Query 025947
Match_columns 245
No_of_seqs 109 out of 317
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 21:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_B RP10A, 40S ribosomal pr 100.0 4E-108 1E-112 734.9 15.1 235 1-235 1-235 (255)
2 2xzm_4 40S ribosomal protein S 100.0 3E-105 1E-109 717.8 25.0 236 1-236 1-242 (265)
3 3j20_A 30S ribosomal protein S 100.0 5.9E-85 2E-89 567.8 21.4 192 16-223 5-196 (198)
4 3bk6_A PH stomatin; archaea, t 85.5 7.9 0.00027 31.6 10.4 90 124-217 20-109 (188)
5 2rpb_A Hypothetical membrane p 79.7 8.4 0.00029 28.5 7.7 89 125-217 17-105 (113)
6 4fvg_A Stomatin; mixed alpha-b 67.9 40 0.0014 26.0 10.9 88 124-217 25-114 (133)
7 1win_A Flotillin 2; BAND 7 dom 56.5 68 0.0023 24.9 9.6 91 124-217 21-119 (143)
8 3mhs_B Protein SUS1; multi-pro 27.5 75 0.0026 23.9 4.3 40 162-202 40-86 (96)
9 4dhx_B Enhancer of yellow 2 tr 20.4 1.1E+02 0.0039 23.1 4.2 40 163-202 45-92 (101)
10 1avo_A 11S regulator; proteaso 18.1 23 0.00078 24.6 -0.3 17 217-233 40-56 (60)
No 1
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=100.00 E-value=4.3e-108 Score=734.92 Aligned_cols=235 Identities=60% Similarity=0.955 Sum_probs=213.7
Q ss_pred CccCCCccccCCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhc
Q 025947 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHA 80 (245)
Q Consensus 1 m~~gk~k~~~kgkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~ 80 (245)
|||||||+++|||||+|||++|||++|+||+|+||++|+.++||+||||||||++++||+|+|||||+|||||+||++++
T Consensus 1 ma~gknk~l~kgkkg~kkk~~D~f~~K~WY~VkAP~~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~~ 80 (255)
T 3u5c_B 1 MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHS 80 (255)
T ss_dssp -------------------CCCTTTTCCEEEEECCSSSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTTS
T ss_pred CCccCCCcccccccCCcccccCCcccceeEEEeCccccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeeeCCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhh
Q 025947 81 YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQ 160 (245)
Q Consensus 81 ~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ 160 (245)
|+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++|+||.+|||||++||
T Consensus 81 ~rK~kl~i~~V~G~~~lT~F~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQ 160 (255)
T 3u5c_B 81 FRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSH 160 (255)
T ss_dssp SCEEEEECCCEETTEECCEEEEECCCHHHHHHHCCTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHH
T ss_pred ceEEEEEEEeecCCEEEEEEcceeechhhhhhhccccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchhhhhhcCCcc
Q 025947 161 IRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVF 235 (245)
Q Consensus 161 ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~ 235 (245)
+++||++|+|+|++++++++|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||||
T Consensus 161 i~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~ 235 (255)
T 3u5c_B 161 IRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEG 235 (255)
T ss_dssp HHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=100.00 E-value=3.2e-105 Score=717.80 Aligned_cols=236 Identities=45% Similarity=0.784 Sum_probs=210.4
Q ss_pred CccCCCcccc-C-CcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCch-
Q 025947 1 MAVGKNKRIS-K-GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE- 77 (245)
Q Consensus 1 m~~gk~k~~~-k-gkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~- 77 (245)
|||||||+++ + ||||+|||++|||++|+||+|+||++|+.++||+||||||||++++||+|+|||||||||||+||+
T Consensus 1 mavgknk~l~~k~gkkg~kkk~~Dpf~~K~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~ 80 (265)
T 2xzm_4 1 MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSN 80 (265)
T ss_dssp --------------CCCSCCCCSCTTSSEEEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTT
T ss_pred CCccCCCccccccCcccccccccCCCcccceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChh
Confidence 9999999996 5 799999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhceeEEEEEEeeeCCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecC---Ccccccc
Q 025947 78 EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTC 154 (245)
Q Consensus 78 ~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~---~q~kkt~ 154 (245)
+++|+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++|+ ||.+|||
T Consensus 81 ~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSlVrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~ 160 (265)
T 2xzm_4 81 DKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTC 160 (265)
T ss_dssp TSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHSCCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCB
T ss_pred hhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhhhcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchhhhhhcCCc
Q 025947 155 YAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPV 234 (245)
Q Consensus 155 Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~ 234 (245)
||++||+++||++|+|+|++++++++|+|||+++++|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||+
T Consensus 161 Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k~IyPL~~V~IrKvKvLk~Pk~~~~~l~e~hg~ 240 (265)
T 2xzm_4 161 YAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSH 240 (265)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHTTTCCEEEEEEEEEEEEECCCC-----------
T ss_pred eccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhhhccccceEEEEEEEEEecCchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ce
Q 025947 235 FL 236 (245)
Q Consensus 235 ~~ 236 (245)
|.
T Consensus 241 ~~ 242 (265)
T 2xzm_4 241 EK 242 (265)
T ss_dssp --
T ss_pred cc
Confidence 74
No 3
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.9e-85 Score=567.77 Aligned_cols=192 Identities=34% Similarity=0.524 Sum_probs=186.1
Q ss_pred CcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhceeEEEEEEeeeCCCe
Q 025947 16 GKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKN 95 (245)
Q Consensus 16 ~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~~~K~kf~i~~V~G~~ 95 (245)
..+|++|||++|+||+|+||++|+.+++|+|||| .||+|+|||||+|||||+||++++|+||+|++++|+|++
T Consensus 5 ~~~k~~D~~~~K~WY~V~AP~~F~~~~iG~T~~~-------~~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~ 77 (198)
T 3j20_A 5 RATTTRDKWKLKQWYIIYAPDFFGGVEVGLTPAD-------DPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQN 77 (198)
T ss_dssp ----CCCCSSSEEEEEEECCSSSSCCCCCEEEEE-------SSSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSE
T ss_pred ccccccCCCccceeEEEECchhcCCceeEEEEcc-------CcccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCE
Confidence 3458899999999999999999999999999999 589999999999999999999999999999999999999
Q ss_pred eeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHH
Q 025947 96 VLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQ 175 (245)
Q Consensus 96 a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~ 175 (245)
|+|+|||||||+||||||||||||+|||++||+|+|||+|||||+|||+++ |++||+++||++|.|+|+++
T Consensus 78 a~T~F~G~~lT~DklrSlVrk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IRk~m~eii~~~ 148 (198)
T 3j20_A 78 AYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKK 148 (198)
T ss_dssp EEEEEEEECCCHHHHHHHCCSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcceeechhhhhhheecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCcc
Q 025947 176 AASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKF 223 (245)
Q Consensus 176 ~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~ 223 (245)
+++++|+|||+++++|+|++||+++|++|||||+|||||||||+.|+|
T Consensus 149 ~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~IrKvKvlk~Pk~ 196 (198)
T 3j20_A 149 AEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQV 196 (198)
T ss_dssp HHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEEEEEEEECSCS
T ss_pred hccCCHHHHHHHHcCChHHHHHHHhhCcccccceEEEEEEEEeeccCc
Confidence 999999999999999999999999999999999999999999999997
No 4
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=85.53 E-value=7.9 Score=31.57 Aligned_cols=90 Identities=10% Similarity=0.135 Sum_probs=56.6
Q ss_pred EEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhccc
Q 025947 124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLS 203 (245)
Q Consensus 124 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~ 203 (245)
..++.|+||..|+|-+++.-+=. + ..+-.|.-..-..+++......+.+.+...+++|++.. -+.|+.+|......
T Consensus 20 ~~~v~TkD~~~V~v~~~v~yrI~-d-p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~--R~~i~~~i~~~l~~ 95 (188)
T 3bk6_A 20 VQETITKDNVPVRVNAVVYFRVV-D-PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE--RDKLNMQLQRIIDE 95 (188)
T ss_dssp EEEEECTTSCEEEEEEEEEEEES-C-HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC--HHHHHHHHHHHHHH
T ss_pred CceeEcCCCCEEEEEEEEEEEEC-C-HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh--HHHHHHHHHHHHHH
Confidence 45899999999999888655432 1 22223332233456788888999999999999999863 34444444444443
Q ss_pred ccccccEEEEEEEe
Q 025947 204 IYPLQNVFIRKVKI 217 (245)
Q Consensus 204 IyPl~~V~IrKvKv 217 (245)
..--.-++|..|.+
T Consensus 96 ~~~~~GI~v~~v~I 109 (188)
T 3bk6_A 96 ATDPWGIKVTAVEI 109 (188)
T ss_dssp HTGGGTEEEEEEEE
T ss_pred HHHhcCeEEEEEEE
Confidence 33223455555544
No 5
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=79.71 E-value=8.4 Score=28.54 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=55.4
Q ss_pred EEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccc
Q 025947 125 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSI 204 (245)
Q Consensus 125 vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~I 204 (245)
..+.|+||-.+++-+.+.-+=. +. .+-.|.-..-..+|+..+...+.+.+.+.+++|++. =-+.|+.+|....+..
T Consensus 17 ~~v~T~D~~~v~v~~~v~~rI~-dp-~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~--~R~~i~~~i~~~l~~~ 92 (113)
T 2rpb_A 17 QEVICKDNVVVTVDAVVYYQVI-DP-VKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLS--GRDIINARLREELDKI 92 (113)
T ss_dssp EEEECTTSCEEEECEEEEEEES-CT-TTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHH--CHHHHHHHHHHHHHHH
T ss_pred ceeEeCCCCEEEEEEEEEEEEC-CH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHh--CHHHHHHHHHHHHHHH
Confidence 5889999999999887554431 21 222222223345789999999999999999999986 2344555554444433
Q ss_pred cccccEEEEEEEe
Q 025947 205 YPLQNVFIRKVKI 217 (245)
Q Consensus 205 yPl~~V~IrKvKv 217 (245)
.--.-++|-.+.+
T Consensus 93 ~~~~Gi~v~~v~I 105 (113)
T 2rpb_A 93 TDRWGVKITRVEI 105 (113)
T ss_dssp HGGGTEECCCEEE
T ss_pred HHhcCeEEEEEEE
Confidence 3222444444444
No 6
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=67.90 E-value=40 Score=26.00 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=59.7
Q ss_pred EEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHH--HccchHHHHHHHhc
Q 025947 124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEK--FIAEIIGREIEKAT 201 (245)
Q Consensus 124 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~--li~~~i~keI~k~~ 201 (245)
...+.|+|+..+.|-.+++-+=. .-.+-.|.-..-..+++......|.+.+.+.++++++.. -+...+...+.+.+
T Consensus 25 ~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~ 102 (133)
T 4fvg_A 25 PQEVLTKDSVTISVDGVVYYRVQ--NATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDAT 102 (133)
T ss_dssp EEEEECTTCCEEEEEEEEEEEES--CHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEEEEEEEEEEe--ehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45799999999998887765542 223444444556678888999999999999999999852 34444444444444
Q ss_pred ccccccccEEEEEEEe
Q 025947 202 LSIYPLQNVFIRKVKI 217 (245)
Q Consensus 202 k~IyPl~~V~IrKvKv 217 (245)
.. .-|+|..|.+
T Consensus 103 ~~----~GI~V~~V~i 114 (133)
T 4fvg_A 103 DD----WGIKVERVEI 114 (133)
T ss_dssp GG----GTEEEEEEEE
T ss_pred hc----CCEEEEEEEE
Confidence 33 2566666655
No 7
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=56.50 E-value=68 Score=24.92 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=54.1
Q ss_pred EEEEEeCCCcEEEEEEEEEeeecCCcccccchhh-------hhhh-HHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHH
Q 025947 124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQ-------ASQI-RQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGR 195 (245)
Q Consensus 124 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~-------~sQ~-~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~k 195 (245)
..+|.|+|+-.|.|-++++-+=.. ...+-.|+- ..++ ..+...+...+.+.+.+++++|++.. -+.|..
T Consensus 21 ~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tldeils~--R~~i~~ 97 (143)
T 1win_A 21 CEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQD--RDQFAK 97 (143)
T ss_dssp EEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHT--HHHHHH
T ss_pred cceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHH
Confidence 347899999999888877665431 122222221 1222 33566677899999999999999973 344455
Q ss_pred HHHHhcccccccccEEEEEEEe
Q 025947 196 EIEKATLSIYPLQNVFIRKVKI 217 (245)
Q Consensus 196 eI~k~~k~IyPl~~V~IrKvKv 217 (245)
+|...+..----.-++|.-+.+
T Consensus 98 ~v~~~~~~~~~~~Gi~V~~v~I 119 (143)
T 1win_A 98 LVREVAAPDVGRMGIEILSFTI 119 (143)
T ss_dssp HHHHHHHHHHTTTTEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEEEE
Confidence 5444443332223355555544
No 8
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=27.55 E-value=75 Score=23.91 Aligned_cols=40 Identities=8% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHH-------ccchHHHHHHHhcc
Q 025947 162 RQIRRKMREIMIAQAASCDLKGLVEKF-------IAEIIGREIEKATL 202 (245)
Q Consensus 162 ~~IRk~m~eii~~~~~~~~l~e~V~~l-------i~~~i~keI~k~~k 202 (245)
..+|....+++.+. .+.++++++..+ +|+++-+|+....+
T Consensus 40 Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir 86 (96)
T 3mhs_B 40 DKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIR 86 (96)
T ss_dssp HHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHH
Confidence 34666777777776 789999998765 67888887766544
No 9
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.40 E-value=1.1e+02 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.348 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHH-hhCCHHHHHHHH-------ccchHHHHHHHhcc
Q 025947 163 QIRRKMREIMIAQA-ASCDLKGLVEKF-------IAEIIGREIEKATL 202 (245)
Q Consensus 163 ~IRk~m~eii~~~~-~~~~l~e~V~~l-------i~~~i~keI~k~~k 202 (245)
.||....+++.+.. .+.++++++..+ +|+++-+|+....+
T Consensus 45 evr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr 92 (101)
T 4dhx_B 45 QLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIR 92 (101)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHH
Confidence 46667777777663 588999998665 77888888766543
No 10
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=18.07 E-value=23 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.3
Q ss_pred eeecCccchhhhhhcCC
Q 025947 217 ILKAPKFDLGKLMEVCP 233 (245)
Q Consensus 217 vlk~Pk~~~~kl~e~~~ 233 (245)
+|+.|.|.+..|-++|+
T Consensus 40 LL~~~~f~~~dls~l~~ 56 (60)
T 1avo_A 40 FLKEPALNEANLSNLKA 56 (60)
T ss_dssp HHHSGGGCCSCTTSSCC
T ss_pred HHcccccccccHHHhcc
Confidence 35688999999999998
Done!