Query 025951
Match_columns 245
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 11:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02790 COX2_TM: Cytochrome C 55.5 2.6 5.7E-05 30.2 -0.9 24 141-164 61-84 (84)
2 MTH00154 COX2 cytochrome c oxi 24.8 71 0.0015 28.3 2.9 41 141-181 60-100 (227)
3 MTH00023 COX2 cytochrome c oxi 21.2 80 0.0017 28.2 2.5 41 141-181 69-109 (240)
4 TIGR02866 CoxB cytochrome c ox 20.7 63 0.0014 27.6 1.7 44 138-181 52-96 (201)
5 MTH00168 COX2 cytochrome c oxi 19.8 68 0.0015 28.3 1.7 41 141-181 60-100 (225)
6 MTH00038 COX2 cytochrome c oxi 18.8 71 0.0015 28.3 1.7 41 141-181 60-100 (229)
7 MTH00008 COX2 cytochrome c oxi 17.3 94 0.002 27.6 2.1 42 140-181 59-100 (228)
8 PF04654 DUF599: Protein of un 16.9 31 0.00067 30.2 -1.0 27 143-169 182-210 (216)
9 MTH00051 COX2 cytochrome c oxi 16.5 1.3E+02 0.0027 26.9 2.7 41 141-181 62-102 (234)
10 MTH00098 COX2 cytochrome c oxi 16.0 78 0.0017 28.1 1.2 41 141-181 60-100 (227)
No 1
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=55.51 E-value=2.6 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=21.3
Q ss_pred CcceEEeehhHHHHhHhccchhhh
Q 025951 141 KGSFLWILAPVVLISSLILPQMFL 164 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyL 164 (245)
.--+.|-+.|++++..+.+|+++|
T Consensus 61 ~lE~~WTiiP~iiLl~l~~pSl~l 84 (84)
T PF02790_consen 61 KLEIIWTIIPAIILLFLAFPSLKL 84 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHhhhccC
Confidence 356789999999999999999976
No 2
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.78 E-value=71 Score=28.31 Aligned_cols=41 Identities=15% Similarity=0.470 Sum_probs=31.2
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
.--+.|-+.|++++..+.+|++.+-...+..-++.+-.+++
T Consensus 60 ~lEiiWTviP~iiL~~l~~ps~~~l~~~~~~~~~~l~IkV~ 100 (227)
T MTH00154 60 EIEIIWTILPAIILIFIALPSLRLLYLLDEVNNPSITLKTI 100 (227)
T ss_pred hhheEeEehHHHHHHHHHHHHHHHHHhccccccccceeEEe
Confidence 45689999999999999999998766666554444444666
No 3
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.23 E-value=80 Score=28.22 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=31.0
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
.--+.|-+.|++++..+.+|++.+-...+..-++.+-.|++
T Consensus 69 ~lEi~WTviP~iiL~~l~~~s~~~ly~~~~~~~~~~~IkV~ 109 (240)
T MTH00023 69 FLEIVWTIIPAVILVFIALPSLKLLYLMDEVVSPALTIKAI 109 (240)
T ss_pred chheeeehHHHHHHHHHHHHHHHHHHhcccccccccceEEe
Confidence 45678999999999999999997766666554555444665
No 4
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=20.70 E-value=63 Score=27.55 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=26.5
Q ss_pred cCCCcceEEeehhH-HHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 138 QEDKGSFLWILAPV-VLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 138 ~~~~~SlLW~lGP~-vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
+..+--+.|.+.|+ ++++.+++|...+..+-+..=+|.+-.|++
T Consensus 52 ~~~~lEi~wtiiP~vivl~l~~~~~~~~~~~~~~~~~~~~~i~v~ 96 (201)
T TIGR02866 52 GNRALEYTWTVIPLIIVVGLIAATVLGTLYLERPPPEDALKVKVE 96 (201)
T ss_pred CCceEEEEeehHhHHHheeEehHHHHHHHHhcccCCCCCEEEEEE
Confidence 44566789999995 455566666655555544433444444555
No 5
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=19.78 E-value=68 Score=28.28 Aligned_cols=41 Identities=27% Similarity=0.560 Sum_probs=31.9
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
+--+.|.+.|++++..+.+|++.+=...+..-+|.+-.+++
T Consensus 60 ~lEi~WtviP~iil~~l~~~s~~~l~~~~~~~~~~~~ikv~ 100 (225)
T MTH00168 60 MIEFVWTIIPAFILISLALPSLRLLYLMDEIDKPDLTIKAV 100 (225)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcccceeeEEe
Confidence 45678999999999999999998766666665665555666
No 6
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=18.83 E-value=71 Score=28.29 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=31.2
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
.--+.|.+.|++++..+.+|++.+=-..+..-++.+-.+++
T Consensus 60 ~lEi~WTiiP~iil~~l~~~s~~~ly~~~~~~~~~l~ikvi 100 (229)
T MTH00038 60 ELETIWTIVPAFILIFIALPSLQLLYLMDEVNNPFLTIKAI 100 (229)
T ss_pred hHHhhHhHHHHHHHHHHHHHHHHHHHhhhhhcccceeEEEE
Confidence 45679999999999999999998766666655444444766
No 7
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=17.29 E-value=94 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.430 Sum_probs=31.3
Q ss_pred CCcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 140 DKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
.+-.+.|-+.|++++..+.+|++.+=...+..-++.+-.+++
T Consensus 59 ~~lE~iWTviP~~il~~l~~ps~~~ly~~~~~~~~~ltikv~ 100 (228)
T MTH00008 59 QQIETIWTILPALILLFLAFPSLRLLYLMDEVSNPSITLKTI 100 (228)
T ss_pred ceeeeeeehHHHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 345689999999999999999998766555554555444665
No 8
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=16.94 E-value=31 Score=30.21 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=18.7
Q ss_pred ceEEeehhHHHHhHh--ccchhhhhHHHH
Q 025951 143 SFLWILAPVVLISSL--ILPQMFLGNVIE 169 (245)
Q Consensus 143 SlLW~lGP~vLVASf--ilP~lyLrkvie 169 (245)
-++|++||.+++++- ++.-+|-|..-+
T Consensus 182 ~l~W~~gP~~~~~~t~~vv~~L~~rdf~S 210 (216)
T PF04654_consen 182 LLLWFFGPWALIAATVLVVAVLYRRDFRS 210 (216)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 478999999887654 455666655444
No 9
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=16.54 E-value=1.3e+02 Score=26.90 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=30.2
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
+--+.|-+.|++++..+.+|++.+=...+..-++.+-.+++
T Consensus 62 ~lEiiWTviP~iiL~~l~~~s~~~ly~~~~~~~~~l~ikv~ 102 (234)
T MTH00051 62 LIEIIWTLIPAAILIFIAFPSLKLLYLMDEVIDPALTIKAI 102 (234)
T ss_pred eeeeeeeeHHHHHHHHHHHHHHHHHHhcccCcccccceeEE
Confidence 45689999999999999999997766555554444433555
No 10
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=15.96 E-value=78 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.441 Sum_probs=31.6
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
+--+.|-+.|++++..+.+|++.+-...+..-++.+-.+++
T Consensus 60 ~lE~~WTviP~iil~~l~~~s~~~l~~~~~~~~~~l~Ikv~ 100 (227)
T MTH00098 60 EVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTM 100 (227)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhccccceEEEEE
Confidence 34678999999999999999998877776654444444666
Done!