Query 025951
Match_columns 245
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 21:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yev_B Cytochrome C oxidase su 23.4 25 0.00087 30.9 0.0 41 141-181 82-122 (337)
2 2gsm_B Cytochrome C oxidase su 17.8 25 0.00085 30.5 -0.2 40 142-181 75-114 (262)
3 3p9y_A CG14216, LD40846P; phos 15.5 65 0.0022 27.9 1.9 15 72-86 9-23 (198)
4 1v54_B Cytochrome C oxidase po 14.0 35 0.0012 29.0 -0.2 41 141-181 60-100 (227)
5 3hb3_B Cytochrome C oxidase su 11.2 49 0.0017 29.5 -0.2 41 141-181 105-146 (298)
6 2cmg_A Spermidine synthase; tr 9.3 1.1E+02 0.0037 25.5 1.3 29 145-174 234-262 (262)
7 3c2q_A Uncharacterized conserv 9.2 99 0.0034 28.9 1.1 42 140-184 134-184 (345)
8 4h3k_B RNA polymerase II subun 8.5 1.1E+02 0.0037 26.9 1.0 14 73-86 26-39 (214)
9 2i7c_A Spermidine synthase; tr 8.4 1.2E+02 0.004 25.2 1.1 24 146-170 259-282 (283)
10 2o07_A Spermidine synthase; st 6.7 1.8E+02 0.0061 24.6 1.5 25 145-170 278-302 (304)
No 1
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=23.41 E-value=25 Score=30.94 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=32.2
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
.--++|.+.|++++..+.+|++.+-..++..-++.+-.|++
T Consensus 82 ~lE~~wt~~P~~il~~l~~~s~~~~~~~~~~~~~~~~i~v~ 122 (337)
T 2yev_B 82 RLEVVWTLIPLAIVFVLFGLTAKALIQVNRPIPGAMKVEVT 122 (337)
Confidence 45689999999999999999997776666665555555665
No 2
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=17.83 E-value=25 Score=30.51 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=30.2
Q ss_pred cceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 142 GSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 142 ~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
--++|-+.|++++..+.+|++.+-..++..-++.+-.+++
T Consensus 75 lEiiWTiiP~iILi~la~pS~~~ly~~~~~~~~~ltIkVi 114 (262)
T 2gsm_B 75 LEIAWTIVPIVILVAIGAFSLPVLFNQQEIPEADVTVKVT 114 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEEE
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHhccccCCCceEEEE
Confidence 3578999999999999999987766666654444444666
No 3
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=15.53 E-value=65 Score=27.95 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=12.1
Q ss_pred cccceeEeecCCCCC
Q 025951 72 SKRGAILCASNSGSD 86 (245)
Q Consensus 72 ~~r~~~~css~s~~d 86 (245)
.-|-+++||||+|+-
T Consensus 9 ~l~~avVCaSN~NRS 23 (198)
T 3p9y_A 9 KLAVAVVDSSNMNRS 23 (198)
T ss_dssp CCEEEEEESSSSSHH
T ss_pred CceEEEEcCCCCccc
Confidence 368899999999753
No 4
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=14.01 E-value=35 Score=29.00 Aligned_cols=41 Identities=12% Similarity=0.441 Sum_probs=30.0
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchheeee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLTEAl 181 (245)
.--++|-+.|++++..+.+|++.+-...+..-++.+-.+++
T Consensus 60 ~lEiiWTiiP~iil~~la~ps~~~ly~~d~~~~~~ltikv~ 100 (227)
T 1v54_B 60 EVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTM 100 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSEEEEEE
T ss_pred eeEEeeehHHHHHHHHHHHHHHHHHHhhccccccceEEEEE
Confidence 34578999999999999999987665555544444444665
No 5
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=11.21 E-value=49 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.6
Q ss_pred CcceEEeehhHHHHhHhccchhhhhHHHHHHhccchhe-eee
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLM-EAI 181 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLT-EAl 181 (245)
.--++|-+.|++++..+.+|++.+-...+..-+|.-+| |++
T Consensus 105 ~LEiiWTiiP~iILi~La~pSl~~ly~~~e~~~~~~ltIkVi 146 (298)
T 3hb3_B 105 PIEVIWTLVPVLILVAIGAFSLPILFRSQEMPNDPDLVIKAI 146 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSEEEEEE
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHhhhhcccccCCceEEEEE
Confidence 34578999999999999999998766666555344444 665
No 6
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=9.31 E-value=1.1e+02 Score=25.48 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.0
Q ss_pred EEeehhHHHHhHhccchhhhhHHHHHHhcc
Q 025951 145 LWILAPVVLISSLILPQMFLGNVIEDFIKD 174 (245)
Q Consensus 145 LW~lGP~vLVASfilP~lyLrkvieavfeD 174 (245)
+...-|-+..|+|.+|. |+++.++.+.++
T Consensus 234 ~~~y~~~~h~~~f~lp~-~~~~~l~~~~~~ 262 (262)
T 2cmg_A 234 VRYYNEDIHRAAFALPK-NLQEVFKDNIKS 262 (262)
T ss_dssp CSSCCHHHHHHTTCCCH-HHHHHGGGTCBC
T ss_pred CcEECHHHHHHHcCCCH-HHHHHHHHHhcC
Confidence 36788999999999998 567777766553
No 7
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=9.22 E-value=99 Score=28.85 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=26.8
Q ss_pred CCcceEEeehhHHHHhHhccchhhhhHHHHHHhccchhe---------eeeeee
Q 025951 140 DKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLM---------EAIFTI 184 (245)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyLrkvieavfeDslLT---------EAlFY~ 184 (245)
..|.++|++||+|. = ------|-+.|++=+=|-||. |.-+|.
T Consensus 134 ~gG~Iv~V~GPAvv-h--tga~~ala~LIr~GYV~~LlaGNAlAtHDiE~~l~g 184 (345)
T 3c2q_A 134 GTGGIAIVGGPAII-H--TGGGPALAKMVELGYIQAILAGNALATHDIESALYG 184 (345)
T ss_dssp SSCCEEEEECTHHH-H--TTCHHHHHHHHHTTCCSEEEEEHHHHHHHHHHHHHS
T ss_pred CCCeEEEEecCeEe-c--CCcHHHHHHHHHcCccceEeccchHhHhhHHHHhhc
Confidence 48999999999986 2 222233455555555566665 666666
No 8
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=8.46 E-value=1.1e+02 Score=26.88 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=11.3
Q ss_pred ccceeEeecCCCCC
Q 025951 73 KRGAILCASNSGSD 86 (245)
Q Consensus 73 ~r~~~~css~s~~d 86 (245)
=|-+++||||+|+-
T Consensus 26 Lr~avVCaSN~NRS 39 (214)
T 4h3k_B 26 LRVAVVSSSNQNRS 39 (214)
T ss_dssp CEEEEEESSSSSHH
T ss_pred CeEEEECCCCcchh
Confidence 56789999999753
No 9
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=8.36 E-value=1.2e+02 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.9
Q ss_pred EeehhHHHHhHhccchhhhhHHHHH
Q 025951 146 WILAPVVLISSLILPQMFLGNVIED 170 (245)
Q Consensus 146 W~lGP~vLVASfilP~lyLrkviea 170 (245)
...-|-+..|+|.+|. |+++.++.
T Consensus 259 ~~~~~~~~~~~f~~p~-~~~~~~~~ 282 (283)
T 2i7c_A 259 KYYNYENHSAAFKLPA-FLLKEIEN 282 (283)
T ss_dssp SSCCHHHHHHTTCCCH-HHHHHHTT
T ss_pred ceECHHHHHHHhcCcH-HHHHHhhc
Confidence 7889999999999999 78887753
No 10
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=6.71 E-value=1.8e+02 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.2
Q ss_pred EEeehhHHHHhHhccchhhhhHHHHH
Q 025951 145 LWILAPVVLISSLILPQMFLGNVIED 170 (245)
Q Consensus 145 LW~lGP~vLVASfilP~lyLrkviea 170 (245)
+...-|-+..|+|.||. |+++.++.
T Consensus 278 ~~~y~~~~h~~~f~lp~-~~~~~~~~ 302 (304)
T 2o07_A 278 LKYYNSDVHRAAFVLPE-FARKALND 302 (304)
T ss_dssp CSSCCHHHHHHTTCCCH-HHHHHHHC
T ss_pred CeEECHHHHHHHhcCcH-HHHHHhhc
Confidence 46788999999999999 78887763
Done!