Query 025950
Match_columns 245
No_of_seqs 172 out of 378
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 4.5E-26 1.5E-30 179.4 12.7 92 18-117 6-100 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 3.4E-25 1.2E-29 170.4 12.2 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 5.6E-25 1.9E-29 171.7 12.9 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 6.9E-25 2.4E-29 168.1 11.7 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 1.7E-22 5.9E-27 156.0 11.4 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.9 2E-21 6.7E-26 149.6 10.3 84 17-115 5-88 (89)
7 1vm0_A Unknown protein; struct 99.8 1.4E-18 4.9E-23 141.7 10.4 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 2.1E-17 7.3E-22 136.1 13.5 110 4-114 12-140 (140)
9 3iab_A Ribonucleases P/MRP pro 98.2 2.8E-05 9.7E-10 64.9 12.4 91 21-116 47-146 (158)
10 1b34_A Protein (small nuclear 93.6 0.013 4.3E-07 46.5 0.0 8 103-110 53-60 (119)
11 2ek0_A Stage V sporulation pro 85.7 9.8 0.00034 28.8 11.5 65 19-85 2-71 (90)
12 2k9u_B Filamin-binding LIM pro 47.8 12 0.0004 22.1 2.1 18 101-118 6-23 (26)
13 1i96_V Translation initiation 39.4 90 0.0031 23.1 6.5 70 19-95 3-75 (89)
14 3pam_A Transmembrane protein; 38.0 64 0.0022 26.6 6.1 53 31-86 100-166 (259)
15 2crq_A Mitochondrial translati 37.7 1.2E+02 0.004 23.5 7.1 43 15-58 12-57 (112)
16 1tig_A IF3-C, translation init 27.8 1.1E+02 0.0037 22.9 5.2 44 17-60 6-52 (94)
17 3eua_A Putative fructose-amino 27.4 99 0.0034 27.2 5.9 46 29-74 9-54 (329)
18 3fkj_A Putative phosphosugar i 26.5 1.1E+02 0.0037 27.3 6.0 55 20-74 14-69 (347)
19 1qys_A TOP7; alpha-beta, novel 24.7 1.5E+02 0.005 22.1 5.3 55 20-74 20-74 (106)
20 1lxn_A Hypothetical protein MT 24.6 38 0.0013 25.4 2.2 49 26-75 15-65 (99)
21 3lvu_A ABC transporter, peripl 24.1 89 0.0031 25.7 4.7 57 29-86 97-167 (258)
22 3o6p_A Peptide ABC transporter 23.9 51 0.0018 26.7 3.1 52 33-86 80-139 (229)
23 2r8o_A Transketolase 1, TK 1; 23.9 59 0.002 31.9 4.0 44 45-95 549-592 (669)
24 2wol_A ORF15, clavulanic acid 21.8 2.1E+02 0.007 26.5 7.1 50 33-85 375-427 (562)
25 3ju3_A Probable 2-oxoacid ferr 21.0 1.4E+02 0.0047 22.4 4.8 41 46-93 14-54 (118)
26 3sho_A Transcriptional regulat 20.9 1.8E+02 0.0063 22.5 5.7 37 31-69 27-63 (187)
27 1itz_A Transketolase; calvin c 20.1 58 0.002 32.0 3.1 43 46-95 563-605 (675)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.93 E-value=4.5e-26 Score=179.41 Aligned_cols=92 Identities=35% Similarity=0.518 Sum_probs=84.5
Q ss_pred CCeEEEcCCcchHHHHHHHH-HHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeccccccccc
Q 025950 18 ENEIRITTQGRMRNYITYAT-TLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE 94 (245)
Q Consensus 18 ~NeIrVt~k~~i~~yV~~A~-~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri-~GLh-Q~t~I~sv~i~d~~ePleE 94 (245)
+|+|+|++|+. ++||.+|+ .||++ ++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.|+|+ +
T Consensus 6 ~n~I~V~~k~~-~nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPV-MNYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCH-HHHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCH-HHHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 59999999988 59999999 99994 8999999999999999999999999999 8999 999999999999854 5
Q ss_pred CCCcceeeeeeeeEEEEEecCCC
Q 025950 95 GLLPLETTRHVSMITITLSKKDL 117 (245)
Q Consensus 95 Gl~~~~~~R~Vs~I~ItLsk~~l 117 (245)
|+ ..+|+||+|+|+|+++|.
T Consensus 81 g~---~~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 81 GQ---TRTRRVSSIEICLEKAGE 100 (102)
T ss_dssp SC---EEEEEEEEEEEEEEECSS
T ss_pred Cc---cceeEeeeEEEEEEccCC
Confidence 63 379999999999999875
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.92 E-value=3.4e-25 Score=170.43 Aligned_cols=86 Identities=34% Similarity=0.601 Sum_probs=78.5
Q ss_pred CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeccccccccc
Q 025950 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE 94 (245)
Q Consensus 17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri-~GLh-Q~t~I~sv~i~d~~ePleE 94 (245)
.+|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|+++.| +|
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 57999999998 77999999999995 8999999999999999999999999999 8899 999999988865 35
Q ss_pred CCCcceeeeeeeeEEEEEec
Q 025950 95 GLLPLETTRHVSMITITLSK 114 (245)
Q Consensus 95 Gl~~~~~~R~Vs~I~ItLsk 114 (245)
| .+|+||+|+|+|++
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 5 78999999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=5.6e-25 Score=171.75 Aligned_cols=89 Identities=37% Similarity=0.552 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCC--c-eeeeEEEEEEecccccc
Q 025950 15 PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAG--L-HQNTSIGSTDITDMWEP 91 (245)
Q Consensus 15 p~~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~G--L-hQ~t~I~sv~i~d~~eP 91 (245)
+.++|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+||.+ | ||.++|+|+++.|+
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e--- 80 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ--- 80 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET---
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC---
Confidence 5578999999998 88999999999995 899999999999999999999999999955 8 89999999999873
Q ss_pred cccCCCcceeeeeeeeEEEEEecC
Q 025950 92 LEEGLLPLETTRHVSMITITLSKK 115 (245)
Q Consensus 92 leEGl~~~~~~R~Vs~I~ItLsk~ 115 (245)
|| .+|+||+|+|+|+++
T Consensus 81 --~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 81 --DG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp --TS-----CEEEEEEEEEEEEEC
T ss_pred --CC-----cEEEeeEEEEEEEcC
Confidence 55 789999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.92 E-value=6.9e-25 Score=168.09 Aligned_cols=84 Identities=33% Similarity=0.567 Sum_probs=73.5
Q ss_pred CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEecccccccccC
Q 025950 18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEG 95 (245)
Q Consensus 18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri-~GLh-Q~t~I~sv~i~d~~ePleEG 95 (245)
+|+|+|++| ++.+||.+|+.||++ + ++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|.++.|+ ||
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence 699999999 999999999999996 6 99999999999999999999999999 7799 9999999998873 45
Q ss_pred CCcceeeeeeeeEEEEEec
Q 025950 96 LLPLETTRHVSMITITLSK 114 (245)
Q Consensus 96 l~~~~~~R~Vs~I~ItLsk 114 (245)
.+|+||+|+|+|++
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 68999999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.88 E-value=1.7e-22 Score=155.98 Aligned_cols=89 Identities=34% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCC
Q 025950 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL 96 (245)
Q Consensus 17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl 96 (245)
++|.|+|.+| ++.+||.+++.||++ ++++|+|||+|+||+|||+||||||+||.. .+++++++|.++|.+.++|
T Consensus 3 ~~~vv~vg~K-pv~~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNK-PVMNYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCC-cHHHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence 4689999988 566999999999995 899999999999999999999999999853 4689999999999999998
Q ss_pred CcceeeeeeeeEEEEEecC
Q 025950 97 LPLETTRHVSMITITLSKK 115 (245)
Q Consensus 97 ~~~~~~R~Vs~I~ItLsk~ 115 (245)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 789999999999984
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.86 E-value=2e-21 Score=149.58 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=70.0
Q ss_pred CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCC
Q 025950 17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL 96 (245)
Q Consensus 17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl 96 (245)
++|+|+|+++ ++.|||.+|+.||++ ++++|+|||+|+||+|||+||||||+||.++||+.+ +++.++ +
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~---i~i~se-----~-- 72 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVN---VQTGSE-----V-- 72 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEE---EEEEEE-----E--
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEE---EEeccc-----c--
Confidence 4577777766 888999999999995 899999999999999999999999999988765544 344322 1
Q ss_pred CcceeeeeeeeEEEEEecC
Q 025950 97 LPLETTRHVSMITITLSKK 115 (245)
Q Consensus 97 ~~~~~~R~Vs~I~ItLsk~ 115 (245)
..+|+||+|+|+|+++
T Consensus 73 ---~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ---RDRRRISYILLRLKRV 88 (89)
T ss_dssp ---ETTEEEEEEEEEEEEC
T ss_pred ---CcceEeeeEEEEEEec
Confidence 3679999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.77 E-value=1.4e-18 Score=141.71 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=72.8
Q ss_pred CCCCCeEEEcC-CcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccc
Q 025950 15 PINENEIRITT-QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLE 93 (245)
Q Consensus 15 p~~~NeIrVt~-k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePle 93 (245)
+.++|+|+|+. +.++++||.+|+.+|+ ++++|+|||||+||++||+||||||+|+-..++.+.|+++++.++
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 34689999996 4788899999999998 589999999999999999999999999766667777788887653
Q ss_pred cCCCcceeeeeeeeEEEEEecCC
Q 025950 94 EGLLPLETTRHVSMITITLSKKD 116 (245)
Q Consensus 94 EGl~~~~~~R~Vs~I~ItLsk~~ 116 (245)
++ ....++|.|+|+|.+.+
T Consensus 90 ~~----~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 90 AR----GRPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred CC----CcccccceEEEEEEecC
Confidence 11 14456799999999864
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.1e-17 Score=136.10 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=89.1
Q ss_pred ceeccCCCCCCCCC----CCeEEEcCCcchHHHHHHHHHHHhhc---CCCeEEEEEcChhHHHHHHHHHHHHHHhCCcee
Q 025950 4 YQRVEKPKAEAPIN----ENEIRITTQGRMRNYITYATTLLQEK---GSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQ 76 (245)
Q Consensus 4 Y~rV~kp~~~~p~~----~NeIrVt~k~~i~~yV~~A~~lL~~~---g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ 76 (245)
.+.+.++.+..|.. +|+|+|+++++|...|..|.+||++- +.++|+|||||+||.|||+||..|+++. ++.-
T Consensus 12 ~k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V 90 (140)
T 3iab_B 12 TKRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKI 90 (140)
T ss_dssp --CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCE
T ss_pred CCccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEE
Confidence 45566665566654 89999999999999999999999751 6899999999999999999999999974 6888
Q ss_pred eeEEEEEEecccccccccC------------CCcceeeeeeeeEEEEEec
Q 025950 77 NTSIGSTDITDMWEPLEEG------------LLPLETTRHVSMITITLSK 114 (245)
Q Consensus 77 ~t~I~sv~i~d~~ePleEG------------l~~~~~~R~Vs~I~ItLsk 114 (245)
.+.++||.+.|+++|.++. .+...++|+||+|||.|+.
T Consensus 91 ~V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy~ 140 (140)
T 3iab_B 91 EVYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIYV 140 (140)
T ss_dssp EEEEEEEEEEEECC--------------------CEEEEEEEEEEEEEEC
T ss_pred EEEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEeC
Confidence 8999999999999998765 5678999999999999863
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.8e-05 Score=64.93 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=69.9
Q ss_pred EEEcCCcchHHHHHHHHHHHhh-----cCCCeEEEEEcChhHHHHHHHHHHHHHHh----CCceeeeEEEEEEecccccc
Q 025950 21 IRITTQGRMRNYITYATTLLQE-----KGSNEIVLKAMGRAINKTVMIAELIKRRI----AGLHQNTSIGSTDITDMWEP 91 (245)
Q Consensus 21 IrVt~k~~i~~yV~~A~~lL~~-----~g~~eVvIka~G~AIsKAV~vAEILKrri----~GLhQ~t~I~sv~i~d~~eP 91 (245)
+.|++...|+..|+.-.++|+. ...+.|.|.+.|..|.|+|++.||+|..+ +.|||++++.+.....+
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~--- 123 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKRE--- 123 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCc---
Confidence 4499999999999999998851 24689999999999999999999999987 24999999998865432
Q ss_pred cccCCCcceeeeeeeeEEEEEecCC
Q 025950 92 LEEGLLPLETTRHVSMITITLSKKD 116 (245)
Q Consensus 92 leEGl~~~~~~R~Vs~I~ItLsk~~ 116 (245)
.-.. -+++.-+||-+-+.+++++
T Consensus 124 grNE--Lle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 124 GRNE--LQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp -------CCCCEEEEEEEEEEESSS
T ss_pred cccH--HHHhhcCCCEEEEEEeccc
Confidence 1111 1455668888888888764
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=93.60 E-value=0.013 Score=46.49 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.8
Q ss_pred eeeeeEEE
Q 025950 103 RHVSMITI 110 (245)
Q Consensus 103 R~Vs~I~I 110 (245)
+++..|.|
T Consensus 53 ~~lg~v~I 60 (119)
T 1b34_A 53 VQLETLSI 60 (119)
T ss_dssp EEEEEEEE
T ss_pred eEcceEEE
Confidence 44444444
No 11
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=85.74 E-value=9.8 Score=28.82 Aligned_cols=65 Identities=18% Similarity=0.359 Sum_probs=42.8
Q ss_pred CeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHHhC--C--ceeeeEEEEEEe
Q 025950 19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAINKTVMIAELIKRRIA--G--LHQNTSIGSTDI 85 (245)
Q Consensus 19 NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G-~AIsKAV~vAEILKrri~--G--LhQ~t~I~sv~i 85 (245)
+.+.|+++++-...-...-.+|.+ ...|.|.|+| .|++.||.-.-|-+.-+. | |..+-.+..+++
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~PaF~~v~i 71 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLEL 71 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEEE
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeeeeEEEee
Confidence 468899998885544444446765 3599999999 789988876665555542 3 433344444444
No 12
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=47.79 E-value=12 Score=22.07 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=13.9
Q ss_pred eeeeeeeEEEEEecCCCC
Q 025950 101 TTRHVSMITITLSKKDLD 118 (245)
Q Consensus 101 ~~R~Vs~I~ItLsk~~lD 118 (245)
.+|.+|+|.|||..--.|
T Consensus 6 eKR~aSSvFITLapp~r~ 23 (26)
T 2k9u_B 6 EKRVASSVFITLAPPRRD 23 (26)
T ss_dssp SSSCEEEEEEEECCSSCC
T ss_pred hhheeeeEEEEecCcccc
Confidence 469999999999864333
No 13
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=39.40 E-value=90 Score=23.13 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=41.3
Q ss_pred CeEEEcCCc---chHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccC
Q 025950 19 NEIRITTQG---RMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG 95 (245)
Q Consensus 19 NeIrVt~k~---~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEG 95 (245)
.||+++.+. ++.-=+..|.++|++...-.|+|+=.|+.|...=.-.++|.+-...|. .+.+++. .|..||
T Consensus 3 KEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~---d~~~ve~----~pk~eG 75 (89)
T 1i96_V 3 KSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLK---DLAVVEM----KPEMLG 75 (89)
T ss_pred eEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhh---hheEEec----CccccC
Confidence 367777654 444446778889987556678888889887644333344433333332 3444432 466667
No 14
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=37.96 E-value=64 Score=26.60 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCC--------------eEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEec
Q 025950 31 NYITYATTLLQEKGSN--------------EIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDIT 86 (245)
Q Consensus 31 ~yV~~A~~lL~~~g~~--------------eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~ 86 (245)
.=+..|.+||.+.+.+ +|.|.... .....+||+|+..++.+--.++|..++..
T Consensus 100 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~---~~~~~~a~~iq~~l~~iGI~v~i~~~~~~ 166 (259)
T 3pam_A 100 LNAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQS---LEEEKVALAFQSNLSRLGIHAEIRTVDDS 166 (259)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESS---HHHHHHHHHHHHHHHTTTCEEEEEECCHH
T ss_pred cCHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCC---chHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 3478899999875543 45555432 45567888888887655444566655533
No 15
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.72 E-value=1.2e+02 Score=23.46 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=32.6
Q ss_pred CCCCCeEEEcCCcchHHH---HHHHHHHHhhcCCCeEEEEEcChhHH
Q 025950 15 PINENEIRITTQGRMRNY---ITYATTLLQEKGSNEIVLKAMGRAIN 58 (245)
Q Consensus 15 p~~~NeIrVt~k~~i~~y---V~~A~~lL~~~g~~eVvIka~G~AIs 58 (245)
.+.-.||+++.+..-++| +..|..+|++...=.|+|+ .|+.|.
T Consensus 12 ~~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~ 57 (112)
T 2crq_A 12 PTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAE 57 (112)
T ss_dssp CSCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCS
T ss_pred CceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCcccc
Confidence 345579999988666665 5668888987556678899 999887
No 16
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=27.77 E-value=1.1e+02 Score=22.90 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=32.2
Q ss_pred CCCeEEEcCCcchHHH---HHHHHHHHhhcCCCeEEEEEcChhHHHH
Q 025950 17 NENEIRITTQGRMRNY---ITYATTLLQEKGSNEIVLKAMGRAINKT 60 (245)
Q Consensus 17 ~~NeIrVt~k~~i~~y---V~~A~~lL~~~g~~eVvIka~G~AIsKA 60 (245)
.-.||+++.+..-++| +..|..+|++...=.|+|+-.|+.|...
T Consensus 6 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~ 52 (94)
T 1tig_A 6 NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHK 52 (94)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHH
T ss_pred eeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCH
Confidence 4468999888666665 5668888987555678888889887654
No 17
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=27.41 E-value=99 Score=27.18 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCc
Q 025950 29 MRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGL 74 (245)
Q Consensus 29 i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GL 74 (245)
.+..|..++++|.+...+.|+|.|.|.+-.-|..++-.|.+...++
T Consensus 9 ~~~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~ 54 (329)
T 3eua_A 9 VNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSI 54 (329)
T ss_dssp SCHHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCC
Confidence 4577888999998656899999999988766665555555433244
No 18
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=26.53 E-value=1.1e+02 Score=27.28 Aligned_cols=55 Identities=4% Similarity=-0.016 Sum_probs=39.5
Q ss_pred eEEEcCCcchHHHHHHHHHHHh-hcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCc
Q 025950 20 EIRITTQGRMRNYITYATTLLQ-EKGSNEIVLKAMGRAINKTVMIAELIKRRIAGL 74 (245)
Q Consensus 20 eIrVt~k~~i~~yV~~A~~lL~-~~g~~eVvIka~G~AIsKAV~vAEILKrri~GL 74 (245)
.++.|.+.--...|..++.+|. ++..+.|+|.|+|.+-.-|..++-.|.+-..++
T Consensus 14 ~~~~t~~~l~~~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~ 69 (347)
T 3fkj_A 14 NLYFQGMSVAHENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKL 69 (347)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSC
T ss_pred hhhHHHhhcCHHHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCC
Confidence 3566666667788999999887 556899999999988766655555555433244
No 19
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=24.69 E-value=1.5e+02 Score=22.12 Aligned_cols=55 Identities=13% Similarity=0.293 Sum_probs=46.1
Q ss_pred eEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCc
Q 025950 20 EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGL 74 (245)
Q Consensus 20 eIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GL 74 (245)
.-.||..+.+...+...+..+.+.+.+.|.|+-.-+.-..|-..|-||-.-|..|
T Consensus 20 tytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfael 74 (106)
T 1qys_A 20 TYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHh
Confidence 4568888899999999999888778999999888888888888999988887644
No 20
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=24.56 E-value=38 Score=25.38 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=33.1
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHH--HHHHHHHHHHHhCCce
Q 025950 26 QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINK--TVMIAELIKRRIAGLH 75 (245)
Q Consensus 26 k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsK--AV~vAEILKrri~GLh 75 (245)
...+..||..|+++|++.+. ...+++||-.|.= .=.|-++||+-+.-+|
T Consensus 15 ~~svs~~Va~~i~~i~~sgl-~y~~~pm~T~iEG~e~devm~vv~~~~e~~~ 65 (99)
T 1lxn_A 15 STSLSSYVAAAVEALKKLNV-RYEISGMGTLLEAEDLDELMEAVKAAHEAVL 65 (99)
T ss_dssp SSCCHHHHHHHHHHHTTSSC-EEEEETTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCC-CeEeCCCeeEEECCCHHHHHHHHHHHHHHHH
Confidence 35889999999999987555 5688898866552 3444455555443344
No 21
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=24.06 E-value=89 Score=25.67 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhhcCCC--------------eEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEec
Q 025950 29 MRNYITYATTLLQEKGSN--------------EIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDIT 86 (245)
Q Consensus 29 i~~yV~~A~~lL~~~g~~--------------eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~ 86 (245)
...=+..|.+||.+.+.+ ++.|..... ......+|++|+..++.+--.++|..++-.
T Consensus 97 ~~~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~-~~~~~~~a~~iq~~l~~iGi~v~i~~~~~~ 167 (258)
T 3lvu_A 97 NRTNLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQG-DSDMQTVLEIYTRALERLGIAAQIEKVDNA 167 (258)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETT-CHHHHHHHHHHHHHHHTTTCCCEEEEECHH
T ss_pred ccCCHHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCC-ChhHHHHHHHHHHHHHHcCCeeEEEecCHH
Confidence 334478999999875542 454543321 234456778888777544444566666543
No 22
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=23.89 E-value=51 Score=26.65 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHHHHhhc----CCC--eEEEEEcChhHHHHHHHHHHHHHHhCC-c-eeeeEEEEEEec
Q 025950 33 ITYATTLLQEK----GSN--EIVLKAMGRAINKTVMIAELIKRRIAG-L-HQNTSIGSTDIT 86 (245)
Q Consensus 33 V~~A~~lL~~~----g~~--eVvIka~G~AIsKAV~vAEILKrri~G-L-hQ~t~I~sv~i~ 86 (245)
+..|..||.+. +.+ +|+|..... .....+|++|+..++. + --.++|..++..
T Consensus 80 ~~kAk~LL~eaG~~~g~~~l~l~l~~~~~--~~~~~~a~~i~~~l~~~i~GI~v~i~~~~~~ 139 (229)
T 3o6p_A 80 TKKAKEYWEKAKKELGISTLTMDILSSDA--DSSKKTVEFVQGSIQDALDGVKVTVSPVPFS 139 (229)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEEEECS--HHHHHHHHHHHHHHHHHSTTEEEEEEEECHH
T ss_pred HHHHHHHHHHcCcccCCCceEEEEEeCCC--hHHHHHHHHHHHHHHHhCCCcEEEEEecCHH
Confidence 57889999763 322 566654332 2345677777776544 4 334556555533
No 23
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=23.88 E-value=59 Score=31.94 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccC
Q 025950 45 SNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG 95 (245)
Q Consensus 45 ~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEG 95 (245)
.+.|+|-|.|..+..|+..|++|+.. |+ ++.-|++.+ +.|+++.
T Consensus 549 ~~dv~iva~G~~v~~al~Aa~~L~~~--Gi----~~~Vv~~~~-~~pld~~ 592 (669)
T 2r8o_A 549 QPELIFIATGSEVELAVAAYEKLTAE--GV----KARVVSMPS-TDAFDKQ 592 (669)
T ss_dssp SCSEEEEECGGGHHHHHHHHHHHHHH--TC----CEEEEECSC-HHHHHTS
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHhc--CC----CeEEEEecc-CCccccc
Confidence 36899999999999999999999887 55 333344332 3566543
No 24
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=21.85 E-value=2.1e+02 Score=26.51 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCC---eEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEe
Q 025950 33 ITYATTLLQEKGSN---EIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDI 85 (245)
Q Consensus 33 V~~A~~lL~~~g~~---eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i 85 (245)
+..|.+||.+.+.. ++.|.-..... . .+||+|+..++.+--.++|..++.
T Consensus 375 ~~kAk~LL~eAG~~~g~~l~l~~~~~~~--~-~~a~~iq~~l~~iGI~v~i~~~~~ 427 (562)
T 2wol_A 375 LDAARAELAAAGLPDGFRAVIGTQRGKF--R-LVADAVVESLARVGIELTVKELDV 427 (562)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEEEESSHH--H-HHHHHHHHHHHTTTEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecCChH--H-HHHHHHHHHHHHcCceeEEEecCH
Confidence 67899999976642 56665554332 2 788888888765443455555543
No 25
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=21.02 E-value=1.4e+02 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=29.8
Q ss_pred CeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccc
Q 025950 46 NEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLE 93 (245)
Q Consensus 46 ~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePle 93 (245)
.+|.|-++|.....|..+++.|+.. |+ ++.-+++..- .|++
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~~~--Gi----~v~vi~~r~~-~P~d 54 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLKEE--GI----SANLLYLKMF-SPFP 54 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHHHT--TC----CEEEEEECSS-CSCC
T ss_pred CCEEEEEECccHHHHHHHHHHHHHC--CC----ceEEEEECeE-ecCC
Confidence 5799999999999999999999875 44 3444444433 3554
No 26
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.86 E-value=1.8e+02 Score=22.45 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHH
Q 025950 31 NYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69 (245)
Q Consensus 31 ~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKr 69 (245)
..+..+..+|.+ .+.|+|.|+|..-.-|..++..|.+
T Consensus 27 ~~l~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~ 63 (187)
T 3sho_A 27 EAIEAAVEAICR--ADHVIVVGMGFSAAVAVFLGHGLNS 63 (187)
T ss_dssp HHHHHHHHHHHH--CSEEEEECCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCEEEEEecCchHHHHHHHHHHHHh
Confidence 456777888875 5899999999988777777777754
No 27
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=20.14 E-value=58 Score=32.05 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=32.1
Q ss_pred CeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccC
Q 025950 46 NEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG 95 (245)
Q Consensus 46 ~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEG 95 (245)
+.|+|-|.|..+..|+..|++|+.. |+ ++.-|++. .+.|+++.
T Consensus 563 ~dv~iva~G~~v~~al~Aa~~L~~~--Gi----~v~Vv~~~-~~~pld~~ 605 (675)
T 1itz_A 563 PDLIVMGTGSELEIAAKAADELRKE--GK----TVRVVSFV-SWELFDEQ 605 (675)
T ss_dssp CSEEEEECGGGHHHHHHHHHHHHHT--TC----CEEEEECS-CHHHHHTS
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhc--CC----cEEEEEec-cCcccccc
Confidence 6899999999999999999999875 55 34434443 24566544
Done!