_pred cCCCCCcccCC
Confidence 79999998875
No 375
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.58 E-value=19 Score=33.13 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=11.9
Q ss_pred CCcccCCCCCCceeee
Q 025946 180 DELQLCPYCSQPFSVV 195 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd 195 (245)
...+.||+||..+..+
T Consensus 285 ~~~v~Cp~cgA~y~~~ 300 (325)
T 3mv2_A 285 TPSVSDPLTGSKYVIT 300 (325)
T ss_dssp SCEEECTTTCCEEEGG
T ss_pred CCCccCCCCCCeechh
Confidence 3678888888877654
No 376
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=31.40 E-value=15 Score=36.06 Aligned_cols=9 Identities=44% Similarity=1.302 Sum_probs=4.5
Q ss_pred eccCCCCCc
Q 025946 161 QDSCPNCGN 169 (245)
Q Consensus 161 E~tCPnCG~ 169 (245)
+.+||.||.
T Consensus 140 ~gtcP~c~~ 148 (722)
T 1rqg_A 140 IGTCPYCGA 148 (722)
T ss_dssp CSBCSSSCC
T ss_pred ccccCccCC
Confidence 334555554
No 377
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=31.31 E-value=21 Score=31.76 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=21.0
Q ss_pred eccCCCCCceeeeccccc---CCC----cccCCCCCCceee
Q 025946 161 QDSCPNCGNDFQIFKSTL---NDE----LQLCPYCSQPFSV 194 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~L---n~d----~iqCPnCGE~L~V 194 (245)
+.+||.||..=..+-+.= .++ -..|.+||..+.+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 348999997655432221 112 3689999987643
No 378
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=31.26 E-value=21 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.617 Sum_probs=20.9
Q ss_pred ccCCC--CCceeeecccc-------cCCCcccCCC--CCCcee
Q 025946 162 DSCPN--CGNDFQIFKST-------LNDELQLCPY--CSQPFS 193 (245)
Q Consensus 162 ~tCPn--CG~eF~~~ed~-------Ln~d~iqCPn--CGE~L~ 193 (245)
-.|+. |++.|....++ ..+.+..|+. |+..+.
T Consensus 18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~ 60 (72)
T 2epa_A 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60 (72)
T ss_dssp EECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEES
T ss_pred eeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccC
Confidence 37877 99998753222 1235789965 987653
No 379
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.21 E-value=25 Score=26.38 Aligned_cols=32 Identities=28% Similarity=0.664 Sum_probs=22.3
Q ss_pred cCCCCCceeeecccccCC-------CcccCCCCCCceee
Q 025946 163 SCPNCGNDFQIFKSTLND-------ELQLCPYCSQPFSV 194 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~-------d~iqCPnCGE~L~V 194 (245)
.|+.|++.++..+.++.- +=-.|-.|+++|..
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~ 48 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSV 48 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCT
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCC
Confidence 799999999864433222 34578889888843
No 380
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=31.01 E-value=17 Score=20.77 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=9.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 12 ~C~~C~k~f~~ 22 (42)
T 2el5_A 12 ECSECGKAFNR 22 (42)
T ss_dssp ECSSSCCEESS
T ss_pred cCCCcChhhCC
Confidence 79999998876
No 381
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=30.94 E-value=17 Score=21.37 Aligned_cols=11 Identities=45% Similarity=1.316 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emj_A 14 ECAECGKSFSI 24 (46)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCcccCC
Confidence 79999999876
No 382
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.92 E-value=16 Score=23.09 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=7.7
Q ss_pred cccCCCCCCcee
Q 025946 182 LQLCPYCSQPFS 193 (245)
Q Consensus 182 ~iqCPnCGE~L~ 193 (245)
.+|||.|.+..+
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 457777766554
No 383
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.83 E-value=23 Score=23.11 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=12.3
Q ss_pred CCcccCCCCCCceeeeCC
Q 025946 180 DELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 180 ~d~iqCPnCGE~L~Vd~~ 197 (245)
+....||.|.+++..+++
T Consensus 35 ~~~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 35 ASGMQCPICQAPWPLGAD 52 (56)
T ss_dssp SSSSSCSSCCSSSSCCSS
T ss_pred cCCCCCCcCCcEeecCCc
Confidence 346678888887766554
No 384
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=30.79 E-value=27 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=16.6
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
.|-.|=+...+ -+-..||.||..
T Consensus 17 rC~aCf~~t~~------~~k~FCp~CGn~ 39 (79)
T 2con_A 17 RCHGCFKTTSD------MNRVFCGHCGNK 39 (79)
T ss_dssp ECSSSCCEESC------SSCCSCSSSCCS
T ss_pred EecccceECCC------cccccccccCcc
Confidence 68888755332 268899999973
No 385
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.65 E-value=18 Score=21.35 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eoy_A 14 KCNKCEKTFSC 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECcCCCCcCCC
Confidence 79999999876
No 386
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=30.57 E-value=19 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=13.4
Q ss_pred cccCCCCCCceeeeCC
Q 025946 182 LQLCPYCSQPFSVVDD 197 (245)
Q Consensus 182 ~iqCPnCGE~L~Vd~~ 197 (245)
|..||.||+++...++
T Consensus 405 P~~CP~Cgs~~~~~~~ 420 (586)
T 4glx_A 405 PTHCPVCGSDVERVEG 420 (586)
T ss_dssp CSBCTTTCCBEECCTT
T ss_pred CCcCCCCCCchhhhhc
Confidence 7899999999986554
No 387
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.50 E-value=17 Score=20.77 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=9.4
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 13 ~C~~C~k~f~~ 23 (42)
T 2en2_A 13 KCETCGARFVQ 23 (42)
T ss_dssp ECTTTCCEESS
T ss_pred eCCCcChhhCC
Confidence 79999998876
No 388
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.37 E-value=18 Score=21.14 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=9.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yts_A 14 ICNECGKSFIQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCChhhCC
Confidence 79999999876
No 389
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.34 E-value=18 Score=21.22 Aligned_cols=11 Identities=36% Similarity=1.054 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emi_A 14 ECSECGKAFIQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCC
Confidence 79999999876
No 390
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.34 E-value=18 Score=33.10 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=16.9
Q ss_pred CCCceeeecccccC--CCcccCCCCCCceeee
Q 025946 166 NCGNDFQIFKSTLN--DELQLCPYCSQPFSVV 195 (245)
Q Consensus 166 nCG~eF~~~ed~Ln--~d~iqCPnCGE~L~Vd 195 (245)
.|..+++- +. ...+.||+||..+..+
T Consensus 264 iCa~s~tP----IY~g~~~v~Cp~cgA~y~~~ 291 (320)
T 3mkr_B 264 ICAASYRP----IYRGKPVEKCPLSGACYSPE 291 (320)
T ss_dssp BBTTTCCB----CCTTSCCEECTTTCCEECGG
T ss_pred eecCCCcc----ccCCCCCccCCCCCCeechh
Confidence 35555554 33 3578899998887654
No 391
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.02 E-value=18 Score=21.14 Aligned_cols=11 Identities=36% Similarity=1.147 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eow_A 14 KCNECGKAFRA 24 (46)
T ss_dssp ECTTSCCEESS
T ss_pred eccccCChhcC
Confidence 79999999876
No 392
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=29.96 E-value=17 Score=37.31 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=19.6
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
++...||+||....+. . +. ....|..|+..
T Consensus 6 ~~~~~C~~Cg~~~~~~-~-l~-~~l~c~~C~~~ 35 (1104)
T 4ddu_A 6 KYHHSCINCGGLNTDE-R-NE-RGLPCEVCLPE 35 (1104)
T ss_dssp EETTCCTTTSSCEEHH-H-HT-TTCCCTTTCCC
T ss_pred HhhhcCCCCcCcCchh-H-Hh-cCCCCcccCCc
Confidence 3556999999876641 1 11 34668888764
No 393
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.88 E-value=18 Score=21.01 Aligned_cols=11 Identities=27% Similarity=1.017 Sum_probs=9.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2emb_A 14 ECSKCQATFNL 24 (44)
T ss_dssp ECTTTCCEESC
T ss_pred ECCCCCCccCC
Confidence 79999999876
No 394
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.60 E-value=19 Score=21.04 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=9.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yrj_A 14 RCGECGKAFAQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCccCC
Confidence 79999999886
No 395
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.48 E-value=18 Score=20.78 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2eof_A 14 ECNECQKAFNT 24 (44)
T ss_dssp ECTTTCCEESC
T ss_pred ECCCCCcccCC
Confidence 79999999876
No 396
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.40 E-value=26 Score=19.89 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=10.4
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2ytb_A 9 EKPYRCDQCGKAFS 22 (42)
T ss_dssp CCSBCCTTTTCCBS
T ss_pred CCCeeCCCccchhC
Confidence 35788999987654
No 397
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=35.50 E-value=11 Score=29.78 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=29.6
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEec
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
++..||.-|..+..-+ .++.++||+.|..|. .+|+-...+
T Consensus 57 ~~n~CpH~g~~L~~g~---~~~~i~CP~Hg~~Fd-~tG~~~~~P 96 (133)
T 3azc_A 57 LNAVCTHLGCVVPWNV---SENKFICPCHGSQYD-STGKVVRGP 96 (133)
Confidence 4569999998876422 356899999999998 666655544
No 398
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=29.13 E-value=16 Score=28.87 Aligned_cols=25 Identities=36% Similarity=0.853 Sum_probs=17.6
Q ss_pred cCCCCCceeeecccccCCC--cccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTLNDE--LQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d--~iqCPnCGE~L~ 193 (245)
.|+.||+-+.. +.++ +..| ||++++
T Consensus 9 kC~~CGnivev----~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 9 KCEVCGNIVEV----LNGGIGELVC--CNQDMK 35 (126)
T ss_dssp ECTTTCCEEEE----EECCSSCEEE--TTEECE
T ss_pred EcCCCCeEEEE----EcCCCcceec--CCcccc
Confidence 79999998876 3443 5556 887554
No 399
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.08 E-value=19 Score=21.06 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2en3_A 14 QCKECGMNFSW 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCcccChhhCC
Confidence 79999999876
No 400
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.02 E-value=32 Score=24.01 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=22.3
Q ss_pred ccCCCCCceeeecccccCC------CcccCCCCCCcee
Q 025946 162 DSCPNCGNDFQIFKSTLND------ELQLCPYCSQPFS 193 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~------d~iqCPnCGE~L~ 193 (245)
..|+.|++.++..|-+... +=..|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~ 53 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLW 53 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCC
T ss_pred CCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcC
Confidence 3799999999864433222 2367889998874
No 401
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.91 E-value=20 Score=21.13 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=9.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2ytp_A 14 ECSECGKAFAR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCcccCC
Confidence 79999999876
No 402
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.88 E-value=23 Score=29.54 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=24.8
Q ss_pred ccCCCCCceeeecccccCC--CcccCCCCCCceeeeCC
Q 025946 162 DSCPNCGNDFQIFKSTLND--ELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~--d~iqCPnCGE~L~Vd~~ 197 (245)
+.||.|+..=+.+.-.=++ -...|-.||..-+|+..
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~ 141 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 141 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccch
Confidence 4899999886652110011 27889999999988864
No 403
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.68 E-value=20 Score=21.10 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em4_A 14 ECIECGKAFKT 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCCccCC
Confidence 79999999886
No 404
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=28.65 E-value=28 Score=23.66 Aligned_cols=30 Identities=30% Similarity=0.669 Sum_probs=15.4
Q ss_pred CCCCceeee--cccccCC-CcccCCCCCCceee
Q 025946 165 PNCGNDFQI--FKSTLND-ELQLCPYCSQPFSV 194 (245)
Q Consensus 165 PnCG~eF~~--~ed~Ln~-d~iqCPnCGE~L~V 194 (245)
|.||..|.. .+..+.. +...||.|.+++..
T Consensus 32 ~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 32 PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 445655543 2222322 34678888776443
No 405
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.59 E-value=19 Score=21.13 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=10.3
Q ss_pred cCCCCCceeeec
Q 025946 163 SCPNCGNDFQIF 174 (245)
Q Consensus 163 tCPnCG~eF~~~ 174 (245)
.|+.||+.|...
T Consensus 14 ~C~~C~k~f~~~ 25 (46)
T 2ep3_A 14 RCAECGKAFTDR 25 (46)
T ss_dssp ECSSSCCEESSH
T ss_pred ECCCCCchhCCH
Confidence 799999999873
No 406
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.56 E-value=36 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=24.6
Q ss_pred ccCCCCCceeeeccccc-------CCCcccCCCCCCceeeeCCeeEEe
Q 025946 162 DSCPNCGNDFQIFKSTL-------NDELQLCPYCSQPFSVVDDKFVRE 202 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~L-------n~d~iqCPnCGE~L~Vd~~~F~R~ 202 (245)
..|+.|++.+++ + .+ ..+=..|..|+++|. +..|..+
T Consensus 16 ~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~ 59 (81)
T 2dlo_A 16 EKCATCSQPILD-R-ILRAMGKAYHPGCFTCVVCHRGLD--GIPFTVD 59 (81)
T ss_dssp CBCTTTCCBCCS-C-CEEETTEEECTTTCBCSSSCCBCT--TSCEECC
T ss_pred CccccCCCeecc-e-eEEECCccccHHhcCcccCCCccC--CCeeEEC
Confidence 489999998874 2 22 223467899998885 5566653
No 407
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.45 E-value=27 Score=19.82 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=10.2
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2yte_A 8 EKPYSCAECKETFS 21 (42)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCeECCCCCCccC
Confidence 35788999987653
No 408
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.45 E-value=19 Score=21.28 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=10.2
Q ss_pred cCCCCCceeeec
Q 025946 163 SCPNCGNDFQIF 174 (245)
Q Consensus 163 tCPnCG~eF~~~ 174 (245)
.|+.|++.|...
T Consensus 14 ~C~~C~k~f~~~ 25 (46)
T 2eon_A 14 KCQVCGKAFRVS 25 (46)
T ss_dssp BCSSSCCBCSSH
T ss_pred CCCCCCcccCcH
Confidence 799999998873
No 409
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.42 E-value=20 Score=21.07 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yto_A 14 KCSDCGKAFTR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECcccCCccCC
Confidence 79999999876
No 410
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=28.42 E-value=16 Score=28.65 Aligned_cols=40 Identities=10% Similarity=0.363 Sum_probs=29.6
Q ss_pred eeccCCCCCceeeecccccC---C-CcccCCCCCCceeeeCCeeEE
Q 025946 160 VQDSCPNCGNDFQIFKSTLN---D-ELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln---~-d~iqCPnCGE~L~Vd~~~F~R 201 (245)
++..||.-|..+.. ..+. . +.++||+-|-.|.+++|+-..
T Consensus 53 ~~n~CpH~g~~L~~--G~~~~~~g~~~i~CP~Hgw~Fdl~tG~~~~ 96 (157)
T 3d89_A 53 MDIRCYHSGGPLHL--GEIEDFNGQSCIVCPWHKYKITLATGEGLY 96 (157)
T ss_dssp EESBCTTTCCBGGG--SEEEEETTEEEEECTTTCCEEETTTCEEEE
T ss_pred EeCCCCCCCCCCcC--CEecCcCCCCEEECCCCCCEEecCCcCEEE
Confidence 45599999987753 1122 1 579999999999998888664
No 411
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=28.41 E-value=16 Score=27.24 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=11.8
Q ss_pred CCCcccCCCCCCceee
Q 025946 179 NDELQLCPYCSQPFSV 194 (245)
Q Consensus 179 n~d~iqCPnCGE~L~V 194 (245)
......||.|.+++..
T Consensus 84 ~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 84 RAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTTCCBCTTTCCBCCT
T ss_pred hHCcCCCCCCCccCCC
Confidence 3445699999998854
No 412
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.31 E-value=22 Score=25.13 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=26.1
Q ss_pred ccCCCCCceeeecccccCC------CcccCCCCCCceeeeCCeeEEec
Q 025946 162 DSCPNCGNDFQIFKSTLND------ELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~------d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
..|+.|++.++..|-+... +=..|-.|+++|... .-|.+++
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g 62 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLG-TYASLHG 62 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTT-TCCCSSS
T ss_pred CcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCC-CcEeECC
Confidence 4899999998864433222 236788999888543 2444444
No 413
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.10 E-value=25 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=25.4
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCceee
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSV 194 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~V 194 (245)
.+-+.+|..|+.+|-- +-+.-.+|.+|...+=-
T Consensus 65 ~~~~~~C~~C~~~fg~----l~~~g~~C~~C~~~VC~ 97 (153)
T 2zet_C 65 HLNETHCARCLQPYRL----LLNSRRQCLECSLFVCK 97 (153)
T ss_dssp TGGGTBCTTTCCBGGG----CSSCCEECTTTCCEECG
T ss_pred cCCCccchhhcCcccc----ccCCCCcCCCCCchhhc
Confidence 4467899999999876 66678899999765533
No 414
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.03 E-value=21 Score=20.93 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2em3_A 14 ECKVCSKAFTQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCcccCC
Confidence 79999999876
No 415
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.96 E-value=27 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=10.0
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 11 k~~~C~~C~k~f~ 23 (44)
T 2en7_A 11 KPYVCNECGKAFR 23 (44)
T ss_dssp SSSCCTTTCCCCS
T ss_pred cCeECCCCCCccC
Confidence 4788999987654
No 416
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=27.87 E-value=16 Score=22.86 Aligned_cols=9 Identities=56% Similarity=1.313 Sum_probs=4.3
Q ss_pred ccCCCCCCc
Q 025946 183 QLCPYCSQP 191 (245)
Q Consensus 183 iqCPnCGE~ 191 (245)
..||.|.++
T Consensus 44 ~~CP~Cr~~ 52 (55)
T 2ecm_A 44 YRCPLCSGP 52 (55)
T ss_dssp CCCTTSCCS
T ss_pred CcCCCCCCc
Confidence 445555444
No 417
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.65 E-value=32 Score=23.56 Aligned_cols=41 Identities=15% Similarity=0.410 Sum_probs=26.0
Q ss_pred ccCCCCCceeeecccc------cCCCcccCCCCCCceeeeCCeeEEec
Q 025946 162 DSCPNCGNDFQIFKST------LNDELQLCPYCSQPFSVVDDKFVRES 203 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~Vd~~~F~R~~ 203 (245)
..|+.|++.++..+-+ ...+=..|-.|+++|... .-+.+++
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~ 54 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST-TVAIHDA 54 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSS-CCEEETT
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCC-CeEeeCC
Confidence 4899999998753322 122346799999988543 3444444
No 418
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=27.54 E-value=16 Score=26.03 Aligned_cols=18 Identities=39% Similarity=0.853 Sum_probs=12.9
Q ss_pred CCCcccCCCCCCceeeeC
Q 025946 179 NDELQLCPYCSQPFSVVD 196 (245)
Q Consensus 179 n~d~iqCPnCGE~L~Vd~ 196 (245)
++....||.|-+++..+.
T Consensus 47 ~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 47 TDENGLCPACRKPYPEDP 64 (78)
T ss_dssp TSSCSBCTTTCCBCSSCS
T ss_pred hcCCCCCCCCCCccCCCc
Confidence 345678999988876544
No 419
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.52 E-value=21 Score=20.84 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eor_A 14 NCEECGKAFIH 24 (46)
T ss_dssp ECTTTCCEESS
T ss_pred cCCCCCCCcCC
Confidence 79999999876
No 420
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=27.30 E-value=59 Score=23.64 Aligned_cols=17 Identities=12% Similarity=0.011 Sum_probs=3.8
Q ss_pred HHHHHHHHHHhcCccee
Q 025946 145 IVGFGAFLWWASRDIVQ 161 (245)
Q Consensus 145 Il~~~Gf~WWl~rnLIE 161 (245)
+++.+.+.||+.+.+..
T Consensus 69 ~~~~~~~~~~~~~~i~~ 85 (163)
T 2f95_B 69 GINLGLVAATLGGDTAA 85 (163)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334566677665543
No 421
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.24 E-value=22 Score=20.73 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytf_A 14 ECSECQKAFNT 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCC
Confidence 79999999876
No 422
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.18 E-value=15 Score=22.80 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=9.9
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 10 ~C~~CgK~F~~ 20 (36)
T 1fv5_A 10 MCLPCGIAFSS 20 (36)
T ss_dssp EETTTTEECSC
T ss_pred ECCCCCCccCC
Confidence 79999999886
No 423
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=27.14 E-value=30 Score=27.19 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=20.3
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCc
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQP 191 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~ 191 (245)
....||-||...|- .+-..|-.||-+
T Consensus 15 tH~lCrRCG~~sfH------~qK~~CgkCGYp 40 (97)
T 2zkr_2 15 THTLCRRCGSKAYH------LQKSTCGKCGYP 40 (97)
T ss_dssp CEECCTTTCSSCEE------TTSCCBTTTCTT
T ss_pred CCCcCCCCCCccCc------CccccCcccCCc
Confidence 34589999998775 356799999975
No 424
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=27.04 E-value=20 Score=32.07 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=15.9
Q ss_pred cCC--CCCceeeecccccCCCcccCCCCCC
Q 025946 163 SCP--NCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 163 tCP--nCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
.|| .||.++.- ..+-..+...||.|-.
T Consensus 249 pC~~~~CG~~I~~-~~~~gR~t~~CP~CQ~ 277 (310)
T 3twl_A 249 PGKAFVDGKKIDF-ITAGGRTTAYVPELQK 277 (310)
T ss_dssp TTSCEETTEECEE-CCE------ECTTTCC
T ss_pred CCCCCCCCCeEEE-EEECCcccEECCCCcC
Confidence 799 99988765 1223457999999965
No 425
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.00 E-value=21 Score=21.00 Aligned_cols=12 Identities=33% Similarity=0.910 Sum_probs=10.1
Q ss_pred ccCCCCCceeee
Q 025946 162 DSCPNCGNDFQI 173 (245)
Q Consensus 162 ~tCPnCG~eF~~ 173 (245)
-.|+.||+.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em6_A 13 YKCDVCGKEFSQ 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eECCCCCcccCC
Confidence 379999999876
No 426
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=26.93 E-value=12 Score=31.41 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=4.6
Q ss_pred cCCCCCceee
Q 025946 163 SCPNCGNDFQ 172 (245)
Q Consensus 163 tCPnCG~eF~ 172 (245)
.|+.||..+.
T Consensus 165 ~C~~CGE~~~ 174 (191)
T 3d00_A 165 LCPQCREAYP 174 (191)
T ss_dssp ECTTTCCEEE
T ss_pred ECCcCCCChh
Confidence 3555554443
No 427
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.81 E-value=17 Score=21.47 Aligned_cols=11 Identities=45% Similarity=1.135 Sum_probs=9.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eoz_A 14 SCNVCGKAFVL 24 (46)
T ss_dssp EETTTTEEESS
T ss_pred ECcccChhhCC
Confidence 79999999886
No 428
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=26.71 E-value=21 Score=27.26 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=26.7
Q ss_pred eeccCCCCCceeeecccc--c-CCCcccCCCCCCceeeeCCeeE
Q 025946 160 VQDSCPNCGNDFQIFKST--L-NDELQLCPYCSQPFSVVDDKFV 200 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~--L-n~d~iqCPnCGE~L~Vd~~~F~ 200 (245)
++..||.-|..+..-..+ . .+.-++||+-|..|.+++|+=.
T Consensus 48 ~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 91 (119)
T 4aiv_A 48 VGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCL 91 (119)
T ss_dssp EESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTTCBBS
T ss_pred EECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCCCcCc
Confidence 566999999775321000 0 1123889999999998877644
No 429
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=26.50 E-value=14 Score=36.56 Aligned_cols=28 Identities=29% Similarity=0.765 Sum_probs=0.0
Q ss_pred ccCCCCCceeee-cccccCCCcccCCC---CCCce
Q 025946 162 DSCPNCGNDFQI-FKSTLNDELQLCPY---CSQPF 192 (245)
Q Consensus 162 ~tCPnCG~eF~~-~ed~Ln~d~iqCPn---CGE~L 192 (245)
..||+||.+..- .+ ..-...||| |-..+
T Consensus 416 ~~CP~Cgs~l~~~~~---~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 416 TTCPECGSPLAPEKE---GDADIRCPNARGCPGQL 447 (615)
T ss_dssp -----------------------------------
T ss_pred CCCCCCCCeeeecCC---CCEEEEcCCCCCCHHHH
Confidence 379999988653 11 112578887 75543
No 430
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=26.39 E-value=23 Score=25.25 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=8.9
Q ss_pred cccCCCCCCceee
Q 025946 182 LQLCPYCSQPFSV 194 (245)
Q Consensus 182 ~iqCPnCGE~L~V 194 (245)
...||.|++++..
T Consensus 48 ~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 48 SPTDPFNRQMLTE 60 (85)
T ss_dssp CSBCTTTCCBCCG
T ss_pred CCCCCCCcCCCCh
Confidence 4568888777754
No 431
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.39 E-value=20 Score=32.85 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=17.8
Q ss_pred ccCCCCCceeeecccccCCCcccCCCCCC
Q 025946 162 DSCPNCGNDFQIFKSTLNDELQLCPYCSQ 190 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE 190 (245)
..||-||..+.. .-....||.|+-
T Consensus 279 v~Cp~cgA~y~~-----~~kG~lC~vC~l 302 (320)
T 3mkr_B 279 EKCPLSGACYSP-----EFKGQICKVTTV 302 (320)
T ss_dssp EECTTTCCEECG-----GGTTSBCTTTSS
T ss_pred ccCCCCCCeech-----hhCCCCCCCCcC
Confidence 489999988776 223678999964
No 432
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.29 E-value=30 Score=19.78 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=9.8
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 10 k~~~C~~C~k~f~ 22 (42)
T 2eos_A 10 KPYPCEICGTRFR 22 (42)
T ss_dssp CCBCCSSSCCCBS
T ss_pred CCEECCCCCCccC
Confidence 4788999987653
No 433
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.26 E-value=13 Score=25.14 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=9.7
Q ss_pred cccCCCCCCceeee
Q 025946 182 LQLCPYCSQPFSVV 195 (245)
Q Consensus 182 ~iqCPnCGE~L~Vd 195 (245)
...||.|.+++..+
T Consensus 50 ~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 50 SNRCPKCNIVVHQT 63 (72)
T ss_dssp CSSCTTTCCCCCSS
T ss_pred CCcCCCcCcccCcc
Confidence 45788888877543
No 434
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.21 E-value=16 Score=21.21 Aligned_cols=11 Identities=36% Similarity=0.917 Sum_probs=9.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2eoj_A 14 ECCECGKVFSR 24 (44)
T ss_dssp EETTTTEECSS
T ss_pred eCCCCCCccCC
Confidence 79999998876
No 435
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=26.12 E-value=22 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=10.3
Q ss_pred cccCCCCCCceee
Q 025946 182 LQLCPYCSQPFSV 194 (245)
Q Consensus 182 ~iqCPnCGE~L~V 194 (245)
...||.|++++..
T Consensus 57 ~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 57 DQTDPFNRSPLTM 69 (98)
T ss_dssp SCBCTTTCSBCCT
T ss_pred CCCCCCCCCCCCh
Confidence 4579999998864
No 436
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.12 E-value=29 Score=20.28 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=10.4
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2yti_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCTTCCSSSCCCCS
T ss_pred CcCeECCCCCcccC
Confidence 35788999987653
No 437
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.90 E-value=30 Score=20.21 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=10.2
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enf_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcCeECCCCCcccC
Confidence 35788999987653
No 438
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=25.85 E-value=45 Score=30.89 Aligned_cols=21 Identities=24% Similarity=0.686 Sum_probs=15.4
Q ss_pred HHHHHhcCcceec----cCCCCCce
Q 025946 150 AFLWWASRDIVQD----SCPNCGND 170 (245)
Q Consensus 150 Gf~WWl~rnLIE~----tCPnCG~e 170 (245)
.+.=|.+.++++- .|+.||.+
T Consensus 104 ~LL~WFk~~fF~wvn~p~C~~Cg~~ 128 (335)
T 1x3z_A 104 ELLRYFKQDFFKWCNKPDCNHCGQN 128 (335)
T ss_dssp HHHHHHHHTTCEECSSCCCSSSCSS
T ss_pred HHHHHHHhcCCEeeCCCCccccCCC
Confidence 3333888887763 89999975
No 439
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=25.82 E-value=23 Score=21.59 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 9 ~C~~C~k~F~~ 19 (48)
T 3iuf_A 9 ACDICGKRYKN 19 (48)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCcCcccCC
Confidence 69999988875
No 440
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.65 E-value=32 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=9.4
Q ss_pred ccCCCCCCceee
Q 025946 183 QLCPYCSQPFSV 194 (245)
Q Consensus 183 iqCPnCGE~L~V 194 (245)
..||.|.+++..
T Consensus 56 ~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 56 TGCPVCYTPAWI 67 (117)
T ss_dssp TBCSSSCCBCSC
T ss_pred CCCcCCCCcCcc
Confidence 579999998743
No 441
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.01 E-value=32 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=10.4
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (44)
T 2eou_A 10 KTTSECQECGKIFR 23 (44)
T ss_dssp SCCCCCTTTCCCCS
T ss_pred CcCeECCCCCcccC
Confidence 35788999987664
No 442
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.97 E-value=17 Score=21.25 Aligned_cols=11 Identities=36% Similarity=1.223 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eq3_A 14 ECNQCGKAFSV 24 (46)
T ss_dssp EETTTTEECSS
T ss_pred ECCCCChhhCC
Confidence 79999999876
No 443
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.96 E-value=26 Score=20.60 Aligned_cols=11 Identities=36% Similarity=1.123 Sum_probs=9.8
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em2_A 14 KCKECGKAFRQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCchhCC
Confidence 79999999876
No 444
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.83 E-value=32 Score=20.05 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=10.4
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq2_A 10 GKPYQCNECGKAFS 23 (46)
T ss_dssp SCSSSCCSSCCCCS
T ss_pred CCCeECCCCCcccC
Confidence 35788999987653
No 445
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.73 E-value=33 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=9.8
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2yth_A 11 KPFQCEECGKRFT 23 (46)
T ss_dssp SSBCCSSSCCCBS
T ss_pred cCCCCCCCCcccC
Confidence 5788999987653
No 446
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.70 E-value=19 Score=20.88 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (44)
T 2eox_A 14 NCNECGKAFTR 24 (44)
T ss_dssp EETTTTEEESS
T ss_pred ECcccCcccCC
Confidence 79999998876
No 447
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.70 E-value=38 Score=26.55 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=27.6
Q ss_pred ccCCCCCceeeecccc--cC----CCcccCCCCCCceeeeCCeeEEecccc
Q 025946 162 DSCPNCGNDFQIFKST--LN----DELQLCPYCSQPFSVVDDKFVRESVRF 206 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~--Ln----~d~iqCPnCGE~L~Vd~~~F~R~~~~f 206 (245)
..|..|++.+++.+-+ ++ .+=..|-.|+++|.- ..|.+++.-|
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~~f~~~g~~y 55 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--RCFSRGESVY 55 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCS--CCEESSSCEE
T ss_pred CccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCC--CCcccCCeee
Confidence 4899999988763211 22 234688899998864 3377766443
No 448
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=24.60 E-value=31 Score=22.55 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.1
Q ss_pred cccCCCCCCcee
Q 025946 182 LQLCPYCSQPFS 193 (245)
Q Consensus 182 ~iqCPnCGE~L~ 193 (245)
...||.|.+++.
T Consensus 40 ~~~CP~Cr~~~~ 51 (68)
T 1chc_A 40 NPTCPLCKVPVE 51 (68)
T ss_dssp SCSTTTTCCCCC
T ss_pred cCcCcCCChhhH
Confidence 357999988775
No 449
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=24.45 E-value=21 Score=24.87 Aligned_cols=28 Identities=32% Similarity=0.714 Sum_probs=16.4
Q ss_pred CCCCceeee--cccccC-CCcccCCCCCCce
Q 025946 165 PNCGNDFQI--FKSTLN-DELQLCPYCSQPF 192 (245)
Q Consensus 165 PnCG~eF~~--~ed~Ln-~d~iqCPnCGE~L 192 (245)
|.||..|.. .+..+. .+...||.|.+++
T Consensus 30 ~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 30 PCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 446666643 222222 2457899999887
No 450
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.29 E-value=20 Score=21.02 Aligned_cols=11 Identities=36% Similarity=1.213 Sum_probs=9.7
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.||+.|..
T Consensus 14 ~C~~C~k~F~~ 24 (45)
T 2epu_A 14 ECTHCGKSFRA 24 (45)
T ss_dssp EETTTTEEESS
T ss_pred cCCCCCCccCC
Confidence 79999999876
No 451
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.12 E-value=39 Score=24.96 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=28.6
Q ss_pred ccCCCCCceeeecccc--c----CCCcccCCCCCCceeeeC-CeeEEecccc
Q 025946 162 DSCPNCGNDFQIFKST--L----NDELQLCPYCSQPFSVVD-DKFVRESVRF 206 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~--L----n~d~iqCPnCGE~L~Vd~-~~F~R~~~~f 206 (245)
..|+.|++.+++.+-+ + ..+=..|-.|+++|...+ .-|.+++.-|
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~y 55 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKL 55 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCC
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeee
Confidence 4799999988863222 1 123468999999996433 4456665443
No 452
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.76 E-value=26 Score=26.74 Aligned_cols=43 Identities=12% Similarity=0.350 Sum_probs=27.0
Q ss_pred eccCCCCCceeeecccc------cCCCcccCCCCCCceeee-CCeeEEec
Q 025946 161 QDSCPNCGNDFQIFKST------LNDELQLCPYCSQPFSVV-DDKFVRES 203 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~Vd-~~~F~R~~ 203 (245)
...|+.|++.+++.+-+ ...+=..|-.|+.+|... ..-|.+++
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg 110 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 110 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSS
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECC
Confidence 45899999988863211 122346899999999632 23444444
No 453
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.70 E-value=35 Score=19.81 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=10.3
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep1_A 10 EKPYECSDCGKSFI 23 (46)
T ss_dssp CCSSCCSSSCCCCS
T ss_pred CCCcCCCCCCchhC
Confidence 35788999987653
No 454
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.66 E-value=33 Score=27.43 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=24.5
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCe
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK 198 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~ 198 (245)
.-+.+|..|+++|-- +-+...+|.+|...+=-+=+.
T Consensus 53 ~~~~~C~~C~~~~g~----l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGM----LGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCST----TSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCccc----ccCCCCCCCCCCcccccccCC
Confidence 446799999999943 445568899887655433333
No 455
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.58 E-value=27 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=9.5
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
.|+.|++.|..
T Consensus 12 ~C~~C~k~f~~ 22 (43)
T 2yrm_A 12 FCNECDCRFSE 22 (43)
T ss_dssp CCSSSCCCBSS
T ss_pred ECCCCCCeeCC
Confidence 79999998876
No 456
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.07 E-value=36 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=10.3
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq1_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp SCCCCCTTTTCCCS
T ss_pred CCCeECCcCChhhC
Confidence 35788999987653
No 457
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.00 E-value=38 Score=19.83 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=10.3
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.||..+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enh_A 10 EKPYECDVCRKAFS 23 (46)
T ss_dssp SSSCBCTTTCCBCS
T ss_pred CCCcCCCCcCchhC
Confidence 35788999987653
No 458
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=22.94 E-value=23 Score=28.73 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=18.8
Q ss_pred CCCcccCCCCCCceeeeCCeeEE
Q 025946 179 NDELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 179 n~d~iqCPnCGE~L~Vd~~~F~R 201 (245)
.++.-+|..||++|...+.||.-
T Consensus 17 e~G~Y~C~~Cg~pLF~S~~KfdS 39 (124)
T 2kv1_A 17 EPGVYVCAKCSYELFSSHSKYAH 39 (124)
T ss_dssp CCEEEEETTTCCBCCCTTSCCCC
T ss_pred CCEEEEecCCCCcccccCCcccC
Confidence 44688999999999988888854
No 459
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.93 E-value=39 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=9.7
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2emg_A 11 NPFICSECGKVFT 23 (46)
T ss_dssp CSCBCTTTCCBCS
T ss_pred CCEECCccCcccC
Confidence 4788999987653
No 460
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.90 E-value=61 Score=22.73 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=21.8
Q ss_pred eccCCCCCceeeecccc------cCCCcccCCCCCCcee
Q 025946 161 QDSCPNCGNDFQIFKST------LNDELQLCPYCSQPFS 193 (245)
Q Consensus 161 E~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~ 193 (245)
...|+.|++.+++ +-+ ...+-..|..|+.+|.
T Consensus 25 ~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRG-PFLVALGKSWHPEEFNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCS-CEEEETTEEECTTTCBCSSSCCBCS
T ss_pred CCCCccCCCEecc-eEEEECCccccccCCccCCCCCCCC
Confidence 3479999998753 222 2334578999999886
No 461
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=22.77 E-value=40 Score=27.36 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=31.4
Q ss_pred cceeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCe-eEEec
Q 025946 158 DIVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDK-FVRES 203 (245)
Q Consensus 158 nLIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~-F~R~~ 203 (245)
-.+...||.-|..+.. ...+.+.++||+-|..|..+.|. -...+
T Consensus 81 ~A~~~~CpH~G~~L~~--g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gP 125 (165)
T 1nyk_A 81 VAYSAVCTHLGCIVSQ--WVADEEAALCPCHGGVYDLRHGAQVIAGP 125 (165)
T ss_dssp EEEECBCTTTCCBCCE--EEGGGTEEECTTTCCEEEGGGTTEEEESS
T ss_pred EEEEeecCCCCeEccc--ccCCCCEEECCCCCCEEcCCCCCeeecCC
Confidence 3456799999988752 12345689999999999998554 44443
No 462
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.57 E-value=38 Score=19.90 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=10.3
Q ss_pred CCcccCCCCCCcee
Q 025946 180 DELQLCPYCSQPFS 193 (245)
Q Consensus 180 ~d~iqCPnCGE~L~ 193 (245)
+.+..|+.|+..+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eom_A 10 ERGHRCSDCGKFFL 23 (46)
T ss_dssp CSSCCCSSSCCCCS
T ss_pred CCCcCCCCCCCeeC
Confidence 35788999987653
No 463
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=22.50 E-value=19 Score=35.62 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=0.8
Q ss_pred cccCCCCCCceee
Q 025946 182 LQLCPYCSQPFSV 194 (245)
Q Consensus 182 ~iqCPnCGE~L~V 194 (245)
|..||.||+++..
T Consensus 415 P~~CP~Cgs~l~~ 427 (615)
T 3sgi_A 415 PTTCPECGSPLAP 427 (615)
T ss_dssp C------------
T ss_pred CCCCCCCCCeeee
Confidence 7899999999975
No 464
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=22.36 E-value=30 Score=28.07 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=15.8
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~ 193 (245)
.||-|...+.+ |++-| ||-.+.
T Consensus 210 ~c~i~~~~~~d--------Pv~~~-~gh~f~ 231 (281)
T 2c2l_A 210 CGKISFELMRE--------PCITP-SGITYD 231 (281)
T ss_dssp BCTTTCSBCSS--------EEECS-SCCEEE
T ss_pred CCcCcCCHhcC--------CeECC-CCCEEC
Confidence 89999866654 77777 876553
No 465
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.35 E-value=37 Score=19.86 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=9.8
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2eoh_A 11 KPYECKECRKTFI 23 (46)
T ss_dssp CSCCCSSSCCCCS
T ss_pred CCcCCCCcCchhC
Confidence 4788999987653
No 466
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.10 E-value=58 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=21.9
Q ss_pred ccCCCCCceeeecccc------cCCCcccCCCCCCceee
Q 025946 162 DSCPNCGNDFQIFKST------LNDELQLCPYCSQPFSV 194 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~------Ln~d~iqCPnCGE~L~V 194 (245)
..|+.|++.+++ +-+ ...+=..|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSS
T ss_pred CcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCC
Confidence 479999998874 221 22234789999998864
No 467
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.07 E-value=47 Score=24.45 Aligned_cols=23 Identities=26% Similarity=0.820 Sum_probs=16.0
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCC
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCS 189 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCG 189 (245)
.+.+||.|+=+=.. + ...||.|.
T Consensus 66 ~~~~C~~C~G~G~~----i---~~~C~~C~ 88 (104)
T 2ctt_A 66 MRSTCRRCGGRGSI----I---ISPCVVCR 88 (104)
T ss_dssp EEEECSSSSSSSEE----C---SSCCSSSS
T ss_pred EEEECCcCCCcceE----C---CCcCCCCC
Confidence 56789999866555 2 34699995
No 468
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.86 E-value=41 Score=19.67 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=9.7
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.||..+.
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2en9_A 11 KLFKCNECKKTFT 23 (46)
T ss_dssp CCCBCTTTCCBCS
T ss_pred CCEECCccCcccC
Confidence 4788999987653
No 469
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.75 E-value=25 Score=22.76 Aligned_cols=8 Identities=38% Similarity=1.369 Sum_probs=4.1
Q ss_pred cCCCCCce
Q 025946 163 SCPNCGND 170 (245)
Q Consensus 163 tCPnCG~e 170 (245)
+||.|..+
T Consensus 58 ~CP~Cr~~ 65 (69)
T 2ea6_A 58 TCPTCRKK 65 (69)
T ss_dssp SCTTTCCC
T ss_pred CCCCCCCc
Confidence 55555544
No 470
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=21.67 E-value=31 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred cCCCCCceeeecccccCCCcccCCCCCCce
Q 025946 163 SCPNCGNDFQIFKSTLNDELQLCPYCSQPF 192 (245)
Q Consensus 163 tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L 192 (245)
.|..|+..+.+ +-+--.+|..||..+
T Consensus 359 ~C~~C~~~~~g----~~~qg~~C~~C~~~~ 384 (406)
T 2vrw_B 359 SCKACQMLLRG----TFYQGYRCYRCRAPA 384 (406)
T ss_dssp BCTTTCCBCCS----SSSCEEEETTTCCEE
T ss_pred CCccccchhce----eCCCCCCCCCCcCcc
Confidence 89999988876 445556788887665
No 471
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=21.64 E-value=18 Score=27.45 Aligned_cols=35 Identities=23% Similarity=0.606 Sum_probs=22.4
Q ss_pred ccCCCCCceeee-cccc---cCCCcccCCCCCCceeeeC
Q 025946 162 DSCPNCGNDFQI-FKST---LNDELQLCPYCSQPFSVVD 196 (245)
Q Consensus 162 ~tCPnCG~eF~~-~ed~---Ln~d~iqCPnCGE~L~Vd~ 196 (245)
.+|-.|...-.. .|.. ||=+--.||||+.-++.|+
T Consensus 6 ~~C~kCEq~~vn~~DqelHdlnCs~NiCPYC~nRls~eG 44 (77)
T 2l7x_A 6 QTCTICETTPVNAIDAEMHDLNCSYNICPYCASRLTSDG 44 (77)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHTTTCCTTTCCCCCTTT
T ss_pred ceeeeeccccccHHHHHHHHcCCCcccChhhhccCCccc
Confidence 478888755333 2333 3336778999999886554
No 472
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.48 E-value=34 Score=23.05 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=5.6
Q ss_pred cCCCCCceeee
Q 025946 163 SCPNCGNDFQI 173 (245)
Q Consensus 163 tCPnCG~eF~~ 173 (245)
+||.|..++..
T Consensus 54 ~CP~Cr~~~~~ 64 (78)
T 2ect_A 54 SCPVCRKSLTG 64 (78)
T ss_dssp SCTTTCCCCCC
T ss_pred cCcCcCCccCC
Confidence 55555555443
No 473
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=21.45 E-value=65 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=18.3
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCC
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYC 188 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnC 188 (245)
-+..||=||..|.- ++.+..++..=+.|
T Consensus 47 g~~~CpYCg~~y~~-~~~~~~~et~p~~c 74 (87)
T 2jz8_A 47 DEKICPYCSTLYRY-DPSLSYNQTNPTGC 74 (87)
T ss_dssp CEECCTTTCCEEEC-CTTSCTTCCCSSCC
T ss_pred CeEECCCCCCEeEc-CCCCCcCCcCCCCc
Confidence 35599999988875 44555555444445
No 474
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=21.35 E-value=23 Score=26.30 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=9.7
Q ss_pred cccCCCCCCceee
Q 025946 182 LQLCPYCSQPFSV 194 (245)
Q Consensus 182 ~iqCPnCGE~L~V 194 (245)
...||.|++++..
T Consensus 63 ~~~cP~~~~~l~~ 75 (100)
T 2kre_A 63 SPTDPFNRQTLTE 75 (100)
T ss_dssp CSBCSSSCCBCCT
T ss_pred CCCCCCCCCCCCh
Confidence 4678888888764
No 475
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.24 E-value=25 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=12.8
Q ss_pred cCCCcccCCCCCCceeee
Q 025946 178 LNDELQLCPYCSQPFSVV 195 (245)
Q Consensus 178 Ln~d~iqCPnCGE~L~Vd 195 (245)
+......||.|.+++..+
T Consensus 109 ~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 109 FKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTTCCBCTTTCCBCCTT
T ss_pred HHhCCCcCCCCCccCCCC
Confidence 334456899999988654
No 476
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=21.20 E-value=50 Score=26.66 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=27.3
Q ss_pred eeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEE
Q 025946 160 VQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVR 201 (245)
Q Consensus 160 IE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R 201 (245)
+...||.-|......+ .++.+.||.-|..|.. +|+-..
T Consensus 104 ~~~~CtH~G~~l~~~~---~~~~~~CP~Hgs~Fd~-~G~~~~ 141 (179)
T 1vf5_D 104 INAVCTHLGCVVPWNA---AENKFKCPCHGSQYDE-TGRVIR 141 (179)
T ss_dssp CBCBCTTTSCBCCBCS---SSSSEECTTTCCEECS-SSCCCS
T ss_pred EeCccCCCCCCCcccC---CCCEEECCCCCCEECC-CCcEec
Confidence 3568999998876422 3468999999999987 555433
No 477
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=20.97 E-value=26 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.600 Sum_probs=19.4
Q ss_pred cCCCCCceeee--cccccCCCcccCCCCCCcee
Q 025946 163 SCPNCGNDFQI--FKSTLNDELQLCPYCSQPFS 193 (245)
Q Consensus 163 tCPnCG~eF~~--~ed~Ln~d~iqCPnCGE~L~ 193 (245)
.|-+|+.+..- .|-..+++.+.||-|++.+.
T Consensus 37 AC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 37 ACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred eeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45555544432 33445677888999988885
No 478
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.92 E-value=42 Score=19.59 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=9.8
Q ss_pred CcccCCCCCCcee
Q 025946 181 ELQLCPYCSQPFS 193 (245)
Q Consensus 181 d~iqCPnCGE~L~ 193 (245)
.+..|+.|+..+.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2emz_A 11 RPFKCNECGKGFG 23 (46)
T ss_dssp CSCCCSSSCCCCS
T ss_pred CCeECCCCCcccC
Confidence 4788999987653
No 479
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.78 E-value=27 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=24.5
Q ss_pred cCCCCCceeeecccc-cCC-CcccCCCCCCceeeeCC
Q 025946 163 SCPNCGNDFQIFKST-LND-ELQLCPYCSQPFSVVDD 197 (245)
Q Consensus 163 tCPnCG~eF~~~ed~-Ln~-d~iqCPnCGE~L~Vd~~ 197 (245)
.||.|+.+=+.+.-. -++ -...|-.||..-+|+-.
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSS
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCccccccc
Confidence 899999886662110 011 26889999999888754
No 480
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=20.69 E-value=4.5 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.619 Sum_probs=17.8
Q ss_pred eeccCCCCCceeee-----------cccccCC-CcccCCCCC
Q 025946 160 VQDSCPNCGNDFQI-----------FKSTLND-ELQLCPYCS 189 (245)
Q Consensus 160 IE~tCPnCG~eF~~-----------~ed~Ln~-d~iqCPnCG 189 (245)
+...|..|+.+... +++.|-+ =.++||.|-
T Consensus 12 I~t~C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 12 ILCVCCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp EEEEBTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred EEEECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 45588888886543 2333322 367888773
No 481
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=20.28 E-value=54 Score=29.20 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=32.1
Q ss_pred ceeccCCCCCceeeecccccCCCcccCCCCCCceeeeCCeeEEe
Q 025946 159 IVQDSCPNCGNDFQIFKSTLNDELQLCPYCSQPFSVVDDKFVRE 202 (245)
Q Consensus 159 LIE~tCPnCG~eF~~~ed~Ln~d~iqCPnCGE~L~Vd~~~F~R~ 202 (245)
.+...||.-|..+..-+-.-+.+.++||+-|-.+..++|+-...
T Consensus 64 a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G~~~~~ 107 (392)
T 2de6_A 64 CLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDI 107 (392)
T ss_dssp EEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEE
T ss_pred EEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCCccccc
Confidence 45669999998875411112457899999999999877877764
No 482
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.27 E-value=63 Score=23.77 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=20.7
Q ss_pred ccCCCCCceeeecccc-------cC--CCcccCCCCCCceeeeCCeeE
Q 025946 162 DSCPNCGNDFQIFKST-------LN--DELQLCPYCSQPFSVVDDKFV 200 (245)
Q Consensus 162 ~tCPnCG~eF~~~ed~-------Ln--~d~iqCPnCGE~L~Vd~~~F~ 200 (245)
..|+.|++.++..+.. .. .+=-.|-.|+.+|. ++.|.
T Consensus 64 ~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~--~~~f~ 109 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI--GQKFM 109 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCT--TSEEE
T ss_pred ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccC--CCeeE
Confidence 3688888777642221 12 33446677777765 45553
Done!