BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025951
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 84 GSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEG 130
S TK+ P ++S+PV I+ PF GK C ++LV+EG
Sbjct: 97 ASSTKIVHPKTTDTSVPVNIYRPKTPFLGK------CIENYELVDEG 137
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 11 GLQLPKFKSSNCGFLSHQFVSPSASQ 36
G L + S+N G+L HQF+SPS++Q
Sbjct: 175 GFDLVELHSAN-GYLLHQFLSPSSNQ 199
>pdb|2JIO|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIQ|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V3V|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 21 NCGFLSHQFVSPSASQFGSRSQS-----IRFGNAYKFL---GNTFPNLKHKIEGYSAWSS 72
N ++ Q P A+ F Q +R G A L G PN KH+ E W
Sbjct: 325 NLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGL 384
Query: 73 KRGAI 77
G I
Sbjct: 385 PEGRI 389
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
pdb|2JIM|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIP|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIR|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V45|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 21 NCGFLSHQFVSPSASQFGSRSQS-----IRFGNAYKFL---GNTFPNLKHKIEGYSAWSS 72
N ++ Q P A+ F Q +R G A L G PN KH+ E W
Sbjct: 325 NLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGL 384
Query: 73 KRGAI 77
G I
Sbjct: 385 PEGRI 389
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.3 bits (59), Expect = 8.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 56 TFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSL 99
T +KH+ Y +SKRG ILC T + + NSSL
Sbjct: 1250 TIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1293
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.3 bits (59), Expect = 8.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 56 TFPNLKHKIEGYSAWSSKRGAILCASNSGSDTKLGFPSGENSSL 99
T +KH+ Y +SKRG ILC T + + NSSL
Sbjct: 1031 TIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1074
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,469,882
Number of Sequences: 62578
Number of extensions: 311181
Number of successful extensions: 584
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 9
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)