Query 025951
Match_columns 245
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 21:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025951.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025951hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 18.8 8.2 0.0006 26.8 -0.8 24 141-164 70-93 (100)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 17.5 11 0.00082 25.9 -0.3 26 138-163 58-83 (91)
3 d1v54b2 f.17.2.1 (B:1-90) Mito 12.5 14 0.0011 25.4 -0.9 26 141-166 60-85 (90)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.8 16 0.0012 25.7 -0.8 25 140-164 75-99 (107)
5 d2ds5a1 g.39.1.11 (A:11-48) Cl 11.0 28 0.002 21.4 0.2 16 118-135 5-20 (38)
6 d1awwa_ b.34.2.1 (A:) Bruton's 10.9 1E+02 0.0076 19.3 3.2 19 78-96 14-32 (67)
7 d1xj5a_ c.66.1.17 (A:) Spermid 8.0 62 0.0046 25.9 1.3 23 146-169 268-290 (290)
8 d1nbja_ g.3.3.2 (A:) Cycloviol 7.4 34 0.0025 20.4 -0.5 13 222-234 9-21 (30)
9 d1io2a_ c.55.3.1 (A:) Class II 6.3 40 0.0029 25.4 -0.7 30 147-177 14-43 (213)
10 d1jnya1 b.43.3.1 (A:228-322) E 5.9 1.2E+02 0.0088 20.2 1.8 21 63-83 71-91 (95)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.83 E-value=8.2 Score=26.82 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.7
Q ss_pred CcceEEeehhHHHHhHhccchhhh
Q 025951 141 KGSFLWILAPVVLISSLILPQMFL 164 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyL 164 (245)
+--++|-+.|++++..+.+|++-+
T Consensus 70 ~LEiiWTviP~lILi~l~~pS~~~ 93 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIGAFSLPV 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999853
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=17.54 E-value=11 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=20.5
Q ss_pred cCCCcceEEeehhHHHHhHhccchhh
Q 025951 138 QEDKGSFLWILAPVVLISSLILPQMF 163 (245)
Q Consensus 138 ~~~~~SlLW~lGP~vLVASfilP~ly 163 (245)
+..+=-+.|-+.|++++..+-.|.+-
T Consensus 58 ~n~~lEi~WtiIP~iil~~iav~s~~ 83 (91)
T d1fftb2 58 HSNKVEAVVWTVPILIIIFLAVLTWK 83 (91)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCceehhhHHHHHHHHHHHHHHHHHH
Confidence 33455678999999999999888754
No 3
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.54 E-value=14 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcceEEeehhHHHHhHhccchhhhhH
Q 025951 141 KGSFLWILAPVVLISSLILPQMFLGN 166 (245)
Q Consensus 141 ~~SlLW~lGP~vLVASfilP~lyLrk 166 (245)
.--++|-+.|++.....-+|++-|=-
T Consensus 60 ~lEiiWTiiP~lILi~ia~PSl~lLY 85 (90)
T d1v54b2 60 EVETIWTILPAIILILIALPSLRILY 85 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999987643
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.78 E-value=16 Score=25.70 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCcceEEeehhHHHHhHhccchhhh
Q 025951 140 DKGSFLWILAPVVLISSLILPQMFL 164 (245)
Q Consensus 140 ~~~SlLW~lGP~vLVASfilP~lyL 164 (245)
..-.++|-+.|++++..+.+|++-+
T Consensus 75 ~~lEi~WTviP~lIL~~laipSl~~ 99 (107)
T d3ehbb2 75 TPIEVIWTLVPVLILVAIGAFSLPI 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999743
No 5
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=11.00 E-value=28 Score=21.42 Aligned_cols=16 Identities=44% Similarity=0.856 Sum_probs=11.3
Q ss_pred EecCCCccccccCccccC
Q 025951 118 SFCGLTHQLVEEGKLMSA 135 (245)
Q Consensus 118 SF~~~~~q~v~E~~l~Ss 135 (245)
||||++.+ +-++++.-
T Consensus 5 SFCgk~~~--eV~~LI~G 20 (38)
T d2ds5a1 5 SFCGKSQH--EVRKLIAG 20 (38)
T ss_dssp TTTCCBTT--TSSCEEEC
T ss_pred eCCCCCHH--HHHHHhcC
Confidence 89999996 44566544
No 6
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=1e+02 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=12.3
Q ss_pred EeecCCCCCCCCCCCCCCC
Q 025951 78 LCASNSGSDTKLGFPSGEN 96 (245)
Q Consensus 78 ~css~s~~d~~L~~~~~e~ 96 (245)
+..=+...+.||.+...+.
T Consensus 14 lydy~a~~~~eLs~~~Gd~ 32 (67)
T d1awwa_ 14 LYDYMPMNANDLQLRKGDE 32 (67)
T ss_dssp SSCCCCSSSSSCCCCSSCE
T ss_pred CcCCCCCCcCCcCCCCCCE
Confidence 3344556677787777766
No 7
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.98 E-value=62 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=18.6
Q ss_pred EeehhHHHHhHhccchhhhhHHHH
Q 025951 146 WILAPVVLISSLILPQMFLGNVIE 169 (245)
Q Consensus 146 W~lGP~vLVASfilP~lyLrkvie 169 (245)
-..=|.+..|+|.+|. |+|++||
T Consensus 268 ~yYn~~ih~~~F~lP~-~~~~~l~ 290 (290)
T d1xj5a_ 268 KFYNAEIHSAAFCLPS-FAKKVIE 290 (290)
T ss_dssp SSCCHHHHHHTTCCCH-HHHHHHC
T ss_pred cccCHHHHHHHccCcH-HHHHhhC
Confidence 4457889999999998 7788774
No 8
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=7.43 E-value=34 Score=20.40 Aligned_cols=13 Identities=62% Similarity=1.055 Sum_probs=10.4
Q ss_pred hhcccccccccce
Q 025951 222 ACASTASLGCSAS 234 (245)
Q Consensus 222 ~~~~~~~~~~~~~ 234 (245)
-|.-||-+||+-+
T Consensus 9 pctvtallgc~c~ 21 (30)
T d1nbja_ 9 PCTVTALLGCSCS 21 (30)
T ss_dssp CCSHHHHTTCEEE
T ss_pred eeeeeeeeccccc
Confidence 3788999999864
No 9
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=6.27 E-value=40 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=23.2
Q ss_pred eehhHHHHhHhccchhhhhHHHHHHhccchh
Q 025951 147 ILAPVVLISSLILPQMFLGNVIEDFIKDNLL 177 (245)
Q Consensus 147 ~lGP~vLVASfilP~lyLrkvieavfeDslL 177 (245)
++||+| ||.+++|.=++....+.=+.||=.
T Consensus 14 l~GPvv-vaav~~~~~~~~~l~~~gv~DSK~ 43 (213)
T d1io2a_ 14 VIGPMV-IAAVVVDENSLPKLEELKVRDSKK 43 (213)
T ss_dssp SBSCEE-EEEEEEEGGGHHHHHHTTGGGCTT
T ss_pred cccceE-EEEEEEchhhcchhhhcCcchhhh
Confidence 479965 777889988888877777888854
No 10
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=5.93 E-value=1.2e+02 Score=20.15 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.3
Q ss_pred ccccccccccccceeEeecCC
Q 025951 63 KIEGYSAWSSKRGAILCASNS 83 (245)
Q Consensus 63 ~~~g~s~~s~~r~~~~css~s 83 (245)
.++|+.....+||-++|..|+
T Consensus 71 ~l~~i~~~~i~rG~vl~~~~~ 91 (95)
T d1jnya1 71 NVRGVEKKDIKRGDVVGHPNN 91 (95)
T ss_dssp EEESSCGGGCCTTCEEECTTS
T ss_pred EEEcCcHHhcCCCCEEECCCc
Confidence 467888888999999998764
Done!