BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025952
(245 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/246 (89%), Positives = 233/246 (94%), Gaps = 1/246 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAA-NATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGIATTAFPSVLSSSKSKF V + A NA+S+++MSA+WMPG+PRPPYL
Sbjct: 1 MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 61 DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AAVPGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+K +EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
Query: 240 PRGIVP 245
PR I P
Sbjct: 241 PRTISP 246
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/241 (85%), Positives = 226/241 (93%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPA-AANATSKYAMSADWMPGEPRPPYL 59
MASNTLMS I +AFPS+LSSSKS+F TA L NA+S+++M+ADWMPG+PRPPYL
Sbjct: 1 MASNTLMSSAI--SAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPRPPYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPT+L IEFL+I+FVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+KF EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG+V+I
Sbjct: 179 KDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/248 (84%), Positives = 229/248 (92%), Gaps = 5/248 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPA--AANATS-KYAMSADWMPGEPRPP 57
MA+NTLMS I +AFPS+LSSSKS+F AV L + NA+S +++MSADWMPG+PRPP
Sbjct: 1 MAANTLMSSAI--SAFPSLLSSSKSRFAAAVPLSSFVVTNASSSRFSMSADWMPGQPRPP 58
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ 117
YLDGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQ
Sbjct: 59 YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 118
Query: 118 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLG 177
EWAAVPGGQATYLG PVPWGTLPTIL IEFL+I+FVEHQRSMEKDPEKKKYPGGAFDPLG
Sbjct: 119 EWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLG 178
Query: 178 FSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 237
+SKDP+ F EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA HLADPWHNNIG+V
Sbjct: 179 YSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGNV 238
Query: 238 IIPRGIVP 245
IIP+ I+P
Sbjct: 239 IIPQSILP 246
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/246 (84%), Positives = 223/246 (90%), Gaps = 2/246 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLP-AAANATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGI PS LSS+KSKF A+ + A N+ S+++MSADWMPG+PRP YL
Sbjct: 1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVSVGATNSMSRFSMSADWMPGQPRPSYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEW
Sbjct: 60 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 119
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+S
Sbjct: 120 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 179
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII
Sbjct: 180 KDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
Query: 240 PRGIVP 245
P+GI P
Sbjct: 240 PKGIFP 245
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/241 (85%), Positives = 225/241 (93%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPA-AANATSKYAMSADWMPGEPRPPYL 59
MASNTLMS I +AFPS+LSSSKS+F TA L NA+S+++M+ADWMPG+PRPPYL
Sbjct: 1 MASNTLMSSAI--SAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPRPPYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVP GTLPT+L IEFL+I+FVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+KF EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG+V+I
Sbjct: 179 KDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/244 (87%), Positives = 231/244 (94%), Gaps = 2/244 (0%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
A+NTLMSCGIAT AFPS+LSSSKSKF +++ LP + N TS+ MSADW+PG+PRPPYLDG
Sbjct: 3 ATNTLMSCGIAT-AFPSLLSSSKSKFASSIPLP-SVNGTSRVTMSADWLPGQPRPPYLDG 60
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL+PEALGLGNWV+AQEWAA
Sbjct: 61 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAA 120
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
PGGQATYLG PVPWGTLPT+L IEF++IAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 121 APGGQATYLGQPVPWGTLPTVLAIEFVAIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 180
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P+KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD+I+PR
Sbjct: 181 PKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIVPR 240
Query: 242 GIVP 245
+ P
Sbjct: 241 TLSP 244
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/245 (86%), Positives = 226/245 (92%), Gaps = 1/245 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MAS L SCG+A A PS+LSSSKSKF T++ LP AA +++ MSADWMPG+PRPPYLD
Sbjct: 1 MASTVLRSCGVAAVA-PSLLSSSKSKFATSLPLPNAAAGSARVTMSADWMPGQPRPPYLD 59
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG+LVPEALGLGNWVQAQEWA
Sbjct: 60 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQAQEWA 119
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
A+PGGQATYLG PVPWG LPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+SK
Sbjct: 120 AIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSK 179
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
DP KFEEYKVKEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNIGDVIIP
Sbjct: 180 DPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDVIIP 239
Query: 241 RGIVP 245
R I+P
Sbjct: 240 RSIMP 244
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/245 (87%), Positives = 228/245 (93%), Gaps = 1/245 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+NTLMSCGIAT AFPS+LSSSKSKF ++V LP ++S+ MSADWMPG+PRPPYLD
Sbjct: 1 MATNTLMSCGIAT-AFPSLLSSSKSKFASSVPLPCVNGSSSRITMSADWMPGQPRPPYLD 59
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQEWA
Sbjct: 60 GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 119
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
A+PGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SK
Sbjct: 120 AIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 179
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
DP KF EYKVKEIKNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGD+IIP
Sbjct: 180 DPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 239
Query: 241 RGIVP 245
P
Sbjct: 240 TSFSP 244
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/245 (86%), Positives = 229/245 (93%), Gaps = 2/245 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+NTLMSCGIAT AFPS+LSSSKSKF +++ LP+ N TS+ MSA+WMPG+PRPPYLD
Sbjct: 1 MATNTLMSCGIAT-AFPSLLSSSKSKFASSIPLPSV-NGTSRVTMSANWMPGQPRPPYLD 58
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV+AQEWA
Sbjct: 59 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 118
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
A PGGQATYLG PVPWGTLP IL IEF++IAFVEHQRSMEKD EKKKYPGGAFDPLG+SK
Sbjct: 119 ATPGGQATYLGQPVPWGTLPIILAIEFVAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSK 178
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
DPQKFEEYKVKEIKNGRLALLAFVG CVQQ+AYPGTGPLENLATHLADPWHNNIGDV+IP
Sbjct: 179 DPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDVLIP 238
Query: 241 RGIVP 245
R + P
Sbjct: 239 RSVSP 243
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/246 (83%), Positives = 219/246 (89%), Gaps = 2/246 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGI PS LSS+KSKF A+ + A N S+++MSADWMPG+PRP YL
Sbjct: 1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEW
Sbjct: 60 DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 119
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+S
Sbjct: 120 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 179
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVII
Sbjct: 180 KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239
Query: 240 PRGIVP 245
P+GI P
Sbjct: 240 PKGIFP 245
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/246 (86%), Positives = 226/246 (91%), Gaps = 2/246 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAA-NATSKYAMSADWMPGEPRPPYL 59
MASNTLMSCGIA + SVLSSS SKF AV + A + S+++MSA+WMPG+PRPPYL
Sbjct: 1 MASNTLMSCGIAAVSP-SVLSSSYSKFAVAVPVCVGAVSGNSRFSMSAEWMPGQPRPPYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 60 DGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 119
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 120 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 179
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII
Sbjct: 180 KDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
Query: 240 PRGIVP 245
RGI+P
Sbjct: 240 LRGILP 245
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/237 (84%), Positives = 220/237 (92%), Gaps = 3/237 (1%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPA--AANATS-KYAMSADWMPGEPRPPYLDGSAPGDFG 68
A +AFPS+LSSSKS+F TAV L + NA+S +++MSADWMPG+PRPPYLDGSAPGDFG
Sbjct: 4 AISAFPSLLSSSKSRFATAVPLSSFGVTNASSSRFSMSADWMPGQPRPPYLDGSAPGDFG 63
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQAT 128
FDPLRLGEVPENLER+KESELIHC WAMLAVPGILVPEALGLGNWV+AQEWAAVPGGQAT
Sbjct: 64 FDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQAT 123
Query: 129 YLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEY 188
YLG PVPWGTLPTIL IEFL+I+FVEHQRSM KDPEKKKYPGGAFDPLG+SKDP+ F EY
Sbjct: 124 YLGNPVPWGTLPTILAIEFLAISFVEHQRSMGKDPEKKKYPGGAFDPLGYSKDPKTFHEY 183
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 245
KVKE+KNGRLALLAFVGFCVQQSAYPGTGPLENLA HLADPWHNNIG++IIP+ I+P
Sbjct: 184 KVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGNIIIPQSILP 240
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/241 (86%), Positives = 220/241 (91%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVPENLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AAVPGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct: 179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/239 (84%), Positives = 221/239 (92%), Gaps = 4/239 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLP--AAANATSKYAMSADWMPGEPRPPY 58
MA NTLMS I +AFPS+LSSSKS+F T++ LP A+ NA+S++ M++DWMPG+PRP Y
Sbjct: 1 MACNTLMSSAI--SAFPSLLSSSKSRFSTSLPLPCTASTNASSRFTMTSDWMPGQPRPSY 58
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE 118
LDGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQE
Sbjct: 59 LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 118
Query: 119 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 178
WAA+PGGQATYLG PVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLG+
Sbjct: 119 WAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 178
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 237
SKDP+KF EYK+KE+KNGRLALLAFVG VQQ+AYPGTGPLENLATHLADPWHNNIG
Sbjct: 179 SKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLADPWHNNIGKC 237
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/241 (85%), Positives = 220/241 (91%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVPENLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+KFEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH NIGD++I
Sbjct: 179 KDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNIGDIVI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/241 (85%), Positives = 219/241 (90%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct: 179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/241 (85%), Positives = 218/241 (90%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCG A +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGKAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIKMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct: 179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/201 (93%), Positives = 195/201 (97%)
Query: 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILV 104
MSADWMPG+PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG+LV
Sbjct: 1 MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLV 60
Query: 105 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 164
PEALGLGNWVQAQEWAA+PGGQATYLG PVPWG LPTIL IEFL+IAFVEHQRSMEKD E
Sbjct: 61 PEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDTE 120
Query: 165 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
KKKYPGGAFDPLG+SKDP KFEEYKVKEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+
Sbjct: 121 KKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLAS 180
Query: 225 HLADPWHNNIGDVIIPRGIVP 245
HLADPWHNNIGDVIIPR I+P
Sbjct: 181 HLADPWHNNIGDVIIPRSIMP 201
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/244 (76%), Positives = 212/244 (86%), Gaps = 3/244 (1%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S S++ + + A A + + MSA+WMPG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPS-SRWSSRLPFCANATTSGRVTMSAEWMPGQPRPAHLDG 61
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAVPGILVPEALGLGNWV+AQEWAA
Sbjct: 62 SSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 121
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
VPGGQATYLG PVPWG+LPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 122 VPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKD 181
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD+IIPR
Sbjct: 182 PAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 241
Query: 242 GIVP 245
I P
Sbjct: 242 SISP 245
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/246 (77%), Positives = 211/246 (85%), Gaps = 7/246 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPYL 59
+S+ L SC + PS+L+ S A P ANAT+ + MSA+WMPG+PRP +L
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRLA---PFCANATTSGRVTMSAEWMPGQPRPAHL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 60 DGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEW 119
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFDPLGFS
Sbjct: 120 AAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFS 179
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNIGD+II
Sbjct: 180 KDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDIII 239
Query: 240 PRGIVP 245
PR I P
Sbjct: 240 PRSISP 245
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/247 (76%), Positives = 212/247 (85%), Gaps = 8/247 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPY 58
MA++ L SC + PS+L+ S ++ LP A AT+ + MSA+WMPG+PRP +
Sbjct: 1 MATSGLRSC--SAVGVPSLLAPSSNR----SRLPVCAYATTSGRVTMSAEWMPGQPRPAH 54
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE 118
LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAVPG+LVPEALGLGNWVQAQE
Sbjct: 55 LDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQE 114
Query: 119 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 178
WAA PGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFDPLGF
Sbjct: 115 WAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGF 174
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
SKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HL+DPWHNNIGD+I
Sbjct: 175 SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDII 234
Query: 239 IPRGIVP 245
IPR I P
Sbjct: 235 IPRTIYP 241
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/247 (75%), Positives = 211/247 (85%), Gaps = 8/247 (3%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPY 58
MA++ L SC + PS+L+ S ++ LP A AT+ + MSA+WMPG+PRP +
Sbjct: 1 MATSGLRSC--SAVGVPSLLAPSSNR----SRLPVCAYATTSGRVTMSAEWMPGQPRPAH 54
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE 118
LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAVPG+LVPEALGLGNWVQAQE
Sbjct: 55 LDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQE 114
Query: 119 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 178
WAA PGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFDPLGF
Sbjct: 115 WAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGF 174
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
SKDP KFEEYK+KEIKNGRLA+LAFV FCVQQSAYPGTGPLENLA+HL+DPWHNNIGD+I
Sbjct: 175 SKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNNIGDII 234
Query: 239 IPRGIVP 245
IPR I P
Sbjct: 235 IPRTIYP 241
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/244 (74%), Positives = 204/244 (83%), Gaps = 2/244 (0%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 62
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S+PGDFGFDPL LG VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA
Sbjct: 63 SSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 122
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
VPGGQATY G PVPWG LPTIL IEFL+IAF EHQR+MEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 123 VPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKD 182
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P K EEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNIGDV+IPR
Sbjct: 183 PVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDVVIPR 242
Query: 242 GIVP 245
I P
Sbjct: 243 SIYP 246
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/246 (74%), Positives = 207/246 (84%), Gaps = 1/246 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYL 59
MA+ S +A F SS+KS+FF+ SL S+ +MSA+WMPG+PRPP+L
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSMSAEWMPGQPRPPHL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPLRLG VPENLERYKESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ+W
Sbjct: 61 DGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQKW 120
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PG QATYLG PVPWG LP IL +EFLSIAFVE QR+ E DPEK+KYPGGAFDPLGFS
Sbjct: 121 AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFDPLGFS 180
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI ++II
Sbjct: 181 KDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEIII 240
Query: 240 PRGIVP 245
PR ++P
Sbjct: 241 PRSVMP 246
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/245 (73%), Positives = 205/245 (83%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+ S +A AF SS+KS+FF+ S S+ +MSA+WMPG+PRPP+LD
Sbjct: 1 MATAVGCSPAVAPVAFAGAFSSAKSRFFSPTSSLVGRRHGSRVSMSAEWMPGQPRPPHLD 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GSAPGDFGFDPLRLG +PENLERYKESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ+WA
Sbjct: 61 GSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWA 120
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
A+PG QATY G PVPWG LP +L +EFL+IAFVE QR+ E DPEK+KYPGGAFDPLGFSK
Sbjct: 121 AIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSK 180
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
DP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI ++IIP
Sbjct: 181 DPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNIAEIIIP 240
Query: 241 RGIVP 245
R + P
Sbjct: 241 RSLFP 245
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/239 (77%), Positives = 206/239 (86%), Gaps = 7/239 (2%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPYL 59
+S+ L SC + PS+L+ S A P ANAT+ + MSA+WMPG+PRP +L
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRLA---PFCANATTSGRVTMSAEWMPGQPRPAHL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 60 DGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEW 119
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYPGGAFDPLGFS
Sbjct: 120 AAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFS 179
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
KDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADPWHNNIGD+I
Sbjct: 180 KDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDII 238
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/246 (73%), Positives = 206/246 (83%), Gaps = 1/246 (0%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYL 59
MA+ S +A F SS+KS+FF+ SL S+ +MS +WMPG+PRPP+L
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSMSDEWMPGQPRPPHL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPLRLG VPENLERYKESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ+W
Sbjct: 61 DGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQKW 120
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PG QATYLG PVPWG LP IL +EFLSIAFVE QR+ E DPEK+KYPGGAFDPLGFS
Sbjct: 121 AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFDPLGFS 180
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI ++II
Sbjct: 181 KDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEIII 240
Query: 240 PRGIVP 245
PR ++P
Sbjct: 241 PRSVMP 246
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/231 (78%), Positives = 203/231 (87%), Gaps = 2/231 (0%)
Query: 17 PSVLSSSKSKFFTAVSLPAAANATS--KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRL 74
PS+L+ S S + LP A+AT+ + MSA+WMPG+PRP +LDGS+PGDFGFDPL L
Sbjct: 19 PSLLAPSTSSSSRSGRLPFCAHATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGL 78
Query: 75 GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 134
VPEN ER+KESE+ HCRWAMLAVPG+LVPEALGLGNWV+AQEWAAVPGGQATYLG PV
Sbjct: 79 ATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVKAQEWAAVPGGQATYLGAPV 138
Query: 135 PWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
PWGTLPTIL +EF++IAF EHQR+MEKDPEKKKYPGGAFDPLGFS+DP K EEYK+KEIK
Sbjct: 139 PWGTLPTILAVEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSRDPAKLEEYKLKEIK 198
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 245
NGRLA+LAFVGFCVQQSAYPGTGPLENLA HLADPWHNNIGD+IIPR I P
Sbjct: 199 NGRLAMLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNIGDIIIPRSISP 249
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/242 (73%), Positives = 201/242 (83%), Gaps = 2/242 (0%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 3 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 60
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA
Sbjct: 61 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 120
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 121 LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKD 180
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IPR
Sbjct: 181 PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 240
Query: 242 GI 243
I
Sbjct: 241 NI 242
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/244 (71%), Positives = 209/244 (85%), Gaps = 4/244 (1%)
Query: 5 TLMSCG--IATTAFPSVLSSSKSKFF-TAVSLPAAANAT-SKYAMSADWMPGEPRPPYLD 60
T M+C +A P++ + KSKFF +A++ P AA + S+ +MSA+W+PG+PRP YLD
Sbjct: 3 TAMACSQLVAAAVAPTLAGTQKSKFFGSAITTPGAAFSNGSRVSMSAEWLPGQPRPAYLD 62
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GSAPGDFGFDPL LGEVP+NLER+KESELIHCRWAMLAVPG L+PEALGLGNWV+AQ+WA
Sbjct: 63 GSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEALGLGNWVEAQQWA 122
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
A PGGQATYLGTPVPWGTLP I+ IEF++IAFVE +R EK+KYPGGAFDPLGFSK
Sbjct: 123 ATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRRIGVPSAEKRKYPGGAFDPLGFSK 182
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
DP+KFEE+K+KE+KNGRLALLAF+GFC Q +AYPGTGPL+NLATHLADPWHNNI ++IIP
Sbjct: 183 DPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYPGTGPLQNLATHLADPWHNNIANIIIP 242
Query: 241 RGIV 244
R ++
Sbjct: 243 RSVM 246
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/242 (71%), Positives = 198/242 (81%), Gaps = 2/242 (0%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAFATTSGRVTMSAEWFPGQPRPAHLDG 62
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA
Sbjct: 63 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 122
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+P GQATY G PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 123 LPDGQATYFGVPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKD 182
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENL HLADPWHNNIGD+++PR
Sbjct: 183 PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHLADPWHNNIGDIVVPR 242
Query: 242 GI 243
I
Sbjct: 243 NI 244
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/196 (87%), Positives = 185/196 (94%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
MPG+PRP +LDGS+PGDFGFDPL L VPEN ER+KESE+ HCRWAMLAVPGILVPEALG
Sbjct: 1 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 60
Query: 110 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYP 169
LGNWV+AQEWAAVPGGQATYLG PVPWGTLPTILVIEF++IAF EHQR+MEKDPEKKKYP
Sbjct: 61 LGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYP 120
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
GGAFDPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLA+HLADP
Sbjct: 121 GGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADP 180
Query: 230 WHNNIGDVIIPRGIVP 245
WHNNIGD+IIPR I P
Sbjct: 181 WHNNIGDIIIPRSISP 196
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/236 (75%), Positives = 198/236 (83%), Gaps = 1/236 (0%)
Query: 11 IATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGF 69
+A AF SS+KS+FF+ SL S+ +MSA+WMPG+PRP +LDGSAPGDFGF
Sbjct: 11 VAPVAFAGTFSSAKSRFFSPTNSLSLGVCNGSRVSMSAEWMPGQPRPAHLDGSAPGDFGF 70
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATY 129
DPL LG VPENLERYKESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ+WAA+PGGQATY
Sbjct: 71 DPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGGQATY 130
Query: 130 LGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYK 189
LG PVPWG P IL I FL +AF E QR+ E D EK+KYPGGAFDPLGFSKDP KFEEYK
Sbjct: 131 LGVPVPWGYFPIILSIFFLKMAFAESQRNGEPDLEKRKYPGGAFDPLGFSKDPAKFEEYK 190
Query: 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 245
VKEIKNGRLALLAFVGFCVQ SA PGTGPLENLATHL+DPWH NI ++IIPR I+P
Sbjct: 191 VKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEIIIPRSILP 246
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/187 (93%), Positives = 179/187 (95%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
MPGEPRP YLDGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 110 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYP 169
GNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYP
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYP 120
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
GGAFDPLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP
Sbjct: 121 GGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 180
Query: 230 WHNNIGD 236
WHNNIGD
Sbjct: 181 WHNNIGD 187
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 166/205 (80%), Positives = 187/205 (91%)
Query: 41 SKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
S+ +MSA+WMPG+PRPP+LDGSAPGDFGFDPLRLG +PENLERYKESELIHCRWAMLAVP
Sbjct: 2 SRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVP 61
Query: 101 GILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 160
G+L+PEALGLGNWV+AQ+WAA+PG QATY G PVPWG LP +L +EFL+IAFVE QR+ E
Sbjct: 62 GMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGE 121
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DPEK+KYPGGAFDPLGFSKDP KF+EYKVKEIKNGRLALLAFVGFCVQ SA PGTGPLE
Sbjct: 122 PDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLE 181
Query: 221 NLATHLADPWHNNIGDVIIPRGIVP 245
NLATHL+DPWH NI ++IIPR + P
Sbjct: 182 NLATHLSDPWHRNIAEIIIPRSLFP 206
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 194/244 (79%), Gaps = 2/244 (0%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 28 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 85
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA
Sbjct: 86 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 145
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 146 LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKD 205
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHN P
Sbjct: 206 PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNTSATSSSPE 265
Query: 242 GIVP 245
+ P
Sbjct: 266 YLRP 269
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 166/201 (82%), Positives = 182/201 (90%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A A + + MSA+W PG+PRP +LDGS+PGDFGFDPL LG VPEN ER+KESE+ HCRW
Sbjct: 4 AYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRW 63
Query: 95 AMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE 154
AML VPG+LVPEALGLGNWV+AQEWAAVPGGQATY G PVPWG LPTIL IEF++IAF E
Sbjct: 64 AMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAE 123
Query: 155 HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
HQR+MEKDPEKKKYPGGAFDPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYP
Sbjct: 124 HQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYP 183
Query: 215 GTGPLENLATHLADPWHNNIG 235
GTGPLENLA+HLADPWHNNIG
Sbjct: 184 GTGPLENLASHLADPWHNNIG 204
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 167/246 (67%), Positives = 204/246 (82%), Gaps = 5/246 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLS-SSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPY 58
MA+ T+ G++ P++LS + ++KFF+ VS + + S+ +MS++WMPG+PRP Y
Sbjct: 1 MAAATMACVGLSA---PALLSGAQRTKFFSGHVSSLSTVSNGSRVSMSSEWMPGQPRPAY 57
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE 118
LDGS+PGDFGFDPL L EVPEN RYKESELIHCRWAMLAVPG+L+PEALGLGNWV AQ+
Sbjct: 58 LDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGLGNWVSAQQ 117
Query: 119 WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF 178
WAA PGGQATYLG PVPWGTLP IL IEFL++AFVE +R E D EK+KYPGG FDPLGF
Sbjct: 118 WAATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEPDHEKRKYPGGPFDPLGF 177
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+KDP+K EEYK+KE+KNGRLALLAF+GF VQ AYPGTGPLENLA+HL++PW NNI ++I
Sbjct: 178 AKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLSNPWANNIANII 237
Query: 239 IPRGIV 244
IPR ++
Sbjct: 238 IPRSVL 243
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/244 (69%), Positives = 192/244 (78%), Gaps = 2/244 (0%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
+S+ L SC + PS+L+ S + + A A + + MSA+W PG+PRP +LDG
Sbjct: 5 SSSGLRSC--SAVGVPSLLAPSSLSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDG 62
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S+PGDFGFDPL L VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA
Sbjct: 63 SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 122
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKD
Sbjct: 123 LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKD 182
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
P KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLEN THLADPWHN P
Sbjct: 183 PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTHLADPWHNTSATSSFPE 242
Query: 242 GIVP 245
+ P
Sbjct: 243 YLPP 246
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 163/202 (80%), Positives = 179/202 (88%), Gaps = 1/202 (0%)
Query: 35 AAANATSKYAMS-ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
A A + + MS A+W PG+PRP +LDGS+PGDFGFDPL L VPEN ER+KESE+ HCR
Sbjct: 4 AYATTSGRVTMSSAEWFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCR 63
Query: 94 WAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFV 153
WAML VPG+LVPEALGLGNWV+AQEWAAVPGGQATY G PVPWG LPTIL IEFL+IAF
Sbjct: 64 WAMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFA 123
Query: 154 EHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
EHQR+MEKDPEKKKYPGGAFDPLGFSKDP K EEYK+KEI+NGRLA+LAFVGFCVQQS Y
Sbjct: 124 EHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPY 183
Query: 214 PGTGPLENLATHLADPWHNNIG 235
PGTGPLENLA+HLADPWHNNIG
Sbjct: 184 PGTGPLENLASHLADPWHNNIG 205
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 162/209 (77%), Positives = 179/209 (85%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A A + + MSA+W PG+PRP +L GS+P PL L VPEN ER+KESE+ HCRW
Sbjct: 10 AYATTSGRVTMSAEWFPGQPRPAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRW 69
Query: 95 AMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE 154
AML VPG+LVPEALGLGNWV+AQEWAA+P GQATYLG PVPWG LPTIL IEFL+IAF E
Sbjct: 70 AMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAE 129
Query: 155 HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYP
Sbjct: 130 QQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYP 189
Query: 215 GTGPLENLATHLADPWHNNIGDVIIPRGI 243
GTGPLENLATHLADPWHNNIGD++IPR I
Sbjct: 190 GTGPLENLATHLADPWHNNIGDIVIPRNI 218
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/229 (72%), Positives = 186/229 (81%), Gaps = 6/229 (2%)
Query: 19 VLSSSKSKFF---TAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLG 75
V ++ KS FF ++VSL +N S+ M A+W+PG PRP YLDGSAPGDFGFDPL LG
Sbjct: 16 VATAQKSSFFAGSSSVSLLGCSNG-SRVCM-AEWLPGNPRPSYLDGSAPGDFGFDPLGLG 73
Query: 76 EVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVP 135
EVPENLER+KESELIH RWAMLAVPG+L+PEALG GNWV AQ+WAA PGGQATYLG PVP
Sbjct: 74 EVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWVSAQKWAATPGGQATYLGNPVP 133
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKN 195
WG LP IL IEFL+IAF E QR+ E DPEK+KYPGGAFDPLGFSK EE K+KEIKN
Sbjct: 134 WGNLPVILAIEFLAIAFAESQRNGEPDPEKRKYPGGAFDPLGFSKG-ANLEELKLKEIKN 192
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIV 244
GRLAL+AF+GF VQ AYPGTGPLENL THLADPWHN I VIIPR ++
Sbjct: 193 GRLALVAFLGFAVQAIAYPGTGPLENLKTHLADPWHNTIAHVIIPRSVL 241
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/169 (94%), Positives = 164/169 (97%)
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
GDFGFDPL LGEVPENLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEWAAVPG
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPG 60
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQK 184
GQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEK+KYPGGAFDPLG+SKDP+K
Sbjct: 61 GQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKRKYPGGAFDPLGYSKDPKK 120
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
FEE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN
Sbjct: 121 FEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 158/170 (92%), Positives = 163/170 (95%)
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
SAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEWAA
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SKD
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 120
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
P+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 121 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 170
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 150/198 (75%), Positives = 171/198 (86%), Gaps = 1/198 (0%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A+W+PG PRP YLDGSAPGDFGFDPL LGEVPENLER+KESELIH RWAMLAVPG+L+PE
Sbjct: 2 AEWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPE 61
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
ALG GNWV AQ+WAA PGGQATYLG PVPWGTLP IL +EF++IAF E QR+ E DPEK+
Sbjct: 62 ALGYGNWVSAQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQRNGESDPEKR 121
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
KYPGGAFDP+GFSK EE K+KEIKNGRLAL+AF+GF +Q AYPGTGPLENL THL
Sbjct: 122 KYPGGAFDPMGFSKG-ANLEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLENLKTHL 180
Query: 227 ADPWHNNIGDVIIPRGIV 244
ADPWHN I +++IPR ++
Sbjct: 181 ADPWHNTIANILIPRSVL 198
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/198 (76%), Positives = 169/198 (85%), Gaps = 1/198 (0%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A+W+PG PRP YLDGSAPGDFGFDPL LGEVPENLER+KESELIH RWAMLA+PG+L+PE
Sbjct: 2 AEWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPE 61
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
ALG GNWV AQ+WAA PGGQATYLG PVPWG LP IL +EF++IAFVE QR+ E DPEK+
Sbjct: 62 ALGYGNWVSAQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQRNGESDPEKR 121
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
KYPGG FDPLGFSK EE K+KEIKNGRLAL+AF+GF VQ AYPGTGPLENL THL
Sbjct: 122 KYPGGPFDPLGFSKG-ANLEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLENLKTHL 180
Query: 227 ADPWHNNIGDVIIPRGIV 244
ADPWHN I V+IPR ++
Sbjct: 181 ADPWHNTIAHVLIPRSVL 198
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/241 (72%), Positives = 186/241 (77%), Gaps = 37/241 (15%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAF
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAF--------------------------- 151
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct: 152 -------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 204
Query: 240 P 240
P
Sbjct: 205 P 205
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/198 (82%), Positives = 176/198 (88%), Gaps = 3/198 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGR 197
KDP+K EE KVKEIKNG+
Sbjct: 179 KDPKKLEELKVKEIKNGK 196
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/157 (92%), Positives = 152/157 (96%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTIL 143
YKESELIHCRWAMLAVPGILVPEALG GNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL
Sbjct: 1 YKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTIL 60
Query: 144 VIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 203
IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SKDP+K EE KVKEIKNGRLALLAF
Sbjct: 61 AIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAF 120
Query: 204 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
VGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 121 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 157
>gi|413935744|gb|AFW70295.1| hypothetical protein ZEAMMB73_802965 [Zea mays]
Length = 150
Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/150 (91%), Positives = 145/150 (96%)
Query: 96 MLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 155
MLAVPGILVPEALGLGNWV+AQEWAAVPGGQATYLG PVPWGTLPTILVIEF++IAF EH
Sbjct: 1 MLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEH 60
Query: 156 QRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEEYK+KEIKNGRLA+LAFVGFCVQQSAYPG
Sbjct: 61 QRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPG 120
Query: 216 TGPLENLATHLADPWHNNIGDVIIPRGIVP 245
TGPLENLA+HLADPWHNNIGD+IIPR I P
Sbjct: 121 TGPLENLASHLADPWHNNIGDIIIPRSISP 150
>gi|388506626|gb|AFK41379.1| unknown [Lotus japonicus]
Length = 147
Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 133/145 (91%), Positives = 142/145 (97%)
Query: 96 MLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 155
MLAVPGILVPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPT+L IEFL+I+FVEH
Sbjct: 1 MLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEH 60
Query: 156 QRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
QRSMEKDPEKKKYPGGAFDPLG+SKDP+KF EYKVKEIKNGRLALLAFVGFCVQQSAYPG
Sbjct: 61 QRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPG 120
Query: 216 TGPLENLATHLADPWHNNIGDVIIP 240
TGPLENLATHLADPWHNNIG+V+IP
Sbjct: 121 TGPLENLATHLADPWHNNIGNVLIP 145
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/147 (90%), Positives = 141/147 (95%), Gaps = 2/147 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFT-AVSLPA-AANATSKYAMSADWMPGEPRPPY 58
MASNTLMSCGIATTAFPSVLSSSKSKF T AV LP+ ANA+S+++MSA+WMPGEPRPPY
Sbjct: 1 MASNTLMSCGIATTAFPSVLSSSKSKFATSAVQLPSIGANASSRFSMSAEWMPGEPRPPY 60
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE 118
LDGSAPGDFGFDPLRLGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQE
Sbjct: 61 LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
Query: 119 WAAVPGGQATYLGTPVPWGTLPTILVI 145
WAAVPGGQATYLG PVPWGTLPTILVI
Sbjct: 121 WAAVPGGQATYLGNPVPWGTLPTILVI 147
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 136/168 (80%), Positives = 149/168 (88%), Gaps = 2/168 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLP-AAANATSKYAMSADWMPGEPRPPYL 59
MAS L SCG+A FPS+LSSSKSKF TAV+LP A +NA++++ MSADWMPG+PRPPYL
Sbjct: 1 MASTALRSCGVAAV-FPSLLSSSKSKFATAVALPGACSNASTRFTMSADWMPGQPRPPYL 59
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LG VPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 60 DGSAPGDFGFDPLLLGAVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 119
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 167
AAVPGGQATYLG PVPWG LPTILVIEFL+IAFVEHQ + PEKKK
Sbjct: 120 AAVPGGQATYLGNPVPWGYLPTILVIEFLAIAFVEHQSEHGERPEKKK 167
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/160 (76%), Positives = 136/160 (85%), Gaps = 4/160 (2%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLS-IAFVEHQRS 158
AA+PGGQATYLG PVPWGTLPTIL IEFL+ + ++ +R+
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAHLTLLDTRRT 158
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/205 (57%), Positives = 139/205 (67%), Gaps = 5/205 (2%)
Query: 30 AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESEL 89
A LP + N + + +W+PG P YLDG PG FGFDP LG P NL+R++E+EL
Sbjct: 19 ATKLPKS-NGSRVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAEL 76
Query: 90 IHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS 149
+H RWAM V G L E LG G+W QA WA V GG TYLG PVP+ L T+L IEF++
Sbjct: 77 VHSRWAMAGVAGALGAELLGQGDWYQAPLWA-VNGGAPTYLGIPVPF-NLSTLLAIEFVA 134
Query: 150 IAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
IA E QR+ E D EK+KYPGGAFDPLGFSKD + EE K+KE+KNGRLA+LAFVGF Q
Sbjct: 135 IAGAEAQRNAEPDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQ 194
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
+A G GPLE L HLADPW N
Sbjct: 195 HAAT-GKGPLEALKLHLADPWGANF 218
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/186 (54%), Positives = 132/186 (70%), Gaps = 8/186 (4%)
Query: 49 WMPGEPRPP-YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA 107
W PG + P +LDGS PGDFG+DPL L + P +L RY+E+E+++ RWAML V G+L PE
Sbjct: 41 WAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAPEL 100
Query: 108 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 167
+G G W+ AQ+W AV GG+ TYLG +P+G T+L +EF +++VE R +EKDP K+
Sbjct: 101 VGQGTWLSAQDW-AVTGGKPTYLGNELPYG-FGTVLAVEFFCLSWVEISRGLEKDPMKRI 158
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGGAFDPLGF KD E KVKE++NGRLA++AFVG Q + G GP+ NL HLA
Sbjct: 159 YPGGAFDPLGFGKD----EVNKVKELRNGRLAMVAFVGMWC-QGIHVGGGPVSNLMDHLA 213
Query: 228 DPWHNN 233
DP HNN
Sbjct: 214 DPLHNN 219
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 124/196 (63%), Gaps = 7/196 (3%)
Query: 38 NATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML 97
N TSK +M A WMPG P YLDGS P D+GFDPL LG+ P+NL R++E+ELIH RWAML
Sbjct: 28 NGTSKVSMRATWMPGSAPPSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAML 87
Query: 98 AVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR 157
V G E + NWV+A + Q TYLG +P+ LP I IE +A+VE +R
Sbjct: 88 GVSGAAGAEIITGINWVEAPVQS-----QQTYLGNTIPF-PLPAIAAIEVFVMAYVESKR 141
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
E D K+ YPGGAFDP GFSK FE+ K KE+ NGR+A+LAF G + A G
Sbjct: 142 GSETDRSKRMYPGGAFDPAGFSKGAD-FEKLKRKELANGRVAMLAFAGIIGEAQANNLEG 200
Query: 218 PLENLATHLADPWHNN 233
P+ LA HLADPWH N
Sbjct: 201 PVAALARHLADPWHVN 216
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F + A +N + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 18 FAGRRVAAVSNGCRVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTES 77
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
E+IH RWAML V G L E LG GNW A W AV GG+AT+ G VP+ L T+L EF
Sbjct: 78 EVIHGRWAMLGVAGALAVELLGYGNWYDAPLW-AVTGGKATWFGIEVPF-DLNTLLAFEF 135
Query: 148 LSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
+++A E QR+ D YPGGAFDPLGF+KD K E K+KEIKNGRLA++AF+GF
Sbjct: 136 VAMAAAEGQRN---DAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFI 192
Query: 208 VQQSAYPGTGPLENLATHLADPWHNNI 234
Q +A G GPL L HLA+PW N
Sbjct: 193 AQHAA-TGKGPLAALGEHLANPWGANF 218
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 18 FSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTES 77
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
E+IH RWAML V G L E LG GNW A W AV GG+AT+ G VP+ L +L EF
Sbjct: 78 EVIHGRWAMLGVAGSLAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLNALLAFEF 135
Query: 148 LSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
+++A E QR D YPGGAFDPLGF+KD K E K+KEIKNGRLA++AF+GF
Sbjct: 136 VAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFV 192
Query: 208 VQQSAYPGTGPLENLATHLADPWHNNI 234
Q +A G GP+ L HLA+PW N
Sbjct: 193 AQHAA-TGKGPIAALGEHLANPWGANF 218
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 130/207 (62%), Gaps = 6/207 (2%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 14 FSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTES 73
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
E+IH RWAML V G L E LG GNW A W AV GG+AT+ G VP+ L +L EF
Sbjct: 74 EVIHGRWAMLGVAGSLAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLNALLAFEF 131
Query: 148 LSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
+++A E QR D YPGGAFDPLGF+KD K E K+KEIKNGRLA++AF+GF
Sbjct: 132 VAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFV 188
Query: 208 VQQSAYPGTGPLENLATHLADPWHNNI 234
Q +A G GP+ L HLA+PW N
Sbjct: 189 AQHAA-TGKGPIAALGEHLANPWGANF 214
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 36 AANATS----KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 91
A NAT+ K + A WMPG P +L G+ P D+GFDPL LG+ P NL R++E+E+IH
Sbjct: 23 ATNATNGTVGKVSARAVWMPGSTPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIH 82
Query: 92 CRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIA 151
RWAML V G EA+ W++A V Q TYLG P+ LP ++ IE +A
Sbjct: 83 SRWAMLGVAGAAGQEAITGVTWIEAP----VQDSQ-TYLGAESPF-PLPVVVAIEVFVMA 136
Query: 152 FVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
FVE QRS EKDP K+ YPGGAFDP GFSK FE K KEI NGR+A+LAF G Q
Sbjct: 137 FVEQQRSNEKDPAKRLYPGGAFDPAGFSKGAD-FETLKKKEIANGRVAMLAFAGLIGQAQ 195
Query: 212 AYPGTGPLENLATHLADPWHNN 233
A GPL L H+ADPWH N
Sbjct: 196 ATNLEGPLSALGRHVADPWHVN 217
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/188 (51%), Positives = 123/188 (65%), Gaps = 6/188 (3%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
+W+PG P +L PG++GFDPL LG+ P +L+R+ ESE+IH RWAML V G L E
Sbjct: 1 GNWLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVE 60
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
LG GNW A W AV GG+AT+ G VP+ L T+L EF+++A E QR D
Sbjct: 61 LLGYGNWYDAPLW-AVNGGKATWFGIDVPF-DLNTLLAFEFVAMAAAEGQRG---DAGGV 115
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
YPGGAFDPLGF+KD K E K+KE+KNGRLA++AF+GF Q +A G GP+ L HL
Sbjct: 116 VYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAA-TGKGPIAALGEHL 174
Query: 227 ADPWHNNI 234
++PW N
Sbjct: 175 SNPWGANF 182
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVP 105
+ ++ PG YL+ PG+F FDPL LG+ L+RY+E+ELIHCRWAML G L
Sbjct: 34 AGNFAPGSEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAV 92
Query: 106 EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
E LGLGNW A WA V G + T+ G VP+ + TIL +E +++A E R+ +D EK
Sbjct: 93 EVLGLGNWYDAPLWA-VTGDKPTWFGIEVPF-DIATILGVEVVAMAVAEGLRNDNQDMEK 150
Query: 166 KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
+ YPGGAFDPLGFSKDP+ FE+ K+KE+KNGRLA++A +GF Q +A G LE L H
Sbjct: 151 RLYPGGAFDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAA-TGKPILEALGDH 209
Query: 226 LADPWHNNI 234
L+ P+ NN
Sbjct: 210 LSSPFFNNF 218
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 130/203 (64%), Gaps = 6/203 (2%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 18 FSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTES 77
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
E+IH RWAML V G L E LG GNW A W AV GG+AT+ G VP+ L +L EF
Sbjct: 78 EVIHGRWAMLGVAGSLAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLNALLAFEF 135
Query: 148 LSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
+++A E QR + +++ PGGAFDPLGF+KD K E K+KEIKNGRLA++AF+GF
Sbjct: 136 VAMAAAEGQRRRCR---RRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFV 192
Query: 208 VQQSAYPGTGPLENLATHLADPW 230
Q +A G PL L HLA+PW
Sbjct: 193 AQHAAT-GKAPLAALGEHLANPW 214
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/197 (47%), Positives = 124/197 (62%), Gaps = 6/197 (3%)
Query: 28 FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
F+ + A +N + + +W+PG P +L PG++GFDPL LG+ P +L+R+ ES
Sbjct: 18 FSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTES 77
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
E+IH RWAML V G L E LG GNW A W AV GG+AT+ G VP+ L +L EF
Sbjct: 78 EVIHGRWAMLGVAGSLAVELLGYGNWYDAPLW-AVNGGKATWFGIEVPF-DLNALLAFEF 135
Query: 148 LSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
+++A E QR D YPGGAFDPLGF+KD K E K+KEIKNGRLA++AF+GF
Sbjct: 136 VAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFV 192
Query: 208 VQQSAYPGTGPLENLAT 224
Q +A G GP+ A+
Sbjct: 193 AQHAA-TGKGPIAAWAS 208
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 31 VSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
S+ A A T++ + W PG P +L G P D+GFDPL LGE P+NL RY+E+EL+
Sbjct: 16 TSVKARARVTARASARPMWFPGAEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELM 75
Query: 91 HCRWAMLAVPGILVPEALGLGNWVQAQ--EWAAVPGGQATYLGTPVPWGTLPTILVIEFL 148
H RWAM+ V G + E G G+W AQ W A A YLG L ++ + +
Sbjct: 76 HARWAMMGVAGAVGVEIAGQGDWASAQPTTWDAT----AKYLGNETH-APLFAVIGVNGV 130
Query: 149 SIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+AF E QR E + YPGG+FDP G SK + FE K KE+ NGR+A++AF G
Sbjct: 131 LVAFAESQRQAATG-EARLYPGGSFDPAGLSKG-KDFETLKRKELANGRVAMMAFFGIMA 188
Query: 209 QQSAYP-GTGPLENLATHLADPWHNNI 234
Q A P G GP++ LA HLADPWH N+
Sbjct: 189 QHQADPSGPGPVKQLANHLADPWHVNV 215
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 131/239 (54%), Gaps = 39/239 (16%)
Query: 22 SSKSKFFTAVS---------LPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
+SKS+F T S P +++ A +W+PG P YLDGS PGD GFDPL
Sbjct: 17 ASKSRFLTGSSGKLGREVSVKPMTSSSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPL 76
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGT 132
L E PENL+ Y ++EL++ RWAML V G+L+PE + A +W G+A Y +
Sbjct: 77 GLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAEYFAS 134
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDP 175
T+ VIEF+ +VE +R S+ +DP K YPGG F+P
Sbjct: 135 S------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGIFNP 188
Query: 176 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
L F+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL H++DPWHN I
Sbjct: 189 LNFAPT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHISDPWHNTI 242
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 133/251 (52%), Gaps = 51/251 (20%)
Query: 35 AAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE------------ 79
A +K ++S+D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 41 AVPKKVAKTSISSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQN 100
Query: 80 -------------------------------NLERYKESELIHCRWAMLAVPGILVPEAL 108
L+R++E ELIH RWAMLA G L E L
Sbjct: 101 LAKNEAGGIIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL 160
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
W A + V G ++YLG P+P+ T+ T++ IE L I ++E QR+ E DPEK+ Y
Sbjct: 161 TGVTWQDAGKVELVDG--SSYLGQPLPF-TISTLIWIEVLVIGYIEFQRNAELDPEKRLY 217
Query: 169 PGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
PGG+ FDPL + DP+K E ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+
Sbjct: 218 PGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLS 276
Query: 228 DPWHNNIGDVI 238
DP H I D
Sbjct: 277 DPLHTTIFDTF 287
>gi|412990175|emb|CCO19493.1| unknown [Bathycoccus prasinos]
Length = 184
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 107/169 (63%), Gaps = 7/169 (4%)
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
D+GFDPL LGEVP NLER++E+EL++ RWAML V G EA G G W +A A
Sbjct: 11 DYGFDPLGLGEVPANLERFREAELLNARWAMLGVAGCWGVEAGGFGTWQEAPLAA----- 65
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
Q ++ G +P + T++ E L +AF E QR E D K+ YPGG+FDP G SK F
Sbjct: 66 QQSWGGIDLPISNMSTLVGFEILLMAFAEQQRISETDVSKRMYPGGSFDPAGLSKG-DGF 124
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYP-GTGPLENLATHLADPWHNN 233
E K KEI NGRLA++AF+G Q AYP G GP++ L H+ADPWH N
Sbjct: 125 ESLKRKEIANGRLAMVAFLGILAQNQAYPDGLGPVQALLNHVADPWHVN 173
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 133/250 (53%), Gaps = 51/250 (20%)
Query: 36 AANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE------------- 79
A +K + S+D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 42 APKKVAKTSTSSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNL 101
Query: 80 ------------------------------NLERYKESELIHCRWAMLAVPGILVPEALG 109
L+R++E ELIH RWAMLA G L E L
Sbjct: 102 AKNEAGGIIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLT 161
Query: 110 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYP 169
W A + V G ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YP
Sbjct: 162 GVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYP 218
Query: 170 GGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
GG+ FDPLG + DP+K E ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+D
Sbjct: 219 GGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSD 277
Query: 229 PWHNNIGDVI 238
P H I D
Sbjct: 278 PLHTTIFDTF 287
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 32/230 (13%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENL 81
+SK++ V AAA T W+PG P P +LDG+ P D+GFDPL LG PENL
Sbjct: 26 ASKARASVRVGAVAAARPT--------WLPGSPAPAHLDGTLPCDYGFDPLNLGADPENL 77
Query: 82 ERYKESELIHCRWAMLAVPGILVPEAL------GLGNWVQAQEWAAVPGGQATYLGT-PV 134
+ + ++EL+HCRWAML + G++ PE L L NW+ A +W +LG P+
Sbjct: 78 KWFVQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGKW------DGYWLGAGPL 131
Query: 135 PWGTLPTILVIEFLSIAFVEHQRSMEKDP----------EKKKYPGGAFDPLGFSKDPQK 184
+ + + E ++ +M +DP YP G FDP+G++KDP+K
Sbjct: 132 FFVQMAMMNWAEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGYAKDPKK 191
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
EE K KEI NGRLA++A VG C Q+ GTGP++NL THLADP HNNI
Sbjct: 192 AEELKRKEIANGRLAMVAIVG-CFAQAISTGTGPVDNLFTHLADPGHNNI 240
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 129/236 (54%), Gaps = 34/236 (14%)
Query: 20 LSSSKSKFFTAVSLPAAA----NATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLG 75
LS S KF A+S+ NA A +W+PG P P YLDGS PGD GFDPL L
Sbjct: 23 LSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLA 82
Query: 76 EVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVP 135
E PENL Y ++EL++ RWAML V G+++PE L + +W G+A Y +
Sbjct: 83 EDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKW--YDAGKAEYFASS-- 138
Query: 136 WGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGF 178
T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F
Sbjct: 139 ----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNF 194
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ E + KEI NGRLA+LAF+GF VQ + G GP +N H++DPWHN I
Sbjct: 195 ----EPTLEAREKEIANGRLAMLAFLGFIVQHNV-TGKGPFDNFMQHISDPWHNTI 245
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 126/234 (53%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETG 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 176 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 234 KERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 286
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 133/242 (54%), Gaps = 42/242 (17%)
Query: 22 SSKSKFFTAVS---------LPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T S P +++ + + A +W+PG P YLDGS PGD GF
Sbjct: 17 ASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATY 129
DPL L E PENL+ Y ++EL++ RWAML V G+L+PE + A +W G+A Y
Sbjct: 77 DPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAEY 134
Query: 130 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGA 172
+ T+ VIEF+ +VE +R S+ +DP K YPGG
Sbjct: 135 FASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGI 188
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
F+PL F+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL H++DPWHN
Sbjct: 189 FNPLNFAPT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHISDPWHN 243
Query: 233 NI 234
I
Sbjct: 244 TI 245
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 126/234 (53%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDG+ GD+GFDP LG+ E
Sbjct: 57 WFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 DIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ T+ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 176 -SSYLGQPLPF-TITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D +
Sbjct: 234 KERLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTL 286
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 116/189 (61%), Gaps = 7/189 (3%)
Query: 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVP 105
+ +W+PG P YL+ + P +GFDPL L + +L+R+KESE+IH RWAML G+L
Sbjct: 28 AGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAGVLGV 86
Query: 106 EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
E LG GNW A V GG ATY G +P+ L T+ IEF ++A E R +PEK
Sbjct: 87 EVLGYGNWYDA-PLPLVQGGSATYFGASIPF-DLGTLAAIEFAAMAGAESFRG-AAEPEK 143
Query: 166 KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
+ YPGG FDP G SK Q +E + KEIKNGRLA++A +GF Q +A G PLE L H
Sbjct: 144 RVYPGGPFDPAGMSKGNQ--DELRTKEIKNGRLAMIACLGFVAQHAAT-GASPLEALGAH 200
Query: 226 LADPWHNNI 234
LA+P N
Sbjct: 201 LANPMVANF 209
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 126/234 (53%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDG+ GD+GFDP LG+ E
Sbjct: 55 WFPGAVAPDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIGTRFESS 114
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 115 DVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 173
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 174 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEK 231
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 232 KERLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 284
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 129/235 (54%), Gaps = 34/235 (14%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAM----SADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S S F S A++TS+ ++ +W+PG P P YLDG PGD GFDPL L E
Sbjct: 17 ASLNSGFLGHSSRLGLASSTSRRSLRVEAKGEWLPGLPSPAYLDGKLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL Y ++EL++ RWAML V G+L PE L + A EW G++TY +
Sbjct: 77 DPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLINAPEW--YDAGKSTYFASS--- 131
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ V+EF+ +VE +R + +DP K YPG F+PL F+
Sbjct: 132 ---STLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNFA 188
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E K KEI NGRLA+LA++GF VQ A G GPL+NL HL+DPWHN I
Sbjct: 189 PT----LEAKEKEIANGRLAMLAYLGFSVQH-AVTGKGPLDNLFQHLSDPWHNTI 238
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 142/283 (50%), Gaps = 51/283 (18%)
Query: 3 SNTLMSCGIATTAFPSVLSSSK---SKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYL 59
+N + T FP V +SS ++F A A+ + + W PG P +L
Sbjct: 5 TNAAATSSFMGTRFPDVYTSSGRFVARFGFGGKKAAPKKASKQTSDRPLWYPGAVAPDWL 64
Query: 60 DGSAPGDFGFDPLRLGEVPE---------------------------------------- 79
DGS GD+GFDP LG+ E
Sbjct: 65 DGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATPFQPYS 124
Query: 80 ---NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
L+R++E ELIH RWAMLA G L E L W A + V G ++YLG P+P+
Sbjct: 125 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF 182
Query: 137 GTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKN 195
++ T++ IE L I F+E QR+ E DPEK+ YPGG FDPLG + DP+K ++ EIK+
Sbjct: 183 -SMTTLIWIEVLVIGFIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKH 241
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 242 ARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 283
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 176 -SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 131/246 (53%), Gaps = 31/246 (12%)
Query: 7 MSCGIATTAFPSVLSSSK-SKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPG 65
+S + T+F S SS++ S+ + P ++ + A +W+PG P P YL+GS G
Sbjct: 11 VSSAVCKTSFLSGTSSTRFSRNVQVAAAPISSQSLKVEAKKGEWLPGLPSPAYLNGSLAG 70
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
D GFDPL L E P L Y ++EL + RWAML V G+LVPE L + A W G
Sbjct: 71 DNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLINAPLW--YDAG 128
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------Y 168
+ Y T+ VIEF+ +VE +R S+ +DP K Y
Sbjct: 129 KVEYFAPA------STLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPPGDVGY 182
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG F+PL F + +EYK KEI NGRLA+LAF+G V QS G GP ENL THLAD
Sbjct: 183 PGGIFNPLKFPAN----QEYKEKEIANGRLAMLAFLGMLV-QSKLTGAGPFENLLTHLAD 237
Query: 229 PWHNNI 234
PWH I
Sbjct: 238 PWHTTI 243
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 176 -SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 176 -SSYLGQPLPF-SITTLIWIEALVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++ F+GF V Q+A G GPL N ATHL+DP H I D
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 129/234 (55%), Gaps = 32/234 (13%)
Query: 20 LSSSKSKFFTAVSL-PAAANATSKY-AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
L+ S K VS P+ +N + K A +W+PG P YLDGS PGD GFDPL L E
Sbjct: 23 LTGSSGKLNREVSFRPSTSNNSFKVEAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAED 82
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG 137
PENL+ Y ++EL++ RWAML V G+L+PE + +W G+A Y +
Sbjct: 83 PENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKW--YDAGKAEYFASS---- 136
Query: 138 TLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSK 180
T+ VIEF+ +VE +R + +DP K YPGG F+PL F+
Sbjct: 137 --STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPNECGYPGGIFNPLNFAA 194
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
EE K KE+ NGRLA+LAF+GF VQ + G GP +NL HL+DPWHN I
Sbjct: 195 T----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHLSDPWHNTI 243
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 125/234 (53%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDG+ GD+GFDP LG+ E
Sbjct: 54 WFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDA 113
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 114 DVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDG- 172
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ T+ T++ IE L I ++E QR+ E DPE++ YPGG+ FDPLG + DP+K
Sbjct: 173 -SSYLGQPLPF-TITTLIWIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLAADPEK 230
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E ++ EIK+ RLA++AF+GF VQ +A G G L N ATHL+DP H I D
Sbjct: 231 KETLQLAEIKHARLAMVAFLGFAVQAAA-TGKGRLNNWATHLSDPLHTTIFDTF 283
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 141/273 (51%), Gaps = 57/273 (20%)
Query: 14 TAFPSVLSSS-----KSKFFTAVSLPA-AANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
T P V S+S + F T S P +A TS + W PG P +LDGS GD+
Sbjct: 16 TRLPDVYSNSGRVQARFGFGTKKSAPKRSAKPTSDRPL---WYPGAKAPEWLDGSLVGDY 72
Query: 68 GFDPLRLGEVPE-------------------------------------------NLERY 84
GFDP LG+ E L+R+
Sbjct: 73 GFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRF 132
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 144
+E ELIH RWAMLA G L E L W A + V G ++YLG P+P+ ++ T++
Sbjct: 133 RECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SITTLIW 189
Query: 145 IEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAF 203
IE L I ++E QR+ E DPEK+ YPGG F DPLG ++DP+K ++ EIK+ RLA++AF
Sbjct: 190 IEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAF 249
Query: 204 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236
+GF V Q+A G GPL N ATHL+DP H I D
Sbjct: 250 LGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 281
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 54 WFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTRFEPG 113
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 114 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 172
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG+ FDPLG + DP+K
Sbjct: 173 -SSYLGQPLPF-SMTTLIWIEVLLIGYIEFQRNAELDSEKRLYPGGSYFDPLGLASDPEK 230
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 231 KERLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 283
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 125/234 (53%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP+ LG+ E
Sbjct: 54 WFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPG 113
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + G
Sbjct: 114 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELENG- 172
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 173 -SSYLGQPLPF-SMTTLIWIEVLLIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 230
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 231 KERLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 283
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 126/247 (51%), Gaps = 50/247 (20%)
Query: 39 ATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE---------------- 79
A K S D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 1 AQPKSGFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKN 60
Query: 80 ---------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
L+R++E ELIH RWAMLA G L E L
Sbjct: 61 LAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGIT 120
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA 172
W A + + G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG
Sbjct: 121 WQDAGKVELIEG--SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGT 177
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
FDPLG + DP+K ++ EIK+ RLA++ F+GF V Q+A G GPL N THL+DP H
Sbjct: 178 FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAV-QAAVTGKGPLNNWVTHLSDPLHT 236
Query: 233 NIGDVII 239
I D +
Sbjct: 237 TILDRFL 243
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG E
Sbjct: 52 WYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVS 111
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 112 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG- 170
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T+++IE L I ++E QR+ E DPEK+ YPGG F DPLG + DP+K
Sbjct: 171 -SSYLGQPLPF-SITTLILIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLAADPEK 228
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP H I D +
Sbjct: 229 KATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPLHTTIIDTL 281
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG E
Sbjct: 52 WYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVS 111
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 112 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG- 170
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T+++IE L I ++E QR+ E DPEK+ YPGG F DPLG + DP+K
Sbjct: 171 -SSYLGQPLPF-SITTLILIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLAADPEK 228
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP H I D +
Sbjct: 229 KATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPLHTTIIDTL 281
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 123/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 57 WFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
+TYLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 176 -STYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 234 KATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 123/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 115 WFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFA 174
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 175 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG- 233
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
+TYLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 234 -STYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEK 291
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 292 KATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 344
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 137/273 (50%), Gaps = 52/273 (19%)
Query: 14 TAFPSVLSSSKSKFFTAVSLPAAANATSKYAM-SAD---WMPGEPRPPYLDGSAPGDFGF 69
T P+ + S + A K++ SAD W PG P YLDGS GD+GF
Sbjct: 16 TRLPADVYSKSGRVQARFGFRTKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGF 75
Query: 70 DPLRLGEVPE-------------------------------------------NLERYKE 86
DP LG+ E L+R++E
Sbjct: 76 DPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRE 135
Query: 87 SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIE 146
ELIH RWAMLA G L E L W A + V G ++YLG P+P+ ++ T++ IE
Sbjct: 136 CELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SISTLIWIE 192
Query: 147 FLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
L I ++E QR+ E DPEK+ YPGG F DPLG + DP+K ++ EIK+ RLA++ F+G
Sbjct: 193 VLLIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLG 252
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
F V Q+A G GPL N ATHL+DP H I D +
Sbjct: 253 FAV-QAAVTGKGPLNNWATHLSDPLHTTIIDTL 284
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 137/257 (53%), Gaps = 42/257 (16%)
Query: 7 MSCGIATTAFPSVLSSSKSKFFTAVS---------LPAAANATSKYAMSA---DWMPGEP 54
M+ A T+ + S+S+F T S P+A+ A + +SA +W+PG
Sbjct: 1 MASVTAQTSLAVIRPCSRSRFLTGSSPAKLRPVSRNPSASRAVPAFRVSAKKGEWLPGLA 60
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV 114
P YL+GS PGD GFDPL L E PENL+ + ++EL + RWAML V G+L+PE +
Sbjct: 61 SPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGII 120
Query: 115 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKK 166
A +W G+ Y + T+ VIEF+ +VE +R S+ +DP K
Sbjct: 121 NAPQW--YDAGKQEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 172
Query: 167 K---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q + G G
Sbjct: 173 SYRLPPNEVGYPGGIFNPLNFAPS----LEAKEKEIANGRLAMLAFLGFLIQHN-LTGKG 227
Query: 218 PLENLATHLADPWHNNI 234
P +NL HL+DPWHN I
Sbjct: 228 PFDNLLQHLSDPWHNTI 244
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 125/232 (53%), Gaps = 48/232 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 53 WFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESA 112
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 113 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG- 171
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG F DPLG ++DP+K
Sbjct: 172 -SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEK 229
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236
++ EIK+ RLA++AF+GF V Q+A G GPL N ATHL+DP H I D
Sbjct: 230 KAVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 280
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 133/266 (50%), Gaps = 53/266 (19%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
SS S FTA A+ K A + W PG P YLDGS GD+GFDP LG+
Sbjct: 23 SSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGK 82
Query: 77 VPE-------------------------------------------NLERYKESELIHCR 93
E L+R++E ELIH R
Sbjct: 83 PAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGR 142
Query: 94 WAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFV 153
WAMLA G + E L W A + V G ++YLG P+P+ ++ T++ IE L I ++
Sbjct: 143 WAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYI 199
Query: 154 EHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
E QR+ E D EK+ YPGG F DPLG + DP K + ++ EIK+ RLA++ F+GF VQ +A
Sbjct: 200 EFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA 259
Query: 213 YPGTGPLENLATHLADPWHNNIGDVI 238
G GPL N ATHL+DP H I D
Sbjct: 260 -TGKGPLNNWATHLSDPLHTTIIDTF 284
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 130/243 (53%), Gaps = 35/243 (14%)
Query: 14 TAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFG 68
T+ P L+ S + FT++ A ++ A +W+PG P YL GS GD G
Sbjct: 17 TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNG 76
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQAT 128
FDPL L E PENL+ + ++EL++ RWAML V G+L+PE + EW G+
Sbjct: 77 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQ 134
Query: 129 YLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGG 171
Y + T+ VIEF+ +VE +R S+ +DP K+ YPGG
Sbjct: 135 YFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG 188
Query: 172 AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
F+PL F+ +E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+DPWH
Sbjct: 189 IFNPLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWH 243
Query: 232 NNI 234
N I
Sbjct: 244 NTI 246
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 123/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 55 WFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAV 114
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G + E L W A + V G
Sbjct: 115 DPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG- 173
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L + ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 174 -SSYLGQPLPF-SISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEK 231
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 232 KAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 284
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 132/235 (56%), Gaps = 33/235 (14%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
L+ + SK +S+ A+++ + + A +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 23 LAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLGLAE 82
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL + ++EL++ RWAML V G+L+PE + A +W G+A Y +
Sbjct: 83 DPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS--- 137
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ VIEF+ +VE +R + +DP K+ YPGG F+PL F+
Sbjct: 138 ---STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFA 194
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E K KE+ NGRLA+LAF+GF +Q + G GP ENL H++DPWHN I
Sbjct: 195 PT----IEAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFENLLQHISDPWHNTI 244
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 55 WFPGAKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEA 114
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 115 APKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 173
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 174 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEK 231
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 232 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 284
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 117/210 (55%), Gaps = 30/210 (14%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V G
Sbjct: 42 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 101
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +R
Sbjct: 102 MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVIEFILFHYVEIRRWQDI 153
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LAF+
Sbjct: 154 KNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFL 209
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
F +Q + G GP +NL HL+DPWHN I
Sbjct: 210 AFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 238
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS GD+GFDP LG+ E
Sbjct: 57 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVA 116
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 117 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG- 175
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K
Sbjct: 176 -SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ EIK+ RLA++ F+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 125/235 (53%), Gaps = 49/235 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 51 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTELA 110
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 111 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG- 169
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAF-VEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQ 183
++YLG P+P+ ++ T++ IE L I + VE QR+ E DPEK+ YPGG+F DPLG + DP+
Sbjct: 170 -SSYLGQPLPF-SITTLIWIEVLVIGYIVEFQRNAELDPEKRLYPGGSFFDPLGLAADPE 227
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
K ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 228 KKATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 281
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 136/251 (54%), Gaps = 36/251 (14%)
Query: 7 MSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLD 60
M+ A T ++LSS+ KS F S A T++ + A+ W+PG P P YL+
Sbjct: 1 MASDTARTPVAALLSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GS PGD GFDPL L E PENL + ++EL++ RWAML V G+L+PE L + A +W
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQW- 119
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK----- 167
G+ATY + T+ VIEF+ +VE ++ + +DP K
Sbjct: 120 -YDAGKATYFASS------NTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFKSYRLPS 172
Query: 168 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPG F+PL F + E K KE+ NGRLA+LAF+GF VQ + GP +NL
Sbjct: 173 DECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQ-KGPFDNLL 227
Query: 224 THLADPWHNNI 234
HL+DPWHN I
Sbjct: 228 QHLSDPWHNTI 238
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 127/245 (51%), Gaps = 41/245 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATS-----------KYAMSADWMPGEPRPPYLDGSAPGD 66
S S +S F T S+ A K +W+PG P YL+GS PGD
Sbjct: 13 SCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGD 72
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
GFDPL L E PE+L+ Y ++EL++ RWAML V G+L+PE L ++ +W G+
Sbjct: 73 NGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKW--YDAGK 130
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YP 169
Y + T+ VIEF+ +VE +R S+ +DP K YP
Sbjct: 131 VEYFASS------STLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYP 184
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
GG F+PL FS E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+DP
Sbjct: 185 GGIFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDP 239
Query: 230 WHNNI 234
WHN I
Sbjct: 240 WHNTI 244
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 117/210 (55%), Gaps = 30/210 (14%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V G
Sbjct: 50 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 109
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +R
Sbjct: 110 MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVIEFILFHYVEIRRWQDI 161
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LAF+
Sbjct: 162 KNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFL 217
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
F +Q + G GP +NL HL+DPWHN I
Sbjct: 218 AFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 246
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 127/236 (53%), Gaps = 35/236 (14%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAM----SADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A+++++ ++ +W+PG P YLDGS GD GFDPL L E
Sbjct: 17 ASLKSGFLGHSSRLGRASSSTRRSLRVEAKGEWLPGLASPAYLDGSLAGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL Y ++EL++ RWAML V G+LVPE L + A +W G++TY +
Sbjct: 77 DPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIINAPQW--YDAGKSTYFASS--- 131
Query: 137 GTLPTILVIEFLSIAFVEHQR---------SMEKDPEKKK---------YPGGAFDPLGF 178
T+ VIEF+ +VE +R + +DP K YPG F+PL F
Sbjct: 132 ---STLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIFKNYSLPPHECGYPGSVFNPLNF 188
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ E K KE+ NGRLA+LAF+GF VQ G GP ENL HL DPWHN I
Sbjct: 189 ----EPTLEAKEKELANGRLAMLAFLGFMVQH-GITGKGPFENLLQHLFDPWHNTI 239
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 131/242 (54%), Gaps = 42/242 (17%)
Query: 22 SSKSKFFTA----------VSLPAAA--NATSKYAMSADWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T V LP+ + N+ A +W+PG P YL+GS PGD GF
Sbjct: 17 ASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGLASPAYLNGSLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATY 129
DPL L E PENL+ + ++EL++ RWAML V G+L+PE + +W G+ Y
Sbjct: 77 DPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIINVPKW--YDAGKQEY 134
Query: 130 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGA 172
+ T+ VIEF+ +VE +R S+ +DP K+ YPGG
Sbjct: 135 FASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI 188
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP +NL HL+DPWHN
Sbjct: 189 FNPLNFAPT----AEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHLSDPWHN 243
Query: 233 NI 234
I
Sbjct: 244 TI 245
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGNWV 114
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML G ++PEA G +
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 115 QAQE-W-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
+ W + GG +Y G +P + + V E + + E+ R+ D E K
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLDFEDKL 223
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENLA HL+
Sbjct: 224 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLAAHLS 282
Query: 228 DPWHNNIGDVI 238
DP+ NN+ V+
Sbjct: 283 DPFGNNLLTVL 293
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 33/235 (14%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
L+ + SK +S+ A+++ + + A +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 23 LAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLGLAE 82
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL + ++EL++ RWAML V G+L+PE + A +W G+A Y +
Sbjct: 83 DPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS--- 137
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ VIEF+ +VE +R + +DP K+ YPGG F+PL F+
Sbjct: 138 ---STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFA 194
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E K KE+ NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 195 PT----IEAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFDNLLQHISDPWHNTI 244
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 131/235 (55%), Gaps = 33/235 (14%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
LS S SK V+ +++ + + + A +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 23 LSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAE 82
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL+ + ++EL++ RWAML V G+L+PE + +W G+ Y +
Sbjct: 83 DPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPKW--YDAGKEEYFASS--- 137
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F+
Sbjct: 138 ---STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 194
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E K KE+ NGRLA+LAF+GF +Q + G GP +NL HL+DPWHN I
Sbjct: 195 PT----LEAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFDNLLQHLSDPWHNTI 244
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 130/236 (55%), Gaps = 34/236 (14%)
Query: 20 LSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLG 75
L+ S K VS P+ +++ + + + A W+PG P YLDGS PGD GFDPL L
Sbjct: 23 LTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGLASPDYLDGSLPGDNGFDPLGLA 82
Query: 76 EVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVP 135
E PENL+ + ++EL++ RWAML V G+L+PE + +W G++ Y +
Sbjct: 83 EDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKW--YDAGKSEYFASS-- 138
Query: 136 WGTLPTILVIEFLSIAFVEHQR--------SMEKD---------PEKKKYPGGAFDPLGF 178
T+ VIEF+ +VE +R S+ +D P K YPGG F+PL F
Sbjct: 139 ----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNKCGYPGGIFNPLNF 194
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ EE K KE+ NGRLA+LAF+GF VQ + G GP +NL HL DPWHN I
Sbjct: 195 APT----EEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFDNLLQHLFDPWHNTI 245
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 135/251 (53%), Gaps = 36/251 (14%)
Query: 7 MSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLD 60
M+ A T ++ SS+ KS F S A T++ + A+ W+PG P P YL+
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GS PGD GFDPL L E PENL + ++EL++ RWAML V G+L+PE L + A +W
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQW- 119
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK----- 167
G+ATY + T+ VIEF+ +VE +R + +DP K
Sbjct: 120 -YDAGKATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPP 172
Query: 168 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPG F+PL F + E K KE+ NGRLA+LAF+GF VQ + GP +NL
Sbjct: 173 HECGYPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNV-TQKGPFDNLL 227
Query: 224 THLADPWHNNI 234
HL+DPWHN I
Sbjct: 228 QHLSDPWHNTI 238
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 128/235 (54%), Gaps = 34/235 (14%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAM----SADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A+++++ ++ +W+PG P P YL+GS PGD GFDPL L E
Sbjct: 17 ASLKSGFLGHSSRLGRASSSTRRSLRVEAKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL Y ++EL++ RWAML V G+L+PE L + A W G++TY +
Sbjct: 77 DPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIINAPLW--YDAGKSTYFASS--- 131
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ VIEF+ +VE +R + +DP K YPG F+PL F
Sbjct: 132 ---STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPHECGYPGSVFNPLNF- 187
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ E K KE+ NGRLA+LAF+ F VQ G GP ENL HL+DPWHN I
Sbjct: 188 ---EPTLEAKEKELANGRLAMLAFLAFMVQH-GITGKGPFENLLQHLSDPWHNTI 238
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 176
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 177 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 287
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 118/208 (56%), Gaps = 30/208 (14%)
Query: 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL 103
A +W+PG P P YL+GS PGD GFDPL L E PENL Y ++EL++ RWAML V G+L
Sbjct: 51 AKKGEWLPGLPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 110
Query: 104 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 157
+PE + A +W G+A Y + T+ VIEF+ +VE +R
Sbjct: 111 LPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKN 162
Query: 158 --SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
+ +DP K+ YPGG F+PL F+ E K KEI NGRLA+LAF+GF
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGF 218
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
VQ + G GP +NL H++DPWHN I
Sbjct: 219 IVQHNV-TGKGPFDNLLQHISDPWHNTI 245
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 176
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 177 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 287
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 125/235 (53%), Gaps = 48/235 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD+GFDP LG+ E
Sbjct: 56 WFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGG 115
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E+L W A + + G
Sbjct: 116 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELIEG- 174
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG F DPLG + DP+K
Sbjct: 175 -SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEK 232
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
++ EIK+ RLA++ F+GF V Q+A G GPL N ATHL+DP H I D +
Sbjct: 233 KAVLQLAEIKHARLAMIGFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIIDNVF 286
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 127/245 (51%), Gaps = 41/245 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATS-----------KYAMSADWMPGEPRPPYLDGSAPGD 66
S S +S F T S+ A K +W+PG P YL+GS PGD
Sbjct: 13 SCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGD 72
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
GFDPL L E P++L+ Y ++EL++ RWAML V G+L+PE L ++ +W G+
Sbjct: 73 NGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKW--YDAGK 130
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YP 169
Y + T+ VIEF+ +VE +R S+ +DP K YP
Sbjct: 131 VEYFASS------STLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYP 184
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
GG F+PL FS E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+DP
Sbjct: 185 GGIFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDP 239
Query: 230 WHNNI 234
WHN I
Sbjct: 240 WHNTI 244
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGNWV 114
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML G ++PEA G +
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYC 164
Query: 115 QAQE-W-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
+ W + GG +Y G +P + + V E + + E+ R+ D E K
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLDFEDKL 223
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENLA HL+
Sbjct: 224 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLAAHLS 282
Query: 228 DPWHNNIGDVI 238
DP+ NN+ V+
Sbjct: 283 DPFGNNLLTVL 293
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 128/235 (54%), Gaps = 34/235 (14%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A T++ + A+ W+PG P P YL+GS PGD GFDPL L E
Sbjct: 17 ASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL + ++EL++ RWAML V G+L+PE L + A +W G+ATY +
Sbjct: 77 DPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQW--YDAGKATYFASS--- 131
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ VIEF+ +VE +R + +DP K YPG F+PL F
Sbjct: 132 ---STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNF- 187
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ E K KE+ NGRLA+LAF+GF VQ + GP +NL HL+DPWHN I
Sbjct: 188 ---EPTLEAKEKELANGRLAMLAFLGFLVQHNV-TQKGPFDNLLQHLSDPWHNTI 238
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGNWV 114
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML G ++PEA G +
Sbjct: 80 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 139
Query: 115 QAQE-W-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
+ W + GG +Y G +P + + V E + + E+ R+ D E K
Sbjct: 140 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLDFEDKL 198
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENLA HL+
Sbjct: 199 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLAAHLS 257
Query: 228 DPWHNNIGDVI 238
DP+ NN+ V+
Sbjct: 258 DPFGNNLLTVL 268
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 115/207 (55%), Gaps = 30/207 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P YLDGS GD GFDPL L E PE+L + ++EL++ RWAML V G+L+PE L
Sbjct: 49 WLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVL 108
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ A EW G+ TY + T+ VIEF+ +VE +R S+
Sbjct: 109 TKAGLLNAPEW--YDAGKETYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVN 160
Query: 161 KDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP K YPG F+PL F+ E K KE+ NGRLA+LAF+GF VQ +
Sbjct: 161 QDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LENKEKELANGRLAMLAFLGFLVQHN 216
Query: 212 AYPGTGPLENLATHLADPWHNNIGDVI 238
G GP ENL HLADPWHN I I
Sbjct: 217 V-TGKGPFENLQQHLADPWHNTIIQTI 242
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 124/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 59 WYPGAISPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 118
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 119 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L + ++E QR+ E D EK+ YPGG FDPLG + DP+K
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKYFDPLGLAADPEK 235
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 236 RAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 288
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGNWV 114
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML G ++PEA G +
Sbjct: 105 PEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 115 QAQE-W-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
+ W + GG +Y G +P + + V E + + E+ R+ D E K
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV-VAEVILVGGAEYYRATNGLDFEDKL 223
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENLA HL+
Sbjct: 224 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLAAHLS 282
Query: 228 DPWHNNIGDVI 238
DP+ NN+ V+
Sbjct: 283 DPFGNNLLTVL 293
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 136/249 (54%), Gaps = 37/249 (14%)
Query: 7 MSC-GIATTAFPSVLSSSKSKFFTAV---SLPAAANATSKYAMSADWMPGEPRPPYLDGS 62
+SC + +AF + SS S+ V S PA A + K +W+PG P YL+GS
Sbjct: 12 VSCPSVCRSAF--LTGSSVSRLARRVRPGSNPAPARSF-KVEAKGEWLPGLSSPSYLNGS 68
Query: 63 APGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV 122
PGD GFDPL L E PE+L+ Y ++EL++ RWAML V G+L+PE L + +W
Sbjct: 69 LPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKW--Y 126
Query: 123 PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK------- 167
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 127 DAGKVEYFASS------STLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNE 180
Query: 168 --YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
YPGG F+PL FS E K KE+ NGRLA+LAF+GF VQ + G GP +NL H
Sbjct: 181 VGYPGGIFNPLNFSPS----MEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFDNLLQH 235
Query: 226 LADPWHNNI 234
L+DPWHN I
Sbjct: 236 LSDPWHNTI 244
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 129/246 (52%), Gaps = 42/246 (17%)
Query: 22 SSKSKFFTAVSLPAAANATSK------------YAMSADWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T S T + A +W+PG P YL+G+ PGD GF
Sbjct: 17 ASKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATY 129
DPL L E PENL Y ++EL++ RWAML V G+L+PE + A +W G++ Y
Sbjct: 77 DPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKSEY 134
Query: 130 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGA 172
+ T+ VIEF+ +VE +R S+ +DP K+ YPG
Sbjct: 135 FASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPQHECGYPGSV 188
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+DPWHN
Sbjct: 189 FNPLNFAPT----LEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHLSDPWHN 243
Query: 233 NIGDVI 238
I + I
Sbjct: 244 TIINTI 249
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 135/255 (52%), Gaps = 35/255 (13%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKF---FTAVSLPAAANATSKY-AMSADWMPGEPRP 56
MA++T M I + + LS S SK AV+ P+ A K A +W PG P
Sbjct: 1 MAAST-MQASIGVSCPSTFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASP 59
Query: 57 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQA 116
YL+GS PGD GFDPL L P NL+ Y ++EL + RWAM+ V G+L+PE L + A
Sbjct: 60 GYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINA 119
Query: 117 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKK-- 166
W G+ Y T+ VIEFL +VE +R S+ +DP K
Sbjct: 120 PLW--YDAGKVEYFAPA------STLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGY 171
Query: 167 -------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
YPGG F+PL F + EEYK KE+ NGRLA+LAF+GF + QS GP
Sbjct: 172 SLPPNEVGYPGGIFNPLNFPAN----EEYKEKELANGRLAMLAFLGFII-QSNVTHQGPF 226
Query: 220 ENLATHLADPWHNNI 234
ENL THL+DPWH+ I
Sbjct: 227 ENLLTHLSDPWHHTI 241
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 135/255 (52%), Gaps = 35/255 (13%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKF---FTAVSLPAAANATSKY-AMSADWMPGEPRP 56
MA++T M I + + LS S SK AV+ P+ A K A +W PG P
Sbjct: 1 MAAST-MQASIGVSCPSTFLSGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASP 59
Query: 57 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQA 116
YL+GS PGD GFDPL L P NL+ Y ++EL + RWAM+ V G+L+PE L + A
Sbjct: 60 GYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINA 119
Query: 117 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKK-- 166
W G+ Y T+ VIEFL +VE +R S+ +DP K
Sbjct: 120 PLW--YDAGKVEYFAPA------STLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGY 171
Query: 167 -------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
YPGG F+PL F + EEYK KE+ NGRLA+LAF+GF + QS GP
Sbjct: 172 SLPPNEVGYPGGIFNPLNFPAN----EEYKEKELANGRLAMLAFLGFII-QSNVTHQGPF 226
Query: 220 ENLATHLADPWHNNI 234
ENL THL+DPWH+ I
Sbjct: 227 ENLLTHLSDPWHHTI 241
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 118/212 (55%), Gaps = 30/212 (14%)
Query: 40 TSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
+ K +W+PG P P YLDGS GD GFDPL L E PENL + ++EL++ RWAML V
Sbjct: 43 SXKAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 102
Query: 100 PGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
G+L+PE L + A +W G++ Y + T+ V+EF+ +VE +R
Sbjct: 103 AGMLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVVEFILFXYVEIRRWQ 154
Query: 158 ------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LA
Sbjct: 155 DIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLAMLA 210
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
F+GF +Q + G GP +NL HL+DPWHN I
Sbjct: 211 FLGFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 241
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 124/238 (52%), Gaps = 33/238 (13%)
Query: 21 SSSKSKFFTAVSLPAAANATSK---YAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+S +F A +T + W+PG P YLDGS GD GFDPL L E
Sbjct: 1 SASSPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQSPAYLDGSLAGDNGFDPLALAED 60
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG 137
PE+L + ++EL++ RWAML V G+L+PE L + A EW G+ TY +
Sbjct: 61 PEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEW--YDAGKETYFASS---- 114
Query: 138 TLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSK 180
T+ VIEF+ +VE +R S+ +DP K YPG F+PL F+
Sbjct: 115 --STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAP 172
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
E K KE+ NGRLA+LAF+GF VQ + G GP ENL HLADPWHN I I
Sbjct: 173 T----LENKEKELANGRLAMLAFLGFLVQHNV-TGKGPFENLQQHLADPWHNTIIQTI 225
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 113/195 (57%), Gaps = 14/195 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV- 114
P YL G PGD+G+DP L + PE+ +RY+ ELIH RWAML G ++PEA V
Sbjct: 68 PAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 127
Query: 115 --QAQEWAA----VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----P 163
+A W + G Y G VP L ++ E + + E+ RS KD
Sbjct: 128 GPEAVWWKTGALLLEGDSIKYFGATVPI-NLAAAVIAEVILVGGAEYYRSTNKDVYGLQD 186
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ +PGGAFDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENLA
Sbjct: 187 LDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLA 245
Query: 224 THLADPWHNNIGDVI 238
HL+DP+ NN+ VI
Sbjct: 246 AHLSDPFGNNLLTVI 260
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 114/206 (55%), Gaps = 29/206 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+HCRWAML GI +PEAL
Sbjct: 5 WFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEAL 64
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G Y P T+ VIE + A+ E +R +
Sbjct: 65 TKAGILNTPSWNVA--GDQQYFADPT------TLFVIELILFAWAEGRRWADIVNPGCVN 116
Query: 161 KDP---------EKKKYPGGA-FDPLGF--SKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
DP YPGG FDPLG+ +KD +K +E + KEIKNGRLA+LA +G V
Sbjct: 117 VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLAVLG-AV 175
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y TGP++NL HLADP HN I
Sbjct: 176 VQANYTHTGPIDNLLAHLADPGHNTI 201
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 118/210 (56%), Gaps = 30/210 (14%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P YL+GS PGD GFDPL L E PE+L+ Y ++EL++ RWAML V G
Sbjct: 41 KVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAG 100
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + +W G+ Y + T+ VIEF+ +VE +R
Sbjct: 101 MLIPEVLTSIGLINVPKW--YDAGKVEYFASS------STLFVIEFILFHYVELRRWQDI 152
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S+ +DP K+ YPGG F+PL FS E K KE+ NGRLA+LAF+
Sbjct: 153 KYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPS----MEAKEKELANGRLAMLAFL 208
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GF VQ + G GP +NL HL+DPWHN I
Sbjct: 209 GFVVQHNV-TGKGPFDNLLQHLSDPWHNTI 237
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+GFDP L + P + ++Y+ ELIH RWAML G ++PEA N
Sbjct: 78 PEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLGAAGFVIPEAF---NKFG 134
Query: 116 AQ-----EW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
AQ W + GG Y G +P + +L E + + E+ RS+
Sbjct: 135 AQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLA-EVILVGGAEYYRSINNLGLD 193
Query: 166 KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
+ +PGG FDPLG +KDP F KVKEIKNGRLA+ A +GF +Q A G GP+ENL TH
Sbjct: 194 RLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAMLGFFIQAYA-TGEGPVENLTTH 252
Query: 226 LADPWHNNIGDVI 238
L+DP+ NN+ VI
Sbjct: 253 LSDPFGNNLLSVI 265
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 117/210 (55%), Gaps = 30/210 (14%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P P YLDGS GD GFDPL L E PENL + ++EL++ RWAML V G
Sbjct: 45 KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + A +W G++ Y + T+ V+EF+ +VE +R
Sbjct: 105 MLIPEVLTKAGLINAPQW--YDAGKSEYFASS------STLFVVEFILFHYVEIRRWQDI 156
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LAF+
Sbjct: 157 KNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFL 212
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GF +Q + G GP +NL HL+DPWHN I
Sbjct: 213 GFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 241
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 123/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 176
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPL + DP+K
Sbjct: 177 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLSLAADPEK 234
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIIDTF 287
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 30/208 (14%)
Query: 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL 103
A +W+PG P YL+GS PGD GFDPL L E PENL+ + ++EL++ RWA L V G+L
Sbjct: 51 AKKGEWLPGLASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGML 110
Query: 104 VPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------ 157
+PE L + +W G+A Y + T+ VIEF+ +VE +R
Sbjct: 111 LPEVLTNIGLINVPKW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKN 162
Query: 158 --SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
S+ +DP K+ YPGG F+PL F+ EE K +E+ NGRLA+LAF+GF
Sbjct: 163 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----EEAKERELANGRLAMLAFLGF 218
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
VQ + G GP +NL HL+DPWHN I
Sbjct: 219 IVQHNV-TGKGPFDNLLQHLSDPWHNTI 245
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 113/194 (58%), Gaps = 13/194 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV- 114
P YL G PGD+G+DP L + PE+ +RY+ ELIH RWAML G ++PEA V
Sbjct: 26 PEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 85
Query: 115 --QAQEWAA----VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP----E 164
+A W + G Y G VP L ++ E + + E+ RS K P
Sbjct: 86 GPEAVWWKTGALLLEGDSIKYFGATVPL-NLAAAVIAEVILVGGAEYYRSTNKSPLGSDL 144
Query: 165 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
+ +PGGAFDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENL+
Sbjct: 145 DRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLSA 203
Query: 225 HLADPWHNNIGDVI 238
HL+DP+ NN+ VI
Sbjct: 204 HLSDPFGNNLLTVI 217
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 127/235 (54%), Gaps = 34/235 (14%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
+S KS F S A T++ + A+ W+PG P P YL+GS PGD GFDPL L E
Sbjct: 17 ASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLPGDNGFDPLGLAE 76
Query: 77 VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPW 136
PENL + ++EL++ RWAML V G+L+PE L + A +W G+ATY +
Sbjct: 77 DPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQW--YDAGKATYFASS--- 131
Query: 137 GTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFS 179
T+ VIEF+ VE +R + +DP K YPG F+PL F
Sbjct: 132 ---STLFVIEFILFHSVEIRRWQDIKNPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNF- 187
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ E K KE+ NGRLA+LAF+GF VQ + GP +NL HL+DPWHN I
Sbjct: 188 ---EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQ-KGPFDNLLQHLSDPWHNTI 238
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGNWV 114
P YL+G PGD+G+DP L + PEN ++Y+ ELIH RWAML G ++PEA G +
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 115 QAQE-W-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
+ W + GG +Y G + + + V E + + E+ R+ D E K
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIHINLIAAV-VAEVILVGGAEYYRATNGLDFEDKL 223
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF V Q+ G GP+ENLA HL+
Sbjct: 224 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFV-QAYVTGEGPVENLAAHLS 282
Query: 228 DPWHNNIGDVI 238
DP+ NN+ V+
Sbjct: 283 DPFGNNLLTVL 293
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 128/246 (52%), Gaps = 42/246 (17%)
Query: 22 SSKSKFFTAVSLPAAANATSK------------YAMSADWMPGEPRPPYLDGSAPGDFGF 69
+SKS+F T S T + A +W+PG P YL+G+ PGD GF
Sbjct: 17 TSKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGF 76
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATY 129
DPL L E PENL Y ++EL++ RWAML V G+L+PE + A +W G++ Y
Sbjct: 77 DPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQW--YDAGKSEY 134
Query: 130 LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGA 172
+ T+ VIEF+ +VE +R + +DP K+ YPG
Sbjct: 135 FASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSV 188
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
F+PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HL+DPWHN
Sbjct: 189 FNPLNFAPT----LEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHLSDPWHN 243
Query: 233 NIGDVI 238
I + I
Sbjct: 244 TIINTI 249
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 124/228 (54%), Gaps = 35/228 (15%)
Query: 35 AAANATSKYAM-----SADWMPGEPRPPYLDGSAP----GDFGFDPLRLGEVPENLERYK 85
AA +A+S+ ++ W+PG P +LD A G+FGFDPL LG+ P L Y+
Sbjct: 11 AARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQ 70
Query: 86 ESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 145
++ELIHCR AM V GIL+P L + EW G+ + PWG+L L +
Sbjct: 71 QAELIHCRTAMAGVAGILIPGLLTKAGALNVPEW--YDAGKVAIENSFAPWGSL---LAV 125
Query: 146 EFLSIAFVEHQRSME--------------------KDPEKKKYPGGAFDPLGFSKDPQKF 185
+ FVE +R + K + YPGG FDPLG SK+ K+
Sbjct: 126 QLFLCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSKEADKW 185
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
++K+KE+KNGRLA+LAF+GF Q+ A G GP++NLA HL DPWH N
Sbjct: 186 ADWKLKEVKNGRLAMLAFLGFVAQKYA-TGAGPVDNLAAHLKDPWHVN 232
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 133/243 (54%), Gaps = 35/243 (14%)
Query: 14 TAFPSVLSSSKSKFFTAVSLPA--AANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFG 68
T+ P L+ S + +S + +++ T+ + + A +W+PG P YL+GS GD G
Sbjct: 17 TSKPRFLTGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPGLASPGYLNGSLAGDNG 76
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQAT 128
FDPL L E PENL+ + ++EL++ RWAML V G+L+PE + EW G+
Sbjct: 77 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQ 134
Query: 129 YLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGG 171
Y + T+ VIEF+ +VE +R S+ +DP K+ YPGG
Sbjct: 135 YFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 188
Query: 172 AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
F+PL F+ E K KE+ NGRLA+LAF+GF +Q + G GP ENL HL+DPWH
Sbjct: 189 IFNPLNFAPTV----EAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFENLLQHLSDPWH 243
Query: 232 NNI 234
N I
Sbjct: 244 NTI 246
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 130/245 (53%), Gaps = 35/245 (14%)
Query: 12 ATTAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGD 66
TT+ P L+SS + F ++ + ++ A +W+PG P YL GS GD
Sbjct: 16 CTTSKPRFLTSSSGRLNRDLTFKSIGSSSKTSSFKVEAKKGEWLPGLASPDYLTGSLAGD 75
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE + EW G+
Sbjct: 76 NGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIINVPEW--YDAGK 133
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YP 169
Y + T+ VIEF+ +VE +R S+ +DP K+ YP
Sbjct: 134 EQYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYP 187
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
GG F+PL F+ E K KEI NGRLA+LAF+GF VQ + G GP ENL HL+DP
Sbjct: 188 GGIFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDP 242
Query: 230 WHNNI 234
WHN I
Sbjct: 243 WHNTI 247
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 128/255 (50%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 25 SLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL LG PE+L ++EL+HCRWAML GI +PE L + W G
Sbjct: 85 DFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--G 142
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
+ Y T+ V+E I + E +R + DP Y
Sbjct: 143 ELEYFTDTT------TLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 255
Query: 227 ADPWHNNIGDVIIPR 241
ADP H I P+
Sbjct: 256 ADPGHATIFAAFTPK 270
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 124/240 (51%), Gaps = 33/240 (13%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
A++ P L S + A SL A W+PG P YLDGS GD GFDP
Sbjct: 17 ASSPSPRFLGDSGRQLGLAKSL---ARRDVAVQAKGQWLPGLASPAYLDGSLAGDNGFDP 73
Query: 72 LRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLG 131
L L E P +L + ++EL++ RWAML V G+L+PE L + A EW G+ TY
Sbjct: 74 LALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLSAPEW--YDAGKETYFA 131
Query: 132 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFD 174
+ T+ V+EF+ +VE +R S+ +DP K YPG F+
Sbjct: 132 SS------STLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPDHDCGYPGSVFN 185
Query: 175 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
PL F+ E K KE+ NGRLA+LAF+GF VQ + G GP ENL HLADPWHN I
Sbjct: 186 PLNFAPT----LENKEKELANGRLAMLAFLGFLVQHNV-TGKGPFENLMQHLADPWHNTI 240
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 128/248 (51%), Gaps = 34/248 (13%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPL 72
+ LS K K T + P A +T+ +A+ W PG PP+LDGS PGDFGFDPL
Sbjct: 32 AFLSGRKLKVNT-FTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPL 90
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGT 132
L PE+L ++EL+HCRWAML GI +PE L + W G Q + T
Sbjct: 91 GLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA-GEQEYFTDT 149
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FD 174
T+ ++E + I + E +R S+ DP YPGG FD
Sbjct: 150 -------TTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFD 202
Query: 175 PLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
PLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H
Sbjct: 203 PLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHAT 261
Query: 234 IGDVIIPR 241
+ P+
Sbjct: 262 VFAAFTPK 269
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 123/246 (50%), Gaps = 31/246 (12%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S L K + T S AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 33 SFLRGKKLRLRTYTSPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 92
Query: 75 GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 134
G PE L ++EL+HCRWAML GI +PE L + W + G+ Y
Sbjct: 93 GSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSA--GEVEYFTDTT 150
Query: 135 PWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPL 176
T+ ++E I + E +R + DP YPGG FDPL
Sbjct: 151 ------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
G+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 205 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATVF 263
Query: 236 DVIIPR 241
P+
Sbjct: 264 AAFTPK 269
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 130/244 (53%), Gaps = 30/244 (12%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
A TA +KS T+ S A N + A + W PG P YLDG+ GD+GFDP
Sbjct: 6 AKTALAGTRVVAKS---TSRSSARAGNVVVR-AERSLWAPGVASPKYLDGNLAGDYGFDP 61
Query: 72 LRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLG 131
+ LG PE L Y+++EL + RWAML V GIL E + W + A +P ++ G
Sbjct: 62 MGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIINPEQWWYS---AGMPENLPSFDG 118
Query: 132 TPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGAFD 174
V G IL EFL + FVE +R S+ DP + YPGG FD
Sbjct: 119 NKVNMG---GILAWEFLLMHFVEVRRWQDIRKKDSVNADPFNPNLKVPNPEMGYPGGPFD 175
Query: 175 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
PLGFSK F+E + KEIKNGRLA++AFV F +Q A G GPL NL HLA P+ NN+
Sbjct: 176 PLGFSKG--NFKEVQTKEIKNGRLAMVAFVAFTIQAQAT-GKGPLANLTDHLASPFSNNV 232
Query: 235 GDVI 238
G I
Sbjct: 233 GANI 236
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 123/246 (50%), Gaps = 31/246 (12%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S L K + T S AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 33 SFLRGEKLRLRTYTSPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 92
Query: 75 GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 134
G PE L ++EL+HCRWAML GI +PE L + W + G+ Y
Sbjct: 93 GSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSA--GEVEYFTDTT 150
Query: 135 PWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPL 176
T+ ++E I + E +R + DP YPGG FDPL
Sbjct: 151 ------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
G+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 205 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATVF 263
Query: 236 DVIIPR 241
P+
Sbjct: 264 AAFTPK 269
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 30/210 (14%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P P YLDGS GD GFDPL L E PENL + ++EL++ RWAML V G
Sbjct: 45 KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + A +W ++ Y + T+ V+EF+ +VE +R
Sbjct: 105 MLIPEVLTKAGLINAPQW--YDASKSEYFASS------STLFVVEFILFHYVEIRRWQDI 156
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S+ +DP K YPG F+PL F+ E K KE+ NGRLA+LAF+
Sbjct: 157 KNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFL 212
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GF +Q + G GP +NL HL+DPWHN I
Sbjct: 213 GFLIQHNV-TGKGPFDNLLQHLSDPWHNTI 241
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 123/228 (53%), Gaps = 35/228 (15%)
Query: 35 AAANATSKYAM-----SADWMPGEPRPPYLDG----SAPGDFGFDPLRLGEVPENLERYK 85
AA +A+S+ ++ W+PG P +LD + G+FGFDPL LG+ P L Y+
Sbjct: 5 AARSASSRKSVVTCVARQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQ 64
Query: 86 ESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 145
++ELIHCR AM V GIL+P L + EW G+ + PWGTL L +
Sbjct: 65 QAELIHCRTAMTGVAGILIPGLLTKAGALNVPEW--YDAGKVAIENSFAPWGTL---LAV 119
Query: 146 EFLSIAFVEHQR--------------------SMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
+ FVE +R S K + YPGG FDPLG SK+ K+
Sbjct: 120 QLFLCGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSKEADKW 179
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
++K+KE+KNGRLA+LAF+GF Q+ A G GP++NL HL DPWH N
Sbjct: 180 ADWKLKEVKNGRLAMLAFLGFVAQKYA-TGAGPVDNLVAHLKDPWHVN 226
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 122/232 (52%), Gaps = 48/232 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDP LG+ E
Sbjct: 54 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFA 113
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 114 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG- 172
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ ++ IE + I ++E QR+ E DPEK+ YPGG F DPLG + DP+K
Sbjct: 173 -SSYLGQPLPF-SITALIWIEAVIIGYIEFQRNAELDPEKRLYPGGQFFDPLGLASDPEK 230
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236
++ EIK+ RLA++AF+GF V Q+ G GPL N ATHL+DP H I D
Sbjct: 231 KATLQLAEIKHARLAMVAFLGFAV-QAWVTGKGPLNNWATHLSDPLHTTIID 281
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 128/255 (50%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 36 SLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 95
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL LG PE+L ++EL+HCRWAML GI +PE L + W G
Sbjct: 96 DFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--G 153
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
+ Y T+ V+E I + E +R + DP Y
Sbjct: 154 ELEYFTDTT------TLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 207
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 208 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 266
Query: 227 ADPWHNNIGDVIIPR 241
ADP H I P+
Sbjct: 267 ADPGHATIFAAFTPK 281
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 120/236 (50%), Gaps = 51/236 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDPL LG+ P
Sbjct: 67 WFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDL 126
Query: 80 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
L+R++E ELIH RWAMLA G + E W Q+ V
Sbjct: 127 STIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGVTW---QDAGKVEL 183
Query: 125 GQA-TYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDP 182
Q +Y G +P+ T+ ++ IE L I F+E QR+ E DPEK+ YPGG+ FDPLG + DP
Sbjct: 184 DQGPSYFGFSLPF-TITALVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGLAADP 242
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ E K+ EIK+ RLA++A GF VQ +A G GPL+N THL+DP H I D
Sbjct: 243 ERKEVLKLAEIKHARLAMVAAFGFAVQAAA-TGKGPLDNWVTHLSDPLHTTIIDTF 297
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 120/236 (50%), Gaps = 51/236 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P YLDGS GD+GFDPL LG+ P
Sbjct: 67 WFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDL 126
Query: 80 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
L+R++E ELIH RWAMLA G + E W Q+ V
Sbjct: 127 STIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGVTW---QDAGKVEL 183
Query: 125 GQA-TYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDP 182
Q +Y G +P+ T+ ++ IE L I F+E QR+ E DPEK+ YPGG+ FDPLG + DP
Sbjct: 184 DQGPSYFGFSLPF-TITALVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGLAADP 242
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++ E K+ EIK+ RLA++A GF VQ +A G GPL+N THL+DP H I D
Sbjct: 243 ERKEVLKLAEIKHARLAMVAAFGFAVQAAA-TGKGPLDNWVTHLSDPLHTTIIDTF 297
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 131/257 (50%), Gaps = 33/257 (12%)
Query: 4 NTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSA 63
N L + G T S L + ++K A + P+ A ++ W PG PP+LDGS
Sbjct: 20 NGLAAAGART----SFLGAGRTKLREAAARPSFA-VSAAAPDRPIWFPGSVPPPWLDGSL 74
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123
PGDFGFDP LG PE+L ++EL+HCRWAML GI +PE L + W
Sbjct: 75 PGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILSTPSWYTA- 133
Query: 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKK 166
G+ Y T+ +IE + I + E +R + DP
Sbjct: 134 -GEQQYFTDTT------TLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 186
Query: 167 KYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL
Sbjct: 187 GYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNLFA 245
Query: 225 HLADPWHNNIGDVIIPR 241
HLADP H NI P+
Sbjct: 246 HLADPGHANIFQAFTPK 262
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 128/256 (50%), Gaps = 41/256 (16%)
Query: 18 SVLSSSKSKFFTAVSLP-----AAANATSKYAMSAD--------WMPGEPRPPYLDGSAP 64
SV+ ++K+ F L A A T + +SA W PG PP+LDGS P
Sbjct: 25 SVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLP 84
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
GDFGFDPL LG PE L+ +SE++HCRWAML GI +PE L + W
Sbjct: 85 GDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA-- 142
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKK 167
G+ Y T+ ++E + I + E +R + DP
Sbjct: 143 GELEYFTDKT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 196
Query: 168 YPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL H
Sbjct: 197 YPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWF-QAIYTGTGPIDNLFAH 255
Query: 226 LADPWHNNIGDVIIPR 241
LADP H I P+
Sbjct: 256 LADPGHATIFAAFTPK 271
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 49 WMPGEPRPPYLDGSAP----GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILV 104
W+PG P +LD A G+FGFDPL LG+ E L Y+++EL+H R AM AV GIL+
Sbjct: 30 WLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRWYQQAELVHARTAMTAVAGILI 89
Query: 105 PEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDP 163
P L + EW G+ + P+G L L ++ FVE +R + K P
Sbjct: 90 PGLLTKAGALNVPEW--YDAGKVAIESSFAPFGAL---LAVQLFLTGFVEAKRWQDFKKP 144
Query: 164 EKKK-------------------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
+ YPGG FDPLG SKD K ++K+KEIKNGRLA++AF+
Sbjct: 145 GSQAEKGSFLGFETAFAGTGDNGYPGGIFDPLGLSKDADKLADWKLKEIKNGRLAMVAFL 204
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNN 233
GF Q+ A G GP++NLA HLADPWH N
Sbjct: 205 GFTAQKFA-TGKGPIDNLAAHLADPWHVN 232
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 133/247 (53%), Gaps = 38/247 (15%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L+ S K V++ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
GD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE + +W
Sbjct: 72 GDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKW--YDA 129
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 167
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 GKEEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVG 183
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL HL+
Sbjct: 184 YPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHLS 238
Query: 228 DPWHNNI 234
DPWHN I
Sbjct: 239 DPWHNTI 245
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 122/246 (49%), Gaps = 31/246 (12%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S LS K + + AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 36 SFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 95
Query: 75 GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 134
G PE L ++EL+HCRWAML GI +PE L + W G+ Y
Sbjct: 96 GSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GELEYFTDTT 153
Query: 135 PWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPL 176
T+ ++E I + E +R + DP YPGG FDPL
Sbjct: 154 ------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 207
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
G+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 208 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATVF 266
Query: 236 DVIIPR 241
P+
Sbjct: 267 SAFTPK 272
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 122/234 (52%), Gaps = 48/234 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD+GFDP LG+ E L+
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAMLA G L E L W A + V G
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 176
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQK 184
++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K
Sbjct: 177 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+ ++ EIK+ RLA++AF+GF VQ +A G GP ATHL+DP H I D
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPRNYWATHLSDPLHTTIIDTF 287
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 120/228 (52%), Gaps = 31/228 (13%)
Query: 29 TAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
T ++P A T A+ + W PG PP+LDGS PGDFGFDPL LG PE L+
Sbjct: 53 TKAAMPRRAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMV 112
Query: 86 ESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 145
++EL+HCRWAML GI +PE + W G+ Y T+ V+
Sbjct: 113 QAELVHCRWAMLGAAGIFIPELCTKLGILNTPSW--YTAGELEYFTDKT------TLFVV 164
Query: 146 EFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFE 186
E + + + E +R S+ DP YPGG FDPLG+ S P+K +
Sbjct: 165 EMIFLGWAEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIK 224
Query: 187 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E + KEIKNGRLA+LA +G Q+ Y GTGP++NL HLADP H I
Sbjct: 225 ELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNLLAHLADPGHATI 271
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 134/261 (51%), Gaps = 38/261 (14%)
Query: 3 SNTLMSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD--------WMPG 52
++ + S +T+A +V S S K+ FF A +A SK + S W PG
Sbjct: 8 TSRIASIAPSTSATKAVSSGSAVKAAFFGKTLRSAKVSAVSKASFSVRAQATERPLWFPG 67
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
P +LDGS PGDFGFDPL LG PE L+ + ++E++HCRWAML GI +PE L
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP- 163
+ W G+ TY T+ ++E L + + E +R S+ DP
Sbjct: 128 ILNTPSW--YTAGEQTYFADQT------TLFIVELLFMGWAEGRRWADILKPGSVNTDPV 179
Query: 164 --------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
YPGG FDPLG+ + K +E + KEIKNGRLA+LA +G Q+ Y
Sbjct: 180 FPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAWF-QAVY 238
Query: 214 PGTGPLENLATHLADPWHNNI 234
GTGP++NL HLADP H +
Sbjct: 239 TGTGPIDNLFAHLADPGHATV 259
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 128/255 (50%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD------------WMPGEPRPPYLDGSAPG 65
S++ ++K+ F L + +T+ A SA W PG PP+LDGS PG
Sbjct: 25 SIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL L PE+L +++EL+HCRWAML GI +PE L + W G
Sbjct: 85 DFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTA-GE 143
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
Q + T T+ ++E + I + E +R + DP Y
Sbjct: 144 QEYFTDT-------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 255
Query: 227 ADPWHNNIGDVIIPR 241
ADP H I P+
Sbjct: 256 ADPGHATIFAAFSPK 270
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 90 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 149
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G P+P L +V E + + E+ R + D E K
Sbjct: 150 GPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVVAEIVLVGGAEYYRIINGLDLEDKL 208
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 209 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 267
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 268 DPFGNNLLTVI 278
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 131/247 (53%), Gaps = 38/247 (15%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L S K V+ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
GD GFDPL L E PENL + ++EL++ RWAML V G+L+PE + +W A
Sbjct: 72 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAA-- 129
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 167
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 GKEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL H++
Sbjct: 184 YPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHIS 238
Query: 228 DPWHNNI 234
DPWHN I
Sbjct: 239 DPWHNTI 245
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 133/251 (52%), Gaps = 36/251 (14%)
Query: 7 MSCGIATTAFPSVLSSS--KSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLD 60
M+ A T ++ SS+ KS F S A T++ + A+ W+PG P P YL+
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLN 60
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GS PGD GFDPL L E PENL + ++EL++ RWAML V G+L+PE L + A +W
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQW- 119
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK----- 167
G+ATY + T+ VIEF+ +VE +R + +DP K
Sbjct: 120 -YDAGKATYFASS------STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPP 172
Query: 168 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YP + PL F + E K KE+ NGRLA+LAF+GF VQ + GP +NL
Sbjct: 173 HECGYPAASSTPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNV-TQKGPFDNLL 227
Query: 224 THLADPWHNNI 234
HL+DPWHN I
Sbjct: 228 QHLSDPWHNTI 238
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 122/246 (49%), Gaps = 31/246 (12%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S LS K + + AA + T A D W PG PP+LDGS PGDFGFDPL L
Sbjct: 33 SFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 92
Query: 75 GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPV 134
G PE L ++EL+HCRWAML GI +PE L + W G+ Y
Sbjct: 93 GSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GELEYFTDTT 150
Query: 135 PWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPL 176
T+ ++E I + E +R + DP YPGG FDPL
Sbjct: 151 ------TLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
G+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 205 GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATVF 263
Query: 236 DVIIPR 241
P+
Sbjct: 264 SAFTPK 269
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 129/254 (50%), Gaps = 37/254 (14%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGD 66
+ AFP K K + ++ P +T+ +A+ W PG PP+LDGS PGD
Sbjct: 28 TSKAFPG----RKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGD 83
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
FGFDPL L PE+L+ ++EL+HCRWAML GI +PE L + W G Q
Sbjct: 84 FGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA-GEQ 142
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYP 169
+ T T+ ++E + I + E +R + DP YP
Sbjct: 143 EYFTDT-------TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYP 195
Query: 170 GGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
GG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLA
Sbjct: 196 GGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLA 254
Query: 228 DPWHNNIGDVIIPR 241
DP H I P+
Sbjct: 255 DPGHATIFAAFTPK 268
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 125/242 (51%), Gaps = 33/242 (13%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K + ++ P +T+ +A+ W PG PP+LDGS PGDFGFDPL L P
Sbjct: 36 KLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDP 95
Query: 79 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGT 138
E+L+ ++EL+HCRWAML GI +PE L + W G Q + T
Sbjct: 96 ESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA-GEQEYFTDT------ 148
Query: 139 LPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-S 179
T+ ++E + I + E +R + DP YPGG FDPLG+ S
Sbjct: 149 -TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 207
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I
Sbjct: 208 GSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFT 266
Query: 240 PR 241
P+
Sbjct: 267 PK 268
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 116/205 (56%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV GIL+PE L
Sbjct: 95 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPEWL 154
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD------ 162
+++ W G Y P T+ +++ + + +VE +R +
Sbjct: 155 ESLGFIENYNW--FDAGAREYFADPT------TLFIVQLVLMGWVEGRRWADMIKPGCVD 206
Query: 163 -----PEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
P K K YPGG FDPL + + P+ + KEIKNGRLA+LAFVGFC
Sbjct: 207 IEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF- 265
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP+ENL H+ADP H NI
Sbjct: 266 QAVYTGEGPIENLMAHIADPGHCNI 290
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 127/255 (49%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 25 SLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL L PE+L ++EL+HCRWAML GI +PE L + W G
Sbjct: 85 DFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--G 142
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
+ Y T+ ++E I + E +R + DP Y
Sbjct: 143 ELEYFTDTT------TLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 255
Query: 227 ADPWHNNIGDVIIPR 241
ADP H I P+
Sbjct: 256 ADPGHATIFAAFTPK 270
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G P+P + + V E + + E+ R + D E K
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINLILAV-VAEIVLVGGAEYYRIINGLDLEDKL 207
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 208 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 266
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 267 DPFGNNLLTVI 277
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 120/210 (57%), Gaps = 28/210 (13%)
Query: 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL 103
A A W+PG P YL G PGDFGFDPLRLGE P L+ Y+++EL + RWAMLA GIL
Sbjct: 36 AERASWLPGSEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGIL 95
Query: 104 VPEALG-LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----- 157
+ LG LG A AA P +A+ P TL ++E L A+VE +R
Sbjct: 96 FVDLLGHLGAGGPA---AATPWFKASDFTYFAPTSTL---FIVELLLFAWVEVRRYQDMV 149
Query: 158 ---SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S +DP + YPGG FDPLG+SK E K+KEIKN RLA+LA +
Sbjct: 150 KPGSTNQDPIFSQYSLPSGNEPGYPGGIFDPLGYSKG--NMAELKLKEIKNARLAMLAVL 207
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GF VQ G PL++L++HLADPW NN+
Sbjct: 208 GFFVQAKT-TGKTPLDSLSSHLADPWSNNV 236
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 128/250 (51%), Gaps = 34/250 (13%)
Query: 17 PSVLSSSKSKFFTAVSLPAAA-NATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFD 70
PS L K + S+PA + +A A++AD W PG P +LDGS PGDFGFD
Sbjct: 16 PSFLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFD 75
Query: 71 PLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL 130
PL L P++L+ ++EL+HCRWAML GI +PE L + W G+ Y
Sbjct: 76 PLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GEQEYF 133
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA- 172
T+ V+E + I + E +R S+ DP YPGG
Sbjct: 134 TDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLW 187
Query: 173 FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H
Sbjct: 188 FDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGH 246
Query: 232 NNIGDVIIPR 241
I P+
Sbjct: 247 ATIFAAFTPK 256
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 132/261 (50%), Gaps = 47/261 (18%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSL---PAAANATSKYAMSAD---------WMPGEPRPPYL 59
+++ F + ++S+K+ FF+ +L AA +SA W PG P +L
Sbjct: 18 SSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQNERPLWFPGSQAPEWL 77
Query: 60 DGSAPGDFGFDPLRL------GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNW 113
DGS PGDFGFDPL L G PE L+ + ++EL+HCRWAML GI +PEAL
Sbjct: 78 DGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAGIFIPEALTKMGI 137
Query: 114 VQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP-- 163
+ W G A Y T+ VIE + A+ E +R + DP
Sbjct: 138 LNTPSWTV--AGDADYFTDKT------TLFVIELILFAWAEGRRWADIVNPGCVNVDPVF 189
Query: 164 -------EKKKYPGGA-FDPLGF--SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
YPGG FDPLG+ + D K ++ + +EIKNGRLA+LA +G VQ + Y
Sbjct: 190 PNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAMLAVLGAIVQAN-Y 248
Query: 214 PGTGPLENLATHLADPWHNNI 234
TGP++NL HL DP HN I
Sbjct: 249 THTGPIDNLVAHLVDPGHNTI 269
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 114/212 (53%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE+L ++EL+HCRWAML GI +PE L
Sbjct: 61 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 120
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G Q + T T+ +IE + I + E +R +
Sbjct: 121 TKIGILNTPSWYTA-GEQQYFTDT-------TTLFIIELILIGWAEGRRWADIIKPGCVN 172
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ + P+K +E + KEIKNGRLA+LA +G
Sbjct: 173 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWF- 231
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ Y GTGP++NL HLADP H I P+
Sbjct: 232 QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 263
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G P+P + + V E + + E+ R + D E K
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINFILAV-VAEIVLVGGAEYYRIINGLDLEDKL 207
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 208 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 266
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 267 DPFGNNLLTVI 277
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 127/255 (49%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S+L S+K+ F + L P A +++ A+ W PG PP+LDGS PG
Sbjct: 36 SLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPG 95
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL L PE+L ++EL+HCRWAML GI +PE L + W G
Sbjct: 96 DFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--G 153
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
+ Y T+ ++E I + E +R + DP Y
Sbjct: 154 ELEYFTDTT------TLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 207
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 208 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 266
Query: 227 ADPWHNNIGDVIIPR 241
ADP H I P+
Sbjct: 267 ADPGHATIFAAFTPK 281
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 30/210 (14%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P YL+GS PGD G DPL L E PE+L+ Y ++EL++ RWAML V G
Sbjct: 48 KVEAKGEWLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAG 107
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+ +PE L + +W G+ Y + T+ VIEF+ +VE +R
Sbjct: 108 MXIPEVLTSIGLINVPKW--YDAGKVEYFASSX------TLFVIEFILFHYVELRRWQDI 159
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
S+ +DP K YPGG F+PL FS E K KE+ NGRLA+LAF+
Sbjct: 160 KYPGSVNQDPIXKSYSLPPNEVGYPGGIFNPLNFSPS----MEAKEKELANGRLAMLAFL 215
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GF VQ + G GP +NL HL+DPWHN I
Sbjct: 216 GFVVQHNV-TGKGPFDNLLQHLSDPWHNTI 244
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 120/218 (55%), Gaps = 28/218 (12%)
Query: 37 ANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAM 96
+N + + +W+PG P YL+ PG +GFDPL+LGE P +L+ Y +SEL+H R+AM
Sbjct: 26 SNGSRVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAM 84
Query: 97 LAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 156
AV GIL+PE L V W G+ +P+P+ TL + +E + FVE +
Sbjct: 85 AAVAGILIPEVLKAFGAVNLPVW--YEAGKYAQESSPIPFNTL---IALEIFAFNFVEIK 139
Query: 157 RSME--------------------KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNG 196
R + K + YPGG FDPLG SK P +E K++EIKNG
Sbjct: 140 RWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGP-GYEAMKLREIKNG 198
Query: 197 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
RLA+LAF+GF Q A G GP+ENL HL++P NN
Sbjct: 199 RLAMLAFIGFASQYLA-TGKGPIENLLDHLSNPLANNF 235
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 129/248 (52%), Gaps = 43/248 (17%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSA----DWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
+ +S+ S+ + A A+ + A ++ PG P +LDG+ PGD+GFDPL LGE
Sbjct: 14 TQRSRTVRPRSVASKARASVRVGAVAAARPNFFPGTTPPKHLDGTMPGDYGFDPLGLGED 73
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYL 130
LE YK++EL H RWAML V G+ PE + + NW +A W Y+
Sbjct: 74 KVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEGAMPNWAEAPLWDG-------YM 126
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP----------EKKKYPGGA 172
+P T+ V++ + + E +R +M +DP YP G
Sbjct: 127 ASP------NTLFVVQMFMMNWAEVRRWQDMKNPGTMNEDPLTGANKGDTNTDVGYPKGL 180
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
FDP+G +KDP+K + KVKEI NGRLA++A +G C+ Q+ G GP+ NL HLADP HN
Sbjct: 181 FDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMG-CIIQNEATGVGPIANLKAHLADPAHN 239
Query: 233 NIGDVIIP 240
I +P
Sbjct: 240 TIFTNFVP 247
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 113/206 (54%), Gaps = 29/206 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+HCRWAML GI +PEAL
Sbjct: 68 WFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEAL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W V G Q + T+ VIE + A+ E +R +
Sbjct: 128 TKAGILNTPSW-TVAGDQQYFTDA-------TTLFVIEIILFAWAEGRRWADIINPGCVN 179
Query: 161 KDP---------EKKKYPGGA-FDPLGFSK--DPQKFEEYKVKEIKNGRLALLAFVGFCV 208
DP YPGG FDPLG+ + D K ++ + +EIKNGRLA+LA +G V
Sbjct: 180 VDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAVLGAVV 239
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q + Y TGP++NL HLADP HN I
Sbjct: 240 QAN-YTHTGPIDNLLAHLADPGHNTI 264
>gi|168067076|ref|XP_001785452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168067086|ref|XP_001785457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662935|gb|EDQ49732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662940|gb|EDQ49737.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 121/235 (51%), Gaps = 49/235 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS PGD+GFDPL LG+ PE
Sbjct: 64 WFPGARAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKK 123
Query: 80 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
L+R++E ELIH RWAMLA+ G L EA W A + V G
Sbjct: 124 EEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVELVDG 183
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQ 183
A+Y G P+P+ ++ +++ IE + F+E QR+ E DPEK+ YPGG FDPL F+ +
Sbjct: 184 --ASYFGLPLPF-SITSLVYIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNFADTEE 240
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
K E K+ EIK+ RLA++A Q+A G GPL+N ATHLADP H I D
Sbjct: 241 KKETLKLAEIKHARLAMVA-ALGFAAQAAATGKGPLDNWATHLADPLHTTIFDTF 294
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 119/215 (55%), Gaps = 39/215 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG PPYLDG+ GDFGFDPL LGE PE+L+ Y ++EL+H R+AM V GIL + L
Sbjct: 67 WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLL 126
Query: 109 ---GLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-K 161
GL N W +A T + T+ +++ L + FVE +R M+ K
Sbjct: 127 RTTGLSNLPVWYEAG-------------ATKFQFANTTTLFIVQMLLMGFVETKRYMDFK 173
Query: 162 DPEKK-----------------KYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 203
+P + YPGG +PLG +KD + E+K+KEIKNGRLA++A
Sbjct: 174 NPGSQGEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAI 233
Query: 204 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
+G VQ S GPLENL HL+DPWH I ++
Sbjct: 234 LGIFVQASV-THVGPLENLVEHLSDPWHTTIIQIL 267
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 126/255 (49%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S + ++K+ F + L P A+ + AD W PG PP+LDGS PG
Sbjct: 25 STVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVADPDRPLWFPGSTPPPWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL LG PE L ++EL+HCRWAML GI +PE L + W G
Sbjct: 85 DFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW--YDAG 142
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
+ Y T+ +IE + I + E +R + DP Y
Sbjct: 143 KLEYFTDTT------TLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTGTDVGY 196
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 255
Query: 227 ADPWHNNIGDVIIPR 241
ADP H + P+
Sbjct: 256 ADPGHATVFAAFSPK 270
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 124/242 (51%), Gaps = 33/242 (13%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K ++ + P+ +TS A+ W PG PP+LDGS PGDFGFDPL LG P
Sbjct: 37 KLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 79 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGT 138
E+L ++EL+H RWAML GI +PE L + W G Q + T
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA-GEQEYFTDT------ 149
Query: 139 LPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-S 179
T+ ++E + I + E +R + DP YPGG FDPLG+ S
Sbjct: 150 -TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 208
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I
Sbjct: 209 ASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFT 267
Query: 240 PR 241
P+
Sbjct: 268 PK 269
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 40/227 (17%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A A A A W+PG P YLDG+ PGD+GFDPL LGE PE+L+ Y ++EL+HCR
Sbjct: 38 PRARFAVRAIAERATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCR 97
Query: 94 WAMLAVPGILVPEAL---GLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
+AM V GIL + + G+GN W +A T + + ++
Sbjct: 98 FAMAGVAGILGTDLIRVSGIGNLPVWFEAG-------------ATKFDFANTTALFFVQL 144
Query: 148 LSIAFVEHQRSME-------------------KDPEKKKYPGG-AFDPLGFSKDPQKFEE 187
L + FVE +R M+ + + YPGG F+P+G +KD + E
Sbjct: 145 LLMGFVETKRYMDFVSPGSQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANE 204
Query: 188 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
K+KEIKNGRLA++A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 205 VKLKEIKNGRLAMVAMLGFIVQASV-THAGPIDNLLTHLSDPFNKNI 250
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 133/261 (50%), Gaps = 42/261 (16%)
Query: 7 MSCGIATTAFPSVLSSSKS------KFFTAVSLPAAANATSKYAMSAD--------WMPG 52
M+ IA+TAF S+ + S K T + NAT + + W PG
Sbjct: 1 MALSIASTAFSSLPTREVSSKHFPRKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFPG 60
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
P +LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV GIL+PE L
Sbjct: 61 SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLG 120
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-----------K 161
+++ W G + P T+ V++ + +VE +R +
Sbjct: 121 FIENFSW--YDAGAQEFFADPT------TLFVVQLALMGWVEGRRWADLINPGCVDIQLT 172
Query: 162 DPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
P K K YPGG FDP + + P+ + KEIKNGRLA+LAFVGFC Q+ Y
Sbjct: 173 FPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF-QAIY 231
Query: 214 PGTGPLENLATHLADPWHNNI 234
G GP+ENL H+ADP H N+
Sbjct: 232 TGEGPIENLMAHIADPGHCNV 252
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLG 75
L+ +++ F A AA+ + +A W PG PP+LDGS PGDFGFDP LG
Sbjct: 20 LAGARTSFLGAAGKAAASRTSFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLG 79
Query: 76 EVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVP 135
PE+L ++EL+HCRWAML GI +PE L + W G Q + T
Sbjct: 80 SDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTA-GEQEYFTDT--- 135
Query: 136 WGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLG 177
T+ ++E + I + E +R + DP YPGG FDPLG
Sbjct: 136 ----TTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 191
Query: 178 F-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236
+ + P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL HLADP H I
Sbjct: 192 YGTGSPEKLKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNLFAHLADPGHATIFR 250
Query: 237 VIIPR 241
P+
Sbjct: 251 AFAPK 255
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 35/212 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 AL---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 160
L G+ N E AV + + T++V++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 161 -----------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
+ + YPGG +PLG +KD Q ++K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+GF VQ S TGP++NL HL++PWH I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 120/208 (57%), Gaps = 34/208 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVP--- 105
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV GIL+P
Sbjct: 63 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 122
Query: 106 EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-------- 157
E+LGL +Q W G Y P T+LV + + +VE +R
Sbjct: 123 ESLGL---IQNFSW--YDAGSREYFADPT------TLLVAQLALMGWVEGRRWADLVNPG 171
Query: 158 SMEKD---PEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGF 206
S++ D P KKK YPGG FDP+ + + P+ + KEIKNGRLA+LAFVG
Sbjct: 172 SVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL 231
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GPLENLA H+ADP H NI
Sbjct: 232 WF-QAIYTGQGPLENLAAHVADPGHCNI 258
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 120/208 (57%), Gaps = 34/208 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVP--- 105
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV GIL+P
Sbjct: 63 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 122
Query: 106 EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-------- 157
E+LGL +Q W G Y P T+LV + + +VE +R
Sbjct: 123 ESLGL---IQNFSW--YDAGSREYFADPT------TLLVAQLALMGWVEGRRWADLVNPG 171
Query: 158 SMEKD---PEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGF 206
S++ D P KKK YPGG FDP+ + + P+ + KEIKNGRLA+LAFVG
Sbjct: 172 SVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL 231
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GPLENLA H+ADP H NI
Sbjct: 232 WF-QAIYTGQGPLENLAAHVADPGHCNI 258
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 111/199 (55%), Gaps = 15/199 (7%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P YLDGS GD GFDPL L E PE+L + ++++++ RWAML V G+L+PE L
Sbjct: 36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVL 95
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK- 167
+ A EW +PG + + + + +E +++ S+ +DP K
Sbjct: 96 TKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSY 155
Query: 168 --------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
YPG F+PL F+ E K KE+ NGRLA+LAF+GF VQ + + G GP
Sbjct: 156 SLPPHECGYPGRVFNPLNFAP-----LENKEKELANGRLAMLAFLGFLVQHNVH-GKGPF 209
Query: 220 ENLATHLADPWHNNIGDVI 238
ENL HLADPWHN I I
Sbjct: 210 ENLQQHLADPWHNTIIQTI 228
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 112/212 (52%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L+ +SE++HCRWAML GI +PE L
Sbjct: 70 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFL 129
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G+ Y T+ ++E + I + E +R +
Sbjct: 130 TKIGILNTPSWYTA--GELEYFTDKT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 181
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G
Sbjct: 182 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWF- 240
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ Y GTGP++NL HLADP H I P+
Sbjct: 241 QAIYTGTGPIDNLFAHLADPGHATIFAAFTPK 272
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 112/212 (52%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML GI +PE L
Sbjct: 56 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELL 115
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G+ TY T+ ++E + I + E +R +
Sbjct: 116 TKIGILNTPSWYTA--GEQTYFADTT------TLFIVELILIGWAEGRRWADIIKPGCVN 167
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G
Sbjct: 168 TDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF- 226
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ Y GTGP++NL HLADP H I P
Sbjct: 227 QAEYTGTGPIDNLFAHLADPGHATIFRAFTPN 258
>gi|125600703|gb|EAZ40279.1| hypothetical protein OsJ_24721 [Oryza sativa Japonica Group]
Length = 267
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 106/159 (66%), Gaps = 5/159 (3%)
Query: 81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 140
L+R++E ELIH RWAMLA G L E L W A + V G ++YLG P+P+ ++
Sbjct: 109 LQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SIS 165
Query: 141 TILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLA 199
T++ IE L I ++E QR+ E DPEK+ YPGG+ FDPLG + DP+K E ++ EIK+ RLA
Sbjct: 166 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLA 225
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 226 MVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFDTF 263
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG----LGNW 113
PG FDPL L PE ER + +E+ H R AM+A G V A L NW
Sbjct: 194 PGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNW 247
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 35/212 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 39 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 98
Query: 107 AL---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 160
L G+ N E AV + + T++V++FL + F E +R M+
Sbjct: 99 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 148
Query: 161 -----------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
+ + YPGG +PLG +KD Q ++K+KEIKNGRLA++A
Sbjct: 149 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 208
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+GF VQ S TGP++NL HL++PWH I
Sbjct: 209 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 239
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 113/212 (53%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML GI +PE L
Sbjct: 51 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELL 110
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G Q + T T+ V+E + I + E +R S+
Sbjct: 111 TKIGILNTPSWYTA-GEQEYFTDT-------TTLFVVELILIGWAEGRRWADIIKPGSVN 162
Query: 161 KDP---------EKKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ P+K +E + KEIKNGRLA+LA +G
Sbjct: 163 TDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWF- 221
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ Y GTGP++NL HLADP H I P+
Sbjct: 222 QAEYTGTGPIDNLFAHLADPGHATIFRAFAPK 253
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 129/252 (51%), Gaps = 40/252 (15%)
Query: 14 TAFPSVLSSSKSKFFT--AVSL-------PAAANATSKYAMSAD---WMPGEPRPPYLDG 61
T F + + ++K+ F AVSL P A A+ + W PG PP+LDG
Sbjct: 29 TVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDG 88
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S P DFGFDPL LG PE L+ +SEL+HCRWAML GI +PE L + W
Sbjct: 89 SLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 148
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------E 164
G+ Y T+ V+E + + + E +R S+ DP
Sbjct: 149 A--GEQEYFTDKT------TLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGT 200
Query: 165 KKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL
Sbjct: 201 DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNL 259
Query: 223 ATHLADPWHNNI 234
HLADP H +
Sbjct: 260 LAHLADPGHATV 271
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 129/252 (51%), Gaps = 40/252 (15%)
Query: 14 TAFPSVLSSSKSKFFT--AVSL-------PAAANATSKYAMSAD---WMPGEPRPPYLDG 61
T F + + ++K+ F AVSL P A A+ + W PG PP+LDG
Sbjct: 29 TVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDG 88
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S P DFGFDPL LG PE L+ +SEL+HCRWAML GI +PE L + W
Sbjct: 89 SLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 148
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------E 164
G+ Y T+ V+E + + + E +R S+ DP
Sbjct: 149 A--GELEYFTDKT------TLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGT 200
Query: 165 KKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q+ Y GTGP++NL
Sbjct: 201 DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF-QAEYTGTGPIDNL 259
Query: 223 ATHLADPWHNNI 234
HLADP H +
Sbjct: 260 LAHLADPGHATV 271
>gi|168040609|ref|XP_001772786.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040679|ref|XP_001772821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675863|gb|EDQ62353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675898|gb|EDQ62388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 120/235 (51%), Gaps = 49/235 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDGS PGD+GFDPL LG+ PE
Sbjct: 64 WFPGAQAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKK 123
Query: 80 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
L+R++E ELIH RWAMLA+ G L EA W A + V G
Sbjct: 124 EEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVELVDG 183
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQ 183
A+Y G P+P+ ++ +++ IE + F+E QR+ E DPEK+ YPGG FDPL F+
Sbjct: 184 --ASYFGLPLPF-SITSLVYIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNFADTED 240
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
K E K+ EIK+ RLA++A Q+A G GPL+N ATHLADP H I D
Sbjct: 241 KKETLKLAEIKHARLAMVA-ALGFAAQAAATGKGPLDNWATHLADPLHTTIFDTF 294
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 122/227 (53%), Gaps = 40/227 (17%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A A A W+PG PP+LDG+ PGDFGFDPL LGE P NL+ Y ++EL+HCR
Sbjct: 42 PRARIAVRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCR 101
Query: 94 WAMLAVPGILVPEAL---GLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
+AM V GIL + + G+ N W +A T + + ++
Sbjct: 102 FAMAGVAGILATDLIRVSGINNLPVWFEAG-------------ATKFDFANTTALFFVQL 148
Query: 148 LSIAFVEHQRSME-KDPEKKK------------------YPGG-AFDPLGFSKDPQKFEE 187
L + F E +R M+ +P + YPGG F+PLG +KD + +E
Sbjct: 149 LLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADE 208
Query: 188 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
K+KEIKNGRLA++A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 209 AKLKEIKNGRLAMVAMLGFIVQASVT-HVGPIDNLLTHLSDPFNKNI 254
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 116/207 (56%), Gaps = 32/207 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
WMPG P YLDG+ PGDFGFDPL LG P L+ Y ++EL+H R+AMLAV GILVPE L
Sbjct: 61 WMPGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELL 120
Query: 109 -GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------S 158
+G +W A A G+ Y ++ ++ L A+ E +R S
Sbjct: 121 TNIGFSWPGAGV-AWYDAGKFQYFAPA------SSLFGVQMLLFAWAELRRYQDFVKPGS 173
Query: 159 MEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+DP + YPGG FDP G+SK K K KEIKNGRLA+LAF GF
Sbjct: 174 ANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSKGDMK--SLKTKEIKNGRLAMLAFAGFAA 231
Query: 209 QQSAY-PGTGPLENLATHLADPWHNNI 234
Q AY GT PL+NLATHLADPW +
Sbjct: 232 Q--AYTTGTTPLKNLATHLADPWATTV 256
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 28/208 (13%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ PGDFGFDPL LGE PE L+ Y ++EL+HCR+AM V GIL +
Sbjct: 63 ATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTD 122
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDP-- 163
L + W + + T + ++ + F E +R M+ K+P
Sbjct: 123 LLRVSGNSDLPVWFEAGAAKFDFANTTA-------LFFVQLFLMGFAETKRYMDFKNPGS 175
Query: 164 ----------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
++ YPGG F+PLG +KD + + K+KEIKNGRLA++A +GF
Sbjct: 176 QAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGF 235
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
VQ S GP++NL THL+DP++ NI
Sbjct: 236 MVQASV-THAGPIDNLLTHLSDPFNKNI 262
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 AL---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 160
L G+ N E AV + T++V++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFACTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 161 -----------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
+ + YPGG +PLG +KD Q ++K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+GF VQ S TGP++NL HL++PWH I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G +VPEA N
Sbjct: 94 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANC 153
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G +P L ++ E + + E+ R + D E K
Sbjct: 154 GPEAVWFKTGALLLDGGTLNYFGNSIPI-NLVVAVIAEVVLLGGAEYYRIINGLDLEDKL 212
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 213 HPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 271
Query: 228 DPWHNNIGDVI 238
DP+ NN+ V+
Sbjct: 272 DPFGNNLLTVL 282
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 28/208 (13%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ PGDFGFDPL LGE PE L+ Y ++EL+HCR+AM V GIL +
Sbjct: 63 ATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTD 122
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDP-- 163
L + W + + T + ++ + F E +R M+ K+P
Sbjct: 123 LLRVSGNSDLPVWFEAGAAKFDFANTTA-------LFFVQLFLMGFAETKRYMDFKNPGS 175
Query: 164 ----------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
++ YPGG F+PLG +KD + + K+KEIKNGRLA++A +GF
Sbjct: 176 QAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGF 235
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
VQ S GP++NL THL+DP++ NI
Sbjct: 236 MVQASVT-HAGPIDNLLTHLSDPFNKNI 262
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 114/212 (53%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML GI +PE L
Sbjct: 58 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 117
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G Q + T T+ +IE + I + E +R S+
Sbjct: 118 TKIGVLNTPFWYTA-GEQQYFTDT-------TTLFIIELILIGWAEGRRWADIIKPGSVN 169
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G
Sbjct: 170 TDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF- 228
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ Y GTGP++NL HLADP H I P+
Sbjct: 229 QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 260
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 122/227 (53%), Gaps = 40/227 (17%)
Query: 34 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
P A A A W+PG PP+LDG+ PGDFGFDPL LGE P NL+ Y ++EL+HCR
Sbjct: 42 PRARIAVRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCR 101
Query: 94 WAMLAVPGILVPEAL---GLGN---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
+AM V GIL + + G+ N W +A T + + ++
Sbjct: 102 FAMAGVAGILATDFIRVSGINNLPVWFEAG-------------ATKFDFANTTALFFVQL 148
Query: 148 LSIAFVEHQRSME-KDPEKKK------------------YPGG-AFDPLGFSKDPQKFEE 187
L + F E +R M+ +P + YPGG F+PLG +KD + +E
Sbjct: 149 LLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADE 208
Query: 188 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
K+KEIKNGRLA++A +GF VQ S GP++NL THL+DP++ NI
Sbjct: 209 AKLKEIKNGRLAMVAMLGFIVQASVTH-VGPIDNLLTHLSDPFNKNI 254
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 114/212 (53%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDP LG PE+L ++EL+HCRWAML GI +PE L
Sbjct: 68 WFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G Q + T T+ +IE + I + E +R S+
Sbjct: 128 TKIGVLNTPFWYTA-GEQQYFTDT-------TTLFIIELILIGWAEGRRWADIIKPGSVN 179
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G
Sbjct: 180 TDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF- 238
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ Y GTGP++NL HLADP H I P+
Sbjct: 239 QAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 270
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 112/190 (58%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGNWV 114
P YL+G PGD+G+DP LG PEN ++Y+ ELIH RWAML G ++PEA G +
Sbjct: 104 PEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 163
Query: 115 QAQE-W-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
+ W + GG +Y G +P + ++ L ++ + + + K +
Sbjct: 164 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKLH 223
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG FDPLG +KDP +F KVKEIKNGRLA+ + +GF + Q+ G GP+ENLA HL+D
Sbjct: 224 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFL-QAYVTGEGPVENLAAHLSD 282
Query: 229 PWHNNIGDVI 238
P+ NNI V+
Sbjct: 283 PFGNNILTVL 292
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 120/217 (55%), Gaps = 28/217 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YL+G GD+G+DPL LG PE L+ Y+++EL+H RWAMLAV GIL E +
Sbjct: 47 WAPGVEAPSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIV 106
Query: 109 GLGNWV-QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 159
G + A +PG G P L +L EFL +VE +R S+
Sbjct: 107 KPGVFFYNAGLPENLPG---INFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIKKKDSV 163
Query: 160 EKDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
+DP K YPGG FDP GFSK F+E + KEIKNGRLA++AFVGF +Q
Sbjct: 164 NQDPIFKGNKVPNPELGYPGGIFDPFGFSKG--NFKEVQTKEIKNGRLAMVAFVGFIIQA 221
Query: 211 SAYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 243
A G GPL NL HLA+P+ N NIG IP +
Sbjct: 222 QAT-GQGPLANLGAHLANPFGNNITKNIGTCAIPSSV 257
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 116/214 (54%), Gaps = 24/214 (11%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLER 83
KS+ VS P+ A + W PG P +LDGS GD+GFDPLRLG +NL+
Sbjct: 6 KSRVSAGVSRPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDNLKW 65
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGN-WVQAQEWAAVPGGQATYLGTPVPWGTLPTI 142
++E+EL + RWAM AV GIL +A+GL W E A+ T+
Sbjct: 66 FREAELTNGRWAMAAVVGILFTDAVGLPKFWTAGAEKYALDN---------------QTL 110
Query: 143 LVIEFLSIAFVEHQRS--MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLAL 200
+IE A +E +R +K E FDP+G K EE K+KE+KNGRLA+
Sbjct: 111 ALIEVAVFAVLEGKRYEIYKKTGETGFLSFAPFDPMGM-----KSEEMKLKELKNGRLAM 165
Query: 201 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
LAF+GFC Q + Y G GP+E L HLADP HNNI
Sbjct: 166 LAFLGFCSQAAVY-GKGPIETLQLHLADPGHNNI 198
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 120/212 (56%), Gaps = 35/212 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 AL---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--- 160
L G+ N E AV + + T++V++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 161 -----------------KDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
+ + YPGG +PLG +KD + ++K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMA 216
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+GF VQ S TGP++NL HL++PWH I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHXTI 247
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 28/208 (13%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ PGDFGFDPL LGE PE L+ Y ++EL+HCR+AM V GIL +
Sbjct: 109 ATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTD 168
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDP-- 163
L + W + + T + ++ + F E +R M+ K+P
Sbjct: 169 LLRVSGNSDLPVWFEAGAAKFDFANTTA-------LFFVQLFLMGFAETKRYMDFKNPGS 221
Query: 164 ----------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
++ YPGG F+PLG +KD + + K+KEIKNGRLA++A +GF
Sbjct: 222 QAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGF 281
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
VQ S GP++NL THL+DP++ NI
Sbjct: 282 MVQASVT-HAGPIDNLLTHLSDPFNKNI 308
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 132/242 (54%), Gaps = 39/242 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + A+ W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--AVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPE-----ALGLGNWVQAQEWAAVPGGQATYLGT 132
P+ L+ Y ++EL+H R+AML GI++ LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 173
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 174 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
DP+G S+ D K++EYK KE+KNGRLA++A +GF Q +A G GPL+NLA HLADP H
Sbjct: 171 DPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNLADHLADPNHV 229
Query: 233 NI 234
N
Sbjct: 230 NF 231
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 132/242 (54%), Gaps = 39/242 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + A+ W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--AVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPE-----ALGLGNWVQAQEWAAVPGGQATYLGT 132
P+ L+ Y ++EL+H R+AML GI++ LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 173
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 174 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
DP+G S+ D K++EYK KE+KNGRLA++A +GF Q +A G GPL+NLA HLADP H
Sbjct: 171 DPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNLADHLADPNHV 229
Query: 233 NI 234
N
Sbjct: 230 NF 231
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 137/268 (51%), Gaps = 42/268 (15%)
Query: 7 MSCGIATTAFPSVLSSSKS-KFF---TAVSLPAAANATSKYAMSAD----------WMPG 52
M+ I++TA + ++ K K F TA LP + +K +S W PG
Sbjct: 1 MALSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPG 60
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
P +LDGS PGDFGFDP+ LG PE L+ ++EL+H RWAML V GIL+PE L
Sbjct: 61 SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEKMG 120
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPE 164
+V+ W G Y P T+ +++ + +VE +R S++ +P+
Sbjct: 121 YVENYSWYEA--GTQEYFADPT------TLFIVQLALMGWVEGRRWADLVNPGSVDIEPK 172
Query: 165 KKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
YPGG FDP+ + + P+ + KEIKNGRLA+LAFVGF Q+ Y
Sbjct: 173 LPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF-QAIY 231
Query: 214 PGTGPLENLATHLADPWHNNIGDVIIPR 241
G GP+ENL HLADP H NI R
Sbjct: 232 TGQGPIENLMAHLADPGHCNIFSAFTSR 259
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 40/255 (15%)
Query: 18 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPG 65
S++ ++K+ F L P + + + A++AD W PG P +LDGS PG
Sbjct: 25 SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPG 84
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
DFGFDPL LG PE+L+ ++EL+H RWAML GI +PE L + W G
Sbjct: 85 DFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTA-GE 143
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKY 168
Q + T T+ VIE + I + E +R + DP Y
Sbjct: 144 QEYFTDT-------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196
Query: 169 PGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
PGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HL
Sbjct: 197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHL 255
Query: 227 ADPWHNNIGDVIIPR 241
ADP H I P+
Sbjct: 256 ADPGHATIFAAFSPK 270
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 126/250 (50%), Gaps = 34/250 (13%)
Query: 17 PSVLSSSKSKFFTAVSLPAAANATSKYAMSAD------WMPGEPRPPYLDGSAPGDFGFD 70
PS L+ K + +S+PA + + + A W PG P +LDGS PGDFGFD
Sbjct: 16 PSFLAGKKLRLNKKLSVPAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFD 75
Query: 71 PLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL 130
PL L PE+L+ ++E++HCRWAML GI +PE L + W G+ Y
Sbjct: 76 PLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GEQEYF 133
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA- 172
T+ V+E + I + E +R S+ DP YPGG
Sbjct: 134 TDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLW 187
Query: 173 FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H
Sbjct: 188 FDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGH 246
Query: 232 NNIGDVIIPR 241
I P+
Sbjct: 247 ATIFAAFTPK 256
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 91 PEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G P+P L ++ E + + E+ R + + E K
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVIAEIVLVGGAEYYRIINGLNFEDKL 209
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 210 HPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 268
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 269 DPFGNNLLTVI 279
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 112/212 (52%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL L PE+L +++EL+HCRWAML GI +PE L
Sbjct: 69 WFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFL 128
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G+ Y T+ ++E + I + E +R +
Sbjct: 129 TKIGILNTPSWYTA--GELEYFTDTT------TLFIVELIFIGWAEGRRWADILKPGCVN 180
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ S P+K +E + KEIKNGRLA+LA +G Q
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Y GTGP++NL HLADP H + P+
Sbjct: 241 H-IYTGTGPIDNLFAHLADPGHATVFAAFTPK 271
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +L G PGD+GFD LG P Y E++HCRWAMLA G++VPE L L V
Sbjct: 107 PEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGIVH 166
Query: 116 AQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
E +A + G YLG P + G + I + + L + E+ R +
Sbjct: 167 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQVLLMVGPEYARYCGIEAL 226
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG SKDP FEE+KVKEIKNGRLA++A++GF + Q+A
Sbjct: 227 EPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYI-QAAVT 285
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NLA HL+DP HNNI
Sbjct: 286 GKGPVQNLAEHLSDPLHNNI 305
>gi|295798043|emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]
Length = 179
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 104/159 (65%), Gaps = 5/159 (3%)
Query: 81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 140
L+R++E ELIH RW MLA G L E L W A + V G A+YLG P+P+ ++
Sbjct: 21 LQRFRECELIHGRWGMLATLGALTVEWLTGVTWQDAGKVELVEG--ASYLGQPLPF-SIT 77
Query: 141 TILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLA 199
T++ IE L I ++E QR+ E DPEK+ YPGG+F DPLG + DP+K ++ EIK+ RLA
Sbjct: 78 TLIWIEVLVIGYIEFQRNAEVDPEKRXYPGGSFFDPLGLAADPEKKATLQLAEIKHARLA 137
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
++AF+GF VQ +A G GPL N ATHL+DP H I D
Sbjct: 138 MVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTILDTF 175
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 28/206 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG PP+LDG+ PGDFGFDPL LGE P +L+ Y ++EL+HCR+AM V GIL + L
Sbjct: 62 WLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLL 121
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDP---- 163
+ W + + T + ++ L + F E +R M+ K+P
Sbjct: 122 RVSGNSDLPVWFEAGAAKFEFANTTA-------LFFVQLLLMGFAETKRYMDFKNPGSQA 174
Query: 164 --------------EKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
++ YPGG F+PLG +KD + E K+KEIKNGRLA++A +GF V
Sbjct: 175 EEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMV 234
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q S GP++NL THL+DP++ NI
Sbjct: 235 QASVT-HAGPIDNLLTHLSDPFNKNI 259
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 93 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 152
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G P+P L ++ E + + E+ R + + E K
Sbjct: 153 GPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVIAEIVLVGGAEYYRIINGLNFEDKL 211
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 212 HPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 270
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 271 DPFGNNLLTVI 281
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 115/219 (52%), Gaps = 32/219 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-GLGNWV 114
P YL+G+ GD+G+DPL LG+ +E+Y+ ELIH RWAMLA GI++PE L G +
Sbjct: 113 PTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGAAI 172
Query: 115 QAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRSMEKDP 163
+ W + GG Y VPWG + ++VIE + VE R + P
Sbjct: 173 KGGTWFETGAEMLNGGTLNYF--AVPWGIINNPLPLFLVVVIEVALLGAVERYRQSGEGP 230
Query: 164 E-----------------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
YPGG FDPLG + DP+ F E KVKEIKNGRLAL++ +GF
Sbjct: 231 PGYSPGVGKFDSSIFSGLDNLYPGGPFDPLGLADDPETFAELKVKEIKNGRLALISVLGF 290
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 245
V QS G GP N + H+ADP+ N+ +I VP
Sbjct: 291 AV-QSYVTGEGPYANWSKHVADPFGYNLLTIIGAEDRVP 328
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 113/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV GIL+PE L
Sbjct: 27 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECL 86
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
+++ W G + P T+ V++ + +VE +R +
Sbjct: 87 ERLGFIENFSW--YDAGAQEFFADPT------TLFVVQLALMGWVEGRRWADLINPGCVD 138
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
P K K YPGG FDP + + P+ + KEIKNGRLA+LAFVGFC
Sbjct: 139 IQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF- 197
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP+ENL H+ADP H N+
Sbjct: 198 QAIYTGEGPIENLMAHIADPGHCNV 222
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 112/206 (54%), Gaps = 30/206 (14%)
Query: 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVP 105
W+PG P YLDGS PGD GF PL L E PENL+ + ++EL++ RWAML V G+L+P
Sbjct: 2 KGQWLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLP 61
Query: 106 EALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-------- 157
E + +W G+ Y + T+ VIEF+ +VE +R
Sbjct: 62 EVFTNIGILNVPKW--YDAGKEEYFASS------STLFVIEFILFHYVEIRRWQDIKNPG 113
Query: 158 SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
S+ + P K YPGG F+PL F+ E K KEI NGRLA+LAF+GF V
Sbjct: 114 SVNQXPIFKNYSLPPNEVGYPGGIFNPLNFAPT----AEAKEKEIANGRLAMLAFLGFIV 169
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q + G GP +NL HL+DPWHN I
Sbjct: 170 QHNVV-GKGPFDNLLQHLSDPWHNTI 194
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 114/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE+L+ + ++ELIH RWAMLA GIL+PE L
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWL 118
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
++ W G Y P T+ V++ + + ++E +R +
Sbjct: 119 ERLGFIDNFNW--FDAGTREYFADPT------TLFVVQLILMGWIEGRRWADMIKPGCVD 170
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K P K K YPGG FDP + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 171 IDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWF- 229
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL H+ADP H NI
Sbjct: 230 QAIYTGEGPIDNLMAHIADPGHCNI 254
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 34/220 (15%)
Query: 37 ANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAM 96
A+A S++ + W+PG PP+LDG+ GDFGFDPL LGE P++L+ Y ++EL+HCR+AM
Sbjct: 43 AHAQSEHRQT--WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAM 100
Query: 97 LAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG--TLPTILVIEFLSIAFVE 154
L V G+L+ + L + + W Y V +G T+ +++ L + FVE
Sbjct: 101 LGVSGVLLTDLLRVTGISELPVW---------YNAGAVEYGFANKRTLFIVQLLLMGFVE 151
Query: 155 HQRSME-KDPEKKK------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIK 194
+R M+ K P + YPGG +PLG +KD + ++K+KEIK
Sbjct: 152 TKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIK 211
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
NGRLA++A +G V Q+ TGP++NL HL++PWH I
Sbjct: 212 NGRLAMVAMLGIFV-QAYVTHTGPIDNLVEHLSNPWHKTI 250
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 114/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE+L+ + ++ELIH RWAMLA GIL+PE L
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWL 118
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
++ W G Y P T+ V++ + + ++E +R +
Sbjct: 119 ERLGFIDNFNW--FDAGTREYFADPT------TLFVVQLILMGWIEGRRWADMIKPGCVD 170
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K P K K YPGG FDP + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 171 IDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWF- 229
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL H+ADP H NI
Sbjct: 230 QAIYTGEGPIDNLMAHIADPGHCNI 254
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 89 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 148
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L ++ E + + E+ R + D E K
Sbjct: 149 GPEAVWFKTGALLLDGNTLYYFGKNIPI-NLVLAVIAEVVLVGGAEYYRIINGLDLEDKL 207
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENLA HL+
Sbjct: 208 HPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFI-QAYVTGQGPVENLAAHLS 266
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 267 DPFGNNLLTVI 277
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 108/195 (55%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEG 180
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 108/195 (55%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEG 180
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 111/212 (52%), Gaps = 28/212 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDG+ PGDFGFDPL LG PE+L ++EL+HCRWAML GI +PE L
Sbjct: 65 WFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFL 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W + G+ Y T+ ++E I + E +R +
Sbjct: 125 TKIGVLNTPSWYSA--GELEYFTDTT------TLFIVELFFIGWAEGRRWADIIKPGCVN 176
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ + PQK ++ + KEIKNGRLA+LA +G Q
Sbjct: 177 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQ 236
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Y TGP++NL HLADP H I P+
Sbjct: 237 H-IYTATGPIDNLFAHLADPGHATIFAAFTPK 267
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 91 PEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + GG Y G P+P L ++ E + + E+ R + + E K
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPI-NLIVAVIAEIVLVGGAEYYRIINGLNFEDKL 209
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 210 HPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 268
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 269 DPFGNNLLTVI 279
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 107/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L VPE R +E E+IHCRWAML G + PE L
Sbjct: 64 GEP-PSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVPGDG 181
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 182 PLGEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 240
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 241 LENLADHLADPVNNN 255
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG GD+GFDPL LGE PE+L Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLDPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTD 106
Query: 107 AL---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
L G+ N E AV + + T++V++FL + F E +R ++
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYVDYVS 156
Query: 162 -DPEKKK-----------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
+ K+ YPGG +PLG +KD + ++K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMA 216
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+GF VQ S TGP++NL HL++PWH I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 130/247 (52%), Gaps = 39/247 (15%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L S K V+ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
GD GFDPL L E PENL + ++EL++ RWAML V G+L+PE + +W A
Sbjct: 72 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAA-- 129
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 167
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 GKEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG F+PL F+ E K KEI NGRL +LAF+GF +Q + G GP +NL H++
Sbjct: 184 YPGGIFNPLNFAPT----LEAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNLLQHIS 237
Query: 228 DPWHNNI 234
DPWHN I
Sbjct: 238 DPWHNTI 244
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 125/236 (52%), Gaps = 24/236 (10%)
Query: 22 SSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--PPYLDGSAPGDFGFDPLRLGEVPE 79
S+ + F+AV A + S A+ P P +L G PGD+GFD LG P
Sbjct: 6 STCQRAFSAVLFGAEMSKFSTMRFDAEQKGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPV 65
Query: 80 NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE-------WAAVPGGQATYLGT 132
Y E++HCRWAMLA G++VPE L L V E +A + G YLG
Sbjct: 66 AFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGI 125
Query: 133 P---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD---------PEKKKYPGGA-FDPLGF 178
P + G + I + + L + E+ R + P YPGGA FDPLG
Sbjct: 126 PGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGL 185
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
SKDP FE+ KVKEIKNGRLA++A++GF + Q+A G GP++NL HL+DP HNNI
Sbjct: 186 SKDPVAFEDLKVKEIKNGRLAMVAWLGFYI-QAAVTGKGPIQNLVEHLSDPLHNNI 240
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 114/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL G PE+L + ++EL+H RWAMLAV GIL+PE
Sbjct: 71 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEI- 129
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
L W +E++ G+ Y P T+ V + + +VE +R M+
Sbjct: 130 -LQKWGFMEEFSWYTAGEREYFADPW------TLFVTQMALMGWVEGRRWMDYLNPGSVD 182
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 183 IEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 241
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q Y G GPL+NL HLADP H NI
Sbjct: 242 QVVYTGQGPLDNLFAHLADPGHCNI 266
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 122/236 (51%), Gaps = 37/236 (15%)
Query: 30 AVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AVS P A S A++AD W PG P +LDGS PGDFGFDPL L P++L+
Sbjct: 35 AVSRPDA----SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWN 90
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 144
++EL+HCRWAML GI +PE L + W G+ Y T+ V
Sbjct: 91 VQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GEQEYFTDKT------TLFV 142
Query: 145 IEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKF 185
+E + I + E +R S+ DP YPGG FDPLG+ S P K
Sbjct: 143 VELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKL 202
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
+E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I P+
Sbjct: 203 KELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 92 PAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P + + V E + + E+ R + D E K
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAV-VAEVVLVGGAEYYRIINGLDLEDKL 210
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 211 HPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAAHLS 269
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 270 DPFGNNLLTVI 280
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 114/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL G PE+L + ++EL+H RWAMLAV GIL+PE
Sbjct: 68 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEI- 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
L W +E++ G+ Y P T+ V + + +VE +R M+
Sbjct: 127 -LQKWGFMEEFSWYTAGEREYFADPW------TLFVTQMALMGWVEGRRWMDYLNPGSVD 179
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 180 IEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 238
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q Y G GPL+NL HLADP H NI
Sbjct: 239 QVVYTGQGPLDNLFAHLADPGHCNI 263
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 121/228 (53%), Gaps = 27/228 (11%)
Query: 29 TAVSLPAAANATSKYAMSAD-WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T+ + A +A YA S W PG P +LDG+ PGDFGFDPL LG E L+ Y+ +
Sbjct: 15 TSSRVQARRSAVVVYAASRPLWQPGVTPPAHLDGTLPGDFGFDPLNLGVNKEALDWYRNA 74
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
EL + RWAML V GI+ P L + +WA G +P+ +L L+++F
Sbjct: 75 ELQNGRWAMLGVAGIIFPAELTRVGLLNVPDWADA-GKVYAESENAIPFASL---LMVQF 130
Query: 148 LSIAFVEHQR--------------------SMEKDPEKKKYPGGAFDPLGF-SKDPQKFE 186
FVE +R S K YPGG F+PLG + + +
Sbjct: 131 FLFNFVEIKRWEDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGPFNPLGLGNSSKESMD 190
Query: 187 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
++K +EI+NGRLA++AF+GF Q +A G GPL+NLA HLADPW NN
Sbjct: 191 DFKWREIRNGRLAMMAFLGFLAQHAA-TGKGPLDNLADHLADPWANNF 237
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 116/208 (55%), Gaps = 28/208 (13%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W+PG PPYLDG+ PGD+GFDPL LGE P +L+ Y ++EL+HCR+AM V GIL +
Sbjct: 53 ATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTD 112
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEK 165
+ + W + + T + ++ L + FVE +R M+ +P
Sbjct: 113 LIRVSGISNLPVWFEAGATKFDFANT-------TALFFVQLLLMGFVETKRYMDIVNPGS 165
Query: 166 KK------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
+ YPGG F+P+G +KD + E K+KEIKNGRLA++A +GF
Sbjct: 166 QAEEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGF 225
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
VQ S GP++NL HL+DP++NNI
Sbjct: 226 FVQASVT-HVGPIDNLLIHLSDPFNNNI 252
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 112/200 (56%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +LDG PGD+GFD LG P Y E++HCRWAML G++VPE L L V
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 116 AQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
E +A + G YLG P + G + I + + L + E+ R +
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYCGIEAL 122
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG SKDP FEE KVKEIKNGRLA++A++GF V Q+A
Sbjct: 123 EPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYV-QAAVT 181
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HL+DP HNNI
Sbjct: 182 GKGPVQNLIEHLSDPLHNNI 201
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 136/266 (51%), Gaps = 34/266 (12%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANA-TSKYAMSAD-----WMPGEP 54
MAS+ S IA + PS L K + +++PA + S A++AD W PG
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRQDASVRAVAADPDRPIWFPGST 60
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV 114
P +LDGS PGDFGFDPL L P++L+ ++E++HCRWAML GI +PE L +
Sbjct: 61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120
Query: 115 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--- 163
W G+ Y T+ V+E + I + E +R S+ DP
Sbjct: 121 NTPSWYTA--GEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP 172
Query: 164 ------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y G
Sbjct: 173 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTG 231
Query: 216 TGPLENLATHLADPWHNNIGDVIIPR 241
TGP++NL HLADP H I P+
Sbjct: 232 TGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 116/203 (57%), Gaps = 26/203 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG+ P +LDGS P D+GFDPL LG P+ L +++EL+HCRWAM+ V GILVP L
Sbjct: 2 WFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALL 61
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
+ W G+ + VP+ L L++EFL++ FVE +R +
Sbjct: 62 TKLGAMNVPVW--FEAGKVANDNSSVPFSAL---LMVEFLAMGFVETKRWYDIKSPGSQG 116
Query: 161 -------KDPEKKK---YPGGA-FDPLGFSKDPQK-FEEYKVKEIKNGRLALLAFVGFCV 208
D K K YPGG FDP GFSK ++ ++ +VKEI NGRLA++A VGF
Sbjct: 117 DGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWA 176
Query: 209 QQSAYPGTGPLENLATHLADPWH 231
Q +A G GP++NL H+ADP H
Sbjct: 177 QYAA-TGKGPVDNLFDHIADPGH 198
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 125/243 (51%), Gaps = 35/243 (14%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K ++ + P+ +TS A+ W PG PP+LDGS PGDFGFDPL LG P
Sbjct: 37 KLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 79 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGT 138
E+L ++EL+H RWAML GI +PE L + W G Q + T
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA-GEQEYFTDT------ 149
Query: 139 LPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-S 179
T+ ++E + I + E +R + DP YPGG FDPLG+ S
Sbjct: 150 -TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 208
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL-ATHLADPWHNNIGDVI 238
PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL A HLADP H I
Sbjct: 209 ASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAAHLADP-HATIFAAF 266
Query: 239 IPR 241
P+
Sbjct: 267 TPK 269
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 136/266 (51%), Gaps = 34/266 (12%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAAN-ATSKYAMSAD-----WMPGEP 54
MAS+ S IA + PS L K + +++PA + S A++AD W PG
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV 114
P +LDGS PGDFGFDPL L P++L+ ++E++HCRWAML GI +PE L +
Sbjct: 61 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120
Query: 115 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--- 163
W G+ Y T+ V+E + I + E +R S+ DP
Sbjct: 121 NTPSWYTA--GEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP 172
Query: 164 ------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q Y G
Sbjct: 173 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTG 231
Query: 216 TGPLENLATHLADPWHNNIGDVIIPR 241
TGP++NL HLADP H I P+
Sbjct: 232 TGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P YL G PGD+G+D L PE RY+E ELIH RWA+L GIL PE L G +
Sbjct: 54 PSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVD 113
Query: 113 WVQAQEW----AAVPGGQA-TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP-- 163
+ +A W A++ G YLG P + ++ L+ + + + E R + P
Sbjct: 114 FGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVD 173
Query: 164 --EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
K YPGG FDPLG DP+ E KVKEIKNGRLA ++ GF V Q+ G GPLEN
Sbjct: 174 TSGDKLYPGGFFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFGFFV-QALVTGKGPLEN 232
Query: 222 LATHLADPWHNN 233
L HLADPW+NN
Sbjct: 233 LDDHLADPWNNN 244
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 81 PAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 140
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L ++ E + + E+ R + D E K
Sbjct: 141 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVVAVIAEVVLLGGAEYYRIINGLDLEDKL 199
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + K KEIKNGRLA+ A +GF + Q+ G GP+ENL+ HL+
Sbjct: 200 HPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLSKHLS 258
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 259 DPFGNNLLTVI 269
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 114/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV GIL+PE
Sbjct: 70 WFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVAGILIPEI- 128
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
L W +E++ G+ Y P T+ + + + + E +R M+
Sbjct: 129 -LQKWGFMEEFSWYTAGEREYFADPW------TLFIAQMALMGWAEGRRWMDYLNPGSVD 181
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 182 IEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 240
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL HLADP H NI
Sbjct: 241 QAVYTGQGPVDNLLAHLADPGHCNI 265
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 28/206 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG PPYLDG+ GD+GFDPL LGE PE+L+ Y ++EL+H R+AML + GIL + L
Sbjct: 63 WLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLL 122
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEK 165
+ + W G Y + + T+LV++ L + + E +R M+ +
Sbjct: 123 RVTGIRKLPVW--YEAGAVKY-----EFASTRTLLVVQLLWMGYAETRRYMDYVSPGSQN 175
Query: 166 KK----------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
K+ YPGG +P G +KD + ++K+KEIKNGRLA++A +G V
Sbjct: 176 KEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFV 235
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+A TGP++NL HL+DPWH I
Sbjct: 236 -QAAVTHTGPIDNLLEHLSDPWHKTI 260
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 119/206 (57%), Gaps = 30/206 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
WMPG P YL+G+ PGDFGFDPL LG+ P L+ Y ++EL++ R+AMLAV GILVPE L
Sbjct: 61 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELL 120
Query: 109 -GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------S 158
+G +W A A G+ Y ++ ++ L A+VE +R S
Sbjct: 121 SNIGFSWPGAGV-AWYDAGKFEYFAPA------SSLFGVQMLLFAWVEIRRYQDFVKPGS 173
Query: 159 MEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+DP + YPGG FDP G+SK K K+KEIKNGRLA+LAF GF +
Sbjct: 174 ANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIK--SLKLKEIKNGRLAMLAFAGF-I 230
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ GT PL+NL+THLADPW +
Sbjct: 231 GQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 113/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL G PE+L + ++EL+H RWAMLAV GIL+PE
Sbjct: 71 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEI- 129
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
L W +E++ G+ Y P T+ V + + +VE +R M+
Sbjct: 130 -LQKWGFMEEFSWYTAGEREYFADPW------TLFVTQMALMGWVEGRRWMDYLNPGSVD 182
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 183 IEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 241
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q Y G GPL NL HLADP H NI
Sbjct: 242 QVVYTGQGPLGNLFAHLADPGHCNI 266
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G +Y G +P L ++ E + + E+ R + D E K
Sbjct: 145 GPEAVWFKTGALLLDGNTLSYFGNSIPI-NLVVAVIAEVVLVGGAEYYRIINGLDLEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + F + Q+ G GP+ENLA HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENLAKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 84 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 143
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L ++ E + + E+ R + D E K
Sbjct: 144 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLVVAVIAEVVLVGGAEYYRIINGLDLEDKL 202
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + + F + Q+ G GP+ENLA HL+
Sbjct: 203 HPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMLAFFI-QAYVTGEGPVENLAKHLS 261
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 262 DPFGNNLLTVI 272
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P P YLDGS PGDFG+DPL L P+ L+ ++EL + RWAML V G+L + L
Sbjct: 46 WCPGIPAPSYLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLL 105
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+W P Y P W +L +I+ + + FVE +R S
Sbjct: 106 QGILPDNVPQWYDAPLLADVY---PAEWKSL---FIIQMILMGFVEARRWADINTPGSAN 159
Query: 161 KDPEKKK----------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
DP YPGG FDPLGFSK EE K KE++NGRLA++A +G +Q
Sbjct: 160 VDPVFNNNKLPDSGTPGYPGGMFDPLGFSKG--NLEESKWKELRNGRLAMVASLGMFIQY 217
Query: 211 SAYPGTGPLENLATHLADPWHNNI 234
A G PL NLA HLADPWHNN+
Sbjct: 218 DAT-GKSPLTNLADHLADPWHNNV 240
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 119/206 (57%), Gaps = 30/206 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
WMPG P YL+G+ PGDFGFDPL LG+ P L+ Y ++EL++ R+AMLAV GILVPE L
Sbjct: 61 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELL 120
Query: 109 -GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------S 158
+G +W A A G+ Y ++ ++ L A+VE +R S
Sbjct: 121 SNIGFSWPGAGV-AWYDAGKFEYFAPA------SSLFGVQMLLFAWVEIRRYQDFVKPGS 173
Query: 159 MEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+DP + YPGG FDP G+SK K K+KEIKNGRLA+LAF GF +
Sbjct: 174 ANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIK--SLKLKEIKNGRLAMLAFAGF-I 230
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ GT PL+NL+THLADPW +
Sbjct: 231 GQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 116/205 (56%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV GILVPE L
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELL 118
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+++ W G Y P T+ V++ + +VE +R S++
Sbjct: 119 ERIGYIENFSW--YDAGTREYFVDPT------TLFVVQMGLMGWVEGRRWADIVNPGSVD 170
Query: 161 KDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 171 IEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 229
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP+ENL HLADP H NI
Sbjct: 230 QAIYTGEGPIENLMAHLADPGHCNI 254
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 116/205 (56%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV GILVPE L
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELL 118
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+++ W G Y P T+ V++ + +VE +R S++
Sbjct: 119 EKIGYIENFSW--YDAGAREYFVDPT------TLFVVQMGLMGWVEGRRWADMVNPGSVD 170
Query: 161 KDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 171 IEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 229
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP+ENL HLADP H NI
Sbjct: 230 QAIYTGEGPIENLMAHLADPGHCNI 254
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 22/207 (10%)
Query: 31 VSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN-LERYKESEL 89
V+ P A++ A W PG P +LDGS GD+GFDPLRLG ++ L+ Y+E EL
Sbjct: 17 VARPTRASSVVVAAARPTWYPGATPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYREGEL 76
Query: 90 IHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS 149
+ RWAM AV GIL + +GLG W W A ++++ L T++++E ++
Sbjct: 77 TNGRWAMAAVAGILFTDLVGLGPW-----WEAGAKVESSF--------DLKTLIIVEIVT 123
Query: 150 IAFVE--HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
A +E ++ EK E P FDPL D E ++KE+KNGRLA+LA +GF
Sbjct: 124 FAILEGFRAKAYEKTGETGLGPFAPFDPLNMRSD-----ETRLKELKNGRLAMLAILGFS 178
Query: 208 VQQSAYPGTGPLENLATHLADPWHNNI 234
Q+A G GP+E L HLADP HNNI
Sbjct: 179 -SQAAVQGKGPIECLQAHLADPGHNNI 204
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 108/190 (56%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML G ++PEAL N
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
W + G Y G +P + ++ L ++ + D E K +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLH 201
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+D
Sbjct: 202 PGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSD 260
Query: 229 PWHNNIGDVI 238
P+ NN+ VI
Sbjct: 261 PFGNNLLTVI 270
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 108/190 (56%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML G ++PEAL N
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
W + G Y G +P + ++ L ++ + D E K +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGSEYYRITNGLDFEDKLH 201
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+D
Sbjct: 202 PGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSD 260
Query: 229 PWHNNIGDVI 238
P+ NN+ VI
Sbjct: 261 PFGNNLLTVI 270
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E ++IHCRWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 181
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF Q+ G GP
Sbjct: 182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGF-FAQAIVTGKGP 240
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 241 LENLADHLADPVNNN 255
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 105/191 (54%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L ++ E + + E+ R D E K
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLVVAVIAEVILVGGAEYYRITNGLDLEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + F + Q+ G GP+ENLA HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENLAKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 112/200 (56%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +L G PGD+GFD LG P Y E++HCRWAMLA G++VPE L L V
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVH 177
Query: 116 AQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
E +A + G YLG P + G + I + + L + E+ R +
Sbjct: 178 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEAL 237
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG SKDP FE+ KVKEIKNGRLA++A++GF + Q+A
Sbjct: 238 EPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI-QAAVT 296
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HL+DP HNNI
Sbjct: 297 GKGPIQNLVEHLSDPLHNNI 316
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 112/200 (56%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +L G PGD+GFD LG P Y E++HCRWAMLA G++VPE L L V
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFEVVH 177
Query: 116 AQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
E +A + G YLG P + G + I + + L + E+ R +
Sbjct: 178 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEAL 237
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG SKDP FE+ KVKEIKNGRLA++A++GF + Q+A
Sbjct: 238 EPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI-QAAVT 296
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HL+DP HNNI
Sbjct: 297 GKGPIQNLVEHLSDPLHNNI 316
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 108/190 (56%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML G ++PEAL N
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
W + G Y G +P + ++ L ++ + D E K +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLH 201
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+D
Sbjct: 202 PGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSD 260
Query: 229 PWHNNIGDVI 238
P+ NN+ VI
Sbjct: 261 PFGNNLLTVI 270
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 105/191 (54%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L ++ E + + E+ R D E K
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLVVAVIAEVVLVGGAEYYRITNGLDLEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + F + Q+ G GP+ENLA HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENLAKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 116/210 (55%), Gaps = 28/210 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P YLDG+ PGDFGFDPL LGE PE+L+ Y ++EL+H R+AML V GILV + L
Sbjct: 61 WLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLL 120
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK 167
+ W G Y + T++V++ L + + E +R M+ P +
Sbjct: 121 RVAGVNSIPIW--FEAGAVKY-----EFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQA 173
Query: 168 ------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
YPGG +PLG +KD + E+K+KEIKNGRLA++A +G V
Sbjct: 174 KEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFV 233
Query: 209 QQSAYPGTGPLENLATHLADPWHNNIGDVI 238
Q S GP++NL HL++PWH I ++
Sbjct: 234 QASV-THVGPIDNLVEHLSNPWHKTIIQIL 262
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 109/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLGF+ DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 121/246 (49%), Gaps = 40/246 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
+ L ++K+ A + ++ A W PG P P YL G GD+GFDPL G+
Sbjct: 2 AALVANKAALGFRAPAQARRSVVARAEQRASWFPGNPAPEYLKGELAGDYGFDPLGFGDE 61
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG-------GQATYL 130
P LE ++EL+HCRWAML GIL+PE +GN Q +A PG +
Sbjct: 62 PRRLEWMVQAELVHCRWAMLGAAGILLPE---IGNKTGMQ--SAAPGLAFPHWWEAGKVV 116
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQRSME------------------------KDP--- 163
PW ++ ++ FL + + EH+R + ++P
Sbjct: 117 AESGPW-SMGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVA 175
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
++ YPGG FDP SK+ K++ YK E+ NGRLA+ A GF Q AYPG GP++NL
Sbjct: 176 KENGYPGGIFDPFQMSKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGPIDNLV 235
Query: 224 THLADP 229
H+++P
Sbjct: 236 DHVSNP 241
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 90 PEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 149
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L ++ E + + E+ R + + E K
Sbjct: 150 GPEAVWFKTGALLLDGNTLNYFGNNIPI-NLIVAVIAEVVLVGGAEYYRIINGLNFEDKL 208
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 209 HPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYF-QAYVTGEGPVENLAKHLS 267
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 268 DPFGNNLLTVI 278
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 110/197 (55%), Gaps = 11/197 (5%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML V G ++PEA
Sbjct: 58 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEACN 116
Query: 110 L--GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
N W + G Y G +P L ++ E + + E+ R +
Sbjct: 117 KFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPI-NLILAVIAEVVLVGGAEYYRIINGL 175
Query: 162 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
D E K +PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+EN
Sbjct: 176 DLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVEN 234
Query: 222 LATHLADPWHNNIGDVI 238
LA HL+DP+ NN+ VI
Sbjct: 235 LAKHLSDPFGNNLLTVI 251
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 125/253 (49%), Gaps = 30/253 (11%)
Query: 3 SNTLMSCGIATTAFPSVLSSSKSKFFTAV--SLPAAANATSKYAMSADWMPGEPRPPYLD 60
S + + G A T+F + + ++ A + +A T W+PG P +LD
Sbjct: 20 SKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEAPKWLD 79
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GS PGD+GFDPL L P L ++EL+HCRWAML GI +PE L + W
Sbjct: 80 GSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSW- 138
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--------- 163
G ATY T+ ++E L +A+ E +R S+ DP
Sbjct: 139 -YKAGDATYFADQ------GTLFIVELLLMAWAESRRWADIARPGSVNTDPIFPNNKLTG 191
Query: 164 EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
YPGG FDPLG+ S K +E + KE+KNGRLA+LA +G VQ + GP++N
Sbjct: 192 TDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQANVTH-VGPIDN 250
Query: 222 LATHLADPWHNNI 234
L HLADP+H I
Sbjct: 251 LFAHLADPYHTTI 263
>gi|118489878|gb|ABK96737.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 275
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD GFDP LG+ E
Sbjct: 58 WFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDAT 117
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAML G + EAL W A + + G
Sbjct: 118 EVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEG- 176
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE + I ++E QR+ E DPEK+ YPGG FDPLG + DP+K
Sbjct: 177 -SSYLGQPLPF-SLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGYFDPLGLASDPEKI 234
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
E ++ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 235 ENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 272
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 109/217 (50%), Gaps = 21/217 (9%)
Query: 38 NATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
N + +A S + W PG P +L G PGD GFDPL L + PE+ + ++SE+ H R
Sbjct: 348 NTVAMFAASGEKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGR 407
Query: 94 WAMLAVPGILVPEALGLGNWVQAQEW----AAVPGGQATYLGTP--VPWGTLPTILVIEF 147
WAML + G LVPE G Q W A G YLG P V +P I
Sbjct: 408 WAMLGLVGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTL 467
Query: 148 LSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 201
L +E R K E+ YPGG FDPL P E K+KEIKNGRLA++
Sbjct: 468 LLFLPIEAWRWNGQIAPEAKSAERTTYPGGPFDPLKLGASP----ELKLKEIKNGRLAMV 523
Query: 202 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
GF QS G GPL NLA HLADP HNN+ + +
Sbjct: 524 GMFGFWA-QSYVTGEGPLANLAAHLADPAHNNLLNTV 559
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 111/217 (51%), Gaps = 21/217 (9%)
Query: 38 NATSKYAMSAD----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 93
N + +A S + W PG P +L G PGD GFDP L + P + ++++SE+ H R
Sbjct: 139 NTVAMFAASGEKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGR 198
Query: 94 WAMLAVPGILVPEALGLGNWVQAQEW--AAVPGGQAT--YLGTP--VPWGTLPTILVIEF 147
WAML + G LVPE G Q W AA + YLG P V + I +
Sbjct: 199 WAMLGLVGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVSFIALSTL 258
Query: 148 LSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALL 201
L + VE R S K E+ YPGG FDPL P E K+KEIKNGRLA++
Sbjct: 259 LLMGPVEAWRWNGALASEAKSAERTTYPGGPFDPLKLGASP----ELKLKEIKNGRLAMV 314
Query: 202 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
GF QS G GPL NLA HLADP HNN+ + +
Sbjct: 315 GMFGFWA-QSYVTGEGPLANLAAHLADPAHNNLLNTV 350
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 125 GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM------EKDPEKKKYPGGAFDPL 176
G YLG P V +P I L +E R K E YPGG FDPL
Sbjct: 25 GSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPDAKSKEWTTYPGGPFDPL 84
Query: 177 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236
P E K+KEIKNGRLA++ GF Q S G GPL NLA HLADP HNN+ +
Sbjct: 85 KLGASP----ELKLKEIKNGRLAMVGMFGFWAQ-SYVTGEGPLANLAAHLADPAHNNLLN 139
Query: 237 VI 238
+
Sbjct: 140 TV 141
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 37/155 (23%)
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP-GGQA 127
FDPL+LG PE K E+ + R AM+ + G W Q+ P A
Sbjct: 81 FDPLKLGASPE----LKLKEIKNGRLAMVGM----------FGFWAQSYVTGEGPLANLA 126
Query: 128 TYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE-----------KKKYPGG-AFDP 175
+L P L T+ + S EK P +YPG FDP
Sbjct: 127 AHLADPAHNNLLNTVAMF----------AASGEKRPTWFPGAEAPTWLTGEYPGDRGFDP 176
Query: 176 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
G +KDP F +++ E+ +GR A+L VG V +
Sbjct: 177 FGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPE 211
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 109/188 (57%), Gaps = 22/188 (11%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDG+ GD+GFDPLRLG PE L+ ++E+EL + RWAM AV GIL + +
Sbjct: 32 WYPGATAPKHLDGTMLGDYGFDPLRLGTNPEQLKWFREAELTNGRWAMAAVAGILFTDLV 91
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRS--MEKDPEKK 166
GL + W A G + L T PT+ +IE A +E +R +K E
Sbjct: 92 GLPKF-----WLA--GAEKYALDT-------PTLALIEVAVFAVLEGKRYDIYKKTGETG 137
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
FDPLG K EE K+KE+KNGRLA+LAFVGFC Q+A G GP+E L H+
Sbjct: 138 FLSFAPFDPLGM-----KSEEMKLKELKNGRLAMLAFVGFC-SQAAVRGKGPIECLTDHI 191
Query: 227 ADPWHNNI 234
ADP H NI
Sbjct: 192 ADPGHVNI 199
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PG+FGFDPL LG PE L+ ++EL+H RWAML V GIL+PE L
Sbjct: 65 WFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEIL 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+V+ W G Y P T+ +++ + +VE +R S++
Sbjct: 125 EKIGYVKNFSWYNA--GSVEYFADPT------TLFIVQLALMGWVEGRRWADIVNPGSVD 176
Query: 161 KDPEKKK---------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAF+GFC
Sbjct: 177 IEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF- 235
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G P++NL HLADP H NI
Sbjct: 236 QAVYVGGSPIDNLMAHLADPGHVNI 260
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 112/212 (52%), Gaps = 32/212 (15%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-GLGNWV 114
P YL+G GD+G+DPL LG+ PE + +Y+E+EL+H RWAMLA GIL+PE L G +
Sbjct: 72 PEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 131
Query: 115 QAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRSMEKDP 163
+ W + GG Y VPWG + ++ +E + VE R P
Sbjct: 132 KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGP 189
Query: 164 EKKK-----------------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
YPGG FDPLG + DP+ +E KVKEIKNGRLA+++ +GF
Sbjct: 190 AGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGF 249
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
V QS G GP N H+ADP+ N+ V+
Sbjct: 250 AV-QSYVTGEGPYANWTKHVADPFGYNLLTVL 280
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G GD+G+DP LG+ PEN +Y+ ELIH RWAML G ++PEAL N
Sbjct: 85 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGCIIPEALNKYGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G +Y G +P L +V E + + E+ R D E K
Sbjct: 145 GPEAVWFKTGALLLDGNTLSYFGKNIPI-NLVLAVVGEVVLLGGAEYYRITNGLDFEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPL +KDP++ KVKEIKNGRLA+ + F + Q+ G GP+ENL+ HL+
Sbjct: 204 HPGGPFDPLDLAKDPEQGALLKVKEIKNGRLAMFSMFAFFI-QAYVTGEGPVENLSKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 109/200 (54%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+GFD L E P +RY E++H RWAMLA G L+PE L L
Sbjct: 133 PTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFH 192
Query: 116 AQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
E ++ + G YLG P + + +LVI F + E+ R +
Sbjct: 193 FIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEAL 252
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPL SKDP FEE KVKEIKNGRLA++A++GF + Q+A
Sbjct: 253 EPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYI-QAALT 311
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP+ENL H++DP HNN+
Sbjct: 312 GKGPVENLVEHISDPLHNNL 331
>gi|297823921|ref|XP_002879843.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
gi|297325682|gb|EFH56102.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
Length = 276
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 116/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQDSS 118
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAML G + EAL W A + V G
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG- 177
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K
Sbjct: 178 -SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKL 235
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
+ K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT
Sbjct: 236 DTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPISFLAT 273
>gi|224101127|ref|XP_002312153.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
gi|222851973|gb|EEE89520.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
Length = 275
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD GFDP LG+ E
Sbjct: 58 WFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDAT 117
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E ELIH RWAML G + EAL W A + + G
Sbjct: 118 EVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEG- 176
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE + + ++E QR+ E DPEK+ YPGG FDPLG + DP+K
Sbjct: 177 -SSYLGQPLPF-SLTTLIWIEVIVVGYIEFQRNAELDPEKRLYPGGYFDPLGLASDPEKI 234
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
E ++ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 235 ENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 272
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 115/200 (57%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P +L G PGD+GFD LG P Y E++HCRWAMLA G+++PE L GL +
Sbjct: 111 PEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALGVVIPELLDLFGLVH 170
Query: 113 WVQAQEW----AAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
+V+ W A + G YLG P + G + I + + L + E+ R +
Sbjct: 171 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEAL 230
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG SKDP FE+ KVKEIKNGRLA++A++GF + Q+A
Sbjct: 231 EPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYI-QAAVT 289
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HL+DP HNNI
Sbjct: 290 GKGPVQNLVEHLSDPLHNNI 309
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PEN + +E E+IHCRWAML G + PE L
Sbjct: 72 GEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARN 130
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 190 LGEVTDP---IYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 245
Query: 217 GPLENLATHLADPWHNN 233
GP+ENLA HLADP +NN
Sbjct: 246 GPIENLADHLADPVNNN 262
>gi|15225630|ref|NP_181539.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
gi|38503231|sp|Q9S7W1.1|CB4C_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.3,
chloroplastic; AltName: Full=LHCB4.3; AltName:
Full=LHCII protein 4.3; Flags: Precursor
gi|4741956|gb|AAD28775.1|AF134128_1 Lhcb4:3 protein [Arabidopsis thaliana]
gi|17979325|gb|AAL49888.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|20465761|gb|AAM20369.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330254684|gb|AEC09778.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
Length = 276
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 116/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 118
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAML G + EAL W A + V G
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG- 177
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K
Sbjct: 178 -SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKL 235
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
+ K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT
Sbjct: 236 DTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 108/194 (55%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-- 109
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE LG
Sbjct: 55 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 113
Query: 110 ---LGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ IL + L + +E R
Sbjct: 114 GVPFGEAVWFKAGAQIFQEGG-LDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGP 172
Query: 161 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 173 LGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 231
Query: 220 ENLATHLADPWHNN 233
+NL+ HLA+P NN
Sbjct: 232 QNLSDHLANPGTNN 245
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 106/191 (55%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + P++ E+Y+ ELIH RWAML G ++PEA N
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L +V E + + E+ R + K
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVILVGGAEYFRITNGLGFDDKL 210
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF Q+ G GP+ENLA HL+
Sbjct: 211 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFF-QAYVTGEGPVENLAKHLS 269
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 270 DPFGNNLLTVI 280
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 113/205 (55%), Gaps = 32/205 (15%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-G 109
P P YLDG+ PGDFGFDPL LG P L+ Y ++EL+H R+AMLAV GILVPE L
Sbjct: 63 PAATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTN 122
Query: 110 LG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+G +W A A G+ Y ++ ++ L A+ E +R S
Sbjct: 123 IGFSWPGAGV-AWYDAGKFQYFAPA------SSLFGVQMLLFAWAELRRYQDFVKPGSAN 175
Query: 161 KDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
+DP + YPGG FDP G+SK K K KEIKNGRLA+LAF GF Q
Sbjct: 176 QDPIFSNNKLPDGNEPGYPGGIFDPFGWSKGDMK--SLKTKEIKNGRLAMLAFAGFAAQ- 232
Query: 211 SAY-PGTGPLENLATHLADPWHNNI 234
AY GT PL+NLATHLADPW +
Sbjct: 233 -AYTTGTTPLKNLATHLADPWATTV 256
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 241 NLYDHVADPVANN 253
>gi|21594018|gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 116/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDXXGLDQNLAKNVAGDIIGIIQESS 118
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAML G + EAL W A + V G
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG- 177
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K
Sbjct: 178 -SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKL 235
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
+ K+ EIK+ RLA++AF+ F + Q+A+ G GP+ LAT
Sbjct: 236 DTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P +LDGS PGD+GFDPL L P L ++EL+HCRWAML GI +PE L
Sbjct: 17 WLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELL 76
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G ATY T+ ++E L +A+ E +R S+
Sbjct: 77 TKIGILNTPSW--YKAGDATYFADQ------GTLFIVELLLMAWAESRRWADIARPGSVN 128
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDPLG+ S K +E + KE+KNGRLA+LA +G VQ
Sbjct: 129 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQ 188
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
+ GP++NL HLADP+H I
Sbjct: 189 ANV-THVGPIDNLFAHLADPYHTTI 212
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVEFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 240 LENLADHLADPVNNN 254
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 179
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 180 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 238
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 239 LENLADHLADPVNNN 253
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 112/212 (52%), Gaps = 32/212 (15%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-GLGNWV 114
P YL+G GD+G+DPL LG+ PE + +Y+E+EL+H RWAMLA GIL+PE L G +
Sbjct: 42 PDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 101
Query: 115 QAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRSMEKDP 163
+ W + GG Y VPWG + ++ +E + VE R P
Sbjct: 102 KGGTWFETGAEMLNGGTLNYF--AVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGSGP 159
Query: 164 EKKK-----------------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
YPGG FDPLG + DP+ +E KVKEIKNGRLA+++ +GF
Sbjct: 160 AGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGF 219
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
V QS G GP N H+ADP+ N+ V+
Sbjct: 220 AV-QSYVTGEGPYANWTKHVADPFGYNLLTVL 250
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 105/193 (54%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 35 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 94
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 95 VTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 153
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 154 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 212
Query: 221 NLATHLADPWHNN 233
NL+ H+ADP NN
Sbjct: 213 NLSDHIADPVANN 225
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 127/242 (52%), Gaps = 39/242 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + W PG P P +LDG+ GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--LTRPVWFPGNPAPAHLDGTLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPE-----ALGLGNWVQAQEWAAVPGGQATYLGT 132
E L Y ++EL+H R+AML GI++ LG W A G+
Sbjct: 62 KETLRWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 173
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 174 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
DP+G S+ D K+ EYK KE+KNGRLA++A +GF Q +A G GPL+NL+ HLADP H
Sbjct: 171 DPMGLSRGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNLSDHLADPNHI 229
Query: 233 NI 234
N
Sbjct: 230 NF 231
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 116/213 (54%), Gaps = 34/213 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG PPYL+G+ GDFGFDPL LGE PENL Y ++EL+H R+AM V GILV + L
Sbjct: 59 WLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLL 118
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPE 164
G+ N E AV + + + +++ + + FVE +R M+ +P
Sbjct: 119 RVTGISNLPVWYEAGAV----------KFEFASTEALFIVQLILMGFVETKRYMDFTNPG 168
Query: 165 KKK------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
+ YPGG +PLG ++D + ++K+KEIKNGRLA++A +G
Sbjct: 169 SQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLG 228
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
VQ S GP+ENL HL++PWH I I
Sbjct: 229 VFVQASV-THAGPIENLVEHLSNPWHKTIIQTI 260
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL+ H+ DP NN
Sbjct: 241 NLSDHINDPVANN 253
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 115/205 (56%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ + ++EL+H RWAMLAV GILVPE L
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELL 118
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+++ W G Y P T+ V++ + +VE +R S++
Sbjct: 119 ERIGYIENFSW--YDAGTREYFVDPT------TLFVVQMGLMGWVEGRRWADIVNPGSVD 170
Query: 161 KDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+P+ YPGG FDP+ + + P+ + KEIKNG LA+LAFVGF
Sbjct: 171 IEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGGLAMLAFVGFWF- 229
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP+ENL HLADP H NI
Sbjct: 230 QAIYTGEGPIENLMAHLADPGHCNI 254
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 109/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPVNNN 254
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 113/200 (56%), Gaps = 24/200 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL----GLG 111
P +L GS PGD+GFD LG+ P +++ E++H RWAMLA G+++PE L G+
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGV- 174
Query: 112 NWVQAQEW----AAVPGGQATYLGTP----VPWGTLPTILVIEFLSIAFVEHQRSMEKD- 162
N+ ++ W A + G YLG P V + I + +FL + E+ R +
Sbjct: 175 NFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEA 234
Query: 163 --------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
P YPGG FDPLG SKDP FEE KVKEIKNGRLA++A++GF V Q+
Sbjct: 235 LEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYV-QALV 293
Query: 214 PGTGPLENLATHLADPWHNN 233
GPLENL HL DP HNN
Sbjct: 294 TKKGPLENLLDHLQDPLHNN 313
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 112/206 (54%), Gaps = 28/206 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P +LDG+ GDFGFDPL LG+ P++L Y ++EL+H R+AM V GIL + L
Sbjct: 5 WLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLL 64
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK------- 161
W + + T T+ V++ + + FVE +R M+
Sbjct: 65 RASGRTDIPVWFEAGATKFDFADT-------TTLFVVQLILMGFVETKRWMDIVKPGSQA 117
Query: 162 ------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+ + YPGG F+PLGF+ DP K + + KEIKNGRLA++A VGF V
Sbjct: 118 AEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGFMV 177
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ TGP+ENL THL+DP HN I
Sbjct: 178 -QAYVTKTGPIENLLTHLSDPVHNTI 202
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 42 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 100
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 101 GVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 159
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 160 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 218
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 219 LENLADHLADPVNNN 233
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 59 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 117
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 118 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 176
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 177 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 232
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 233 GKGPLENLADHLADPVNNN 251
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 17 PSVLSSSKSKFFTAVSLPAAANATSKYAMSAD------WMPGEPRPPYLDGSAPGDFGFD 70
PS L K + +S+ A + + + A W PG P +LDGS PGDFGFD
Sbjct: 16 PSFLCGKKLRLNKKLSVAAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFD 75
Query: 71 PLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL 130
PL L P++L+ ++E++HCRWAML GI +PE L + W G+ Y
Sbjct: 76 PLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GEQEYF 133
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA- 172
T+ V+E + I + E +R S+ DP YPGG
Sbjct: 134 TDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLW 187
Query: 173 FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
FDPLG+ S P K +E + KEIKNGRL +LA +G Q Y GTGP++NL HLADP H
Sbjct: 188 FDPLGWGSGSPAKIKELRTKEIKNGRLTMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGH 246
Query: 232 NNI 234
I
Sbjct: 247 ATI 249
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 126/242 (52%), Gaps = 39/242 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S++ ++ F A P + K A W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIVQRRAAFGVARQTPRSVRV--KAATRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPE-----ALGLGNWVQAQEWAAVPGGQATYLGT 132
P+ L+ Y ++EL+H R+AML GI++ LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKK-----------------KYPGGA-F 173
+ PT+L+ + + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFF 170
Query: 174 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
DP+G S+ D K++EYK KEIKNGRLA++A +GF Q +A G GPL+NLA HLADP H
Sbjct: 171 DPMGLSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAA-TGKGPLDNLADHLADPNHV 229
Query: 233 NI 234
N
Sbjct: 230 NF 231
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 113/205 (55%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLAV GILVPE
Sbjct: 62 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEV- 120
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
L W ++++ + G Y P T+ V + + + E +R +
Sbjct: 121 -LEKWGFMEDYSWIDAGARDYFADPW------TLFVSQMALMGWAEGRRWADYLNPGCVA 173
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P ++ YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 174 VEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 232
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL HLADP H N+
Sbjct: 233 QAVYTGEGPIDNLLHHLADPGHCNV 257
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL+ H+ADP NN
Sbjct: 241 NLSDHIADPVANN 253
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPVNNN 254
>gi|312281687|dbj|BAJ33709.1| unnamed protein product [Thellungiella halophila]
Length = 276
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 115/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG P +LDGS GD GFDP LG+ E L+
Sbjct: 59 WFPGAKPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGEVIGIIQDSS 118
Query: 83 -----------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
R++E ELIH RWAML G + EAL W A + V G
Sbjct: 119 EINPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG- 177
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG DP+K
Sbjct: 178 -SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNAELDPEKRIYPGGYFDPLGLGSDPEKL 235
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
+ K+ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 236 DTLKLAEIKHSRLAMVAFLIFGL-QAAFTGKGPISFIAT 273
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 180
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 239
Query: 219 LENLATHLADPWHNN 233
LENL+ HLADP +NN
Sbjct: 240 LENLSDHLADPVNNN 254
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 163
G W +A GG YLG P V ++ I + + + VE R +P
Sbjct: 127 GEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNEPLGE 185
Query: 164 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 223 ATHLADPWHNN 233
A HLADP +NN
Sbjct: 245 ADHLADPVNNN 255
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 127/258 (49%), Gaps = 32/258 (12%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADW-----------M 50
AS T +S A A SSS+ V++ AN + + W
Sbjct: 3 ASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPF 62
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-- 108
GE P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 SGE-SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 109 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 161
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGE 180
Query: 162 ------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 PLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QALVTG 236
Query: 216 TGPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 110/199 (55%), Gaps = 22/199 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +L GS PGD+GFD LG+ P +++ E++H RWAMLA G+++PE L V+
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVK 175
Query: 116 AQE-------WAAVPGGQATYLGTP----VPWGTLPTILVIEFLSIAFVEHQRSMEKD-- 162
E +A + G YLG P V + I + +FL + E+ R +
Sbjct: 176 FAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYCGIEAL 235
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPLG SKDP FEE KVKEIKNGRLA++A++GF V Q+
Sbjct: 236 EPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYV-QALVT 294
Query: 215 GTGPLENLATHLADPWHNN 233
GPLENL HL DP HNN
Sbjct: 295 KKGPLENLLDHLQDPLHNN 313
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRN 126
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIAGGP 185
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 186 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 241
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 242 GPLENLADHLADPVNNN 258
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPINNN 254
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 104/188 (55%), Gaps = 12/188 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P+ RY+E E+IH RWAML G +VPE L N
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGALGCVVPELLDGTNHIA 115
Query: 113 WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KK 166
W A G YLG P + ++ L+++ + +++VE R + P
Sbjct: 116 WFNAGATIFSDDGL-QYLGIPGLINAKSIVATLIVQVILMSYVEGYR-VNGGPAGTGLDA 173
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
YPGG+FDPLG + DP F E KVKEIKNGRLA+L+ GF + Q+ G GP+ENL HL
Sbjct: 174 VYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMLSMFGFFI-QAIVTGEGPIENLNKHL 232
Query: 227 ADPWHNNI 234
AD NN
Sbjct: 233 ADASANNF 240
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 109/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 56 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 114
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 115 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 173
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 174 GPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 229
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 230 GKGPLENLADHLADPVNNN 248
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 105/205 (51%), Gaps = 39/205 (19%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG+ P+LDGS PGDFGFDPL L PE + ++EL H RWAML V G + PE L
Sbjct: 42 WYPGKAPAPHLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELL 101
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR----- 157
L NWV A GT W + I+ + E +R
Sbjct: 102 TKIGVADLPNWVDA--------------GTYQYWAPAGPLFFIQMAMFNWAEVRRWQDMK 147
Query: 158 ---SMEKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
SM DP YPGG FD LG++KDP K +E K+KEIKNGRLA++AF+
Sbjct: 148 NPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFL 207
Query: 205 GFCVQQSAYPGTGPLENLATHLADP 229
G C Q G GP+ENL +H+A P
Sbjct: 208 GICAQY-VQTGQGPVENLFSHIASP 231
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPINNN 254
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 108/194 (55%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-- 109
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE LG
Sbjct: 55 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 113
Query: 110 ---LGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ IL + + + +E R
Sbjct: 114 GVPFGESVWFKAGAQIFQEGG-LDYLGNPSLVHAQSILAILGTQVILMGAIEGYRVNGGP 172
Query: 161 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 173 LGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 231
Query: 220 ENLATHLADPWHNN 233
+NL+ HLA+P NN
Sbjct: 232 QNLSDHLANPGVNN 245
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 115
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W A GG YLG P V ++ I + + + VE R
Sbjct: 116 RNGVKFGEAVWFMAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 174
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 175 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 231 GKGPLENLADHIADPVNNN 249
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL----- 110
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA
Sbjct: 87 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFVIPEAFNKFGADC 146
Query: 111 ---GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 167
W + + G Y G +P + ++ L ++ + D E K
Sbjct: 147 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVVAVVAEVVLLGGAEYYRITNGLDLEDKL 205
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 206 HPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFI-QAYVTGKGPVENLAAHLS 264
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 265 DPFGNNLLTVI 275
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I + L + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAGGP 182
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 109/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 59 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 118 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 176
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 177 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 235
Query: 219 LENLATHLADPWHNN 233
+ENLA HLADP NN
Sbjct: 236 IENLADHLADPVTNN 250
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 113/200 (56%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P YL G PGD+GFD LG P Y E++HCRWAMLA G++VPE L GL +
Sbjct: 112 PEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGLVH 171
Query: 113 WVQAQEW----AAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
+V+ W A + G YLG P + G + I + + L + E+ R +
Sbjct: 172 FVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAICQALLMVGPEYARYCGIEAL 231
Query: 163 -------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPLG SKDP FE+ KVKEIKNGRLA++A+ GF + Q+A
Sbjct: 232 EPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYI-QAAVT 290
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HL+DP +NNI
Sbjct: 291 GKGPVQNLVEHLSDPLNNNI 310
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV GIL+PE L
Sbjct: 67 WFPGSAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECL 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
+++ W G Y T+ V + + + + E +R +
Sbjct: 127 ERLGFIENFSW--YEAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIKPGSVD 178
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K P K YPGG FD + + + P+ + KEIKNGRLA+LAFVGFC
Sbjct: 179 IEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF- 237
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y P+ENL HLADP H N+
Sbjct: 238 QATYTSQDPIENLMAHLADPGHCNV 262
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 178
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 182
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 59 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 118 GVKFGEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 176
Query: 163 P----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP
Sbjct: 177 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGP 235
Query: 219 LENLATHLADPWHNN 233
+ENLA HLADP NN
Sbjct: 236 IENLADHLADPVTNN 250
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 163
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 164 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 223 ATHLADPWHNN 233
A HLADP +NN
Sbjct: 245 ADHLADPVNNN 255
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V +L I + + + VE R
Sbjct: 121 RNGVKFGEAGWFKAGSQIFSDGG-LDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG ++ PQ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLE+LA H+ADP +NN
Sbjct: 236 GKGPLEDLADHIADPVNNN 254
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 163
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 164 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 223 ATHLADPWHNN 233
A HLADP +NN
Sbjct: 245 ADHLADPVNNN 255
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HL+DP +NN
Sbjct: 236 GKGPLENLADHLSDPVNNN 254
>gi|255571917|ref|XP_002526901.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223533800|gb|EEF35532.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 282
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 116/219 (52%), Gaps = 47/219 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG P +LDG+ GD GFDP LG+ E
Sbjct: 65 WFPGANPPEWLDGTMVGDRGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGVRVEPN 124
Query: 80 --------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
L+R++E E+IH RWAML G L EAL W A + V G
Sbjct: 125 EVKPTPFQPYSEVFGLQRFRECEVIHGRWAMLGTLGALAVEALTGVAWQDAGKVELVEG- 183
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKF 185
++YLG P+P+ +L T++ IE L I ++E QR+ E DPEK+ YPGG FDPLG + DP+K
Sbjct: 184 -SSYLGQPLPF-SLTTLIWIEVLVIGYIEFQRNAELDPEKRIYPGGYFDPLGLASDPEKK 241
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
E ++ EIK+ RLA++AF+ F + Q+A+ G GP+ +AT
Sbjct: 242 ENLQLAEIKHSRLAMVAFLIFGI-QAAFTGKGPIAFVAT 279
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 105/190 (55%), Gaps = 8/190 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP LG+ PE+ +Y+ ELIH RWAML G ++PEAL N
Sbjct: 88 PEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKFGANC 147
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
W + G Y G +P + ++ L ++ + + + K +
Sbjct: 148 GPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRITNGLEFDDKLH 207
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP ENL HL+D
Sbjct: 208 PGGPFDPLGLATDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPFENLCAHLSD 266
Query: 229 PWHNNIGDVI 238
P+ NN+ VI
Sbjct: 267 PFGNNLLTVI 276
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 112/206 (54%), Gaps = 28/206 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG PP+LDG+ GDFGFDPL L E P +L Y ++EL+HCR+AML V GILV + L
Sbjct: 57 WLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLL 116
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK 167
+ + W G Y + T+ +++ + + FVE +R M+ P +
Sbjct: 117 RVTGISKIPVW--FEAGAVKY-----DFANTKTLFLVQLVLMGFVETKRYMDFVSPGSQA 169
Query: 168 ------------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
YPGG +PLG +KD ++K+KEIKNGRLA++A +G V
Sbjct: 170 KEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFV 229
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q S GP++NL HL++PWH I
Sbjct: 230 QASVTH-VGPIDNLVEHLSNPWHKTI 254
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 106/196 (54%), Gaps = 16/196 (8%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-- 108
P P YL+G PGD+G+D L PE RY+E E+IH RWAML G + PE L
Sbjct: 47 PFTKSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK 106
Query: 109 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 161
G W +A PGG YLG P + ++ I+ + L + +E R +
Sbjct: 107 NGVSFGEAVWWKAGSQIFAPGGL-DYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYR-VNG 164
Query: 162 DPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
P + YPG AFDPLG + DP F E +VKEIKNGRLA+ + GF V Q+ G G
Sbjct: 165 GPAGEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFGFFV-QAIVTGKG 223
Query: 218 PLENLATHLADPWHNN 233
P+ENLA HLA+P NN
Sbjct: 224 PIENLADHLANPSVNN 239
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 182
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + P+N RY+ ELIH RWAML G ++PEA N
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 114 VQAQEWAA-----VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L +V E + + E+ R + D E K
Sbjct: 145 GPEAVWFKTGALLLEGNTLNYFGNSIPI-NLAVAVVAEVVLVGGAEYYRIINGLDLEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENLA HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLAKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 106/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L N V+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVK 126
Query: 116 AQEWAAVPGGQAT-------YLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
E GG YLG P V ++ I + + + VE R +
Sbjct: 127 FGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 107/194 (55%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-- 109
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE LG
Sbjct: 48 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 106
Query: 110 ---LGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG V ++ IL + L + +E R
Sbjct: 107 GVPFGEAVWFKAGAQIFQEGG-LDYLGNSNLVHAQSILAILGTQVLLMGAIEGYRVNGGP 165
Query: 161 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 166 LGEGLDKLYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 224
Query: 220 ENLATHLADPWHNN 233
+NL+ HLA+P NN
Sbjct: 225 QNLSDHLANPGTNN 238
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P Y G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL+ H+ DP NN
Sbjct: 241 NLSDHINDPVANN 253
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 21/199 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P YL G APGD+ +DPL+L + + ++Y E EL+H RWAML G +PE L G+ +
Sbjct: 85 PAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSD 144
Query: 113 WVQAQEWAA----VPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
+++A+ WA + G YLG + G + I + + L + E+ R+ +
Sbjct: 145 FLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIEAL 204
Query: 163 -------PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
P K YPGG FDPLG SKDP F + +VKEIKNGRLAL+A+VGF Q+A
Sbjct: 205 EPLGLYLPGDKNYPGGLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAA-QAAVTR 263
Query: 216 TGPLENLATHLADPWHNNI 234
GP+ +L ADP HNNI
Sbjct: 264 KGPIADLLDFAADPVHNNI 282
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HL+DP +NN
Sbjct: 235 GKGPLENLADHLSDPVNNN 253
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 108/195 (55%), Gaps = 17/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 36 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRN 94
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 95 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-VAGG 152
Query: 163 PEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P K YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 153 PLGKVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 211
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 212 LENLADHLADPVNNN 226
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 109/191 (57%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PG++G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 88 PEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 147
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L +V E + + E+ R + D E K
Sbjct: 148 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLILAVVAEVVLVGGAEYYRIINGLDLEDKL 206
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG +KDP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENLA HL+
Sbjct: 207 HPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFI-QAYVTGQGPVENLAAHLS 265
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 266 DPFGNNLLTVI 276
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HL+DP +NN
Sbjct: 234 GKGPLENLADHLSDPVNNN 252
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 118/225 (52%), Gaps = 24/225 (10%)
Query: 13 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
TA P V+++ A K + W PG P +LD + PGD+GFDPL
Sbjct: 9 VTARPCVVTNKPRNIVGGRRATQKICAEWKDVRESMWYPGATPPAHLDSTMPGDYGFDPL 68
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN-WVQAQEWAAVPGGQATYLG 131
RLG E L Y+E+EL + RWAM+AV GIL +A GL W+ E A+
Sbjct: 69 RLGTNTELLPWYREAELTNGRWAMMAVAGILFTDAFGLPKFWLAGAEKYAI--------- 119
Query: 132 TPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKKYPGGA-FDPLGFSKDPQKFEEYK 189
G P ++ IE +A +E+QR K+ K + FDPL + D F
Sbjct: 120 -----GFAP-LVAIEIALMAVLEYQRFKGWKETGKSGFLAFFPFDPLNMASDEMAF---- 169
Query: 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
KEIKNGRLA++AF+GFC Q+A G GP+E L H+ADPW+NNI
Sbjct: 170 -KEIKNGRLAMIAFLGFC-SQAAVRGMGPIECLKMHIADPWNNNI 212
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 112/205 (54%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA GILVPE
Sbjct: 62 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVPEV- 120
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
L W ++++ + G Y P T+ V + + + E +R +
Sbjct: 121 -LEKWGFMEDYSWIDAGARDYFADPW------TLFVSQMALMGWAEGRRWADYLNPGCVA 173
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P ++ YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 174 VEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 232
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL HLADP H N+
Sbjct: 233 QAVYTGEGPIDNLLHHLADPGHCNV 257
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGGP 180
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGP 179
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 238
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 239 ENLADHLADPVNNN 252
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 241 NLVDHLADPVANN 253
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGP 182
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 49 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 108
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 163
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 109 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 167
Query: 164 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 168 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 226
Query: 223 ATHLADPWHNN 233
A HLADP +NN
Sbjct: 227 ADHLADPVNNN 237
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSQGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L + E + + E+ R + D E K
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLDLEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L + E + + E+ R + D E K
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLDLEDKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 28/214 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P YLDG+ GD+GFDPL LGE PE+L Y ++EL+H R+AML V GILV + L
Sbjct: 60 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 119
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME---KDPEK 165
+ + W + + T T+++++ L + F E +R M+ +
Sbjct: 120 RVTGLSKIPVWFEAGAVKYEFTNT-------QTLIIVQLLLMGFAETKRYMDFIGPGSQA 172
Query: 166 KK----------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
K+ YPGG +PLG +KD + E K+KEIKNGRLA++A +G V
Sbjct: 173 KEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFV 232
Query: 209 QQSAYPGTGPLENLATHLADPWHNNIGDVIIPRG 242
Q S GP++NL HL++PWH + + G
Sbjct: 233 QASV-THVGPIDNLVEHLSNPWHKTVIQTLASSG 265
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 181
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 28/200 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG PE L+ ++EL+H RWAML V GIL+PE L
Sbjct: 65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEIL 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+V+ W G Y P T+ +++ + +VE +R S++
Sbjct: 125 EKIGYVKNFSWYNA--GSVEYFADPT------TLFIVQLALMGWVEGRRWADIVNPGSVD 176
Query: 161 KDPE---------KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+P+ YPGG FDP+ + + P+ + KEIKNGRLA+LAF+GFC
Sbjct: 177 IEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF- 235
Query: 210 QSAYPGTGPLENLATHLADP 229
Q+ Y G P++NL HLADP
Sbjct: 236 QAVYVGGSPIDNLMAHLADP 255
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HL+DP +NN
Sbjct: 236 GKGPLENLADHLSDPVNNN 254
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHITDPVNNN 254
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 IDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 28/214 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P YLDG+ GD+GFDPL LGE PE+L Y ++EL+H R+AML V GILV + L
Sbjct: 7 WLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLL 66
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME---KDPEK 165
+ + W + + T T+++++ L + F E +R M+ +
Sbjct: 67 RVTGLSKIPVWFEAGAVKYEFTNT-------QTLIIVQLLLMGFAETKRYMDFISPGSQA 119
Query: 166 KK----------------YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
K+ YPGG +PLG +KD + E K+KEIKNGRLA++A +G V
Sbjct: 120 KEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFV 179
Query: 209 QQSAYPGTGPLENLATHLADPWHNNIGDVIIPRG 242
Q S GP++NL HL++PWH + + G
Sbjct: 180 QASV-THVGPIDNLVEHLSNPWHKTVIQTLASSG 212
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 177
Query: 158 ---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 102/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D + L PE Y+E EL+H RWAML G +PEAL
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGIN 120
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME---KD 162
G W +A GG YLG P V ++ + I+ L + VE R +
Sbjct: 121 FGESVWFKAGGQIFQEGG-LDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGGGPLGE 179
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
K YPGG+FDPLG DP E KVKEIKNGRLA+ + G+ + Q+ G GP+ENL
Sbjct: 180 AGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFI-QAIVTGKGPVENL 238
Query: 223 ATHLADPWHNN 233
HLADP+ NN
Sbjct: 239 DAHLADPFVNN 249
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 83 LSGDP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 141
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 142 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 200
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 201 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 256
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HL+DP +NN
Sbjct: 257 GKGPLENLADHLSDPVNNN 275
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP--- 163
G W +A GG YLG P V ++ I + + + VE R P
Sbjct: 93 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 151
Query: 164 -EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 152 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 210
Query: 223 ATHLADPWHNN 233
A HLADP +NN
Sbjct: 211 ADHLADPVNNN 221
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 102/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D + L PE Y+E EL+H RWAML G +PEAL
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGIN 120
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME---KD 162
G W +A GG YLG P V ++ + I+ L + VE R +
Sbjct: 121 FGESVWFKAGGQIFQEGG-LDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGGGPLGE 179
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
K YPGG+FDPLG DP E KVKEIKNGRLA+ + G+ + Q+ G GP+ENL
Sbjct: 180 AGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFI-QAIVTGKGPVENL 238
Query: 223 ATHLADPWHNN 233
HLADP+ NN
Sbjct: 239 DAHLADPFVNN 249
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSDGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 IDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 125/268 (46%), Gaps = 59/268 (22%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRL---- 74
K K + ++ P +T+ +A+ W PG PP+LDGS PGDFGFDPL L
Sbjct: 36 KLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLYNGG 95
Query: 75 ----------------------GEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
PE+L+ ++EL+HCRWAML GI +PE L
Sbjct: 96 LIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIG 155
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP- 163
+ W G Q + T T+ ++E + I + E +R + DP
Sbjct: 156 ILNTPSWYTA-GEQEYFTDT-------TTLFIVELIFIGWAEGRRWADILNPGCVNTDPI 207
Query: 164 --------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q Y
Sbjct: 208 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IY 266
Query: 214 PGTGPLENLATHLADPWHNNIGDVIIPR 241
GTGP++NL HLADP H I P+
Sbjct: 267 TGTGPIDNLFAHLADPGHATIFAAFTPK 294
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 39/247 (15%)
Query: 8 SCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
S G A T P+ SS++ P +A + W+PG PPYLDG+ GDF
Sbjct: 30 SFGAAETFLPAKPSSTRCT-------PVVVHAQQR----PTWLPGLDPPPYLDGTLAGDF 78
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQA 127
GFDPL LGE P++L+ Y ++EL+H R+AM V GIL + L + + W +
Sbjct: 79 GFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRKLPVWYEAGAVKF 138
Query: 128 TYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------------------KDPEKKKY 168
+ T T++V++ L + F E +R M+ + + Y
Sbjct: 139 EFAST-------RTLIVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLESALEGLEPGY 191
Query: 169 PGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
PGG +PLG ++D + +K+KEIKNGRLA++A VG V Q+A GP++NL HL+
Sbjct: 192 PGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFV-QAAVTHAGPIDNLIEHLS 250
Query: 228 DPWHNNI 234
+PWH I
Sbjct: 251 NPWHRTI 257
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 104/196 (53%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 41 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNG 100
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 101 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 159
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 160 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 215
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 216 PIENLFDHLADPVANN 231
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA N
Sbjct: 88 PEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 147
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L +V E + + E+ R + D E K
Sbjct: 148 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLILAVVAEVVLVGGAEYYRIINGLDLEDKL 206
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+
Sbjct: 207 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSAHLS 265
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 266 DPFGNNLLTVI 276
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPGLVHAQSILAIWACQVILMGAVEGYRIGGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 106/194 (54%), Gaps = 16/194 (8%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----M 159
G W +A GG YLG P V ++ I + + + FVE R +
Sbjct: 122 VQFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 180
Query: 160 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+D +K YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+
Sbjct: 181 GEDLDKL-YPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPV 238
Query: 220 ENLATHLADPWHNN 233
ENL H+ADP NN
Sbjct: 239 ENLVDHIADPVANN 252
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 103/190 (54%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 126 GEAVWFKAGSQIFREGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA
Sbjct: 185 VNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLA 243
Query: 224 THLADPWHNN 233
HLADP +NN
Sbjct: 244 DHLADPVNNN 253
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 112/213 (52%), Gaps = 29/213 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE+L +++L+HCRWAML GI +PE L
Sbjct: 62 WFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFL 121
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---------SM 159
+ W G+ Y T+ +IE + I + E +R +
Sbjct: 122 TKIGILNTPSWYTA--GEHQYFTDTT------TLFIIELILIGWAEGRRWADIIINPGCV 173
Query: 160 EKDP---------EKKKYPGGAF-DPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
DP ++ P G + DPLG+ + P+K +E + KEIKNGR+A+LA +G
Sbjct: 174 NTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAVMGAWF 233
Query: 209 QQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241
Q+ + GTGP++N H+ADP H I P+
Sbjct: 234 -QAEHTGTGPIDNFFAHVADPGHATIFQAFTPK 265
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE-------AL 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 IDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHITDPVNNN 254
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
+++ W G Y T+ V + + + + E +R +
Sbjct: 128 ERLGFIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIKPGSVD 179
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K P K YPGG FD + + + P+ + KEIKNGRLA+LAF+GFC
Sbjct: 180 IEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF- 238
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDV 237
Q+ Y P+ENL HLADP H N+ V
Sbjct: 239 QATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML GI+ PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEPLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---TYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSVFGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 111/200 (55%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +L G PGD+GFD LG P Y E++HCRWAMLA G+++PE L L V
Sbjct: 115 PEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGIVH 174
Query: 116 AQE-------WAAVPGGQATYLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD-- 162
E +A + G YLG + G + I + + L + E+ R +
Sbjct: 175 FVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYARYCGIEAL 234
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG SKDP FEE KVKEIKNGRLA++A++GF + Q+A
Sbjct: 235 EPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYL-QAAVT 293
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HL+DP HNNI
Sbjct: 294 GKGPVQNLVEHLSDPLHNNI 313
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + P+N RY+ ELIH RWAML G ++PEA N
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L +V E + + E+ R + D E K
Sbjct: 145 GPEAVWFKTGALLLEGNTLNYFGNSIPI-NLAVAVVAEVVLVGGAEYYRIINGLDLEGKL 203
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ +GF + Q+ G GP+ENLA HL+
Sbjct: 204 HPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFI-QAYVTGEGPVENLAKHLS 262
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 263 DPFGNNLLTVI 273
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +Y+E E+IH RWAML G L PE L
Sbjct: 36 PSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGALGCLTPELLAKNGVSF 95
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM---EKDP 163
G W +A PGG YLG P V ++ IL + L + +E R +
Sbjct: 96 GEAVWWKAGAQIFAPGG-LDYLGNPSLVHAQSIIAILASQVLLMGAIEGYRVYGGPGGEG 154
Query: 164 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
K YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 155 LDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENL 213
Query: 223 ATHLADPWHNN 233
+HLADP NN
Sbjct: 214 ESHLADPSVNN 224
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEVVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
+++ W G Y T+ V + + + + E +R +
Sbjct: 128 ERLGFIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIKPGSVD 179
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K P K YPGG FD + + + P+ + KEIKNGRLA+LAF+GFC
Sbjct: 180 IEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF- 238
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y P+ENL HLADP H N+
Sbjct: 239 QATYTSQDPIENLMAHLADPGHCNV 263
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHIVDPVNNN 254
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS PGDFGFDPL LG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
+++ W G Y T+ V + + + + E +R +
Sbjct: 128 ERLGFIENFSW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIKPGSVD 179
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K P K YPGG FD + + + P+ + KEIKNGRLA+LAF+GFC
Sbjct: 180 IEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF- 238
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y P+ENL HLADP H N+
Sbjct: 239 QATYTSQDPIENLMAHLADPGHCNV 263
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 111/205 (54%), Gaps = 27/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA GILVP+ L
Sbjct: 68 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
++ A ++ G Y P T+ V + + + E +R +
Sbjct: 128 ARWGFIDAG-FSWFDAGSREYFADPW------TLFVSQMALMGWAEGRRWADYLRPGCVD 180
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 181 IEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 239
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL HLADP H NI
Sbjct: 240 QAVYTGQGPIDNLLAHLADPGHCNI 264
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P + ++ I + + + VE R +
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR-IAGG 177
Query: 163 PEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P K YPGG+FDPLG + DP+ F E KVKEIKNGR A+ + GF V Q+ G GP
Sbjct: 178 PLGKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSAMFSMFGFFV-QAIVTGKGP 236
Query: 219 LENLATHLADPWHNN 233
LENLA HLADP +NN
Sbjct: 237 LENLADHLADPVNNN 251
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 24 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 83
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + L + VE R
Sbjct: 84 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVAGGPLGEV 142
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 143 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 198
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 199 NLADHLADPVNNN 211
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS P DFGFDPL LG PE L+ + +SE++H RWAML GI +PEAL
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEAL 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G+ Y T+ ++E + + + E +R S+
Sbjct: 126 TKLGILNTPFW--YTAGEQEYFTDQT------TLFIVEMILLGWAEGRRWADILKPGSVN 177
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDP G+ + P+K +E + KEIKNGRLA+LA +G
Sbjct: 178 TDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWF- 236
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G P++NL HLADP H I
Sbjct: 237 QAVYTGARPIDNLLAHLADPGHATI 261
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ + + + + +E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 241 NLFDHVADPVANN 253
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFNEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENL H+ DP +NN
Sbjct: 236 GKGPLENLGDHITDPVNNN 254
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 83
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L + E + + E+ R + D E K
Sbjct: 84 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLDLEDKL 142
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+
Sbjct: 143 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLS 201
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 202 DPFGNNLLTVI 212
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 47/245 (19%)
Query: 31 VSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
VS T A A W+PG P +LDGS PGDFGFDPL LG PE L + ESE +
Sbjct: 24 VSRARPVRQTVVRAERALWLPGGDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAESERV 83
Query: 91 HCRWAMLAVPGILVPEALGLGN-WVQAQEWAAVPGGQATYLGTPVPWGTLPT----ILVI 145
H RWAMLAV GI V E + W +A L +P+P+G P ++
Sbjct: 84 HARWAMLAVAGIAVQEVVRPDVFWYEAA------------LKSPMPFGNSPAAILGLVAF 131
Query: 146 EFLSIAFVEHQR--------SMEKDP---------EKKKYPGGAFDPLGFSKDPQKFEEY 188
E ++ FVE +R S ++DP + YPGG F P+ P E
Sbjct: 132 ELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNKLPKHEVGYPGGIFAPV----IPGDLAEL 187
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI--------GDVIIP 240
K+KEIKNGRLA+LAF GF V Q+ G GPL +L HL++P I G I+P
Sbjct: 188 KLKEIKNGRLAMLAFAGF-VMQAQVTGKGPLASLGDHLSNPIGTTIFSKAVVIPGQAIVP 246
Query: 241 RGIVP 245
++P
Sbjct: 247 PCMIP 251
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 234 GKGPLENLADHIADPVNNN 252
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 50 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 109
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 110 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 168
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 169 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 224
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 225 NLADHLADPVNNN 237
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HLADP NN
Sbjct: 242 NLADHLADPVANN 254
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RWAML G ++PEA N
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L + E + + E+ R + D E K
Sbjct: 63 GPEAVWFKTGALLLDGNTLNYFGNSIPI-NLIVAVAAEVVLVGGAEYYRIINGLDLEDKL 121
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+PGG FDPLG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+
Sbjct: 122 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLS 180
Query: 228 DPWHNNIGDVI 238
DP+ NN+ VI
Sbjct: 181 DPFGNNLLTVI 191
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E ELIH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGGAFDPLG + DP+ F E KVKEIK GRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVK IKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +LDGS P DFGFDPL LG PE L+ + +SE++H RWAML GI +PEAL
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEAL 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W G+ Y T+ ++E + + + E +R S+
Sbjct: 126 TKLGILNTPFWYTA--GEQEYFTDQT------TLFIVEMILLGWAEGRRWADILKPGSVN 177
Query: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG FDP G+ + P+K +E + KEIKNGRLA+LA +G
Sbjct: 178 TDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWF- 236
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G P++NL HLADP H I
Sbjct: 237 QAVYTGARPIDNLLAHLADPGHATI 261
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA---LGLGN 112
P YL G PGD+GFD LG+ P L++Y E++H RWAMLA G L+PE LG +
Sbjct: 122 PSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFH 181
Query: 113 WVQAQEW----AAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
+V+ W + + G YLG + + ++VI + E+ R +
Sbjct: 182 FVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEAL 241
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPL S DP+ FEE KVKEIKNGRLA++A++GF V Q+A
Sbjct: 242 EPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYV-QAALT 300
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL H++DP+HNN+
Sbjct: 301 GKGPVQNLIDHISDPFHNNL 320
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +R++ E+IH RWAML G + PE L
Sbjct: 54 PAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVE 113
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP-- 163
G W +A GG YLG P V ++ LV++ L + VE R+ + P
Sbjct: 114 FGEAVWFKAGAQIFADGG-LNYLGNPGLVHAQSIVATLVVQVLLMGAVEIYRANGEGPSG 172
Query: 164 ----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGGAFDPLG + DP E KVKE+KNGRLA+++ +GF V Q+ G GPL
Sbjct: 173 FGEGQDNLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAMMSMLGFFV-QAIVTGKGPL 231
Query: 220 ENLATHLADPWHNNI 234
+NL THL +P N
Sbjct: 232 DNLLTHLEEPGEFNF 246
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGQP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 177
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GP+ENLA HLADP +NN
Sbjct: 234 GKGPVENLADHLADPVNNN 252
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 115
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 116 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 174
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 175 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 231 GKGPLENLADHLADPVNNN 249
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E ELIH RWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 72 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 130
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 190 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 245
Query: 217 GPLENLATHLADPWHNN 233
GP+ENL HLADP +NN
Sbjct: 246 GPIENLTDHLADPVNNN 262
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEG 184
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 185 LDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 241 NLFDHLADPVANN 253
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE-------AL 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W++A GG YLG P V ++ I + L + VE R +
Sbjct: 128 GEAVWLKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE KNGRLA+ + GF + Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFI-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HL DP +NN
Sbjct: 243 NLADHLVDPVNNN 255
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 104/196 (53%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL H+ADP NN
Sbjct: 238 PIENLFDHVADPVANN 253
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 55 LSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 113
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 114 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 172
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 173 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 228
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 229 GKGPLENLADHIADPVNNN 247
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 102/192 (53%), Gaps = 15/192 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P YL G PGD+G+D L PE RY+E E+IH RWAML G L PE L G +
Sbjct: 49 PSYLKGEFPGDYGWDSAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAAD 108
Query: 113 WVQAQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
+ +A W + YLG P + ++ +L+ + + + E R + P +
Sbjct: 109 FGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYAGEGPVE 168
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G PLEN
Sbjct: 169 TSGDSLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFV-QALITGKSPLEN 227
Query: 222 LATHLADPWHNN 233
LA HLADP N
Sbjct: 228 LADHLADPSTAN 239
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NL HLADP +NN
Sbjct: 243 NLVDHLADPVNNN 255
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 93
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 94 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 152
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 153 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 208
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 209 NLADHLADPVNNN 221
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 PSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 103/190 (54%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 33 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 93 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
E YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V + G GPLENLA
Sbjct: 152 EDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-XAIVTGKGPLENLA 210
Query: 224 THLADPWHNN 233
HLADP +NN
Sbjct: 211 DHLADPVNNN 220
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNW-- 113
P YL G PGD+G+D L P + Y+E+E+IH RWAML G + PE L +
Sbjct: 106 PAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALGCIFPELLNSAGFNL 165
Query: 114 -VQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKK 167
V + + YLG P V + +L ++ + + E R +P
Sbjct: 166 PVWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEAYRFNGGPLGEPADVL 225
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGGAFDPLGF+KDP K E KVKEIKNGRLA+ A +G+ VQ A G GP+ENL+ HLA
Sbjct: 226 YPGGAFDPLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYYVQALA-TGKGPIENLSEHLA 284
Query: 228 DPWHNN 233
DP NN
Sbjct: 285 DPSKNN 290
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 111/219 (50%), Gaps = 32/219 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-GLGNWV 114
P YL+G GD+G+DPL LG+ E + +Y+E EL+H RWAMLA GIL+PE L G +
Sbjct: 69 PAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQANGANI 128
Query: 115 QAQEW-----AAVPGGQATYLGTPVPWGTLPT------ILVIEFLSIAFVEHQRSMEKDP 163
+ W + GG Y VPWG + ++ IE + VE R P
Sbjct: 129 KGGVWFETGAEMLNGGTLNYF--AVPWGIVSNPLPLFAVIAIEVGLMGAVEFYRRNGTGP 186
Query: 164 E-----------------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
YPGG FDPLG + DP+ F+E KVKEIKNGRLA+++ + F
Sbjct: 187 AGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQELKVKEIKNGRLAMVSVLAF 246
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 245
+ QS G GP N H+ DP+ N+ V+ VP
Sbjct: 247 AI-QSYVTGEGPYTNWIKHVQDPFGYNLLTVLGNEDRVP 284
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 239 NLFDHVADPVANN 251
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 101/190 (53%), Gaps = 13/190 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-----L 110
P YL+G PGD+G+D L PE RY+E E+IH RWAML G + PE L
Sbjct: 52 PSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSF 111
Query: 111 GNWVQAQEWAAVPGGQA-TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE--- 164
G V + A + G YLG V ++ L + + + E R+ + P
Sbjct: 112 GEAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAAGEGPGLEG 171
Query: 165 -KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 172 LDSLYPGGPFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 230
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 231 DHLADPGVNN 240
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 28/205 (13%)
Query: 57 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-GNWVQ 115
P L+G+ PGD+G+DPL L + E L +Y+ +EL+H RWAMLA G ++PE L G V+
Sbjct: 69 PLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLAAAGAIIPEGLAANGADVK 128
Query: 116 AQEW-----AAVPGGQATYLGTPVPWGTLPT-ILVIEFLSIAFV----EHQRSMEK---- 161
W A + GG + P+ + P + V+ ++A + ++R+ E
Sbjct: 129 GATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVALMGAAENYRRTGEGPAGY 188
Query: 162 ------------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
D YPGG FDPLG + DP+ E KVKEIKNGRLA+++F+GF V
Sbjct: 189 SPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAELKVKEIKNGRLAMVSFLGFAV- 247
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+A G GP N + H+ADP+ N+
Sbjct: 248 QAAVTGEGPYANWSKHVADPFGYNL 272
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 104/196 (53%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 122 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFIEGYRVGGGPL 180
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 181 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 236
Query: 218 PLENLATHLADPWHNN 233
PLENL+ HLADP NN
Sbjct: 237 PLENLSDHLADPVANN 252
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 111/205 (54%), Gaps = 27/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA GILVP+ L
Sbjct: 68 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLL 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
++ A ++ G Y P T+ V + + + E +R +
Sbjct: 128 ARWGFIDAG-FSWFDAGSREYFADPW------TLFVSQMALMGWAEGRRWADYLRPGCVD 180
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P ++ YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 181 IEPRFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 239
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL HLADP H NI
Sbjct: 240 QAVYTGQGPIDNLLAHLADPGHCNI 264
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 151
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 104/203 (51%), Gaps = 27/203 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P +L G PGD+GFDPL LG+ P++LE Y ++EL H RWAML V G PE L
Sbjct: 36 WFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEIL 95
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
W P Q + T+ ++ L + + E +R S+
Sbjct: 96 TKMGISDLPNWHDAPNYQGYFTDA-------TTLFWVQMLMMNWAEVRRWQDMRKPGSVN 148
Query: 161 KDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP YPGG FDPLG++K + K KEI NGRLA++AF G VQ
Sbjct: 149 EDPAFSGNKLPSGIVGYPGGIFDPLGYAKG--DLNKLKAKEIANGRLAMVAFAGIMVQYD 206
Query: 212 AYPGTGPLENLATHLADPWHNNI 234
+ G GP+ NL H++DP HNN+
Sbjct: 207 -HTGVGPVANLVAHMSDPAHNNV 228
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E ELIH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ DP NN
Sbjct: 239 NLFDHVTDPVANN 251
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 111/205 (54%), Gaps = 27/205 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG PP+LDGS PGDFGFDPL LG PE L + ++EL+H RWAMLA GILVP+ L
Sbjct: 29 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLL 88
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-------- 160
++ A ++ G Y P T+ V + + + E +R +
Sbjct: 89 ARWGFIDAG-FSWFDAGSREYFADPW------TLFVSQMALMGWAEGRRWADYLRPGCVD 141
Query: 161 ---KDPEKKK------YPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ P +K YPGG FD + + P+ + KEIKNGRLA+LAFVGF
Sbjct: 142 IEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 200
Query: 210 QSAYPGTGPLENLATHLADPWHNNI 234
Q+ Y G GP++NL HLADP H NI
Sbjct: 201 QAVYTGQGPIDNLLAHLADPGHCNI 225
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 119/219 (54%), Gaps = 32/219 (14%)
Query: 37 ANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 91
A A +K+ +SA W PG +LDGS PGDFG+DPL L P+ L+ ++EL +
Sbjct: 25 AKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQN 84
Query: 92 CRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIA 151
RWAML V G+L + L N V AAV +A + W TL LV++ + A
Sbjct: 85 ARWAMLGVAGMLGAD---LANKVGLP--AAVQWYEAPLVDYQADWKTL---LVVQLVLHA 136
Query: 152 FVEHQR--------SMEKDP--------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKN 195
+VE +R S DP YPGG FDPLGFSK E K+KEIKN
Sbjct: 137 WVEGRRWADFHSPGSANADPFGNSLPSTATTGYPGGPFDPLGFSKG--NLPELKLKEIKN 194
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GRLA++A +G VQ SA G PL+NLA HLADP H NI
Sbjct: 195 GRLAMVASLGLFVQYSA-TGASPLDNLAAHLADPGHANI 232
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G L PE L
Sbjct: 64 EGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLYDHLADPVANN 254
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGPADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 119/219 (54%), Gaps = 32/219 (14%)
Query: 37 ANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 91
A A +K+ +SA W PG +LDGS PGDFG+DPL L P+ L+ ++EL +
Sbjct: 21 AKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQN 80
Query: 92 CRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIA 151
RWAML V G+L + L N V AAV +A + W TL LV++ + A
Sbjct: 81 ARWAMLGVAGMLGAD---LANKVGLP--AAVQWYEAPLVDYQADWKTL---LVVQLVLHA 132
Query: 152 FVEHQR--------SMEKDP--------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKN 195
+VE +R S DP YPGG FDPLGFSK E K+KEIKN
Sbjct: 133 WVEGRRWADFHSPGSANADPFGNSLPSTATTGYPGGPFDPLGFSKG--NLPELKLKEIKN 190
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GRLA++A +G VQ SA G PL+NLA HLADP H NI
Sbjct: 191 GRLAMVASLGLFVQYSA-TGASPLDNLAAHLADPGHANI 228
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL+G PGD+G+D L PE RY+E E+IH RWAML GI+VPE L N
Sbjct: 82 PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALGIVVPELLDQTNHVA 141
Query: 113 WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM---EKDPEKKK 167
W A P G YLG P + + + ++ + + +E R + K
Sbjct: 142 WFDAGATIFGPKG-IQYLGVPGLINAKNIIATVAVQVILMGAIEGYRVNGGPAGEGLDKV 200
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ NL HLA
Sbjct: 201 YPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSNFGFFV-QAIVTGKGPIANLNDHLA 259
Query: 228 DPWHNN 233
+P NN
Sbjct: 260 NPTVNN 265
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 128/268 (47%), Gaps = 46/268 (17%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP--- 51
+ SCGI + AF +SS K + + A + AT K ++SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
GEP P YL G PGD+G+D L PE + +E E+IH RWAML
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 GILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 151
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMG 178
Query: 152 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNN 233
F V Q+ G GP+ENLA HLADP NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVSNN 262
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+K GRLA+L+ GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 235 GKGPLENLADHIADPVNNN 253
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 114/218 (52%), Gaps = 36/218 (16%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A + SK + W+PG P +L G PGDFGFDPL LG E+L+ +KESEL+HCRW
Sbjct: 18 ARRSVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVHCRW 77
Query: 95 AMLAVPGILVPEALGLGN-WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFV 153
AM AV GILV E + W A + P G P G +L +EF + +V
Sbjct: 78 AMAAVAGILVQEIVRPDVFWYNAGKEVESPLG---------PLG----LLAVEFFLMHWV 124
Query: 154 EHQR--------SMEKDP---------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNG 196
E +R S+++DP + YPGG F P P E KVKEIKNG
Sbjct: 125 ELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGGVFAPF----IPGDLAELKVKEIKNG 180
Query: 197 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
RLA+LAFVGF V + G GP+ L HLADP+ I
Sbjct: 181 RLAMLAFVGF-VMAAQVTGKGPIAALQEHLADPFGTTI 217
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KN RLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNSRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NLA H+ADP +NN
Sbjct: 239 NLADHVADPVNNN 251
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 17 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 76
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 77 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 135
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 136 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 194
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 195 NLFDHVADPVANN 207
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGQP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ DP +NN
Sbjct: 236 GKGPLENLADHITDPVNNN 254
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL+G PGD+G+D L PE RY+E E+IH RWAML G L PE L N
Sbjct: 12 PSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQ-NGFT 70
Query: 116 AQE---WAAVPGGQA------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 164
QE W A G Q YLG P V ++ L ++ + + E R+ P
Sbjct: 71 FQEPVWWKA--GAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAGSAPG 128
Query: 165 ----KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K YPGG FDPL F+ DP E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 129 VDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 187
Query: 221 NLATHLADPWHNN 233
NL HLA P+ NN
Sbjct: 188 NLNDHLASPYANN 200
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 128
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 129 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDV 187
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 188 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 246
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 247 DHLADPVANN 256
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GP+ENLA HL DP +NN
Sbjct: 234 GKGPIENLADHLTDPVNNN 252
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 106/199 (53%), Gaps = 20/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 58 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLA 117
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 118 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 176
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 177 GPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 232
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 233 GKGPLENLADHLADPVNNN 251
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 103/195 (52%), Gaps = 21/195 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L P+ RY+E ELIH RWA+L GIL PE L VQ
Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQ 110
Query: 116 ----------AQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
AQ +AA G YLG + ++ L ++ + + E R+
Sbjct: 111 FGEPVWFKAGAQIFAA---GGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSE 167
Query: 162 ---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP
Sbjct: 168 GFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTGKGP 226
Query: 219 LENLATHLADPWHNN 233
++NL HLADP NN
Sbjct: 227 VQNLTDHLADPTVNN 241
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 105/190 (55%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V ++ I ++ + + VE R P +
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPPGEV 184
Query: 167 K---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENLA
Sbjct: 185 VDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLA 243
Query: 224 THLADPWHNN 233
HLADP +NN
Sbjct: 244 DHLADPVNNN 253
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE-------AL 108
P YL G P D+G+D L PE + +E E+IHCRWAML G + PE
Sbjct: 68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 IDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 67 PSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEI 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG FDPLG ++ PQ F+ KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGRFDPLGLAERPQAFDALKVKEIKNGRLAMFSMFGFLV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA H+ADP +NN
Sbjct: 242 NLADHIADPVNNN 254
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 128 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPL+
Sbjct: 187 TDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLD 242
Query: 221 NLATHLADPWHNN 233
NL HLADP +NN
Sbjct: 243 NLVDHLADPVNNN 255
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 127/268 (47%), Gaps = 46/268 (17%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP--- 51
+ SCGI + AF +SS K + + A + T K + SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL 119
Query: 101 GILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 151
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 152 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRL + + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLTMFSMFG 235
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNN 233
F V Q+ G GP+E+LA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIEDLADHLADPVNNN 262
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 181
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 118
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 177
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 234 GPLENLADHLADPVNNN 250
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 184
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 124/268 (46%), Gaps = 41/268 (15%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANAT------SKYAMSADWMP--- 51
MAS + SCG A S+ + + A T K ++SA P
Sbjct: 1 MASCGIGSCGFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
GEP P YL G PGD+G+D L PE + +E E+IH RWAML
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 GILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 151
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 152 FVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNN 233
F V Q+ G GP+ENLA HLADP NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVSNN 262
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 101/190 (53%), Gaps = 13/190 (6%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-----L 110
P YL G PGD+G+D L PE RY+E E+IH RWAML G + PE L
Sbjct: 47 PSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSF 106
Query: 111 GNWVQAQEWAAVPGGQA-TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 167
G V + A + G YLG P V ++ L + + + E R+ + P +
Sbjct: 107 GEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYRANGEGPGVEG 166
Query: 168 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG FDPLG + DP F E K KEIKNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 167 LDSLYPGGPFDPLGLADDPDTFAELKTKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 225
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 226 DHLADPGVNN 235
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E ELIH RWAML G + PE L
Sbjct: 29 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 87
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 88 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 146
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 147 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 202
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 203 GKGPLENLADHLADPVNNN 221
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 183
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 TDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFV-QAIVTGKGPLE 239
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 67 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 127 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDV 185
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 186 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 244
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 245 DHLADPVANN 254
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 105/195 (53%), Gaps = 17/195 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 54 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKS 112
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
G W +A GG YLG P V + L ++ + + VE R +
Sbjct: 113 GTQFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR-VNGG 170
Query: 163 PEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 171 PAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 229
Query: 219 LENLATHLADPWHNN 233
++NL HL++P NN
Sbjct: 230 IQNLDDHLSNPTVNN 244
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 35 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 93
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 94 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 152
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 153 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 208
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 209 GPLENLADHLADPVNNN 225
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P +Y+E+ELIH RWAML G++ PEAL
Sbjct: 157 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 216
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----MEKD 162
W +A GG YLG V ++ IL + + + E R + +D
Sbjct: 217 AEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGED 275
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN
Sbjct: 276 SDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENW 333
Query: 223 ATHLADPWHNN 233
A H+ADP++ N
Sbjct: 334 AAHVADPFNVN 344
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P +Y+E+ELIH RWAML G++ PEAL
Sbjct: 397 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 456
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----MEKD 162
W +A GG YLG V ++ IL + + + E R + +D
Sbjct: 457 AEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGED 515
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN
Sbjct: 516 SDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENW 573
Query: 223 ATHLADPWHNN 233
A H+ADP++ N
Sbjct: 574 AAHVADPFNVN 584
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN A H+A
Sbjct: 40 YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENWAAHVA 98
Query: 228 DPWHNN 233
DP++ N
Sbjct: 99 DPFNVN 104
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 35 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 93
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 94 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 152
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 153 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 208
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 209 GPLENLADHLADPVNNN 225
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 119/241 (49%), Gaps = 49/241 (20%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDP 71
A A PS S+ +S A S P W+PG P +L G PGDFGFDP
Sbjct: 8 AVAARPSARSARRSVVAKASSRPL-------------WLPGSTPPAHLKGDLPGDFGFDP 54
Query: 72 LRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN-WVQAQEWAAVPGGQATYL 130
L LG E+L+ +KESEL+H RWAM AV GILV E + W A + P G
Sbjct: 55 LGLGANAESLKWFKESELVHSRWAMAAVAGILVQEIVRPDVFWYNAGKEVESPLG----- 109
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD---------PEKKKYPGGAF 173
P G +L +EF + +VE +R S+++D P + YPGG F
Sbjct: 110 ----PLG----LLAVEFFLMHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYPGGVF 161
Query: 174 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
P P E KVKEIKNGRLA+LAFVGF V + G GP+ L HLADPW
Sbjct: 162 APF----IPGDLAELKVKEIKNGRLAMLAFVGF-VMAAQVTGKGPIAALQEHLADPWGTT 216
Query: 234 I 234
I
Sbjct: 217 I 217
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P V ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +L G APGD+GFD L L P ERY E++H RWAMLA G+++PE L VQ
Sbjct: 143 PDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGGVQ 202
Query: 116 AQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
E +A + G YLG P + ILVI F + + E+ R +
Sbjct: 203 FSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYCGIEAL 262
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPLG +KD FE+ KVKE+KNGRLA++A++GF V Q+
Sbjct: 263 EPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYV-QALVT 321
Query: 215 GTGPLENLATHLADPWHNNI 234
GP++NL L DP H N+
Sbjct: 322 QKGPIDNLFDFLEDPLHQNL 341
>gi|116783401|gb|ABK22927.1| unknown [Picea sitchensis]
Length = 126
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAV-SLPAAANATSKYAMSADWMPGEPRPPYL 59
MA+ S +A F SS+KS+FF+ SL S+ +MSA+WMPG+PRPP+L
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSMSAEWMPGQPRPPHL 60
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
DGSAPGDFGFDPLRLG VPENLERYKESELIHCRWAMLAV
Sbjct: 61 DGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAV 100
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 122 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRVGGGPL 180
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 221 NLATHLADPWHNN 233
NL HLAD NN
Sbjct: 240 NLFDHLADLAANN 252
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 181
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDV 186
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 187 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 245
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 246 DHLADPVANN 255
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 181
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 113/217 (52%), Gaps = 34/217 (15%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
A + +K + W+PG P +L G PGDFGFDPL LG P++L+ ++ESEL+H RW
Sbjct: 17 ARRSVVAKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRW 76
Query: 95 AMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE 154
AM AV GILV E V+ + G Q P G L +L EF + +VE
Sbjct: 77 AMAAVAGILVQEI------VRPDVFWYSAGSQVES-----PLGPL-GLLAFEFFCMHWVE 124
Query: 155 HQR--------SMEKD---------PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGR 197
+R S+++D P + YPGG F P P E KVKEIKNGR
Sbjct: 125 LRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGGVFAPF----IPGDLAELKVKEIKNGR 180
Query: 198 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
LA+LAFVGF V + G GP+ L HLADPW I
Sbjct: 181 LAMLAFVGF-VMAAQVTGKGPIAALQEHLADPWGTTI 216
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 113
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L ++ + + +E R + P +
Sbjct: 114 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNGGPAGE 171
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 172 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPVQNL 230
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 231 DDHLANPTVNN 241
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 128/268 (47%), Gaps = 46/268 (17%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP--- 51
+ SCGI + AF +SS K V + A + +T K + SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
GEP P YL G PGD+G+D L PE + +E E+IH RWAML
Sbjct: 61 PDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 GILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 151
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 152 FVEHQRSME------KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
VE R DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNN 233
F V Q+ G GP+ENLA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVNNN 262
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 181
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAEXKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 211 GPLENLADHLADPVNNN 227
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 122 VKFGEAVWFKAGSQIFQEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 180
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 221 NLATHLADPWHNN 233
NL+ HLADP NN
Sbjct: 240 NLSDHLADPVANN 252
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P + ++ IL + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLIHAQSILAILACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E ELIH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVRGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ DP NN
Sbjct: 239 NLFDHVTDPVANN 251
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTKF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L ++ + + +E R + P +
Sbjct: 115 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPVQNL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 DDHLANPTVNN 242
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L P+ RY+E ELIH RWA+L GIL PE L
Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQ 110
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG + ++ L ++ + + E R+
Sbjct: 111 FGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGF 169
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP++
Sbjct: 170 LDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTGKGPVQ 228
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 229 NLTDHLADPTVNN 241
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 123
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 182
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 183 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P +Y+E+ELIH RWAML G++ PEAL
Sbjct: 140 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 199
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----MEKD 162
W +A GG YLG V ++ IL + + + E R + +D
Sbjct: 200 AEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGED 258
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN
Sbjct: 259 SDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENW 316
Query: 223 ATHLADPWHNN 233
A H+ADP++ N
Sbjct: 317 AAHVADPFNVN 327
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P +Y+E+ELIH RWAML G++ PEAL
Sbjct: 380 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 439
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----MEKD 162
W +A GG YLG V ++ IL + + + E R + +D
Sbjct: 440 AEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGED 498
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN
Sbjct: 499 SDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENW 556
Query: 223 ATHLADPWHNN 233
A H+ADP++ N
Sbjct: 557 AAHVADPFNVN 567
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P +Y+E+ELIH RWAML G++ PEAL
Sbjct: 620 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 679
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS----MEKD 162
W +A GG YLG V ++ IL + + + E R + +D
Sbjct: 680 AEPVWFKAGAQIFSEGGL-DYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGED 738
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN
Sbjct: 739 SDAL-YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENW 796
Query: 223 ATHLADPWHNN 233
A H+ADP++ N
Sbjct: 797 AAHVADPFNVN 807
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ A GF V Q+ G GP+EN A H+A
Sbjct: 23 YPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYV-QALVTGEGPVENWAAHVA 81
Query: 228 DPWHNN 233
DP++ N
Sbjct: 82 DPFNVN 87
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YP GAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 239 NLFDHVADPVANN 251
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L ++ + + +E R + P +
Sbjct: 115 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPVQNL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 DDHLANPGVNN 242
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWA+L G + PE L
Sbjct: 68 PSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W + GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKVGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV 186
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 108/203 (53%), Gaps = 19/203 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L+RY+E+ELIH RWAML G +PE L VQ
Sbjct: 486 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 545
Query: 116 AQE--WAAVPGGQA------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
E W G Q Y G P + +L IL + L + VE R+ P +
Sbjct: 546 FGEPIWFKA-GAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 604
Query: 166 ------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKEIKNGRLA++A +GF Q+ G GP+
Sbjct: 605 FGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMMAMLGFYA-QAIVTGEGPV 663
Query: 220 ENLATHLADP-WHNNIGDVIIPR 241
EN HL DP HN + ++ +
Sbjct: 664 ENWLYHLQDPSAHNGLTAALVTQ 686
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 108/203 (53%), Gaps = 19/203 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L+RY+E+ELIH RWAML G +PE L VQ
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 116 AQE--WAAVPGGQA------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
E W G Q Y G P + +L IL + L + VE R+ P +
Sbjct: 62 FGEPIWFKA-GAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 166 ------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKEIKNGRLA++A +GF Q+ G GP+
Sbjct: 121 FGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYA-QAIVTGEGPV 179
Query: 220 ENLATHLADP-WHNNIGDVIIPR 241
EN HL DP HN + ++ +
Sbjct: 180 ENWLYHLQDPSAHNGLTAALVTQ 202
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 104/194 (53%), Gaps = 19/194 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG---- 111
PPYL+G PGD+G+D LG P L+RY+E+ELIH RWAML G++ PE L
Sbjct: 243 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 302
Query: 112 ----NWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS------M 159
W +A GG YLG V ++ IL + L + E R+
Sbjct: 303 IAEPVWFKAGAQIFSEGG-LDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNF 361
Query: 160 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
KD + YPGG FDPLG + DP E KVKEIKNGRLA+ A GF V Q+ G PL
Sbjct: 362 GKDLD-SLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYV-QAIVTGESPL 419
Query: 220 ENLATHLADPWHNN 233
ENL+ HLA P+ N
Sbjct: 420 ENLSAHLASPFTVN 433
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 105/192 (54%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE ++Y+E E+IH RWA+L GIL PE L
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVK 115
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG+P + + L ++ + + +E R + P
Sbjct: 116 FGEPVWFKAGAQIFSEGGL-DYLGSPALIHAQNIVATLAVQVVLMGLIEGYR-VNGGPAG 173
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++N
Sbjct: 174 EGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV-QAIVTGKGPIQN 232
Query: 222 LATHLADPWHNN 233
LA HLADP NN
Sbjct: 233 LADHLADPGTNN 244
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 115 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 NDHLANPAVNN 242
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL + DP NN
Sbjct: 241 NLFDQINDPVANN 253
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 136/277 (49%), Gaps = 52/277 (18%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD------------ 48
MA+ L+S T A +V S F A SLP++ ++ K +
Sbjct: 283 MATQVLLSSSSLTFAAEAVRQS-----FGARSLPSSIGSSRKGSFVVKAAAPVKKGGANR 337
Query: 49 --WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVP 100
W + YLDGS PGDFGFDPL L + PE + + E E+I+ R+AML
Sbjct: 338 QLWFASKQSLSYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAA 396
Query: 101 GILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR 157
G + PE LG + A+ A+P Q + GT W T+ V+E + F EH+R
Sbjct: 397 GAIAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRR 454
Query: 158 --------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGR 197
SM K + YPGG F+PLGF KD + +E K+KE+KNGR
Sbjct: 455 LQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 514
Query: 198 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
LA+LA +G+ + Q+ G GP +NL HLADP +NNI
Sbjct: 515 LAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNNI 550
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 127/256 (49%), Gaps = 40/256 (15%)
Query: 11 IATTAFPSVLSSSKSKFFT---AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
+ PS + SS+ F A S P N ++ W + YLDGS PGDF
Sbjct: 23 FGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQL----WFASKQSLSYLDGSLPGDF 78
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
GFDPL L + PE + E E+I+ R+AML G + PE LG + A+ A
Sbjct: 79 GFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAE--TA 135
Query: 122 VPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-------- 162
+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 136 LPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKG 195
Query: 163 ---PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+ G GP
Sbjct: 196 LGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALVTGVGP 254
Query: 219 LENLATHLADPWHNNI 234
+NL HLADP +NNI
Sbjct: 255 YQNLLDHLADPVNNNI 270
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 122 VQFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPL 180
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 181 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 236
Query: 218 PLENLATHLADPWHNN 233
P+ENLA H+ADP NN
Sbjct: 237 PIENLADHIADPVANN 252
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGXVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEITDP---IYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 115 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 NDHLANPAVNN 242
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 102/190 (53%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E ELIH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 127 GEAVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEV 185
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 186 EDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 244
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 245 DHLADPTVNN 254
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 104/204 (50%), Gaps = 28/204 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
WMPG P +L PGD+GFDPL LG+ PE+L+ Y ++EL H RWAML V G PE L
Sbjct: 2 WMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEIL 61
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
W P + T+ ++ L + + E +R S+
Sbjct: 62 TNMGISNLPNWHEAPSYDGYFTDA-------TTLFWVQMLMMNWAEVRRWQDIRKPGSVS 114
Query: 161 KDPEKKK----------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
+DP YPGG FDPLG++K K K KEI NGRLA++AF G VQ
Sbjct: 115 EDPTPFSNAKLPAGVVGYPGGIFDPLGYAKGDLK--TLKAKEIANGRLAMVAFAGIMVQY 172
Query: 211 SAYPGTGPLENLATHLADPWHNNI 234
+ G GP+ NL +H+ADP HNN+
Sbjct: 173 D-HTGVGPVANLVSHMADPAHNNV 195
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLYDHLADPTANN 254
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKF 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEV 183
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 TDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 239
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 115 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 NDHLANPAVNN 242
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGP 181
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HL+DP +NN
Sbjct: 238 GPLENLADHLSDPVNNN 254
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 65 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 123
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 182
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 183 LGEITDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 238
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 239 GPLENLADHLADPVNNN 255
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + +GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P V ++ I ++ + + F+E R
Sbjct: 122 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGGGPL 180
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 181 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 236
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 237 PVENLYDHLADPATNN 252
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 117
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L ++ + + VE R + P +
Sbjct: 118 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR-VNGGPAGE 175
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 176 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQNL 234
Query: 223 ATHLADPWHNN 233
HL++P NN
Sbjct: 235 DDHLSNPTVNN 245
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 104/191 (54%), Gaps = 14/191 (7%)
Query: 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------ 108
+P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 78 QPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVK 137
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---D 162
G W +A GG YLG+P V ++ IL + + + +E R +
Sbjct: 138 FGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGE 196
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPGG FDPLG++ DP F E KVKE+KNGRLA+ + GF V Q+ G GPLENL
Sbjct: 197 VTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENL 255
Query: 223 ATHLADPWHNN 233
A HLADP +NN
Sbjct: 256 ADHLADPVNNN 266
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 53 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 111
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 112 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 170
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 171 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 226
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 227 GPLENLADHLADPVNNN 243
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILARNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 241 NLYDHLADPVANN 253
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE R +E E+IH RWAML GI+ PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEG 184
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP++
Sbjct: 185 LDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFV-QAIVTGKGPIQ 240
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 241 NLYDHVADPVANN 253
>gi|75755985|gb|ABA27047.1| TO75-2 [Taraxacum officinale]
Length = 67
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/66 (90%), Positives = 62/66 (93%)
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
DP+ F EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII
Sbjct: 1 NDPKTFAEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 60
Query: 240 PRGIVP 245
P+GI P
Sbjct: 61 PKGIFP 66
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 136/277 (49%), Gaps = 52/277 (18%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD------------ 48
MA+ L+S T A +V S F A SLP++ ++ K +
Sbjct: 299 MATQVLLSSSSLTFAAEAVRQS-----FGARSLPSSIGSSRKGSFVVKAAAPVKKGGANR 353
Query: 49 --WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVP 100
W + YLDGS PGDFGFDPL L + PE + + E E+I+ R+AML
Sbjct: 354 QLWFASKQSLSYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAA 412
Query: 101 GILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR 157
G + PE LG + A+ A+P Q + GT W T+ V+E + F EH+R
Sbjct: 413 GAIAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRR 470
Query: 158 --------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGR 197
SM K + YPGG F+PLGF KD + +E K+KE+KNGR
Sbjct: 471 LQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGR 530
Query: 198 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
LA+LA +G+ + Q+ G GP +NL HLADP +NNI
Sbjct: 531 LAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNNI 566
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 127/256 (49%), Gaps = 40/256 (15%)
Query: 11 IATTAFPSVLSSSKSKFFT---AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
+ PS + SS+ F A S P N ++ W + YLDGS PGDF
Sbjct: 23 FGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQL----WFASKQSLSYLDGSLPGDF 78
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
GFDPL L + PE + E E+I+ R+AML G + PE LG + A+ A
Sbjct: 79 GFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAE--TA 135
Query: 122 VPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-------- 162
+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 136 LPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKG 195
Query: 163 ---PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+ G GP
Sbjct: 196 LGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALVTGVGP 254
Query: 219 LENLATHLADPWHNNI 234
+NL HLADP +NNI
Sbjct: 255 YQNLLDHLADPVNNNI 270
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 108/203 (53%), Gaps = 19/203 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L+RY+E+ELIH RWAML G +PE L VQ
Sbjct: 259 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 318
Query: 116 AQE--WAAVPGGQA------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
E W G Q Y G P + +L IL + L + VE R+ P +
Sbjct: 319 FGEPIWFKA-GAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 377
Query: 166 ------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKEIKNGRLA++A +GF Q+ G GP+
Sbjct: 378 FGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYA-QAIVTGEGPV 436
Query: 220 ENLATHLADP-WHNNIGDVIIPR 241
EN HL DP HN + ++ +
Sbjct: 437 ENWLYHLQDPSAHNGLTAALVTQ 459
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 104/194 (53%), Gaps = 19/194 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG---- 111
PPYL+G PGD+G+D LG P L+RY+E+ELIH RWAML G++ PE L
Sbjct: 16 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 75
Query: 112 ----NWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS------M 159
W +A GG YLG V ++ IL + L + E R+
Sbjct: 76 IAEPVWFKAGAQIFSEGG-LDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNF 134
Query: 160 EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
KD + YPGG FDPLG + DP E KVKEIKNGRLA+ A GF V Q+ G PL
Sbjct: 135 GKDLD-SLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYV-QAIVTGESPL 192
Query: 220 ENLATHLADPWHNN 233
ENL+ HLA P+ N
Sbjct: 193 ENLSAHLASPFTVN 206
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEI 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 187 TDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 242
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 243 NLADHLADPVNNN 255
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 103/191 (53%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML GI+ PE L
Sbjct: 46 PAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAMLGALGIVTPELLAKNGVPF 105
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P + + L ++ + + VE R + P +
Sbjct: 106 GEAVWFKAGAQIFQEGG-LNYLGNPSLIHAQNIVATLAVQVILLGLVEGYR-VNGGPAGE 163
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 164 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFFV-QAIVTGKGPIQNL 222
Query: 223 ATHLADPWHNN 233
HL++P NN
Sbjct: 223 DDHLSNPGVNN 233
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R E E+IH RWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 235 GPLENLADHLADPVNNN 251
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YL G GD+G+DPL LG P L Y++SEL+H RWAML V G+LV E
Sbjct: 35 WAPGVVAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQE-- 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
V + G L P + +L EF+ + +VE +R S+
Sbjct: 93 -----VVKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSVN 147
Query: 161 KDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP K YPGG FDPLGFSK +E + KEIKNGRLA++A++GF +Q
Sbjct: 148 EDPIFKGNKVPNPEMGYPGGIFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGFVLQAQ 205
Query: 212 AYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 243
A G GPL L+ HL++P+ N NIG +P +
Sbjct: 206 A-TGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSV 240
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 109/200 (54%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
PPYL G PGD+GFD LG+ ++Y E++H RWAMLA G L+PE L L
Sbjct: 126 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFH 185
Query: 116 AQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
E ++ + G YLG P + ++VI + + E+ R +
Sbjct: 186 FAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEAL 245
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPL S+DP FE+ KVKEIKNGRLA++A++GF Q+A+
Sbjct: 246 EPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYA-QAAFT 304
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL H++DP HNN+
Sbjct: 305 GKGPVQNLVDHVSDPLHNNL 324
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 118
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 GVKFGEAVWFKAGSLIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 177
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HL+DP ++N
Sbjct: 234 GPLENLADHLSDPVNSN 250
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 56 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 114
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 115 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 173
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 174 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 229
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 230 GKGPLENLADHLADPVNNN 248
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEITDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 66 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 126 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDV 184
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 185 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 243
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 244 DHLADPVANN 253
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 102/190 (53%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R +
Sbjct: 126 GEAVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENL+
Sbjct: 185 EDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLS 243
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 244 DHLADPAVNN 253
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 180 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 236 GKGPLENLADHIADPVNNN 254
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE ++Y+E+ELIH RWAML G + PE L
Sbjct: 51 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTS 110
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG+P + ++ I++ + + + +E R + P
Sbjct: 111 FGESVWFRAGAQIFKDGG-LDYLGSPALIHAQSIGAIVISQVILMGLIEGYR-VNGGPAG 168
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 169 EGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPVEN 227
Query: 222 LATHLADPWHNN 233
A H+ADP+ N
Sbjct: 228 WAEHIADPFTAN 239
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 59 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + L + VE R
Sbjct: 118 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIAGGP 176
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 177 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 232
Query: 217 GPLENLATHLADPWHNN 233
GP+ENLA HLADP NN
Sbjct: 233 GPIENLADHLADPVTNN 249
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GP+ENLA HLADP +NN
Sbjct: 235 GNGPIENLADHLADPVNNN 253
>gi|169261102|gb|ACA52199.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata
subsp. hookeri]
gi|169261104|gb|ACA52200.1| chloroplast chlorophyll A/B-binding protein [Oenothera
grandiflora]
Length = 93
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MAS L+ CG++ +AFPSVL SSKSKF + S + S+ MSA+WMPG+PRPPYLD
Sbjct: 4 MASK-LLGCGLSASAFPSVLCSSKSKFAGSTSFAGFVSNGSRITMSAEWMPGQPRPPYLD 62
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIH 91
GSAPGDFGFDPLRLGEVPENLER+KESE+ H
Sbjct: 63 GSAPGDFGFDPLRLGEVPENLERFKESEIYH 93
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 115
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 116 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 173
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 174 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 232
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 233 NDHLANPAVNN 243
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ PG G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVPGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL+ LA P NN
Sbjct: 238 PIENLSDPLAAPVANN 253
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 124/261 (47%), Gaps = 46/261 (17%)
Query: 9 CGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP------ 51
CGI + AF +SS K V + A + AT K +SA P
Sbjct: 1 CGIGSCAFAGGQISSLKPHTNQLVGVGAGVHGESRVTMRKSATKKSVVSASPSPWYGPDR 60
Query: 52 --------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL 103
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G +
Sbjct: 61 VLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 104 VPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVE 154
PE L G W +A GG YLG P + ++ I + + + VE
Sbjct: 120 FPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVE 178
Query: 155 HQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 179 GYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 235
Query: 209 QQSAYPGTGPLENLATHLADP 229
Q+ G GP+ENLA HLADP
Sbjct: 236 -QAIVTGKGPIENLADHLADP 255
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HL+DP +NN
Sbjct: 242 NLADHLSDPVNNN 254
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 103/191 (53%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML GI+ PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGIVTPELLQKNGVQF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P + + L ++ + + VE R + P +
Sbjct: 115 GEAVWFKAGAQIFQEGG-LNYLGNPSLIHAQNIVATLAVQVVLLGLVEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFFV-QAIVTGKGPIQNL 231
Query: 223 ATHLADPWHNN 233
HL++P NN
Sbjct: 232 DDHLSNPGVNN 242
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 104/194 (53%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P + ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 103/193 (53%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 122 VKFGEAVWFKAGSQIFQEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 221 NLATHLADPWHNN 233
NL+ HLADP NN
Sbjct: 240 NLSDHLADPVANN 252
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 104/194 (53%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P V ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 101/191 (52%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE RY+E E+IH RWA+L GI+ PE L V+
Sbjct: 53 PSYLKGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVK 112
Query: 116 AQEWAAVPGGQA-------TYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
QE G YLG P V ++ + + + + E R + P +
Sbjct: 113 FQEAVWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYR-VNGGPAGE 171
Query: 167 ----KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPGGAFDPLG + DP F E KVKEIKNGRLA A +GF V Q+ G GP++NL
Sbjct: 172 ITDPLYPGGAFDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFFV-QAIVTGKGPIQNL 230
Query: 223 ATHLADPWHNN 233
HLADP+ N
Sbjct: 231 EDHLADPFAVN 241
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 129
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 130 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 188
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 189 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 244
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 245 NLADHLADPVNNN 257
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+ +D L PE R +E E+IH RWAML G + PE L
Sbjct: 51 EQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 110
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 111 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 169
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 170 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 228
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 229 NLFDHVADPVANN 241
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 66 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 124
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 183
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 184 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 239
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 240 GPIENLADHLADP 252
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+ GEP P YL+G PGD+G+D L PE +RY++ ELIH RWA+L G +VPE L
Sbjct: 52 LSGEP-PAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLA 110
Query: 110 L--------GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM 159
G W + GG YLG V ++ L+++ + + + E R +
Sbjct: 111 RNGVAMPADGVWFKVGAEIFKEGG-LNYLGNENLVHAQSIVATLLVQLVLMGWAEGYR-I 168
Query: 160 EKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
P + YPGGAFDPLG + DP E KVKE+KNGR+A+ A GF V Q+
Sbjct: 169 NGGPLGEGLDPLYPGGAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLV-QAIVTQ 227
Query: 216 TGPLENLATHLADPWHNNI 234
GPLENLA HLA P NN+
Sbjct: 228 KGPLENLADHLAAPGTNNV 246
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 25/203 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
WMPG P +L G PGD+GFDPL LGE ++L+ Y ++EL H RWAML V G+ PE L
Sbjct: 39 WMPGTAAPSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELL 98
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ W P + + T+ ++ + + E +R S+
Sbjct: 99 TMFGVSDLPNWHDAPFYNGYFASS-------TTLFTVQMFMMNWAEIRRWQDIKNPGSVS 151
Query: 161 KDPE---------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP YPGG F+P+ + K + + K KEI NGRLA++A +G C Q
Sbjct: 152 EDPAFPGNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANGRLAMVAALG-CFIQY 210
Query: 212 AYPGTGPLENLATHLADPWHNNI 234
+ G GP+ENL +HL++P NN+
Sbjct: 211 DHTGVGPVENLTSHLSNPGVNNV 233
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 128
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 129 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 187
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 188 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 244 NLNDHLADPVANN 256
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 115 GEAVWFKAGAQIFQEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 NDHLANPAVNN 242
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 75 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARN 133
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 134 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 192
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPG +FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 193 LGEITDP---LYPGNSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 248
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 249 GPLENLADHLADPVNNN 265
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A GG YLG P V ++ I + + + VE R D
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDV 186
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 187 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLN 245
Query: 224 THLADPWHNN 233
HLADP NN
Sbjct: 246 DHLADPVANN 255
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEI 182
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 239 NLADHLADPVNNN 251
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 128
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 129 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 187
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 188 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
Query: 221 NLATHLADPWHNN 233
NLA HL+DP +NN
Sbjct: 244 NLADHLSDPVNNN 256
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE ++Y+E+ELIH RWAML G + PE L
Sbjct: 48 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTS 107
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG+P + ++ I++ + + + +E R + P
Sbjct: 108 FGESVWFRAGAQIFKDGG-LDYLGSPALIHAQSIGAIVISQVILMGLIEGYR-VNGGPAG 165
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 166 EGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPVEN 224
Query: 222 LATHLADPWHNN 233
A H+ADP+ N
Sbjct: 225 WAEHVADPFTAN 236
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
PPYL G PGD+GFD LG+ ++Y E++H RWAMLA G L+PE L
Sbjct: 123 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFH 182
Query: 116 AQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
E ++ + G YLG P + ++VI + + E+ R +
Sbjct: 183 FAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEAL 242
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPL S+DP FE+ KVKEIKNGRLA++A++GF Q+A+
Sbjct: 243 EPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYA-QAAFT 301
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL H++DP HNN+
Sbjct: 302 GKGPVQNLVDHVSDPLHNNL 321
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GP+ENLA HLADP NN
Sbjct: 236 GPIENLADHLADPVTNN 252
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIITGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PIENLLDHLADPVANN 253
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HL+DP +NN
Sbjct: 242 NLADHLSDPVNNN 254
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQF 117
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + VE R + P +
Sbjct: 118 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 175
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NL
Sbjct: 176 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPVQNL 234
Query: 223 ATHLADPWHNN 233
HL++P NN
Sbjct: 235 DDHLSNPTVNN 245
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNG 121
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 122 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 180
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 181 GEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 239
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 240 NLYDHLADPVANN 252
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 104/194 (53%), Gaps = 16/194 (8%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 163
G W +A GG YLG P V ++ I + + + FVE R + P
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYR-VGGGP 180
Query: 164 E----KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+
Sbjct: 181 LGWGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPI 239
Query: 220 ENLATHLADPWHNN 233
ENL HLADP NN
Sbjct: 240 ENLYDHLADPVANN 253
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 128/268 (47%), Gaps = 46/268 (17%)
Query: 6 LMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP--- 51
+ SCGI + AF +SS K V + A + +T K + SA P
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYG 60
Query: 52 -----------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
GEP P +L G PGD+G+D L PE + +E E+IH RWAML
Sbjct: 61 PDRVLYLGPFSGEP-PSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 119
Query: 101 GILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIA 151
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 120 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMG 178
Query: 152 FVEHQRSME------KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
VE R DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + G
Sbjct: 179 AVEGYRIAGGPLGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNN 233
F V Q+ G GP+ENLA HLADP +NN
Sbjct: 236 FFV-QAIVTGKGPIENLADHLADPVNNN 262
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HL+DP +NN
Sbjct: 236 GPLENLADHLSDPVNNN 252
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 126 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPL+
Sbjct: 185 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLK 240
Query: 221 NLATHLADPWHNN 233
NLA H+ADP +NN
Sbjct: 241 NLADHIADPVNNN 253
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E +IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRIGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HL+DP +NN
Sbjct: 236 GPLENLADHLSDPVNNN 252
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 118
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 177
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA H+ADP +NN
Sbjct: 234 GPLENLADHIADPVNNN 250
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G GD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWGCQVVFMGAVEGYRVAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+ DPLG + DP+ F E KVKEIKNGRLA+L+ GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSLDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLEN+ HLADP +NN
Sbjct: 235 GKGPLENITDHLADPVNNN 253
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ +I + + + VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEI 183
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP++ E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 VDP---LYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 239
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 58 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 117
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 118 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 176
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 177 GEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 235
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 236 NLFDHVADPVANN 248
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HL DP +NN
Sbjct: 237 GPLENLADHLTDPVNNN 253
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 64 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 123
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 182
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 239 NLNDHLADPVANN 251
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 58 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 117
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 118 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 176
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 177 GEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 235
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 236 NLFDHVADPVANN 248
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG FDPLG + DP+ F + KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGAQIFSDGGL-DYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIAGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 181 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 236
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA LADP +NN
Sbjct: 237 GPLENLADPLADPVNNN 253
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 34/242 (14%)
Query: 13 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
++ +P + ++ ++F +S+ A ++ + + + W+PG P +LDGS GDFGFDPL
Sbjct: 16 SSCYPRIRNAHCARF---LSIRAQSSGSDERPI---WLPGLSPPQHLDGSLAGDFGFDPL 69
Query: 73 RLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGT 132
LG+ PE L Y ++EL+H R+AM + GILV + L W + + T
Sbjct: 70 ELGKDPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRDLPVWYEAGATEFEFADT 129
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSME---------KDP----------EKKKYPGG-A 172
T+ V++ + + + E +R + +D + YPGG
Sbjct: 130 -------RTLFVVQLILMGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPF 182
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
FDP G +D K KE+KNGRLA++A +G V Q+ + TGP++NL TH++DPWHN
Sbjct: 183 FDPAGLGRDINNARTLKEKELKNGRLAMVAILGVFV-QAFFTKTGPIDNLLTHVSDPWHN 241
Query: 233 NI 234
I
Sbjct: 242 TI 243
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 126/250 (50%), Gaps = 32/250 (12%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
+A ++L+ A A P+ S A + A + W PG P+LD
Sbjct: 5 VAMSSLLGSKSAVAARPAAFSGKARTARVQARFVAVSAADRQV-----WFPGNAPAPHLD 59
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
GS PGDFGFDPL LG P+ L+ ++++EL+H R AM AV GIL P V +W
Sbjct: 60 GSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNIPQW- 118
Query: 121 AVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------- 167
G P P+ L L I+ + +VE +R ++ K+P +
Sbjct: 119 -YDAGSVWVQNNPNFPFAAL---LFIQIILTGWVETKRWLDFKNPGSQADGSFLGVTDDF 174
Query: 168 ------YPGGA-FDPLGFSKDPQ-KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
YPGG FDP G S+ + + ++Y+ EIKNGRLA++AF+GF Q +A G GP+
Sbjct: 175 KGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAA-TGKGPI 233
Query: 220 ENLATHLADP 229
+NLA HLA+P
Sbjct: 234 DNLADHLANP 243
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D + PE + +E E+IHCRWAML G + PE L
Sbjct: 24 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLVKNG 83
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 84 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 142
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 143 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 198
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 199 PIENLYDHLADPVANN 214
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+GFD L E P +++ E++H RWAMLA G LVPE L +
Sbjct: 130 PKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFH 189
Query: 116 AQE-------WAAVPGGQATYLGTPVPW--GTLPTILVIEFLSIAFV--EHQRSMEKD-- 162
E ++ + G YLG P G+ I++ +I V E+ R +
Sbjct: 190 FTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEAL 249
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPL SKD + FEE KVKEIKNGRLA++A++GF Q+A
Sbjct: 250 EPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGF-YSQAALT 308
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL H+ADP+HNN
Sbjct: 309 GKGPVQNLLNHIADPFHNNF 328
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 104/195 (53%), Gaps = 28/195 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +LDGS PGDFGFDPL L PE+L ++EL+H RWAML GI +PE L +
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 116 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---- 163
W G Q + T T+ ++E + I + E +R + DP
Sbjct: 61 TPSWYTA-GEQEYFTDT-------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPN 112
Query: 164 -----EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GT
Sbjct: 113 NKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGT 171
Query: 217 GPLENLATHLADPWH 231
GP++NL HLADP H
Sbjct: 172 GPIDNLFAHLADPGH 186
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 103 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 162
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 163 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 221
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 222 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 277
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 278 NLADHLADPVNNN 290
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 64 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 123
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 182
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 239 NLNDHLADPVANN 251
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 123
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGEV 182
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 221 NLATHLADPWHNN 233
NL+ HLADP NN
Sbjct: 239 NLSDHLADPVANN 251
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGGAFDPLG + DP+ E KVK+IKNGRLA+ + GF V Q+
Sbjct: 180 GPLGEVVDP---LYPGGAFDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFFV-QAIVT 235
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 236 GKGPLENLADHLADPVNNN 254
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 127/256 (49%), Gaps = 40/256 (15%)
Query: 11 IATTAFPSVLSSSKSKFFT---AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDF 67
+ PS + SS+ F A S P N ++ W + YLDGS PGDF
Sbjct: 23 FGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQL----WFASKQSLSYLDGSLPGDF 78
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
GFDPL L + PE + E E+I+ R+AML G + PE LG + A+ A
Sbjct: 79 GFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAE--TA 135
Query: 122 VPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-------- 162
+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 136 LPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKG 195
Query: 163 ---PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q+ G GP
Sbjct: 196 LGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QALVTGVGP 254
Query: 219 LENLATHLADPWHNNI 234
+NL HLADP +NNI
Sbjct: 255 YQNLLDHLADPVNNNI 270
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAM G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + P+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADVPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 68 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 126 GEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 184
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 89
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 90 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 148
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 149 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 204
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 205 NLADHLADPVNNN 217
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 104/194 (53%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P + ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F + KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 60 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 119
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 120 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 178
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 179 GEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 237
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 238 NLFDHVADPVANN 250
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 124/230 (53%), Gaps = 39/230 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S+++ ++ F+A P A A + A+ W PG P P +LDGS GD+GFDPL LG+
Sbjct: 4 SMIAQRRAGAFSARQAPRAVRAQA--AVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPE-----ALGLGNWVQAQEWAAVPGGQATYLGT 132
P+ L+ Y ++EL+H R+AML GI++ LG W A G+
Sbjct: 62 PQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDA--------GKVVVEKN 113
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK-----------------YPGGA-F 173
+ PT++VI+F + + E +R + K+P + YPGG F
Sbjct: 114 NI---DFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFF 170
Query: 174 DPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
DP+G S+ D K++EYK KE+KNGRLA++A +GF Q +A G GPL+NL
Sbjct: 171 DPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAA-TGKGPLDNL 219
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PIENLFDHLADPVANN 253
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL H+ADP NN
Sbjct: 238 PVENLYDHVADPVANN 253
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 130
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 131 GEAVWFKAGSQIFSDGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEI 189
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 190 TDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 245
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 246 NLADHLADPVNNN 258
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 100/193 (51%), Gaps = 17/193 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L P+ RY+E ELIH RWA+L GIL PE L
Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQ 110
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG + ++ L ++ + + E R+
Sbjct: 111 FGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGF 169
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP++
Sbjct: 170 LDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTGKGPVQ 228
Query: 221 NLATHLADPWHNN 233
NL HLADP N
Sbjct: 229 NLTDHLADPTVNK 241
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE R +E E+IH RWAML G L PE L
Sbjct: 66 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 125
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 126 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEI 184
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 241 NLNDHLADPVANN 253
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTKF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L + + + +E R + P +
Sbjct: 115 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLACQVILMGLIEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP++NL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVQNL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 DDHLANPTVNN 242
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP +NN
Sbjct: 239 PIENLFDHLADPANNN 254
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L GN V
Sbjct: 114 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLA-GNGVP 172
Query: 116 AQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSMEKDP 163
E A G Q YLG P +V+ FLS + VE R
Sbjct: 173 FGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 230
Query: 164 EKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP
Sbjct: 231 DFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGP 289
Query: 219 LENLATHLADPWHNNI 234
+ENL HLADP NNI
Sbjct: 290 VENLTFHLADPSSNNI 305
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 100/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D LG P L RY+E+E+IH RWAML P +L + G
Sbjct: 349 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLVTPELLAGNGVPFGEGAV 408
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSMEKDPEKKK- 167
W +A G YLG P +V+ FLS + VE R + +
Sbjct: 409 WYKAGAQIFSADGL-NYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRE 465
Query: 168 ----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP+ENL
Sbjct: 466 LDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGPVENLT 524
Query: 224 THLADPWHNNI 234
HLADP NNI
Sbjct: 525 FHLADPSSNNI 535
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP+ENL HLA
Sbjct: 5 YPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGPVENLTFHLA 63
Query: 228 DPWHNNI 234
DP NNI
Sbjct: 64 DPSSNNI 70
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 240
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 241 NLFDHLADPVANN 253
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 118/235 (50%), Gaps = 51/235 (21%)
Query: 14 TAFPSVLSSSKSKFFT--AVSL-------PAAANATSKYAMSAD---WMPGEPRPPYLDG 61
T F + + ++K+ F AVSL P A A+ + W PG PP+LDG
Sbjct: 29 TVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDG 88
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S P DFGFDPL LG PE L+ +SEL+HCRWAML GI +PE L
Sbjct: 89 SLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELL------------- 135
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGF-S 179
T LG IL + + + D YPGG FDPLG+ S
Sbjct: 136 ------TKLG----------ILNTD----PIFPNNKLTGTD---VGYPGGLWFDPLGWGS 172
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
P+K +E + KEIKNGRLA+L+ +G Q+ Y GTGP++NL HLADP H +
Sbjct: 173 GSPEKIKELRTKEIKNGRLAMLSVMGAWF-QAEYTGTGPIDNLLAHLADPGHATV 226
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G GD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PVENLLDHLADPVANN 253
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 73 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 131
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 132 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 190
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 191 LGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 246
Query: 217 GPLENLATHLADPWHNN 233
GP+ENLA HLADP NN
Sbjct: 247 GPIENLADHLADPVTNN 263
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G L PE L
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + L ++ + + +E R + P +
Sbjct: 115 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNG LA+ + GF V Q+ G GP++NL
Sbjct: 173 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGALAMFSMFGFFV-QAIVTGKGPVQNL 231
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 232 DDHLANPGVNN 242
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL H+ADP NN
Sbjct: 238 PIENLFDHVADPVANN 253
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 124/261 (47%), Gaps = 46/261 (17%)
Query: 9 CGIATTAFPS-VLSSSKSKFFTAVSLPAAAN----------ATSKYAMSADWMP------ 51
CGI + AF +SS K + + A + AT K ++SA P
Sbjct: 1 CGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDR 60
Query: 52 --------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL 103
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G +
Sbjct: 61 VLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 104 VPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVE 154
PE L G W +A GG YLG P V ++ I + + + VE
Sbjct: 120 FPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVE 178
Query: 155 HQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
R DP YPGG+FDPL + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 179 GYRIAGGPLGEVTDP---IYPGGSFDPLRLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 235
Query: 209 QQSAYPGTGPLENLATHLADP 229
Q+ G GP+ENLA HLADP
Sbjct: 236 -QAIVTGKGPIENLADHLADP 255
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 101/190 (53%), Gaps = 14/190 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G +VPE L
Sbjct: 69 PSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLERNGVKI 128
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DP 163
G W +A G YLG P + + +L + + + +E R +P
Sbjct: 129 GEAVWFKAGSQIFRDEG-LNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRISGGPLGEP 187
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG FDPL + DP++F KVKEIKNGRLA+ A +GF V Q+ G GPLENL
Sbjct: 188 TDPLYPGGNFDPLHLADDPEEFAILKVKEIKNGRLAMFAMLGFYV-QAIVTGKGPLENLY 246
Query: 224 THLADPWHNN 233
HLADP+ NN
Sbjct: 247 DHLADPFKNN 256
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+ GEP P YL G PGD+G+D P RY+ E+IH RWA+L GI+ PE L
Sbjct: 54 LSGEP-PSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALGIVTPEILA 112
Query: 110 LGN---------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS 158
W +A GG YLG P + ++ L ++ + + E R+
Sbjct: 113 QNGVPFSGDAAIWFKAGSEIFKEGG-LNYLGNPNLIHAQSILATLAVQVIVMGAAEGFRA 171
Query: 159 MEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
+ P + YPGG FDPLG + DP F E KVKEIKNGRLA+ A GF V Q+
Sbjct: 172 NGEAPGVEGLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFACFGFFV-QAIVT 230
Query: 215 GTGPLENLATHLADPWHNN 233
G GP++NL HLADP NN
Sbjct: 231 GKGPIQNLEDHLADPGVNN 249
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 61 EQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I ++ + + FVE R
Sbjct: 121 VNFGEAVWFKAGAQIFSEGG-LDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFD LG ++DP F E+KVKE NGRLA+ + +GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
N H+ADP NN
Sbjct: 239 NFFDHVADPVANN 251
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 51 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 110
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 111 FGEAVWFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 169
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 170 GLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 225
Query: 220 ENLATHLADP 229
ENL+ HLA+P
Sbjct: 226 ENLSDHLANP 235
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L P+ + +E E+IH RWAML G + PE L
Sbjct: 60 GEP-PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRN 118
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 177
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 178 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 233
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA H+ADP +NN
Sbjct: 234 GPLENLADHIADPVNNN 250
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 72 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 130
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 190 LGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 245
Query: 217 GPLENLATHLADPWHNN 233
GP+ENLA HLADP NN
Sbjct: 246 GPIENLADHLADPVTNN 262
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 31 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 89
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 90 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 148
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 149 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 204
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA H+ADP +NN
Sbjct: 205 GPLENLADHIADPVNNN 221
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L GN V
Sbjct: 62 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLA-GNGVP 120
Query: 116 AQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSMEKDP 163
E A G Q YLG P +V+ FLS + VE R
Sbjct: 121 FGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 178
Query: 164 EKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP
Sbjct: 179 DFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGP 237
Query: 219 LENLATHLADPWHNNI 234
+ENL HLADP NNI
Sbjct: 238 VENLTFHLADPSSNNI 253
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L
Sbjct: 297 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELL 349
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 51 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 110
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 111 FGEAVWFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 169
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 170 GLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 225
Query: 220 ENLATHLADP 229
ENL+ HLA+P
Sbjct: 226 ENLSDHLANP 235
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + F+E R
Sbjct: 121 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFIEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 238
Query: 221 NLATHLADPWHNN 233
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 50 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 109
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 110 FGEAVWFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 168
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 169 GLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 224
Query: 220 ENLATHLADP 229
ENL+ HLA+P
Sbjct: 225 ENLSDHLANP 234
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G GD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L GN V
Sbjct: 612 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLA-GNGVP 670
Query: 116 AQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSMEKDP 163
E A G Q YLG P +V+ FLS + VE R
Sbjct: 671 FGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 728
Query: 164 EKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP
Sbjct: 729 DSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGP 787
Query: 219 LENLATHLADPWHNNI 234
+ENL HLADP NNI
Sbjct: 788 VENLTFHLADPSANNI 803
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L GN V
Sbjct: 151 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLA-GNGVP 209
Query: 116 AQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSMEKDP 163
E A G Q YLG P +V+ FLS + VE R
Sbjct: 210 FGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 267
Query: 164 EKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP
Sbjct: 268 DFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGP 326
Query: 219 LENLATHLADPWHNNI 234
+ENL HLADP NNI
Sbjct: 327 VENLTFHLADPSANNI 342
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 105/207 (50%), Gaps = 43/207 (20%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+ +++IH RWAML V G PE +
Sbjct: 854 PEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGVLGCWFPECI------- 906
Query: 116 AQEWAAVPGGQ---------------ATYLGTPVPWGTL-PTILVIEFLS----IAFVEH 155
W VP G+ YLG P G + +V+ FLS + VE
Sbjct: 907 -NRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQP---GLIHAQSVVLTFLSTLVLMGAVEA 962
Query: 156 QRSM--------EKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
RS + DP YPGG FDPLG + DP+ F E KVKE+KNGRLA++A GF
Sbjct: 963 YRSAGSVGDFGADLDP---LYPGGPFDPLGLADDPEAFLELKVKEVKNGRLAMVAIFGFF 1019
Query: 208 VQQSAYPGTGPLENLATHLADPWHNNI 234
V Q G GP+EN HL DP+ NNI
Sbjct: 1020 V-QGILTGKGPVENWVDHLTDPFVNNI 1045
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+ G P YL G GD+GFD L P+ +RY+++EL + RWAML V G L PE L
Sbjct: 371 LSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS 430
Query: 110 LGNWVQAQE--W-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
V E W + GG YL P + L LV+E + E R
Sbjct: 431 NVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAETWREAG 490
Query: 161 KDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
+ P + K YPGG FDPLG SKDP F E KVKE+KNGRLA+LA +G V Q+ G
Sbjct: 491 EGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFV-QAGVTGQ 549
Query: 217 GPLENLATHLADPWHN 232
PLENL+ HLA+P N
Sbjct: 550 SPLENLSAHLANPGVN 565
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG FDPLG + DP+ F E KVKE+KNGRLA++A GF V Q G GP+EN HL
Sbjct: 40 YPGGPFDPLGLADDPEAFLELKVKEVKNGRLAMVAIFGFSV-QGILTGKGPVENWVDHLT 98
Query: 228 DPWHNNI 234
DP+ NN+
Sbjct: 99 DPFENNL 105
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 51 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 110
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 111 FGEAVWFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 169
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 170 GLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 225
Query: 220 ENLATHLADP 229
ENL+ HLA+P
Sbjct: 226 ENLSDHLANP 235
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKF 123
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 124 GEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEV 182
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 183 TDP---IYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 221 NLATHLADPWHNN 233
NL+ HLADP NN
Sbjct: 239 NLSDHLADPVANN 251
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 104/194 (53%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 31 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 89
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG+P + ++ I + + + +E R
Sbjct: 90 GVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP 148
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 149 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 207
Query: 220 ENLATHLADPWHNN 233
ENLA H+ADP +NN
Sbjct: 208 ENLADHIADPVNNN 221
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 178
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 179 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 234
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLA P +NN
Sbjct: 235 GPLENLADHLAGPVNNN 251
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P Y G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 120
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+K+GRLA+ + GF V Q+ G
Sbjct: 180 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKHGRLAMFSMFGFFV-QAIVTGK 235
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 236 GPLENLADHLADPVNNN 252
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 36 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 95
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 96 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEV 154
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 155 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 210
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 211 NLADHLADPVNNN 223
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 107/200 (53%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+GFD L E P +++ E++H RWAMLA G LVPE L +
Sbjct: 130 PKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFH 189
Query: 116 AQE-------WAAVPGGQATYLGTPVPW--GTLPTILVIEFLSIAFV--EHQRSMEKD-- 162
E ++ + G YLG P G+ I++ +I V E+ R +
Sbjct: 190 FTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEAL 249
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPL SKD FEE KVKEIKNGRLA++A++GF Q+A
Sbjct: 250 EPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGF-YSQAALT 308
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL H+ADP+HNN
Sbjct: 309 GKGPVQNLLDHIADPFHNNF 328
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 123/250 (49%), Gaps = 51/250 (20%)
Query: 7 MSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGD 66
+S I++TA ++K++ A P A +A + + W PG+ +LDGS PGD
Sbjct: 3 VSMRISSTAGLKTRVATKTR---ASRGPVAVSANADRPV---WYPGKAPAAHLDGSLPGD 56
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------GLGNWVQA---Q 117
+GFDPL L PE + ++EL H RWAML V G + PE L L NWV A Q
Sbjct: 57 YGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADLPNWVDAATYQ 116
Query: 118 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP------ 163
WA PGG T+ I+ + E +R S+ DP
Sbjct: 117 YWA--PGG---------------TLFFIQMAMFNWAEIRRWQDMKNPGSVNTDPLFGYNS 159
Query: 164 ----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
YP G FD G++KD + E K+KEIKNGRLA+LAF+G C Q G GP+
Sbjct: 160 NDTNTDVGYPKGLFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQY-VQTGVGPV 218
Query: 220 ENLATHLADP 229
ENL +H+ +P
Sbjct: 219 ENLFSHMGNP 228
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 52 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 111
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 112 FGEAVWFKAGAQIFAEGGL-NYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 170
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 171 GLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 226
Query: 220 ENLATHLADP 229
ENL+ HLA+P
Sbjct: 227 ENLSDHLANP 236
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 73 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKF 132
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 133 GEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEV 191
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 192 TDP---IYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 247
Query: 221 NLATHLADPWHNN 233
NL+ HLADP NN
Sbjct: 248 NLSDHLADPVANN 260
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 76 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 134
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A G YLG+P V ++ I + + + +E R
Sbjct: 135 GVKFGEAVWFKAGA-QIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGP 193
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGG FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GPL
Sbjct: 194 LGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPL 252
Query: 220 ENLATHLADPWHNN 233
ENLA HLADP +NN
Sbjct: 253 ENLADHLADPVNNN 266
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 66 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 124
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 125 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 183
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 184 LGEVVDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 239
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HL DP +NN
Sbjct: 240 GPLENLADHLFDPVNNN 256
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 161 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
++ YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 187 LREVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 245
Query: 220 ENLATHLADP 229
ENLA HLADP
Sbjct: 246 ENLADHLADP 255
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRIGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 240
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 241 NLYDHLADPVANN 253
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L GN V
Sbjct: 408 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLA-GNGVP 466
Query: 116 AQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSMEKDP 163
E A G Q YLG P +V+ FLS + VE R
Sbjct: 467 FGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEAYRYGGGVG 524
Query: 164 EKKK-----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ + YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP
Sbjct: 525 DFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGP 583
Query: 219 LENLATHLADPWHNNI 234
+ENL HLADP NNI
Sbjct: 584 VENLTFHLADPSANNI 599
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+ G P YL G GD+GFD L P+ +RY+++EL + RWAML V G L PE L
Sbjct: 167 LSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS 226
Query: 110 LGNWVQAQE--W-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
V E W + GG YL P + L LV+E + E R
Sbjct: 227 NVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAETWREAG 286
Query: 161 KDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
+ P + K YPGG FDPLG SKDP F E KVKE+KNGRLA+LA +G V Q+ G
Sbjct: 287 EGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFV-QAGVTGQ 345
Query: 217 GPLENLATHLADPWHN 232
PLENL+ HLA+P N
Sbjct: 346 SPLENLSAHLANPGVN 361
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG FDPLG + DP E KVKE+KNGRLA++A +GF VQ GP+ENL HLA
Sbjct: 73 YPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTK-AGPVENLTFHLA 131
Query: 228 DPWHNNI 234
DP NNI
Sbjct: 132 DPSANNI 138
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH WAML G + PE L
Sbjct: 4 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRN 62
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 63 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 121
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 122 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 177
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 178 GPLENLADHLADPVNNN 194
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 44 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 103
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 104 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 162
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 163 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 218
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 219 PIENLYDHLADPVANN 234
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 181
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 182 GEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
Query: 221 NLATHLADPWHNN 233
NL HL+DP NN
Sbjct: 241 NLFDHLSDPVANN 253
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G GD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + FVE R
Sbjct: 121 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPL 179
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNG LA+ + GF V Q+ G GP+E
Sbjct: 180 GEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGSLAMFSMFGFFV-QAIVTGKGPIE 238
Query: 221 NLATHLADPWHNN 233
NL H+ADP +NN
Sbjct: 239 NLFDHVADPVNNN 251
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE-------AL 108
P YL G PGD+G+D L P + ++ E+IHCRW ML G + PE
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFKEGGL-DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E +VKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 IDP---LYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGESVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKELKNGRLATFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 238 PVENLLDHLADPVANN 253
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 111/219 (50%), Gaps = 32/219 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-GLGNWV 114
P YL+G GD+G+DPL LG+ E +E+Y+ +EL+H RWAMLA GIL+PE L G +
Sbjct: 66 PEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLAAAGILIPEGLQANGADI 125
Query: 115 QAQEW-----AAVPGGQATYLGTPVPWGT------LPTILVIEFLSIAFVEHQRSMEKDP 163
+ W + GG Y VP+G L + +IE + + VE R P
Sbjct: 126 KGGTWFETGAEMLNGGTLNYFA--VPFGVVQNPLPLAAVTLIEIVLLGAVEKFRVDGTGP 183
Query: 164 E-----------------KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
+ YPGG FDPL + DP+ F E +VKE KNGRLA++ + F
Sbjct: 184 AGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPEVFAELQVKETKNGRLAMVGVLAF 243
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 245
+ QS G GP N H++DP+ N+ V+ VP
Sbjct: 244 AI-QSYVTGEGPYANFTKHISDPFGYNLLTVLQGDDRVP 281
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 111/195 (56%), Gaps = 25/195 (12%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+P P YLDG+ GD+GFDPL LG PE L+ Y+E+EL++ RWAM+AV GI EALG
Sbjct: 50 LPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEALG 109
Query: 110 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPE 164
+Q++ + A GQ Y G P+ L + F ++ F+E +R + K
Sbjct: 110 ----IQSKWYMA---GQEDY-GFPI-----NAQLAVLFPTMGFLETKRITGWLATGKSGI 156
Query: 165 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
+ +P FDPLG D + K+KEIKNGR A++AFVG CVQ GPL L
Sbjct: 157 NETFP---FDPLGMGADS---DSMKLKEIKNGRAAMIAFVGICVQALVLR-EGPLAALQD 209
Query: 225 HLADPWHNNIGDVII 239
H+A+P+ NN+ ++
Sbjct: 210 HVANPFGNNLATNVM 224
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 124
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W + GG YLG P V ++ I + + + VE R
Sbjct: 125 GEAVWFKKGSQIFSEGG-LQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 183
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + D + F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 184 VDP---LYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 239
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 110/196 (56%), Gaps = 28/196 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
WMPG P YL+G+ PGDFGFDPL LG+ P L+ Y ++EL++ R+AMLAV GILVPE L
Sbjct: 47 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELL 106
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 159
+G A G+ Y ++ ++ L A+VE +R S
Sbjct: 107 SNIGFSWPGAGVAWYDAGKFEYFAPA------SSLFGVQMLLFAWVEIRRYQDFVKPGSA 160
Query: 160 EKDP----------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+DP + YPGG FDP G+SK K K+KEIKNGRLA+LAF GF +
Sbjct: 161 NQDPIFTNNKLPDGNEPGYPGGIFDPFGWSKGDIK--SLKLKEIKNGRLAMLAFAGF-IG 217
Query: 210 QSAYPGTGPLENLATH 225
Q+ GT PL+NL+TH
Sbjct: 218 QAYTTGTTPLKNLSTH 233
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG+P + ++ I + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGSPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL H+ADP NN
Sbjct: 239 PIENLFDHIADPVANN 254
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL+G GD+G+D L E R +E E+IH RWAML G L PE L
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME------ 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEV 186
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 187 TDP---IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 242
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 243 NLNDHLADPVANN 255
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PVQNLYDHVADPVANN 253
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL H+ADP NN
Sbjct: 239 PIENLFDHIADPVANN 254
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 105/199 (52%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
+ GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 110 LGNWVQAQEWAAVPGGQAT-------YLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
N V+ E G YLG P + ++ I + + + VE R
Sbjct: 120 R-NGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP YPGG+FDPLG + DP+ F E KVKE+K GRLA+ + GF V Q+
Sbjct: 179 GPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSMFGFFV-QAIVT 234
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENLA H+ADP +NN
Sbjct: 235 GKGPLENLADHIADPVNNN 253
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 43 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 101
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G +W +A GG YLG + ++ I + + + VE R
Sbjct: 102 GVKFGEASWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP 160
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPL + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 161 LGEVTDP---IYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 216
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLA+P +NN
Sbjct: 217 GPLENLADHLAEPVNNN 233
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 70 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 129
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 130 FGEAVWFKAGAQIFAEGG-LNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 188
Query: 162 --DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 189 GLDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPI 244
Query: 220 ENLATHLADP 229
ENL+ HLA+P
Sbjct: 245 ENLSDHLANP 254
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 108/191 (56%), Gaps = 27/191 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG PPYLDG+ GD+GFDPLRLG P+ L +E+EL++ RWAM A GIL +A+
Sbjct: 38 WLPGTQPPPYLDGTMAGDYGFDPLRLGANPDTLPYLQEAELMNGRWAMHATAGILFTDAV 97
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDP 163
GL W +A E A LG W L T++ + + +AF+E R + +
Sbjct: 98 GLPKWWEAGEAA---------LGD---W-NLQTLVAFQVVIMAFLEAARIRGFMTTGQSG 144
Query: 164 EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+P FDP G Q E +VKE+KNGRLA+++F+G V Q A GT PLE L
Sbjct: 145 VIGNFP---FDPTG-----QDSPEMRVKEVKNGRLAMMSFLGM-VSQYAVTGTSPLEGLK 195
Query: 224 THLADPWHNNI 234
H+A+P NI
Sbjct: 196 AHMANPAGVNI 206
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 32 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNG 91
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 92 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 150
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 151 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 206
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 207 PIENLFDHLADPTANN 222
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGL-DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 185
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 186 VDP---LYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 241
Query: 221 NLATHLADPWHNN 233
NLA LADP +NN
Sbjct: 242 NLADPLADPVNNN 254
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 113/216 (52%), Gaps = 31/216 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YL G GD+G+DPL LG P L+ Y++SEL H RWAML V G+LV E
Sbjct: 23 WAPGVVAPEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQE-- 80
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ + G L P + +L EF+ + +VE +R S+
Sbjct: 81 -----IVKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGSVN 135
Query: 161 KDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP K YPGG FDP GFSK F+E + KEIKNGRLA++A++ F +Q
Sbjct: 136 EDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--DFKELQTKEIKNGRLAMIAYMAFILQAQ 193
Query: 212 AYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 243
A G GPL L+ HL++P+ N NIG +P +
Sbjct: 194 A-TGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSV 228
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 43 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 101
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG + ++ I + + + VE R
Sbjct: 102 GVKFGEACWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP 160
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPL + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 161 LGEVTDP---IYPGGSFDPLALADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 216
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 217 GPLENLADHLADPVNNN 233
>gi|380504948|gb|AFD62761.1| LHCB, partial [Citrus sinensis]
Length = 169
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 96/145 (66%), Gaps = 4/145 (2%)
Query: 80 NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTL 139
L+R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 26 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SL 82
Query: 140 PTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K E ++ EIK+ RLA
Sbjct: 83 TTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLA 142
Query: 200 LLAFVGFCVQQSAYPGTGPLENLAT 224
++AF+ F + Q+A+ G GP+ +AT
Sbjct: 143 MVAFLIFGI-QAAFTGKGPISFVAT 166
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVGLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPTANN 254
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 125/258 (48%), Gaps = 34/258 (13%)
Query: 6 LMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPG 65
L+ G A P SS+ FT S A++N K W + YLDGS PG
Sbjct: 27 LLLGGKALVLPPYFSQSSRRTSFTVRS-QASSNKPVKQGDRQLWFASDQSLSYLDGSLPG 85
Query: 66 DFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
D+GFDPL L + PE + E E+I+ R+AML G + PE LG + +
Sbjct: 86 DYGFDPLGLMD-PEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQE-- 142
Query: 120 AAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD------ 162
A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 143 TALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLE 202
Query: 163 -----PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q G
Sbjct: 203 KFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFI-QGLVTGV 261
Query: 217 GPLENLATHLADPWHNNI 234
GP +NL HLADP HNN
Sbjct: 262 GPFQNLLDHLADPVHNNF 279
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATRVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PVQNLYDHVADPVANN 253
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 47 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 106
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 107 GEAVWFKAGSQIFAEGG-LNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 165
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 166 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 221
Query: 221 NLATHLADP 229
NL HLA+P
Sbjct: 222 NLDDHLANP 230
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLA 227
GP+ENLA HLA
Sbjct: 243 GPIENLADHLA 253
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 109
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG + ++ L + + + E R+
Sbjct: 110 GEAVWFKAGAQIFAEGGL-NYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 168
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 169 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 224
Query: 221 NLATHLADPWHNN 233
NL HLA+P N
Sbjct: 225 NLDDHLANPTAVN 237
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+ +D L PE + +E E+IH RWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP +NN
Sbjct: 239 PIENLFDHLADPANNN 254
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 107/196 (54%), Gaps = 28/196 (14%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ 117
+LDGS PGDFGFDP LG P+ L+ + ++ELIH RWAMLAV GI++PE L +++
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 137
Query: 118 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPE----- 164
W G Y T+ V + + + + E +R S++ +P+
Sbjct: 138 SW--YDAGSREYFADST------TLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKV 189
Query: 165 ----KKKYPGGA-FDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
YPGG FD + + + P+ + KEIKNGRLA+LAF+GFC Q+ Y P
Sbjct: 190 NPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF-QATYTSQDP 248
Query: 219 LENLATHLADPWHNNI 234
+ENL HLADP H N+
Sbjct: 249 IENLMAHLADPGHCNV 264
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE--------A 107
P YL G PGD+G+D L PE + Y+E ELIH RWAML G + PE +
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 108 LGLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
LG W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 105 LGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 162
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
K +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 163 KGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 221
Query: 222 LATHLADPWHNN 233
A H+ADP+ N
Sbjct: 222 WAEHVADPFSVN 233
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 120/231 (51%), Gaps = 37/231 (16%)
Query: 37 ANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------S 87
A AT AD W + YLDG+ PGDFGFDPL L + PE + E
Sbjct: 36 AEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYG 94
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILV 144
E+ + R AM+ V G++ PE LG V A+ A+P Q + GT W T+ V
Sbjct: 95 EVFNGRTAMMGVVGMVAPELLGKLGLVPAE--TAIPWFQTGVIPPAGTYTYWADPYTLFV 152
Query: 145 IEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGG-AFDPLGF-SKDPQ 183
E + F EH+R SM K + YPGG F+PLGF +K
Sbjct: 153 FELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEA 212
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ +E K+KEIKNGRLA+LAF+GF V Q+ + G GP++NL HLADP HNNI
Sbjct: 213 EMKELKLKEIKNGRLAMLAFLGFSV-QALFTGVGPVQNLLDHLADPVHNNI 262
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 112/216 (51%), Gaps = 31/216 (14%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YL G GD+G+DPL LG P L+ Y++SEL H RWAML V G+LV E
Sbjct: 35 WAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQE-- 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ + G L P + +L EF+ + +VE +R S+
Sbjct: 93 -----IVKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGSVN 147
Query: 161 KDPEKK---------KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP K YPGG FDP GFSK +E + KEIKNGRLA++A++ F +Q
Sbjct: 148 EDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--NLKELQTKEIKNGRLAMIAYMAFILQAQ 205
Query: 212 AYPGTGPLENLATHLADPWHN----NIGDVIIPRGI 243
A G GPL L+ HL++P+ N NIG +P +
Sbjct: 206 A-TGKGPLAALSAHLSNPFGNNILKNIGTCTVPHSV 240
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 30 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 89
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG V ++ L + + + E R+
Sbjct: 90 GEAVWFKAGSQIFAEGG-LNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 148
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 149 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 204
Query: 221 NLATHLADP 229
NL HLA+P
Sbjct: 205 NLDDHLANP 213
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLA 227
GP+ENLA HLA
Sbjct: 243 GPIENLADHLA 253
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 103/195 (52%), Gaps = 17/195 (8%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
+ P YL G PGD+G+D L PE Y+E ELIH RWAML G + PE L
Sbjct: 48 DDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAMLGALGCVTPELLSKYA 107
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS---- 158
G W +A GG YLG V ++ IL + + + E R
Sbjct: 108 GVEFGEAVWFKAGAQIFADGG-LDYLGNSSLVHAQSILAILGCQVVLMGGAEAFRVNGGP 166
Query: 159 MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
+ +D +K +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP
Sbjct: 167 LGEDLDKL-HPGGAFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGP 224
Query: 219 LENLATHLADPWHNN 233
+EN A H+ADP +N
Sbjct: 225 VENWAEHIADPSGSN 239
>gi|356568441|ref|XP_003552419.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 278
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 48/220 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL-----------RLGEVPENL---------------- 81
W P P +LDGS GD GFDP L + +NL
Sbjct: 60 WFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDVIGTRVEVA 119
Query: 82 ----------------ERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
+R++E ELIH RWAML G LV EAL W A + V G
Sbjct: 120 DVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGALGALVVEALTGVAWQDAGKVELVEG- 178
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ +L T++ IE + I ++E QR+ E DPEK+ YPGG FDPLG + DP++
Sbjct: 179 -SSYLGLPLPF-SLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEE 236
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
++ EIK+ RLA++ F+ F + Q+A G GP+ LAT
Sbjct: 237 KARLQLAEIKHSRLAMVVFLIFAI-QAAVTGKGPISFLAT 275
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 101/200 (50%), Gaps = 24/200 (12%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-- 109
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 110 ---LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSI---------AFVEHQR 157
G V Q W Q +G W T + E S + + R
Sbjct: 122 GVKFGEAVWVQGW--FTDLQRRRIGPT--WATPSLVHAQEHFSHLGYSSYPHGSLLRATR 177
Query: 158 SMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
P E YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+
Sbjct: 178 VPGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIV 236
Query: 214 PGTGPLENLATHLADPWHNN 233
G GPLENLA HLADP +NN
Sbjct: 237 TGKGPLENLADHLADPVNNN 256
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 98/191 (51%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE RY+E ELIH RWAML G + PE L
Sbjct: 57 PGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNGVPF 116
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG + ++ L + + + VE R + P +
Sbjct: 117 GEAVWFKAGAQIFQEGG-LNYLGNSSLIHAQSILATLACQVILMGLVEGYR-VNGGPAGE 174
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG AFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ NL
Sbjct: 175 GLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIANL 233
Query: 223 ATHLADPWHNN 233
HL+DP NN
Sbjct: 234 DAHLSDPSGNN 244
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 101/191 (52%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 69 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGTPI 128
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM---EKDP 163
W +A GG YLG P V ++ L ++ + + +E R +
Sbjct: 129 VEPVWFKAGAQIFAEGG-LDYLGNPGLVHAQSILATLAVQVILMGAIEGYRVNGGPAGEG 187
Query: 164 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
K +PGG FDPLG ++DP F E KVKEIKNGRLA+ + GF V Q+ G GPL NL
Sbjct: 188 LDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLANL 246
Query: 223 ATHLADPWHNN 233
HLA P+ +N
Sbjct: 247 DEHLASPFTSN 257
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFPMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL H+ADP NN
Sbjct: 239 PIENLFDHIADPVANN 254
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 107/194 (55%), Gaps = 20/194 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P Y++G GD+G+DPL LG +E+Y+ E++H RWAML V G+LVPE L G N
Sbjct: 78 PAYMNGELAGDYGYDPLGLGN-KGGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTN 136
Query: 113 WVQAQEW--AAV---PGGQATYLGTPVPWGTLPTILVIEFLSIAF--VEHQRSMEKDPEK 165
A W AV P T+ G P P +P L + F F +E+ R + P
Sbjct: 137 IKGAVWWDSGAVLLDPSATLTWAGIPNP---VPLALAVIFEVAVFFLIENYRYQQDGPWG 193
Query: 166 KK----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
YPGG FDPLG + DP K +E KVKEIKNGRLA++AF+GF VQ GP
Sbjct: 194 TGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTK-EGPYA 252
Query: 221 NLATHLADPWHNNI 234
N + HLADP+ N
Sbjct: 253 NWSKHLADPFGYNF 266
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPF 109
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG + ++ L + + + E R+
Sbjct: 110 GEAVWFKAGAQIFAEGG-LNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 168
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP +PGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++
Sbjct: 169 LDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQ 224
Query: 221 NLATHLADP 229
NL HLA+P
Sbjct: 225 NLDDHLANP 233
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 110/215 (51%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + A+ A+P Q + GT W T+ V+E + F EH+R
Sbjct: 115 IAPEILGKAGLIPAE--TALPXXQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQ 172
Query: 158 ------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K YPGG F +PLGF KD + +E K+KE+KNGRLA
Sbjct: 173 DWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA 232
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 233 MLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 102/192 (53%), Gaps = 15/192 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P YL G PGD+G+D L PE RY+E E+IH RWAML G + PE L G N
Sbjct: 45 PSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAAN 104
Query: 113 WVQAQEWAA----VPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
+ +A + A G YLG V ++ +L+ + + + +E R + P +
Sbjct: 105 FGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGYR-VNGGPAGE 163
Query: 167 ----KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG AFDPLG + DP E KVKEIKNGRLA+++ GF + Q+ G GP+ENL
Sbjct: 164 ITDPIYPGEAFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGFFI-QAIVTGKGPIENL 222
Query: 223 ATHLADPWHNNI 234
HLA P N
Sbjct: 223 NDHLAAPGETNF 234
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 55 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 114
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 115 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 173
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 174 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 229
Query: 221 NLATHLADPWHNN 233
NLA LADP NN
Sbjct: 230 NLADRLADPVANN 242
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 100/183 (54%), Gaps = 15/183 (8%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-- 109
GEP P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE LG
Sbjct: 55 GEP-PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSY 113
Query: 110 ---LGN--WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ IL + L + +E R
Sbjct: 114 GVPFGEAVWFKAGAQIFQEGG-LDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGP 172
Query: 161 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ K YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 173 LGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 231
Query: 220 ENL 222
+NL
Sbjct: 232 QNL 234
>gi|87313187|gb|ABD37890.1| light-harvesting chlorophyll-a/b binding protein Lhcb4 [Mesostigma
viride]
gi|145079643|tpg|DAA05922.1| TPA_inf: chloroplast light-harvesting complex protein CP29
precursor Lhcb4 [Mesostigma viride]
Length = 306
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 122/239 (51%), Gaps = 61/239 (25%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRL-----------------------GEV-------- 77
++PG P YLDGS GD+G+D L L GE+
Sbjct: 79 FLPGITPPAYLDGSMIGDYGYDILGLAAPKEFLQYDVDGNDINAAVSAPGEIIGTIKKTG 138
Query: 78 PE-------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
PE ++ER++E+ELI+ RWAML V G L E NWV + G
Sbjct: 139 PEVDATPFQPYAEVFSIERFRETELINGRWAMLGVAGALAGEMQTGINWVDIGKVMLEQG 198
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQ- 183
+++ G P+PW T+ +++IE + + + E R+ E DPEK+ YPGG FDP GF+K +
Sbjct: 199 --SSFGGLPLPW-TMTQLVIIEVVLVGWAEILRNNELDPEKRLYPGGPFDPFGFTKASES 255
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRG 242
+ + K+ EIK+ RL ++A +GF VQ AY G GP++NLA DV+I RG
Sbjct: 256 RVNDLKLAEIKHARLGMMASLGFAVQY-AYTGAGPIKNLA------------DVLIGRG 301
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 98/191 (51%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L PE RY+E ELIH RWAML G + PE L
Sbjct: 56 PGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNGVPF 115
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG + ++ L + + + VE R + P +
Sbjct: 116 GEAVWFKAGAQIFQEGG-LNYLGNSSLIHAQSILATLACQVILMGLVEGYR-VNGGPAGE 173
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG AFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ NL
Sbjct: 174 GLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIANL 232
Query: 223 ATHLADPWHNN 233
HL+DP NN
Sbjct: 233 DAHLSDPSGNN 243
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRIGGGPL 182
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPL ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 238
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 239 PIENLFDHLADPVANN 254
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 123/250 (49%), Gaps = 44/250 (17%)
Query: 18 SVLSSSKSKFFT-AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
S SS K+ F A S P + W + YLDGS PGDFGFDPL L +
Sbjct: 30 SFSSSRKASFVVKAASTPPVKQGADRQL----WFASKQSLSYLDGSLPGDFGFDPLGLSD 85
Query: 77 VPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL 130
PE + E E+I+ R+AML V G + PE LG + + A+P Q +
Sbjct: 86 -PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPE--TALPWFQTGVI 142
Query: 131 ---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------------DPEK 165
GT W T+ V+E + F EH+R SM K DP
Sbjct: 143 PPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPA- 201
Query: 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +GF + Q G GP +NL
Sbjct: 202 --YPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFI-QGLVTGVGPFQNLLD 258
Query: 225 HLADPWHNNI 234
HLADP +NN+
Sbjct: 259 HLADPVNNNV 268
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 102/200 (51%), Gaps = 17/200 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE RY+E E+IH RWAML G + PE L
Sbjct: 46 PSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVAS 105
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG P + ++ +L+ + + +E R + P
Sbjct: 106 FGEAVWFKAGAQIFQEGG-LDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYR-VNGGPAG 163
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPG AFDPLG + DP F E KVKE+KNGRLA+++ GF V Q GP+EN
Sbjct: 164 EGLDALYPGEAFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFV-QGIVTKKGPIEN 222
Query: 222 LATHLADPWHNNIGDVIIPR 241
L HLA P N + P+
Sbjct: 223 LNDHLASPDATNFWAIYAPK 242
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 123/244 (50%), Gaps = 33/244 (13%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
++S+ K + V AAA + A W+ YLDGS PGD+GFDPL L + PE
Sbjct: 27 VASASQKKSSFVVKAAAAPPVKQGANRPLWVASSQSLSYLDGSLPGDYGFDPLGLSD-PE 85
Query: 80 NLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL--- 130
+ E E+I+ R+AML G + PE LG + A+ A+P Q +
Sbjct: 86 GTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAE--TALPWFQTGVIPPA 143
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGG 171
GT W T+ V+E + F EH+R SM K YPGG
Sbjct: 144 GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGG 203
Query: 172 AF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 230
F +PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q G GP +NL HLADP
Sbjct: 204 PFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLADPV 262
Query: 231 HNNI 234
+NN+
Sbjct: 263 NNNV 266
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 95/187 (50%), Gaps = 28/187 (14%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK-- 121
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKK 166
V G+A + I + + + +E R DP
Sbjct: 122 -------TGVKFGEAVWF---------KAIWASQVVLMGLIEGYRVGGGPLGEGLDP--- 162
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HL
Sbjct: 163 LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHL 221
Query: 227 ADPWHNN 233
ADP NN
Sbjct: 222 ADPTANN 228
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 99/191 (51%), Gaps = 16/191 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE +RY+E ELIH RWAML G PE L
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKF 113
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
G W +A GG YLG P V + ++ + + +E R + P +
Sbjct: 114 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR-VNGGPAGE 171
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPG +FDPLG + DP F E KVKEIKNGRLA + GF V Q+ G GP++NL
Sbjct: 172 GLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNL 230
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 231 DDHLANPTVNN 241
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 123/250 (49%), Gaps = 44/250 (17%)
Query: 18 SVLSSSKSKFFT-AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE 76
S SS K+ F A S P + W + YLDGS PGDFGFDPL L +
Sbjct: 30 SFSSSRKASFVVKAASTPPVKQGADRQL----WFASKQSLSYLDGSLPGDFGFDPLGLSD 85
Query: 77 VPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL 130
PE + E E+I+ R+AML V G + PE LG + + A+P Q +
Sbjct: 86 -PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPE--TALPWFQTGVI 142
Query: 131 ---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------------DPEK 165
GT W T+ V+E + F EH+R SM K DP
Sbjct: 143 PPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPA- 201
Query: 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +GF + Q G GP +NL
Sbjct: 202 --YPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFI-QGLVTGVGPFQNLLD 258
Query: 225 HLADPWHNNI 234
HLADP +NN+
Sbjct: 259 HLADPVNNNV 268
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 104/189 (55%), Gaps = 17/189 (8%)
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--------GL 110
L G PGD+G+D L PE ++Y+E+ELIH RWAML G + PE L G
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 111 GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK- 167
W +A GG YLG+P + ++ I++ + + + +E R + P +
Sbjct: 61 SVWFRAGAQIFKDGG-LDYLGSPALIHAQSIGAIVISQVILMGLIEGYR-VNGGPAGEGL 118
Query: 168 ---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
YPG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN A
Sbjct: 119 DPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPVENWAE 177
Query: 225 HLADPWHNN 233
H+ADP+ N
Sbjct: 178 HVADPFTAN 186
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P Y+E+E+IH RWAML G + PE L +
Sbjct: 133 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 192
Query: 113 -----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
W +A GG YLG P V ++ IL + + + E R + P
Sbjct: 193 IAEPVWFKAGSQIFAEGGL-DYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNGGPAG 250
Query: 166 KKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF VQ A G GP+EN
Sbjct: 251 EGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIA-TGKGPVEN 309
Query: 222 LATHLADP 229
A H+ADP
Sbjct: 310 WAEHIADP 317
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 103/194 (53%), Gaps = 16/194 (8%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 17 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 76
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 163
G W +A GG YLG P V ++ I + + + F+E R + P
Sbjct: 77 IKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFIEGYR-VGGGP 134
Query: 164 EKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+
Sbjct: 135 LGEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPV 193
Query: 220 ENLATHLADPWHNN 233
ENL H+ADP +NN
Sbjct: 194 ENLFDHIADPVNNN 207
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P Y+E+E+IH RWAML G + PE L +
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 205
Query: 113 -----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
W +A GG YLG P V ++ IL + + + E R + P
Sbjct: 206 IAEPVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNGGPAG 263
Query: 166 KKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF VQ A G GP+EN
Sbjct: 264 EGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIA-TGKGPVEN 322
Query: 222 LATHLADP 229
A H+ADP
Sbjct: 323 WAEHIADP 330
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 122/247 (49%), Gaps = 35/247 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S +S S ++ + V A+ + A W + YLDGS PGDFGFDPL L +
Sbjct: 25 SRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSD- 83
Query: 78 PENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYL 130
PE + E E+I+ R+AML G + PE LG + Q A G
Sbjct: 84 PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPA 143
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------------DPEKKKY 168
GT W T+ V+E + F EH+R SM K DP Y
Sbjct: 144 GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---Y 200
Query: 169 PGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
PGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q+ G GP +NL HLA
Sbjct: 201 PGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLA 259
Query: 228 DPWHNNI 234
DP +NN+
Sbjct: 260 DPVNNNV 266
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE RY+E ELIH RWAML G + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG V ++ IL + + + +E R + P
Sbjct: 114 FGESVWFKAGSQIFQEGG-LDYLGNANLVHAQSILAILGCQVVLMGAIEAYR-VNGGPLG 171
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPG FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 172 EGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFV-QAVVTGKGPIEN 230
Query: 222 LATHLADPWHNN 233
A H+ADP+ N
Sbjct: 231 WAEHVADPFSVN 242
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL----- 110
P YL G PGD+G+D L P RY+E ELIH RWAML G +VPE L
Sbjct: 46 PEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLGALGCVVPELLAKNGTPL 105
Query: 111 ---GNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP-- 163
G W +A A YLG P + ++ L + + + E R P
Sbjct: 106 PDGGVWFKAGA-AIFADDGLNYLGNPNLIHAQSILATLAFQVVVMGAAESFRFNGGAPGG 164
Query: 164 ----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ YPG FDP+G ++DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 165 FLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPI 223
Query: 220 ENLATHLADPWHNN 233
NL HLADP NN
Sbjct: 224 ANLDAHLADPSVNN 237
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 113/220 (51%), Gaps = 39/220 (17%)
Query: 40 TSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
T A+ ++ PG P +LDG+ PGD+GFDPL LGE L Y+++EL+H RWAML V
Sbjct: 35 TVAAAVRPNYFPGSTPPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGV 94
Query: 100 PGILVPEALG-------LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF 152
G+ PE G L NW A + Y+ T+ V++ + +
Sbjct: 95 AGMAAPEIFGNPLVDGPLPNWADAPFYDG-------YIADA------NTLFVVQMFLMNW 141
Query: 153 VEHQR--------SMEKDP--EKKK-------YPGGA-FDPLGFSKDPQKFEEYKVKEIK 194
E +R S+ DP E +K YPGG F+P+G +K ++ + + KEI
Sbjct: 142 AEVRRWQDMKNPGSVHADPYDESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIA 201
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
NGRLA++A +G C Q GTGP+ NL HLADP H I
Sbjct: 202 NGRLAMVAAMG-CFIQHDVTGTGPVANLKAHLADPAHATI 240
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 127/240 (52%), Gaps = 32/240 (13%)
Query: 12 ATTAFPSVLSSSKSKFFTAVSLPAAANATSKY--AMSADWMPGEP-RPPYLDGSAPGDFG 68
A +A + + S++ F P +A A+ K A W+ P +LDG+ PGDFG
Sbjct: 14 AVSARKANFAGSRASFAAPAKAPVSARASLKVQAANRELWLKDSTVAPAHLDGTLPGDFG 73
Query: 69 FDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN-WVQAQEWAAVPGGQA 127
FDPL LG PE L+ Y+E+EL++ RWAM+AV GI E LG+G W +A G A
Sbjct: 74 FDPLGLGADPERLKYYQEAELMNARWAMMAVAGICTTEILGIGGPWYEA--------GAA 125
Query: 128 TYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDP 182
Y +P + +L ++F + +E +R + K + +P +DP+G + D
Sbjct: 126 EY---DLP---INALLAVQFPVMGILELRRIRGWLATGKSGVNETFP---WDPMGMNGD- 175
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRG 242
+ +KE+KNGRLA++AFVG VQ Y TGP+ L H+ DP+ N+ I+ G
Sbjct: 176 ----QMALKEVKNGRLAMIAFVGIVVQAIVYR-TGPVAALKDHITDPFGCNMATNIMHIG 230
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTDKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PVQNLYDHVADPVANN 253
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 118/248 (47%), Gaps = 45/248 (18%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
+SS KS F AA+ K W + YLDGS PGDFGFDPL L + PE
Sbjct: 32 VSSRKSSFVVR----AASTPPVKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGLSD-PE 86
Query: 80 NLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV---QAQEWAAV----PGGQ 126
+ E E+I+ R+AML G + PE LG + A W P G
Sbjct: 87 GTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPAGT 146
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKK 167
+Y P T+ V E + F EH+R SM K +
Sbjct: 147 YSYWADPY------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKYLGGSGEPA 200
Query: 168 YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HL
Sbjct: 201 YPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHL 259
Query: 227 ADPWHNNI 234
ADP HNNI
Sbjct: 260 ADPVHNNI 267
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 118/248 (47%), Gaps = 45/248 (18%)
Query: 20 LSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE 79
+SS KS F AA+ K W + YLDGS PGDFGFDPL L + PE
Sbjct: 32 VSSRKSSFVVR----AASTPPVKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGLSD-PE 86
Query: 80 NLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV---QAQEWAAV----PGGQ 126
+ E E+I+ R+AML G + PE LG + A W P G
Sbjct: 87 GTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPAGT 146
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKK 167
+Y P T+ V E + F EH+R SM K +
Sbjct: 147 YSYWADPY------TLFVFEMALMGFAEHRRLQDWAKPGSMGKQYFLGFEKYLGGSGEPA 200
Query: 168 YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q G GP +NL HL
Sbjct: 201 YPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHL 259
Query: 227 ADPWHNNI 234
ADP HNNI
Sbjct: 260 ADPVHNNI 267
>gi|384246706|gb|EIE20195.1| chlorophyll a/b-binding protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 203
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 103/187 (55%), Gaps = 19/187 (10%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YLDGS PGD GFDP+RL P L E EL + R AMLAV GIL+ EA
Sbjct: 1 WYPGAEAPSYLDGSLPGDRGFDPMRLAANPSTLPWLVEGELYNGRVAMLAVAGILLVEAA 60
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF-VEHQRSMEKDPEKKK 167
GLG W W+A + P+P+ P ++V + AF V+ + +K E
Sbjct: 61 GLGPW-----WSA-----PFRVDWPLPY--WPGVVVFHAIYAAFEVKRFDNFQKYGETGL 108
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
FDPL D + + E++NGRLA+LAF+GF Q+A G GPLENL H+A
Sbjct: 109 LGFVPFDPLNMRDDYK-----RQSEVRNGRLAMLAFIGFA-SQAANTGKGPLENLKDHIA 162
Query: 228 DPWHNNI 234
DP HNNI
Sbjct: 163 DPTHNNI 169
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P Y+E+E+IH RWAML G + PE L +
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 205
Query: 113 -----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
W +A GG YLG P V ++ IL + + + E R + P
Sbjct: 206 IAEPVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNGGPAG 263
Query: 166 KKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP+EN
Sbjct: 264 EGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYV-QAISTGKGPVEN 322
Query: 222 LATHLADPWHNN 233
A H+ADP N
Sbjct: 323 WAEHIADPSGVN 334
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D + PE + +E E+IHCRWAML G + PE L
Sbjct: 64 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNG 123
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR---SME 160
G W +A GG Y G P + ++ I + + + +E R
Sbjct: 124 LKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTL 182
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ PGGAFDPLG + DP+ E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 183 GEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIE 241
Query: 221 NLATHLADPWHNN 233
NL HLADP NN
Sbjct: 242 NLYDHLADPVANN 254
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + Y+E ELIH RWAML G + PE L
Sbjct: 45 PSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 105 FGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 162
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 163 EGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 221
Query: 222 LATHLADPWHNN 233
A H+ADP+ N
Sbjct: 222 WAEHVADPFSVN 233
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + Y+E ELIH RWAML G + PE L
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 105 FGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 162
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 163 EGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 221
Query: 222 LATHLADPWHNN 233
A H+ADP+ N
Sbjct: 222 WAEHVADPFSVN 233
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQA 116
PGD+G+D L PE + +E E+IHCRWAML G + PE L G W +A
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKA 63
Query: 117 QEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKY 168
GG YLG P + ++ I + + + +E R DP Y
Sbjct: 64 GAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LY 119
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HLAD
Sbjct: 120 PGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLAD 178
Query: 229 PWHNN 233
P NN
Sbjct: 179 PTANN 183
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 132/275 (48%), Gaps = 48/275 (17%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMP-----GEPR 55
MA+ L+S T A +V S F A SLP++ + K + A P G R
Sbjct: 1 MATQALVSSSSLTFAAEAVRQS-----FRARSLPSSVGCSRKGLVRAAATPPVKQGGVDR 55
Query: 56 P---------PYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVP 100
P YLDGS PGD+GFDPL L + PE + E E+I+ R+AML
Sbjct: 56 PLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAV 114
Query: 101 GILVPEALG-LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
G + PE LG +G Q A G GT W T+ V+E + F EH+R
Sbjct: 115 GAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQ 174
Query: 158 ------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K YPGG F+PLGF KD + +E K+KE+KNGRLA
Sbjct: 175 DWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA 234
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ + Q G GP +NL H+ADP +NN+
Sbjct: 235 MLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNNV 268
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 61 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 120
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 163
G W +A GG YLG P V ++ I ++ + + F+E R
Sbjct: 121 IKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGGGPL 179
Query: 164 EKKK---YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
++ YPGGAFDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 180 DEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPVE 238
Query: 221 NLATHLADPWHNN 233
NL L DP +NN
Sbjct: 239 NLFDQLRDPGNNN 251
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P Y+E+E+IH RWAML G + PE L +
Sbjct: 145 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 204
Query: 113 -----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
W +A GG YLG P V ++ IL + + + E R + P
Sbjct: 205 IAEPVWFKAGSQIFAEGG-LDYLGNPSLVHAQSILAILACQVILMGGAEAYR-VNGGPAG 262
Query: 166 KKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP+EN
Sbjct: 263 EGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYV-QAISTGKGPVEN 321
Query: 222 LATHLADP 229
A H+ADP
Sbjct: 322 WAEHIADP 329
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 97/193 (50%), Gaps = 17/193 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G GD+G+D L P+ +Y+E E+IH RWAML G + PE L
Sbjct: 47 PAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGVPF 106
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE-- 164
G W +A GG YLG V ++ L ++ L + E R+ P
Sbjct: 107 GEAVWFKAGAQIFQDGG-LNYLGNENLVHAQSILATLAVQVLLMGAAESYRANGGAPGGF 165
Query: 165 ----KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
YPGGAFDPLG + DP E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 166 GEDLDSLYPGGAFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIA 224
Query: 221 NLATHLADPWHNN 233
NL HL+DP NN
Sbjct: 225 NLDAHLSDPSGNN 237
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 126/269 (46%), Gaps = 52/269 (19%)
Query: 13 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPL 72
TTA ++ K T+ + KY A W+P RP +LDGS PGD GFDPL
Sbjct: 17 TTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPL 76
Query: 73 RLGE--------VPEN-------------------------------------LERYKES 87
L + V EN L R++E
Sbjct: 77 GLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFREC 136
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
ELIH RWAMLA G LV EA +WV+A V A+Y G +P+ ++ ++ IE
Sbjct: 137 ELIHGRWAMLACLGALVAEATTGVSWVEA---GKVELDGASYAGLSLPF-SITQLIWIEV 192
Query: 148 LSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGF 206
+ + E R+ E +PEK+ YPGG FDPL S+D ++ K EIK+ RLA+++F G+
Sbjct: 193 ILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 252
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNIG 235
V Q+ G G L +LA AD +N G
Sbjct: 253 GV-QALSTGEGALGSLA-KFADGLNNGKG 279
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 117/255 (45%), Gaps = 32/255 (12%)
Query: 5 TLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--------- 55
T+ + G AT L ++S ++ A K+ MS + G R
Sbjct: 4 TVTAAGSATVLKTRFLGQTRS---SSALRDVVAMGNGKFTMSNELWYGPDRVKYLGPFSA 60
Query: 56 --PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNW 113
P YL+G PGD+G+D L PE R + E+IH RWAML G + PE L W
Sbjct: 61 QTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV--LEKW 118
Query: 114 VQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD 162
V+ W G YLG P V ++ +L + L + VE R D
Sbjct: 119 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLD 178
Query: 163 ---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF + Q+ G GP
Sbjct: 179 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFI-QAIVTGKGP 237
Query: 219 LENLATHLADPWHNN 233
LENL HL DP NN
Sbjct: 238 LENLLDHLDDPVANN 252
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 110/215 (51%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + A+ A+P Q + GT W T+ V+E + F EH+R
Sbjct: 115 IAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQ 172
Query: 158 ------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K YPGG F +PLGF KD + +E K+KE+KNGRLA
Sbjct: 173 DWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA 232
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 233 MLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 109/198 (55%), Gaps = 20/198 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P Y++G GD+G+DPL LG +E+Y+ E++H RWAML V G+LVPE L G N
Sbjct: 85 PAYMNGELAGDYGYDPLGLGN-KGGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTN 143
Query: 113 WVQAQEW--AAV---PGGQATYLGTPVPWGTLPTILVIEFLSIAF--VEHQRSMEKDPEK 165
A W AV P T+ G P P +P L + F F +E+ R + P
Sbjct: 144 IKGAVWWDSGAVLLDPSATLTWAGIPNP---VPLALAVIFEVAVFFLIENYRYQQDGPWG 200
Query: 166 KK----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
YPGG FDPLG + DP K +E KVKEIKNGRLA++AF+GF VQ GP
Sbjct: 201 TGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFV-TKEGPYA 259
Query: 221 NLATHLADPWHNNIGDVI 238
N + HLADP+ N ++
Sbjct: 260 NWSKHLADPFGYNFLTIL 277
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE RY+E ELIH RWAML G + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG V ++ IL + + + +E R + P
Sbjct: 114 FGESVWFKAGSQIFQEGG-LDYLGNANLVHAQSILAILGCQVVLMGAIEAYR-VNGGPLG 171
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPG FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 172 EGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAVVTGKGPIEN 230
Query: 222 LATHLADPWHNN 233
A H+A+P+ N
Sbjct: 231 WAEHVANPFSVN 242
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG +LG P + ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 187 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 242
Query: 217 GPLENLATHLADP 229
GP+ENLA HLADP
Sbjct: 243 GPIENLADHLADP 255
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G PE L
Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLENLATHLADPWHNN 233
P++NL H+ADP NN
Sbjct: 238 PIQNLYDHVADPVANN 253
>gi|356539957|ref|XP_003538459.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 282
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 112/220 (50%), Gaps = 48/220 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL-----------RLGEVPENL---------------- 81
W P P +LDGS GD GFDP L + +NL
Sbjct: 64 WFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNIAGDVIGTRVEVA 123
Query: 82 ----------------ERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
+R++E ELIH RWAML G L EAL W A + V G
Sbjct: 124 EVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGSLGALAVEALTGVAWQDAGKVELVEG- 182
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++YLG P+P+ +L T++ IE + I ++E QR+ E DPEK+ YPGG FDPLG + DP++
Sbjct: 183 -SSYLGLPLPF-SLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEE 240
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
++ EIK+ RLA++ F+ F + Q+A G GP+ LAT
Sbjct: 241 KARLQLAEIKHSRLAMVVFLIFAI-QAAVTGKGPISFLAT 279
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 101/191 (52%), Gaps = 15/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 70 PSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAMLGALGCVTPELLAKNGTPI 129
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM---EKDP 163
W +A GG YLG P V ++ L + + + +E R +
Sbjct: 130 AEPVWFKAGAQIFQEGG-LDYLGNPGLVHAQSILATLACQVILMGAIEGFRVNGGPAGEG 188
Query: 164 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
K +PGG FDPL ++DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 189 LDKLHPGGPWFDPLALAEDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIENL 247
Query: 223 ATHLADPWHNN 233
+HLA+P NN
Sbjct: 248 ESHLANPGVNN 258
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L P Y+E+E+IH RWAML G + PE L +
Sbjct: 130 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVP 189
Query: 113 -----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
W +A GG YLG P + ++ IL + + + E R + P
Sbjct: 190 IAEPVWFKAGSQIFAEGG-LDYLGNPSLIHAQSILAILACQVVLMGGAEAYR-VNGGPAG 247
Query: 166 KKY----PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ PGGAFDPLG + DP F E KVKEIKNGRLA+ + +GF VQ A G GP+EN
Sbjct: 248 EGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIA-TGKGPVEN 306
Query: 222 LATHLADP 229
A H+ADP
Sbjct: 307 WAEHIADP 314
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 99/193 (51%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 65 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG 124
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK-- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 125 IKFGEAVWFKAGSQIFKEGG-LDYLGNPNLVHAQSILAIWASQVILMGAVEGYRVGGGPL 183
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ K YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF Q+ G GP+E
Sbjct: 184 GEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFT-QAIVTGKGPIE 242
Query: 221 NLATHLADPWHNN 233
NL HL +P NN
Sbjct: 243 NLLDHLDNPTVNN 255
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 121/247 (48%), Gaps = 35/247 (14%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEV 77
S +S S ++ + V A+ + A W + YLDG PGDFGFDPL L +
Sbjct: 25 SRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSD- 83
Query: 78 PENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYL 130
PE + E E+I+ R+AML G + PE LG + Q A G
Sbjct: 84 PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPA 143
Query: 131 GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------------DPEKKKY 168
GT W T+ V+E + F EH+R SM K DP Y
Sbjct: 144 GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---Y 200
Query: 169 PGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
PGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q+ G GP +NL HLA
Sbjct: 201 PGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLA 259
Query: 228 DPWHNNI 234
DP +NN+
Sbjct: 260 DPVNNNV 266
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 118/225 (52%), Gaps = 38/225 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGS-APGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
+ A A+W+PG P +L+ S PG+FGFDPL LG PE L + ESE +HCRWAML V
Sbjct: 33 RAAARANWLPGNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESERVHCRWAMLGVA 92
Query: 101 GILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--- 157
GILV E + + W + + +P+ + ++ E + +VE +R
Sbjct: 93 GILVQELVRPDVF-----W------YTSAVDVELPF-DITGLVAFELFVMHWVESRRGYD 140
Query: 158 -----SMEKDP---------EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAF 203
SM++DP + YPGG F P P EE KVKEIKNGRLA+LAF
Sbjct: 141 IKNPGSMDQDPIFSNFKLPSHEPGYPGGIFAPF----VPGSMEELKVKEIKNGRLAMLAF 196
Query: 204 VGFCVQQSAYPGTGPLENLATHLADPWHNNIGD--VIIP-RGIVP 245
+GF + + G PL L HL+DP + I V++P + IVP
Sbjct: 197 IGFTM-AAQISGLNPLAALGEHLSDPLNTTIFSKAVVVPGQAIVP 240
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 88
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 89 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 147
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG ++ P+ F E KVKE+KNGRLA+ + GF V + G GPLE
Sbjct: 148 VDP---LYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV-PAIVTGKGPLE 203
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 204 NLADHLADPVNNN 216
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + Y+E ELIH RWAML G + PE L
Sbjct: 26 PSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 85
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME---KD 162
G W +A GG YLG P V ++ IL + + + +E R +
Sbjct: 86 FGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGE 144
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+PG +FDPLG + DP F E K+KEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 145 GLDTLHPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYV-QAIVTGKGPIENW 203
Query: 223 ATHLADPWH 231
A H+ADP++
Sbjct: 204 ADHVADPFN 212
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 121/259 (46%), Gaps = 46/259 (17%)
Query: 5 TLMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP-- 51
T+ SCGI + AF +SS K + + A + T K + SA P
Sbjct: 2 TMASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWY 61
Query: 52 ------------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML
Sbjct: 62 GPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 120
Query: 100 PGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSI 150
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 121 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILM 179
Query: 151 AFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 180 GAVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 205 GFCVQQSAYPGTGPLENLA 223
GF V Q+ G GP+ENLA
Sbjct: 237 GFFV-QAIVTGKGPIENLA 254
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 99/193 (51%), Gaps = 14/193 (7%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G++ + PE R +E E+IH RWAML G + PE L
Sbjct: 27 EQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNG 86
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP 163
G W +A GG YLG P V ++ I + + + FVE
Sbjct: 87 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYGVGGGPL 145
Query: 164 E---KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K YPGGAF+PLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 146 GEGLDKVYPGGAFEPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 204
Query: 221 NLATHLADPWHNN 233
NL H+ADP NN
Sbjct: 205 NLFDHVADPVANN 217
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 41 SKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVP 100
+ + W+PG P YLDG+ P D+GFDPLRLG PE L +E+EL++ RWAM A
Sbjct: 36 DRIGVMGHWLPGTEPPSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATA 95
Query: 101 GILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE--HQRS 158
GIL +A+GL + +A E A LG W L T++ I+ + + F+E R
Sbjct: 96 GILFTDAVGLPKFWEAGEAA---------LGD---W-DLKTLVAIQVVVMGFLEAARIRG 142
Query: 159 MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
E FDP G Q KVKE+KNGRLA+++F+G V Q A GT P
Sbjct: 143 FMATGESGVVGNFPFDPTG-----QDSPAMKVKEVKNGRLAMMSFLGM-VSQYAVTGTSP 196
Query: 219 LENLATHLADPWHNNI 234
LE L H+A+P NI
Sbjct: 197 LEGLKAHMANPTGVNI 212
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 111/215 (51%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + + A+P + ++ GT W T+ V E + F EH+R
Sbjct: 118 IAPEILGKAGLIPQE--TALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQ 175
Query: 158 ------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K + YPGG F+PLGF KD + ++ K+KE+KNGRLA
Sbjct: 176 DWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLA 235
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ V Q+ G GP +NL HL DP HNNI
Sbjct: 236 MLAILGYFV-QALVTGVGPYQNLLDHLTDPVHNNI 269
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 101/190 (53%), Gaps = 17/190 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + Y+E ELIH RWAML G + PE L
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILAKYAGVS 89
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG P V ++ IL + + + +E R + P
Sbjct: 90 CGESVWFKAGSQIFQEGG-LDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 147
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+EN
Sbjct: 148 EGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPIEN 206
Query: 222 LATHLADPWH 231
A H+ADP++
Sbjct: 207 WADHVADPFN 216
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 117/246 (47%), Gaps = 39/246 (15%)
Query: 7 MSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGD 66
M C I + S L S +VS +A + A W PG P +LDGS PGD
Sbjct: 1 MDCSITSRVNTSALKSR------SVSRQSARASFVVKAQRDVWWPGVDAPAHLDGSLPGD 54
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
FGFDPL L PE + ++EL H RWAML V G++ P+ L W W + G+
Sbjct: 55 FGFDPLGLSVDPEMKKWMVQAELQHARWAMLGVAGMVGPD---LAPW-DTPSW--IEAGK 108
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP----------EKKKY 168
Y W + I+ + + E +R SM KDP Y
Sbjct: 109 FEY------WAPAGPLFFIQMAMMNWAEVRRWQDMKDPGSMNKDPLFGYNANDTNTDVGY 162
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG FD LG++K + + K+KEIKNGRLA++A G C Q A G PL NL +H+A+
Sbjct: 163 PGGLFDKLGYAK--KDLDTLKLKEIKNGRLAMVAIAG-CFVQGATTGVSPLTNLTSHIAN 219
Query: 229 PWHNNI 234
P NI
Sbjct: 220 PGAVNI 225
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 143/277 (51%), Gaps = 54/277 (19%)
Query: 4 NTLMSCGIATTAFPSVLSS----SKSKFFTAVSLPAA---ANATSKYAMSAD------WM 50
+T+ + +A+ + P+V+ ++ KF A AA A+ +K+ + A+ +
Sbjct: 21 STMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKAEKSDRQLFF 80
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILV 104
+ YLDGS PGDFG+DPL L + PE + + SE+IHCR+AML + G++
Sbjct: 81 SDKAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMAGMVA 139
Query: 105 PEALGLGNWVQAQ------EWAAVPG-GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR 157
PE LG + A+ + +P GQ Y +P+ + IE + + F E +R
Sbjct: 140 PEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPL------ALFWIEVVLMQFAELRR 193
Query: 158 SME-KDPEKKK------------------YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGR 197
+ + P + YPGGA F+ LG+ KD + + K+KE+KNGR
Sbjct: 194 WQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGR 253
Query: 198 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
LA++A +GF +Q A G GP +NL HLADP++NNI
Sbjct: 254 LAMVATLGFFIQAMA-TGEGPFQNLTDHLADPFNNNI 289
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 117/241 (48%), Gaps = 29/241 (12%)
Query: 21 SSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN 80
SS S+ AV A++ K W + YLDGS PGD+GFDPL L + PE
Sbjct: 43 SSESSRTSFAVRSQASSGKPVKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGLMD-PEG 101
Query: 81 LERYKE------SELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGTP 133
+ E E+I+ R+AML G + PE LG LG Q G GT
Sbjct: 102 PGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFRTGVIPPAGTY 161
Query: 134 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGG-AF 173
W T+ V+E + F EH+R SM K YPGG F
Sbjct: 162 DYWADPFTLFVLEMALMGFAEHRRLQDYRYPGSMSKQYFLGFEKYLGGSGNPSYPGGPLF 221
Query: 174 DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
+PLGF KD + +E K+KE+KNGRLA+LA VG+ + Q G GP +NL HLADP +NN
Sbjct: 222 NPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFI-QGLVTGVGPFQNLLDHLADPVNNN 280
Query: 234 I 234
+
Sbjct: 281 L 281
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 123/262 (46%), Gaps = 37/262 (14%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
A T S G + P S S A + P + + W + YLDG
Sbjct: 16 AEATRQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDR----PLWFASKQSLSYLDG 71
Query: 62 SAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQ 115
S PGD+GFDPL L + PE + E E+I+ R+AML G + PE LG +
Sbjct: 72 SLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIP 130
Query: 116 AQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-- 162
+ A+P + GT W T+ V E + F EH+R SM K
Sbjct: 131 QE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYF 188
Query: 163 ---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
+ YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q+
Sbjct: 189 LGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QAL 247
Query: 213 YPGTGPLENLATHLADPWHNNI 234
G GP +NL HLADP HNNI
Sbjct: 248 VTGVGPYQNLLDHLADPVHNNI 269
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 123/249 (49%), Gaps = 39/249 (15%)
Query: 17 PSVLSSSKSKFFT--AVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRL 74
P+V +S + F A S P ++ W YLDGS PGD+GFDPL L
Sbjct: 26 PAVSTSRRKSSFVVKATSTPPVKQGANR----PLWFASSQSLTYLDGSLPGDYGFDPLGL 81
Query: 75 GEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQAT 128
+ PE + E E+I+ R+AML G + PE LG + A+ A+P Q
Sbjct: 82 SD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAE--TALPWFQTG 138
Query: 129 YL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKK 166
+ GT W T+ V+E + F EH+R SM K +
Sbjct: 139 VIPPAGTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFSGSGEP 198
Query: 167 KYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
YPGG F+PLGF K+ + +E K+KEIKNGRLA+LA +G+ V Q G GP +NL H
Sbjct: 199 AYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDH 257
Query: 226 LADPWHNNI 234
LADP +NN+
Sbjct: 258 LADPVNNNV 266
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 29/193 (15%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN-WV 114
PP+LDG+ PGDFGFDPL LG P L+ Y+E+EL++ RWAM+AV GI +AL +G W
Sbjct: 61 PPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAVAGITTTDALNIGGPWY 120
Query: 115 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYP 169
+A G Y P +P +L ++F + +E +R + K +P
Sbjct: 121 EA--------GAGDY---DFP---IPALLAVQFPVMGILELKRIRGWLATGKSGVNSDFP 166
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
+DP+G + D VKEIKNGRLA++AFVG VQ Y TGP+ L H+ DP
Sbjct: 167 ---WDPMGMNNDAM-----AVKEIKNGRLAMIAFVGVVVQAIVYR-TGPVAALKDHVVDP 217
Query: 230 WHNNIGDVIIPRG 242
+ N+ I+ G
Sbjct: 218 FGCNMATNIMHIG 230
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 110/215 (51%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + + A+P + GT W T+ V E + F EH+R
Sbjct: 118 IAPEILGKAGLIPQE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQ 175
Query: 158 ------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K + YPGG F+PLGF KD + ++ K+KE+KNGRLA
Sbjct: 176 DWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLA 235
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ V Q+ G GP +NL HLADP HNNI
Sbjct: 236 MLAILGYFV-QALVTGVGPYQNLLDHLADPVHNNI 269
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 104/200 (52%), Gaps = 18/200 (9%)
Query: 48 DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA 107
D PR P G PGD+G+D L PE +RY+E ELIH R +L G++ PE
Sbjct: 67 DLQHQHPRLPT--GEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPEL 124
Query: 108 LGLGNWVQ---AQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR 157
L + ++ A W A G YLG P + + L ++ + + VE R
Sbjct: 125 LADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR 184
Query: 158 SMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
+ P + YPG AFDPLG + DP F E KVKEIKNGRLA+ A +GF V Q+
Sbjct: 185 -VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIV 242
Query: 214 PGTGPLENLATHLADPWHNN 233
G GP+ENL HLA+P NN
Sbjct: 243 TGKGPIENLTDHLANPAENN 262
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 106/222 (47%), Gaps = 27/222 (12%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A T KY MS D G R P YL+G PGD+G+D L PE + +
Sbjct: 33 AMGTGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNR 92
Query: 86 ESELIHCRWAMLAVPGILVPEALGLG--------NWVQAQEWAAVPGGQATYLGTP--VP 135
E+IH RWAML G + PE L W +A GG YLG P V
Sbjct: 93 ALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGG-LDYLGNPNLVH 151
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVK 191
++ +L + + + VE R D YPGG FDPLG + DP F E KVK
Sbjct: 152 AQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 211
Query: 192 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
EIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 212 EIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 252
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 124/262 (47%), Gaps = 37/262 (14%)
Query: 2 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDG 61
A T S G + P S S A ++P + + W + YLDG
Sbjct: 16 AEATRQSLGPRSLQSPFGFSRKASFLVKAAAIPPVKQGSDR----PLWFASKQSLSYLDG 71
Query: 62 SAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQ 115
S PGD+GFDPL L + PE + E E+I+ R+AML G + PE LG +
Sbjct: 72 SLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIP 130
Query: 116 AQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-- 162
+ A+P + GT W T+ V E + F EH+R SM K
Sbjct: 131 QE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYF 188
Query: 163 ---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
+ YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V ++
Sbjct: 189 LGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-RAL 247
Query: 213 YPGTGPLENLATHLADPWHNNI 234
G GP +NL HLADP HNNI
Sbjct: 248 VTGVGPYQNLLDHLADPVHNNI 269
>gi|116779436|gb|ABK21281.1| unknown [Picea sitchensis]
gi|116780920|gb|ABK21880.1| unknown [Picea sitchensis]
gi|116785937|gb|ABK23915.1| unknown [Picea sitchensis]
gi|116792210|gb|ABK26276.1| unknown [Picea sitchensis]
gi|224284045|gb|ACN39760.1| unknown [Picea sitchensis]
gi|224285097|gb|ACN40276.1| unknown [Picea sitchensis]
Length = 288
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 108/222 (48%), Gaps = 47/222 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+PG P +LDGS GD+GFDPL LG+ E
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 80 -------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
L+R++E ELIH RWAML V G L E W A + V G
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEG-- 186
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKF 185
++Y G +P+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G + D K
Sbjct: 187 SSYFGFSLPF-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKK 245
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+ K+ EIK+ RLA++AF+ F + Q+A GPL L
Sbjct: 246 DRLKLAEIKHARLAMVAFLIFAI-QAAVTSKGPLTLFVEFLG 286
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 119/259 (45%), Gaps = 46/259 (17%)
Query: 5 TLMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANATSKYAMSAD-------------W- 49
T+ +CGI + AF LSS K + + A + S+ M W
Sbjct: 2 TMATCGIGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSFASASPSPWY 61
Query: 50 ----------MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML
Sbjct: 62 GPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 120
Query: 100 PGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSI 150
G + PE L G W +A GG YLG P + ++ I + + +
Sbjct: 121 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVILM 179
Query: 151 AFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 180 GAVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 205 GFCVQQSAYPGTGPLENLA 223
GF V Q+ G GP+ENLA
Sbjct: 237 GFFV-QAIVTGKGPIENLA 254
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 96/184 (52%), Gaps = 20/184 (10%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNG 122
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I ++ + + FVE R
Sbjct: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 181
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 182 GEGLDP---IYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 237
Query: 218 PLEN 221
P+EN
Sbjct: 238 PIEN 241
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 114/265 (43%), Gaps = 41/265 (15%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS + + A A LS + AA + M D G R
Sbjct: 1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLG 60
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
P YL+G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 61 PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVL- 119
Query: 110 LGNWVQAQEWAAV---------------PGGQATYLGTP--VPWGTLPTILVIEFLSIAF 152
Q+W V G YLG P V ++ +L + L +
Sbjct: 120 -------QKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGL 172
Query: 153 VEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
VE R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 173 VEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV 232
Query: 209 QQSAYPGTGPLENLATHLADPWHNN 233
Q+ G GPLENL HL DP NN
Sbjct: 233 -QAIVTGKGPLENLFDHLDDPVANN 256
>gi|357461189|ref|XP_003600876.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
gi|355489924|gb|AES71127.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
Length = 278
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 113/220 (51%), Gaps = 48/220 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGE-----------VPENL---------------- 81
W PG P +LDG+ GD GFDPL L + + +NL
Sbjct: 60 WFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVEST 119
Query: 82 ----------------ERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125
+R++E E+IH RWAML G L EA W A + V G
Sbjct: 120 DVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEG- 178
Query: 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQK 184
++Y G +P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG FDPLG + DP++
Sbjct: 179 -SSYFGFSLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEE 236
Query: 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
E ++ EIK+ RLA++ F+ F + Q+A G GP+ +AT
Sbjct: 237 KERLQLAEIKHSRLAMVVFLIFAI-QAAVTGKGPIGFIAT 275
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 122/249 (48%), Gaps = 40/249 (16%)
Query: 18 SVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRL 74
S SSS K VS A AT AD W + YLDGS PGD+GFDPL L
Sbjct: 27 SFQSSSSRK----VSFAVRAEATPPAKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGL 82
Query: 75 GEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQAT 128
+ PE + E E+I+ R+AML G + PE LG + + A+P +
Sbjct: 83 SD-PEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPE--TALPWFKTG 139
Query: 129 YL---GTPVPWGTLPTILVIEFLSIAFVEHQR----------------SMEKDPEKKK-- 167
+ GT W T+ V E + F EH+R EK E
Sbjct: 140 VIPPAGTYDYWADPYTLFVFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNP 199
Query: 168 -YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225
YPGG F+PLGF KD + ++ K+KE+KNGRLA+LA +G+ V Q+ G GP +NL H
Sbjct: 200 IYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV-QALVTGVGPYQNLLDH 258
Query: 226 LADPWHNNI 234
L+DP +NNI
Sbjct: 259 LSDPVNNNI 267
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 115/259 (44%), Gaps = 29/259 (11%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS + + A L ++ + AA A+ + M D G R
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRAAANASPLRDVAAAASGRITMGNDLWYGPDRVKYLG 60
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
P YL G PGD+G+D L PE R + E+IH RWAML G + PE
Sbjct: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV-- 118
Query: 110 LGNWVQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS 158
L WV+ W G YLG P V ++ +L + + + VE R
Sbjct: 119 LEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI 178
Query: 159 MEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 179 NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 237
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENL HL DP NN
Sbjct: 238 GKGPLENLLDHLDDPVANN 256
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + + A+P Q + GT W T+ V+E + F EH+R
Sbjct: 115 IAPEILGKAGLIPPE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQ 172
Query: 158 ------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K YPGG F +PLGF KD + +E K+KE+KNGRLA
Sbjct: 173 DWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA 232
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 233 MLAILGYFI-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 98/199 (49%), Gaps = 18/199 (9%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-- 108
P P YL G PGD+G+D L P+ RY+E E+IH RWAML G + PE L
Sbjct: 40 PFTPESDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAK 99
Query: 109 -----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK 161
G W +A GG YLG V ++ L ++ + + E R+
Sbjct: 100 NGVPFGEAVWFKAGAQIFQDGG-LNYLGNENLVHAQSILATLAVQVILMGAAEAYRANGG 158
Query: 162 DPE------KKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPLG + DP E KVKE+KNGRLA+ + GF V Q+
Sbjct: 159 APGGFGEDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFV-QAIVT 217
Query: 215 GTGPLENLATHLADPWHNN 233
G GP+ NL HLADP NN
Sbjct: 218 GQGPIANLDAHLADPSGNN 236
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 101/186 (54%), Gaps = 21/186 (11%)
Query: 64 PGDFGFDPLR-LGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQ 115
PGD+G+D R L PE + +E E+IH RWAML G + PE L G W +
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 60
Query: 116 AQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKK 167
A GG YLG P V ++ I + + + VE R DP
Sbjct: 61 AGAQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---L 116
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG+FDPLG ++DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 117 YPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 175
Query: 228 DPWHNN 233
DP +NN
Sbjct: 176 DPVNNN 181
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
AAA A + M D G R P YL G PGD+G+D L PE R
Sbjct: 36 AAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAR 95
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ----EWAAVPG-----GQATYLGTP- 133
+ E+IH RWAML G + PE L WV+ W G YLG P
Sbjct: 96 NRALEVIHGRWAMLGALGCITPEV--LEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPN 153
Query: 134 -VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEY 188
V ++ +L + + + VE R D YPGG FDPLG + DP F E
Sbjct: 154 LVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAEL 213
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 214 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 257
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 30 AVSLPAAANATSKYAMSA--DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
+V P A S A + W+PG P YLDG+ GD+GFDPLRLG+ E L +E+
Sbjct: 14 SVRAPVKARGMSVKAAAGPQHWLPGSEPPAYLDGTMAGDYGFDPLRLGQNAETLPYLQEA 73
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEF 147
EL++ RWAM A GIL +A+GL + +A + A LG W L T++ I+
Sbjct: 74 ELMNGRWAMHATAGILFTDAVGLPKFWEAGDAA---------LGD---W-DLKTLVAIQV 120
Query: 148 LSIAFVE--HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVG 205
+ + F+E R E FDP G Q KVKEIKNGRLA+++F+G
Sbjct: 121 VVMGFLEAARIRGFYATGESGVVGNFPFDPSG-----QDSPAMKVKEIKNGRLAMMSFLG 175
Query: 206 FCVQQSAYPGTGPLENLATHLADPWHNNI 234
V Q A GT PLE L H+A+P NI
Sbjct: 176 M-VSQYAVTGTSPLEGLKAHMANPTQVNI 203
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 126/253 (49%), Gaps = 43/253 (16%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSA----DWMPGEPRPPYLDGSAPGD 66
IA ++ P + S L + + + +A+SA ++ PG P +LDG+ GD
Sbjct: 3 IAVSSIPRSSNDSLKLSRARRRLVSRSTRSGLFAVSAAARPNFFPGSTPPKHLDGTMAGD 62
Query: 67 FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-------LGNWVQAQEW 119
+GFDPL LGE L+ Y+++EL+H RWAML V G+ PE +G L NW +A +
Sbjct: 63 YGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPELVGNPFVDGPLPNWAEAPFF 122
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP--EKKK-- 167
Y+ T+ V++ + + E +R S+ DP E +K
Sbjct: 123 DG-------YIADA------NTLFVVQMFFMNWAEVRRWQDMKNPGSVHADPYDENRKCT 169
Query: 168 -----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
YPGG F+P+G +K + + KEI NGRLA++A +G C Q GTGP+ N
Sbjct: 170 GSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVAAMG-CFIQHDVTGTGPVAN 228
Query: 222 LATHLADPWHNNI 234
L H+ADP H I
Sbjct: 229 LKAHIADPVHVTI 241
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 56 WFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 114
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + A+ A+P Q + GT W T+ V+E + F EH+R
Sbjct: 115 IAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQ 172
Query: 158 ------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K YPGG F+PLGF KD + +E K+KE+KNGRLA
Sbjct: 173 DWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA 232
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ + Q G GP +NL HLA P +NN+
Sbjct: 233 MLAILGYFI-QGLVTGVGPYQNLLDHLAGPVNNNV 266
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
AAA A + M D G R P YL G PGD+G+D L PE R
Sbjct: 39 AAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAR 98
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ----EWAAVPG-----GQATYLGTP- 133
+ E+IH RWAML G + PE L WV+ W G YLG P
Sbjct: 99 NRALEVIHGRWAMLGALGCITPEV--LEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPN 156
Query: 134 -VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEY 188
V ++ +L + + + VE R D YPGG FDPLG + DP F E
Sbjct: 157 LVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAEL 216
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 217 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 260
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L L PE Y+E+EL+H RWAML G + PE L + V
Sbjct: 143 PDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGALGCIFPEILAMNYGVG 202
Query: 116 AQE--W----AAVPGGQAT-YLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE-- 164
+E W A V ++ YLG+P V ++ I + L + E R+ P
Sbjct: 203 LEEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQVLLMGGAEAYRASGVAPNGE 262
Query: 165 --KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
K +PGG F+PL F KD E KVKEIKNGRLA+ + +GF + Q+A G GPL+N
Sbjct: 263 EFDKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAMFSMLGFYI-QAATTGNGPLQN 321
Query: 222 LATHLADPWHNNI 234
L H AD + NI
Sbjct: 322 LVDHRADAANENI 334
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + + A+P + GT W T+ V E + F EH+R
Sbjct: 118 IAPEILGKAGLIPQE--TALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQ 175
Query: 158 ------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K + YPGG F+PLGF KD + ++ K+KE+KNGRLA
Sbjct: 176 DWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLA 235
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ V Q+ G GP +NL HL DP HNNI
Sbjct: 236 MLAILGYFV-QALVTGVGPYQNLLDHLTDPVHNNI 269
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 108/225 (48%), Gaps = 31/225 (13%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA AT + MS + G R P YL G PGD+G+D L PE R
Sbjct: 34 AAAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARN 93
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP-- 133
+ E+IH RWAML G + PE L WV+ V G YLG P
Sbjct: 94 RALEVIHGRWAMLGALGCITPEV--LEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNL 151
Query: 134 VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGFSKDPQKFEEY 188
V ++ +L + + + VE R + P YPGG FDPLG + DP F E
Sbjct: 152 VHAQSILAVLGFQVVLMGLVEGYR-INGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAEL 210
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KVKEIKNGRLA+ + GF V Q+ G GPLENL HLADP NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 108/225 (48%), Gaps = 31/225 (13%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA AT + MS + G R P YL G PGD+G+D L PE R
Sbjct: 34 AAAATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARN 93
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP-- 133
+ E+IH RWAML G + PE L WV+ V G YLG P
Sbjct: 94 RALEVIHGRWAMLGALGCITPEV--LEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNL 151
Query: 134 VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGFSKDPQKFEEY 188
V ++ +L + + + VE R + P YPGG FDPLG + DP F E
Sbjct: 152 VHAQSILAVLGFQVVLMGLVEGYR-INGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAEL 210
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KVKEIKNGRLA+ + GF V Q+ G GPLENL HLADP NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLADPVANN 254
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 117/233 (50%), Gaps = 42/233 (18%)
Query: 37 ANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------S 87
A++T AD W + YLDGS PGDFGFDPL L + PE + E
Sbjct: 41 ASSTPPVKQGADRQLWFASKQSLTYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYG 99
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILV 144
E+I+ R+AML G + PE LG + + A+P Q + GT W T+ V
Sbjct: 100 EIINGRFAMLGAAGAIAPEILGKAGLIPPE--TALPWFQTGVIPPAGTYDYWADPYTLFV 157
Query: 145 IEFLSIAFVEHQR--------SMEK--------------DPEKKKYPGG-AFDPLGFSKD 181
E + F EH+R SM K DP YPGG F+PLGF KD
Sbjct: 158 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDP---AYPGGPLFNPLGFGKD 214
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ +E K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 215 EKSMKELKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 266
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 104/199 (52%), Gaps = 21/199 (10%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G P P YL G PGD+G+D L PE + +E E+IHCRWA+ G + PE L
Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G G W +A GG ++ G P V ++ I + + + VE
Sbjct: 119 RNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG 177
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
DP Y GG+FDPLG DP++F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 178 GRLGEVVDP---LYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 233
Query: 215 GTGPLENLATHLADPWHNN 233
G GP+ENLA HL DP +NN
Sbjct: 234 GKGPIENLADHLTDPVNNN 252
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 107/198 (54%), Gaps = 32/198 (16%)
Query: 56 PPYLDG-SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLG 111
P +L G G+FGFDPL LG+ L+ Y ++EL + RWAML V GILV E L GLG
Sbjct: 6 PAHLKGKDLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLG 65
Query: 112 NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME--------KDP 163
W G T+ W T++ I FL A+ E R+ + DP
Sbjct: 66 GKAADVYW--FDAGNNTF------WAPKETLIAISFLLFAWAECNRAQDYFKPGSNVSDP 117
Query: 164 EKKK-------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
YPG FDPL F+K+ + +K+KEIKNGRLA+LAF+GF Q +A PG+
Sbjct: 118 FGNSIKYVELGYPG--FDPLSFTKN--DYAGWKLKEIKNGRLAMLAFLGFVAQHNAQPGS 173
Query: 217 GPLENLATHLADPWHNNI 234
PL+ LA HL++PW N+
Sbjct: 174 -PLDQLADHLSNPWKNHF 190
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 109/218 (50%), Gaps = 40/218 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGE-------VPENLERYKESELIHCRWAMLAVPG 101
W YLDG+ PGD+GFDPL L + + N Y +E+I+ R+AML G
Sbjct: 62 WFASSQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSY--AEIINGRYAMLGAAG 119
Query: 102 ILVPEALG-LGNWVQAQEWAAVPGGQATY--LGTPVPWGTLPTILVIEFLSIAFVEHQR- 157
+ PE G +G + QE A V + GT W T+ +E + F EH+R
Sbjct: 120 AIAPEIFGKIG--IIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRRA 177
Query: 158 -------SMEK--------------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNG 196
SM K DP YPGG F+P GF KD + K+KE+KNG
Sbjct: 178 QDFYKPGSMGKQYFLGFEKYLGGSGDPA---YPGGIFNPFGFGKDEKSMRTLKIKEVKNG 234
Query: 197 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
RLA+LA +G+ + Q+ + G GP +NL HLADP+ NNI
Sbjct: 235 RLAMLAILGYFI-QAPFTGVGPFQNLLDHLADPFANNI 271
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 141/275 (51%), Gaps = 54/275 (19%)
Query: 6 LMSCGIATTAFPSVLSS----SKSKFFTAVSLPAA---ANATSKYAMSAD------WMPG 52
+ + +A+ + P+V+ ++ KF A AA A+ +K+ + A+ +
Sbjct: 1 MATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKAEKSDRQLFFSD 60
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPE 106
+ YLDGS PGDFG+DPL L + PE + + SE+IHCR+AML + G++ PE
Sbjct: 61 KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMAGMVAPE 119
Query: 107 ALGLGNWVQAQE---W---AAVPG-GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSM 159
LG + A+ W +P GQ Y +P+ + IE + + F E +R
Sbjct: 120 ILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPL------ALFWIEVVLMQFAELRRWQ 173
Query: 160 E-KDPEKKK------------------YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLA 199
+ + P + YPGGA F+ LG+ KD + + K+KE+KNGRLA
Sbjct: 174 DYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLA 233
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
++A +GF +Q A G GP +NL HLADP++NNI
Sbjct: 234 MVATLGFFIQAMA-TGEGPFQNLTDHLADPFNNNI 267
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 100/185 (54%), Gaps = 20/185 (10%)
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQA 116
PGD+G+D L PE + +E E+IH RWAML G + PE L G W +A
Sbjct: 3 PGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 62
Query: 117 QEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKY 168
GG YLG P V ++ T+ + + + VE R DP Y
Sbjct: 63 GSQIFSEGG-LDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDP---LY 118
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PGG+FDPLG ++ P+ F E KVKE+KNGRLA+ + GF V Q+ G GP+ENLA HLAD
Sbjct: 119 PGGSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLAD 177
Query: 229 PWHNN 233
P +NN
Sbjct: 178 PVNNN 182
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 40/210 (19%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGDFGFDPL L + PE + E E+ + R AM+ V G++ PEALG
Sbjct: 59 YLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 117
Query: 112 NWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
V ++ A+P QA + GT W T+ V E I F EH+R SM
Sbjct: 118 GLVPSE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDWYNPGSMG 175
Query: 161 K--------------DPEKKKYPGG-AFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFV 204
K DP YPGG F+PLGF +K ++ +E K+KEIKNGRLA+LAF+
Sbjct: 176 KQYFLGLEKYLGGSGDP---AYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAFL 232
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
G + Q+ + G GP +NL HL+DP +NNI
Sbjct: 233 GMSL-QAIFTGVGPFQNLLDHLSDPVNNNI 261
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 98/187 (52%), Gaps = 21/187 (11%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 53 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 111
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 112 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 170
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 171 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 226
Query: 217 GPLENLA 223
GP+ENLA
Sbjct: 227 GPIENLA 233
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 69 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 127
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 128 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF Q+ G
Sbjct: 187 LGEITDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGF-FXQAIVTGK 242
Query: 217 GPLENLATHLA 227
GP+ENLA HLA
Sbjct: 243 GPIENLADHLA 253
>gi|116792229|gb|ABK26282.1| unknown [Picea sitchensis]
Length = 288
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 108/222 (48%), Gaps = 47/222 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+PG P +LDGS GD+GFDPL LG+ E
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 80 -------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
L+R++E ELIH RWAML V G L E W A + V G
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEG-- 186
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKF 185
++Y G +P+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G + + K
Sbjct: 187 SSYFGFSLPF-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVEEIKK 245
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+ K+ EIK+ RLA++AF+ F + Q+A GPL L
Sbjct: 246 DRLKLAEIKHARLAMVAFLIFAI-QAAVTSKGPLTLFVEFLG 286
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 116/237 (48%), Gaps = 52/237 (21%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN------------- 80
KY A W+P RP +LDGS PGD GFDPL L + V EN
Sbjct: 83 KYQGDALWLPNTVRPEWLDGSLPGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVE 142
Query: 81 ------------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQA 116
L R++E ELIH RWAMLA G LV EA +WV A
Sbjct: 143 AVVTATPDEVSAENRLAPYSEVFGLARFRECELIHGRWAMLACLGCLVAEATTGVSWVDA 202
Query: 117 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 176
+ V A+Y G +P+ ++ ++ IE + + E R+ E +PEK+ YPGG FDPL
Sbjct: 203 GK---VELDGASYAGLSLPF-SITQLIWIEVILVGGAEIYRNTETNPEKRCYPGGFFDPL 258
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
S+D ++ K EIK+ RLA+++F G+ V Q+ G G L +LA AD +N
Sbjct: 259 KLASEDEERAFRLKTAEIKHARLAMVSFFGYSV-QAFTTGEGALGSLA-KFADGLNN 313
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G P G P PE + +E E+IH RWAML G + PE L
Sbjct: 64 GEP-PSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARWAMLGALGCVFPELLSRN 122
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME-- 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 181
Query: 161 ----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 182 LGEITDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGK 237
Query: 217 GPLENLATHLADPWHNN 233
GPLENLA HLADP +NN
Sbjct: 238 GPLENLADHLADPVNNN 254
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 28/199 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P Y++G+ GD+GFDPL+LG+ + +Y+ +E+ H RWAMLAVPG+++PEALG+ GNW
Sbjct: 129 PSYMNGTLAGDYGFDPLQLGK-DGKIAQYRIAEVQHARWAMLAVPGVVIPEALGVPGGNW 187
Query: 114 VQ-AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDP--------- 163
+ + + G+ LG P IE +A VE RS + +
Sbjct: 188 TETGKVFLDGEAGRPEILGNPY------LFTAIEVALLAGVEGYRSGKLEAPAGFAPIYG 241
Query: 164 --EKKKY-------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
E K + PGG D L + P+ KVKEIKNGRLA++A +G VQ +
Sbjct: 242 KFEGKDFKGLDPINPGGPLDFLNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGATTG 301
Query: 215 GTGPLENLATHLADPWHNN 233
G GP N A H+ADP+ N
Sbjct: 302 GEGPATNWAKHVADPFAYN 320
>gi|116790890|gb|ABK25779.1| unknown [Picea sitchensis]
Length = 288
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 107/222 (48%), Gaps = 47/222 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+PG P +LDGS GD+GFDPL LG+ E
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 80 -------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQ 126
L+R++E ELIH RWAML V G L E W A + V G
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEG-- 186
Query: 127 ATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKF 185
++Y G +P+ + T+++IE L + ++E QR+ E DPE + YPGG FDP G + D K
Sbjct: 187 SSYFGFSLPF-NMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKK 245
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+ + EIK+ RLA++AF+ F + Q+A GPL L
Sbjct: 246 DRLNLAEIKHARLAMVAFLIFAI-QAAVTSKGPLTLFVEFLG 286
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 122/259 (47%), Gaps = 55/259 (21%)
Query: 15 AFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDP 71
A PS SS KS F A AT AD W + YLDGS PGDFGFDP
Sbjct: 24 ARPSFGSSRKSASFVV-----RAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDP 78
Query: 72 LRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPE---ALGLGNWVQAQEWAAV 122
L L + PE + E E+I+ R+AML G + PE +LGL A W
Sbjct: 79 LGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKT 137
Query: 123 ----PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK--------- 161
P G Y P T+ V E + F EH+R SM K
Sbjct: 138 GVIPPAGTYNYWADPY------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKF 191
Query: 162 -----DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
DP YPGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q G
Sbjct: 192 LGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QGLVTG 247
Query: 216 TGPLENLATHLADPWHNNI 234
GP +NL HL+DP +NN+
Sbjct: 248 VGPYQNLLDHLSDPVNNNV 266
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
AAA + + +MS + G R P YL G PGD+G+D L PE R
Sbjct: 34 AAAASNGRISMSNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPEAFAR 93
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------------PGGQAT 128
+ E+IH RWAML G + PE L Q+W V G
Sbjct: 94 NRALEVIHGRWAMLGALGCVFPEVL--------QKWVGVEFKEPVWFKAGAQIFSEGGLD 145
Query: 129 YLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDP 182
YLG P V ++ +L + L + VE R D YPGG FDPLG + DP
Sbjct: 146 YLGNPNLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDP 205
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 206 VTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 255
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 116/219 (52%), Gaps = 40/219 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDG+ PGDFGFDPL L + PE + E E+ + R AM+ V G+
Sbjct: 51 WFASKQSLTYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 109
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PEALG V + A+P QA + GT W T+ V E I F EH+R
Sbjct: 110 IAPEALGKVGLVPPE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQ 167
Query: 158 ------SMEK--------------DPEKKKYPGG-AFDPLGF-SKDPQKFEEYKVKEIKN 195
SM K DP YPGG F+PLGF +K ++ +E K+KEIKN
Sbjct: 168 DWYNPGSMGKQYFLGLEKYLGGSGDP---AYPGGPIFNPLGFGTKSEKEMKELKLKEIKN 224
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GRLA+LAF+G + Q+ + G GP +NL HL+DP +NNI
Sbjct: 225 GRLAMLAFLGMSL-QAIFTGVGPFQNLLDHLSDPVNNNI 262
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 97/186 (52%), Gaps = 26/186 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G++ L PE + +E E+IH RWAM W +
Sbjct: 50 PSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWAMFD-------------RWFK 96
Query: 116 AQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKK 167
A+ GG YLG P V ++ I + + + VE R DP
Sbjct: 97 ARSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVIDP---L 152
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 153 YPGGSFDPLGLADDPEAFVELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 211
Query: 228 DPWHNN 233
DP +NN
Sbjct: 212 DPVNNN 217
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 109/218 (50%), Gaps = 40/218 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGE-------VPENLERYKESELIHCRWAMLAVPG 101
W YLDG+ PGD+GFDPL L + + N Y +E+I+ R+AML G
Sbjct: 62 WFASSQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSY--AEIINGRYAMLGAAG 119
Query: 102 ILVPEALG-LGNWVQAQEWAAVPGGQATY--LGTPVPWGTLPTILVIEFLSIAFVEHQR- 157
+ PE G +G + Q+ A V + GT W T+ +E + F EH+R
Sbjct: 120 AIAPEIFGKIG--IIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRRA 177
Query: 158 -------SMEK--------------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNG 196
SM K DP YPGG F+P GF KD + K+KE+KNG
Sbjct: 178 QDYYKPGSMGKQYFLGFEKYLGGSGDPA---YPGGIFNPFGFGKDEKSMRTLKIKEVKNG 234
Query: 197 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
RLA+LA +G+ + Q+ + G GP +NL HLADP+ NNI
Sbjct: 235 RLAMLAILGYFI-QAPFTGVGPFQNLLDHLADPFANNI 271
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 99/183 (54%), Gaps = 15/183 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG---- 111
P YL G PGD+G D +L +PEN + + EL++ RWAML + G LVPE +
Sbjct: 32 PEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGRWAMLGITGCLVPELINSNPTPG 91
Query: 112 ---NWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
W + G YLG P + +L ++V++ L + E+ R ++ PE
Sbjct: 92 FEPVWFKTGAQIFSEAG-IDYLGVPGFINAHSLVAVIVVQALLMGVAEYAR-IKLSPEGN 149
Query: 167 K--YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG AFDPLGFS DP+ F E KVKEIKNGRLA++A G Q A G PL+NL
Sbjct: 150 DAFYPGGKAFDPLGFSSDPESFAELKVKEIKNGRLAMMAMAGL-FAQGAVTGVSPLQNLH 208
Query: 224 THL 226
L
Sbjct: 209 DFL 211
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 120/259 (46%), Gaps = 46/259 (17%)
Query: 5 TLMSCGIATTAFPS-VLSSSKSKFFTAVSLPAAANA----------TSKYAMSADWMP-- 51
T+ SCGI + AF +SS K + + A + T K + SA P
Sbjct: 2 TMASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWY 61
Query: 52 ------------GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 99
GEP P YL G PGD+G+D L PE + +E E+IH RWAML
Sbjct: 62 GPDRVLYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 120
Query: 100 PGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSI 150
G + PE L G W +A GG YLG P V ++ I + + +
Sbjct: 121 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILM 179
Query: 151 AFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ +
Sbjct: 180 GAVEGYRIAGGPLGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 236
Query: 205 GFCVQQSAYPGTGPLENLA 223
GF V Q+ G GP+ENLA
Sbjct: 237 GFFV-QAIVTGKGPIENLA 254
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 103/219 (47%), Gaps = 25/219 (11%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M D G R P YL G PGD+G+D L PE + +
Sbjct: 39 GTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRAL 98
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGTP--VPWGT 138
E+IH RWAML G + PE L V +E W G YLG P V +
Sbjct: 99 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 158
Query: 139 LPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 194
+ +L + + + VE R D YPGG FDPLG + DP F E KVKEIK
Sbjct: 159 ILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 218
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
NGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 219 NGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 256
>gi|118486699|gb|ABK95186.1| unknown [Populus trichocarpa]
Length = 142
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 5/144 (3%)
Query: 96 MLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 155
MLA G L E L W A + V G ++YLG P+P+ ++ T+++IE L I ++E
Sbjct: 1 MLATLGALSVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SITTLILIEVLVIGYIEF 57
Query: 156 QRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
QR+ E DPEK+ YPGG F DPLG + DP+K ++ EIK+ RLA++AF+GF V Q+
Sbjct: 58 QRNAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAWVT 116
Query: 215 GTGPLENLATHLADPWHNNIGDVI 238
G GPL N ATHL+DP H I D +
Sbjct: 117 GKGPLNNWATHLSDPLHTTIIDTL 140
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQ 117
GD+G+D L PE R +E E+IH RWAML G + PE L G W +A
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 118 EWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGA 172
GG YLG P V ++ I + + + FVE R + K YPGGA
Sbjct: 61 AQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA 119
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
FDPLG + DP E KVKE+KNGRLA+ + GF V Q+ G GP+ENL H+ADP N
Sbjct: 120 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHVADPVAN 178
Query: 233 N 233
N
Sbjct: 179 N 179
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 103/219 (47%), Gaps = 25/219 (11%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M D G R P YL G PGD+G+D L PE + +
Sbjct: 38 GTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRAL 97
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGTP--VPWGT 138
E+IH RWAML G + PE L V +E W G YLG P V +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 157
Query: 139 LPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 194
+ +L + + + VE R D YPGG FDPLG + DP F E KVKEIK
Sbjct: 158 ILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIK 217
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
NGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 218 NGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 255
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 98/189 (51%), Gaps = 21/189 (11%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE R +E E+IH RWAML G + PE L
Sbjct: 68 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 126
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 127 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGP 185
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 186 LGEVTDP---IYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 241
Query: 217 GPLENLATH 225
GP+ENLA H
Sbjct: 242 GPIENLADH 250
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A TSK+ M D G R P YL G PGD+G+D L PE + +
Sbjct: 34 AMGTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 86 ESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--V 134
E+IH RWAML G + PE L WV+ V G YLG P V
Sbjct: 94 ALEVIHGRWAMLGALGCITPEVLQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLV 151
Query: 135 PWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQKFEEYK 189
++ +L + + + VE R + P+ YPGG FDPLG + DP F E K
Sbjct: 152 HAQSILAVLGFQIVLMGLVEGFR-INGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 211 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 116/219 (52%), Gaps = 40/219 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDG+ PGDFGF+PL L + PE + E E+ + R AM+ V G+
Sbjct: 51 WFASKQSLTYLDGTLPGDFGFNPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 109
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PEALG V + A+P QA + GT W T+ V E I F EH+R
Sbjct: 110 IAPEALGKVGLVPPE--TAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQ 167
Query: 158 ------SMEK--------------DPEKKKYPGG-AFDPLGF-SKDPQKFEEYKVKEIKN 195
SM K DP YPGG F+PLGF +K ++ +E K+KEIKN
Sbjct: 168 DWYNPGSMGKQYFLGLEKYLGGSGDP---AYPGGPIFNPLGFGTKSEKEMKELKLKEIKN 224
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
GRLA+LAF+G + Q+ + G GP +NL HL+DP +NNI
Sbjct: 225 GRLAMLAFLGMSL-QAIFTGVGPFQNLLDHLSDPVNNNI 262
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 42 KYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
KY M D G R P YL G PGD+G+D L PE + + E+I
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 91 HCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTL 139
H RWAML G + PE L WV+ + V G YLG P V ++
Sbjct: 99 HGRWAMLGAFGCITPEVLQ--KWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSI 156
Query: 140 PTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKN 195
+L + + + VE R D YPGG FDPLG + DP F E KVKEIKN
Sbjct: 157 LAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 216
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
GRLA+ + GF V Q+ G GPLENL H+ DP NN
Sbjct: 217 GRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDDPVANN 253
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 29/244 (11%)
Query: 3 SNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANAT-SKYAMSADWMPGEP-RPPYLD 60
+ T ++ A S + S++ F A ++ ++ A+ + A W+ P +LD
Sbjct: 5 TTTSLTAVSAVRGARSAFAGSRAAFVAAPAMKVSSRASLTVKAQRELWIKDSTVAPAHLD 64
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
G+ PGDFGFDPL LG P+ L+ Y+E+EL++ RWAM+AV GI E LG+G W
Sbjct: 65 GTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVLGIG-----PAWY 119
Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDP 175
V G A + P+ +L I+F + +E +R K ++P +DP
Sbjct: 120 DV--GAADFDFPPL------ALLAIQFPVMGILELKRIRGWLDTGKSGVVDQFP---WDP 168
Query: 176 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
+G + D VKEIKNGRLA++AFVG VQ Y GP+ L H+ DP+ N+
Sbjct: 169 MGMNSDGM-----AVKEIKNGRLAMIAFVGIVVQAIVYR-EGPVAALKDHVTDPFGCNMA 222
Query: 236 DVII 239
I+
Sbjct: 223 SNIM 226
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 100/192 (52%), Gaps = 16/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG--LGNW 113
P YL G PGD+G+D L PE R + ELIH RWAML G + PE L +G
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 114 VQAQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
+ + W G YLG P V ++ I + + + VE R + P+
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYR-INGLPDVG 180
Query: 167 K----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPGG FDPLGF+ DP+ E KVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 181 EGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 239
Query: 222 LATHLADPWHNN 233
L HL +P NN
Sbjct: 240 LFDHLDNPVVNN 251
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 100/192 (52%), Gaps = 16/192 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG--LGNW 113
P YL G PGD+G+D L PE R + ELIH RWAML G + PE L +G
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 114 VQAQEW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
+ + W G YLG P V ++ I + + + VE R + P+
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYR-INGLPDVG 180
Query: 167 K----YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ YPGG FDPLGF+ DP+ E KVKEIKNGRLA+ + GF V Q+ G GPLEN
Sbjct: 181 EGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLEN 239
Query: 222 LATHLADPWHNN 233
L HL +P NN
Sbjct: 240 LFDHLDNPVVNN 251
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 92/171 (53%), Gaps = 20/171 (11%)
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYL 130
PE + +E E+IHCRWAML G + PE L G W +A GG YL
Sbjct: 9 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYL 67
Query: 131 GTP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDP 182
G P V ++ I + + + VE R DP YPGG+FDPLG + DP
Sbjct: 68 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDP 124
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 125 EAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 174
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 106/231 (45%), Gaps = 43/231 (18%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G PGD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------------PGGQATY 129
+ E+IH RWAML G + PE L Q+W V G Y
Sbjct: 95 RALEVIHGRWAMLGALGCITPEVL--------QKWLRVDFKEPVWFKAGAQIFSEGGLDY 146
Query: 130 LGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGFSKDP 182
LG P V ++ +L + + + VE R + P YPGG FDPLG + DP
Sbjct: 147 LGNPNLVHAQSILAVLGFQVILMGLVEGYR-INGLPGVGEGNDLYPGGQYFDPLGLADDP 205
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 206 VTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 255
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 28/237 (11%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
MA+ T+ G+ +A P + +S F AA + T + A W+P P +L+
Sbjct: 1 MAAATVAMAGV--SAAPLLKAS-----FGVKKATAARDVTVRAADRTLWLPNTVPPAHLN 53
Query: 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
G+ PGD+G+DP+ L P+ L + E+E + RWAM V GIL +AL +G + W
Sbjct: 54 GTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGVAGILFTDALHIG----SAPWF 109
Query: 121 AVPGGQATYLGTPVP-WGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKKYPGGAFDPLG 177
++ L +P+P WG + IEF+ F+E +R +K + FDPLG
Sbjct: 110 SI----GAELESPIPLWG----LATIEFVIFGFLEMKRLEGWKKTGQNGLLNWFPFDPLG 161
Query: 178 FSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ +E VKE+KNGRLA+ A+ GF V Q+ GP+ NL H+ADP++NN
Sbjct: 162 MNS-----KEMMVKEVKNGRLAMFAWCGFMV-QALVTREGPVTNLEKHIADPFNNNF 212
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 105/219 (47%), Gaps = 25/219 (11%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
+ KY+MS + G R P YL G PGD+G+D L PE + +
Sbjct: 40 GSGKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRAL 99
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGTP--VPWGT 138
E+IH RWAML G + PE L V +E W G YLG P V +
Sbjct: 100 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 159
Query: 139 LPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 194
+ +L + + + VE R D YPGG FDPLG + DP F E KVKEIK
Sbjct: 160 ILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIK 219
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
NGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 220 NGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 257
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE+ R + ELIH RWAML G + PE L + V
Sbjct: 65 PSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRVT 124
Query: 116 AQE--W-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM---EKDP 163
+E W G YLG P + ++ + ++ + + VE R+
Sbjct: 125 LKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTNGLPGVGE 184
Query: 164 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPGG FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G GPLENL
Sbjct: 185 GGDLYPGGKYFDPLGLADDPETLAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENL 243
Query: 223 ATHLADPWHNN 233
HLA+P NN
Sbjct: 244 LDHLANPVSNN 254
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 106/230 (46%), Gaps = 41/230 (17%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G PGD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------------PGGQATY 129
+ E+IH RWAML G + PE L Q+W V G Y
Sbjct: 95 RALEVIHGRWAMLGALGCITPEVL--------QKWVRVSFKEPVWFKAGAQIFSEGGLDY 146
Query: 130 LGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQ 183
LG P V ++ +L + + + VE R + E YPGG FDPLG + DP
Sbjct: 147 LGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPV 206
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
F E KVKEIKNGRLA+ + GF V Q+ G GPLENL H+ +P NN
Sbjct: 207 TFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDNPVANN 255
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P YL G PGD GFDP L PE +R + +E+IH R AMLAV G LVP+ L
Sbjct: 88 WFPNVTPPAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFL 147
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK- 167
G GNW +A A + G L E R + K
Sbjct: 148 GKGNWFEAPAIAGIDIGDVQQF----------------ILGYGVFEFGRGLNKSSNPAAI 191
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NL+ HL
Sbjct: 192 YPG--FDPLNLTSD-----YTKEAEIKNGRLALTAMLGFEVQRHVVGGS-PLANLSDHLQ 243
Query: 228 DPWHNNIGDVII 239
P NI D ++
Sbjct: 244 QPLKFNIADSVM 255
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 117/261 (44%), Gaps = 36/261 (13%)
Query: 1 MASNTLMSCGIA--TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--- 55
MAS S + TT +SS + VSL + KY M D G R
Sbjct: 1 MASTFTSSSSVLSPTTFLGQTKASSFNPLRDVVSL-----GSPKYTMGNDLWYGPDRVKY 55
Query: 56 --------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA 107
P YL G PGD+G+D L PE + + E+IH RWAML G + PE
Sbjct: 56 LGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEV 115
Query: 108 LGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQ 156
L WV+ V G YLG P V ++ +L + + + VE
Sbjct: 116 LQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGF 173
Query: 157 RSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 174 RINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAI 232
Query: 213 YPGTGPLENLATHLADPWHNN 233
G GPLENL HL +P NN
Sbjct: 233 VTGKGPLENLLDHLDNPVANN 253
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 117/261 (44%), Gaps = 36/261 (13%)
Query: 1 MASNTLMSCGIAT--TAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR--- 55
MAS S + T T +SS + VSL + KY M D G R
Sbjct: 1 MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSL-----GSPKYTMGNDLWYGPDRVKY 55
Query: 56 --------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA 107
P YL G PGD+G+D L PE + + E+IH RWAML G + PE
Sbjct: 56 LGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEV 115
Query: 108 LGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQ 156
L WV+ V G YLG P V ++ +L + + + VE
Sbjct: 116 LQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGF 173
Query: 157 RSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 174 RINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAI 232
Query: 213 YPGTGPLENLATHLADPWHNN 233
G GPLENL HL +P NN
Sbjct: 233 VTGKGPLENLLDHLDNPVANN 253
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 112/220 (50%), Gaps = 50/220 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLG-----------EVPEN----------------- 80
W+P RP +LDGS PGD GFDPL L ++ +N
Sbjct: 81 WLPNTERPAWLDGSLPGDRGFDPLGLSSPQDYLQVGIDQLDQNKAVNKAGAIVGKFAAPK 140
Query: 81 ----------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
L+R++E+ELIH RWAML G+LV EA +WV A + V
Sbjct: 141 TKISDTALQPYDEVFGLQRFRETELIHGRWAMLGALGVLVAEASTGVSWVDAGK---VEL 197
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK-DPQ 183
A YLG +P+ ++ ++ IE + + E R+ E +P+ + YPGG FDPLG + D
Sbjct: 198 DGAQYLGFSLPF-SISQLVWIEAILVGGAEIYRNRELEPQARIYPGGYFDPLGLATGDDA 256
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ + K E+K+GRLA++AF+GF VQ A G G L +LA
Sbjct: 257 RAFKLKEAELKHGRLAMIAFLGFGVQALA-TGQGALGSLA 295
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 108/223 (48%), Gaps = 29/223 (13%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A ++++ MS D G R P YL+G PGD+G+D L PE + +
Sbjct: 34 AMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 86 ESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--V 134
E+IH RWAML G + PE L WV+ V G YLG P V
Sbjct: 94 ALEVIHGRWAMLGALGCIFPEVLE--KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLV 151
Query: 135 PWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKV 190
++ +L + + + VE R + E YPGG FDPLG + DP F E KV
Sbjct: 152 HAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKV 211
Query: 191 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 212 KEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M D G R P YL G PGD+G+D L PE + +
Sbjct: 41 GTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 100
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPW 136
E+IH RWAML G + PE L WV+ V G YLG P V
Sbjct: 101 EVIHGRWAMLGALGCITPEV--LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 158
Query: 137 GTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKE 192
++ +L + L + VE R + E YPG FDPLG + DP F E KVKE
Sbjct: 159 QSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGDQYFDPLGLADDPATFAELKVKE 218
Query: 193 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
IKNGRLA+ + GF V Q+ G GPLENL HL DP NN
Sbjct: 219 IKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDDPVANN 258
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 110/210 (52%), Gaps = 41/210 (19%)
Query: 58 YLDGSAPGDFGFDPLRL-------GEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110
YLDGS PGD+GFDPL L G + N RY +E+I+ R+AML G + PE G
Sbjct: 71 YLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRY--AEIINGRFAMLGAAGAIAPEIFGK 128
Query: 111 GNWVQAQEWAAVPGGQATY---LGTPVPWGTLPTILVIEFLSIAFVEHQR--------SM 159
+ + A+P Q LG W T+ V+E + F EH+R SM
Sbjct: 129 IGLIPQE--TAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSM 186
Query: 160 EK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFV 204
K DP YPGG F+ LGF +D + ++ KVKE+KNGRLA+LA +
Sbjct: 187 GKQYFLGFEKVLGGSGDPA---YPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVL 243
Query: 205 GFCVQQSAYPGTGPLENLATHLADPWHNNI 234
G+ + Q+ + G GP +NL HL+DP +NN+
Sbjct: 244 GYFI-QAIFTGVGPFQNLLDHLSDPANNNV 272
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 28/199 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YLDG+ GD+GFDPL LG +++Y+ +E+IH RWAMLA+PG+++PEALGL G W
Sbjct: 122 PSYLDGTLAGDYGFDPLGLG-ADGAIKQYRVAEVIHARWAMLAIPGVVIPEALGLPGGVW 180
Query: 114 VQ-AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE-----KKK 167
+ + + G+ +L P+ + + L +A VE RS + P K K
Sbjct: 181 TETGKVFLDGETGRPFFLENPIVFAAVQVAL------MAGVEQFRSSGEGPAGFVPFKGK 234
Query: 168 Y------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
+ PGG D + +PQ KVKEIKNGRLA++A +G V Q G
Sbjct: 235 FDESAFKGLDPINPGGPLDFFNVASNPQDLALLKVKEIKNGRLAMIAMLGVFV-QGLTTG 293
Query: 216 TGPLENLATHLADPWHNNI 234
GP N H+ADP+ N
Sbjct: 294 EGPAANWGKHVADPFGYNF 312
>gi|87313237|gb|ABD37915.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas incerta]
Length = 259
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 103/211 (48%), Gaps = 50/211 (23%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN------------- 80
KY A W+P RP +LDGS PGD GFDPL L + V EN
Sbjct: 52 KYQGDALWLPNTARPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNVGKNNKGTVE 111
Query: 81 ------------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQA 116
L R++E ELIH RWAMLA G LV EA +WV+A
Sbjct: 112 AIVQASPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA 171
Query: 117 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 176
V A+Y G +P+ ++ ++ IE + + E R+ E DPEK+ YPGG FDPL
Sbjct: 172 ---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNTETDPEKRCYPGGVFDPL 227
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGF 206
S+D ++ K EIK+ RLA+++F G+
Sbjct: 228 KLASEDEERAFRLKTAEIKHARLAMVSFFGY 258
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 9 CGIATTAFPSVLSSSKSKFF----TAVSLPAAANATS---KYAMSADWMPGEPRPPYLDG 61
+A+ A +V ++ F A + PA A S + + W G P YLDG
Sbjct: 2 AAVASIAASNVAVLARKAFVGQAVKASAKPAGAKPVSTVVRADLGKKWYTGAKPPAYLDG 61
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
S PGD+G+DPLR+G PE L+ Y++ E+ + RWAM+ V G+L +AL +W
Sbjct: 62 SMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPDW-- 119
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
G +P L T++ IE A VE R KK G D +G
Sbjct: 120 YEAGAVAQASSPF---DLQTLIAIEIFVFATVEGFRI---STWKKTGKPGFLDIMGMDS- 172
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+ ++KEIKNGRLA+ AFVGF V Q G GP+E L HL +P NN+
Sbjct: 173 ----PDMRLKEIKNGRLAMFAFVGF-VAQYFVNGMGPVEGLLNHLENPQQNNV 220
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YLDG+ GD+GFDPLRLG PE L +E+EL++ RWAM A GIL +A+
Sbjct: 43 WYPGAVAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV 102
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
GL W +A AV G + + L V+ +SI R K E
Sbjct: 103 GLPKWWEA---GAVDYG--------MDFQQLVGFQVVA-MSILEAARTRGFMKSGESGVL 150
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
FDP G P K +VKE+KN RLA++AF+G V Q A G PLE L H+A+
Sbjct: 151 NAFPFDPAGLDA-PDK----RVKEVKNARLAMVAFLG-MVSQYAVTGLSPLEGLEAHMAN 204
Query: 229 PWHNNI 234
P N+
Sbjct: 205 PQAVNL 210
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW---AMLAVPGILVPEALGLGN 112
P YL G PGD+GFD LG+ P ++Y E++H RW A L + + LG +
Sbjct: 126 PAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFH 185
Query: 113 WVQAQEW----AAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
+V+ W + + G YLG P + ++VI + E+ R +
Sbjct: 186 FVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEAL 245
Query: 163 -------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGGA FDPL SKDP FEE KVKEIKNGRLA++A++GF +Q +A
Sbjct: 246 EPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAA-T 304
Query: 215 GTGPLENLATHLADPWHNNI 234
G GP++NL HLADP+HNN+
Sbjct: 305 GKGPVQNLLDHLADPFHNNL 324
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 108/222 (48%), Gaps = 47/222 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 56 WFASKQSLTYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRYAMLGAVGA 114
Query: 103 LVPEALGLGNWV---QAQEWAAV----PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 155
+ PE LG + A W P G Y P T+ V E + F EH
Sbjct: 115 IAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPY------TLFVFEMALMGFAEH 168
Query: 156 QR--------SMEK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKE 192
+R SM K DP YPGG F+PLGF KD + ++ K+KE
Sbjct: 169 RRFQDWANPGSMGKQYFLGLEKYLGGSGDPA---YPGGPLFNPLGFGKDEKSLKDLKLKE 225
Query: 193 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+KNGRLA+LA +G+ Q G GPL+NL HLADP +NNI
Sbjct: 226 VKNGRLAMLAILGYFA-QGPVTGVGPLQNLLDHLADPVNNNI 266
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 105/213 (49%), Gaps = 31/213 (14%)
Query: 51 PGEPRPP-------YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGIL 103
P PR P +L G+ GD GFDPL L + + +Y+E+EL+H RWAML V G L
Sbjct: 180 PSRPRLPGPLGSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCL 239
Query: 104 VPEALGL-GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ------ 156
VPE L L G + W V G + WG + + I +
Sbjct: 240 VPELLALRGVDLGEPVWWKV-GASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMG 298
Query: 157 ----------RSMEKD----PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALL 201
RS+E P + YPGG FDPL ++ D F E VKE+KNGRLA+L
Sbjct: 299 GPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAML 358
Query: 202 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
A +GF V Q+A GP++N+ +ADP HNNI
Sbjct: 359 AMLGFFV-QAAVTRVGPVQNVLDFVADPAHNNI 390
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 110/206 (53%), Gaps = 33/206 (16%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGD+GFDPL L + PE + + +E+I+ R+AML G + PE LG
Sbjct: 16 YLDGTLPGDYGFDPLGLMD-PEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 112 NWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ + A+P Q+ + G W T+ V+E + F EH+R SM
Sbjct: 75 GLIPQE--TAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 132
Query: 161 KD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
K YPGG F+ LGF K+ ++ +E KVKE+KNGRLA++A +G+
Sbjct: 133 KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFT 192
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ + G GP +NL HLADP HNN+
Sbjct: 193 -QAIFTGVGPFQNLLDHLADPVHNNV 217
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 110/206 (53%), Gaps = 33/206 (16%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGD+GFDPL L + PE + + +E+I+ R+AML G + PE LG
Sbjct: 16 YLDGTLPGDYGFDPLGLMD-PEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 112 NWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ + A+P Q+ + G W T+ V+E + F EH+R SM
Sbjct: 75 GLIPQE--TAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 132
Query: 161 KD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
K YPGG F+ LGF K+ ++ +E KVKE+KNGRLA++A +G+
Sbjct: 133 KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFT 192
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ + G GP +NL HLADP HNN+
Sbjct: 193 -QAIFTGVGPFQNLLDHLADPVHNNV 217
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 95/199 (47%), Gaps = 30/199 (15%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE R + E+IH RWAML G + PE L
Sbjct: 60 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL------- 112
Query: 116 AQEWAAV---------------PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS 158
Q+W V G YLG P V ++ +L + L + VE R
Sbjct: 113 -QKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRI 171
Query: 159 MEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 172 NGLDGVGNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 230
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLEN HL +P NN
Sbjct: 231 GKGPLENWLDHLDNPVANN 249
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 106/224 (47%), Gaps = 31/224 (13%)
Query: 37 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYK 85
A T K+ M D G R P YL G PGD+G+D L PE + +
Sbjct: 34 AMGTPKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 86 ESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--V 134
E+IH RWAML G + PE L WV+ V G YLG P V
Sbjct: 94 ALEVIHGRWAMLGALGCITPEVLQ--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLV 151
Query: 135 PWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGA-FDPLGFSKDPQKFEEYK 189
++ +L + + + VE R + P+ YPGG FDPLG + DP F E K
Sbjct: 152 HAQSILAVLGFQIVLMGLVEGFR-INGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 211 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL+G PGD+G+D L PE R + E+IH RWAML G + PE L WV+
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV--LEKWVK 124
Query: 116 AQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKD 162
W G YLG P V ++ +L + + + VE R +
Sbjct: 125 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 184
Query: 163 PEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 243
Query: 221 NLATHLADPWHNN 233
NL HL +P NN
Sbjct: 244 NLLDHLDNPVANN 256
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P Y PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 58 PAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 117
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPW---------GTLPTILVIEFLSIAFVEHQRSM 159
G W +A GG YLG P G IL + VE R +
Sbjct: 118 GEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIRRHPGRFKVIL------MGLVEGYR-V 169
Query: 160 EKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
P + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 170 NGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 228
Query: 216 TGPLENLATHLADPWHNN 233
GP++NL HL++P NN
Sbjct: 229 KGPIQNLDDHLSNPTVNN 246
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 90/169 (53%), Gaps = 19/169 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D LG P L RY+E+E+IH RWAML G++ PE L GN V
Sbjct: 169 PAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLA-GNGVP 227
Query: 116 AQEWAA--VPGGQA------TYLGTPVPWGTLPTILVIEFLS----IAFVEHQRSME--- 160
E A G Q YLG P +V+ FLS + VE R
Sbjct: 228 FGEGAVWYKAGAQIFSADGLNYLGNPSL--IHAQSVVLTFLSTLAIMGAVEGYRYGGGWP 285
Query: 161 -KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
D + YPGG FDPLG + DP F E KVKE+KNGRLA++A +GF V
Sbjct: 286 LGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNGRLAMVAMLGFYV 334
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 107/212 (50%), Gaps = 35/212 (16%)
Query: 44 AMSADWMPGEPRP---------PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRW 94
AM A + GE RP P+L G+ GD GFDPLRLG+ PE+L R E EL+H RW
Sbjct: 167 AMEASPLYGEARPLLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARW 226
Query: 95 AMLAVPGILVPEALGLGNWVQAQEWAAVP----GGQATYLGTPVPWGTLPTILVIEFLSI 150
AMLAV G+ VPEAL + + A P G A G + +G L ++ +
Sbjct: 227 AMLAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGV 286
Query: 151 AFV-----------EHQ-----RSMEKD----PEKKKYPGGA-FDPLGFSKDPQKFEEYK 189
A + E+ RS+E P YPGGA FDP G S D +F K
Sbjct: 287 AVIAACQAVLMGGPEYARYVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQK 346
Query: 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
V EI++GRLA++A +G C Q+ G GP+ N
Sbjct: 347 VIEIEHGRLAMVAMLG-CFAQAIVTGEGPVAN 377
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 110/206 (53%), Gaps = 33/206 (16%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGD+GFDPL L + PE + + +E+I+ R+AML G + PE LG
Sbjct: 34 YLDGTLPGDYGFDPLGLMD-PEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 92
Query: 112 NWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SME 160
+ + A+P Q+ + G W T+ V+E + F EH+R SM
Sbjct: 93 GLIPQE--TAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 150
Query: 161 KD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
K YPGG F+ LGF K+ ++ +E KVKE+KNGRLA++A +G+
Sbjct: 151 KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFT 210
Query: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
Q+ + G GP +NL HLADP HNN+
Sbjct: 211 -QAIFTGVGPFQNLLDHLADPVHNNV 235
>gi|307105262|gb|EFN53512.1| hypothetical protein CHLNCDRAFT_56266 [Chlorella variabilis]
Length = 276
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 50/226 (22%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPL-----------RLGEVPEN---------- 80
+Y A W+P RP +LDGS PGD GFDPL L ++ +N
Sbjct: 49 QYDGDALWLPNTSRPAWLDGSLPGDRGFDPLGLSKPVEYLQVDLDQLEQNNAVNKAGSVV 108
Query: 81 -----------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ 117
L+R++E+ELIH RWAMLA G LV E + +WV AQ
Sbjct: 109 GSFTPVIDEVSAVPLAPYSEVFGLQRFRENELIHGRWAMLACLGALVQEGVTGDSWVAAQ 168
Query: 118 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLG 177
Y G +P+ ++ + + + + VE R+ E DPEK+ YPGG FDPL
Sbjct: 169 TLVY---DSPQYAGVELPF-SIYNLAIANSVLMGGVELFRNGELDPEKRCYPGGVFDPLS 224
Query: 178 F-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
S D ++ ++ + EIK+ RLA++ F+G+ V Q+ Y G G L +L
Sbjct: 225 LASDDSERTDKLREAEIKHARLAMVGFLGYTV-QAWYTGEGALGSL 269
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 115/259 (44%), Gaps = 33/259 (12%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MA+ S G+ T F S + V T K+ M + G R
Sbjct: 6 MAATASSSTGLRPTQFVGQTRGSNANQLREV----VPMGTGKFTMGNELWYGPDRVKYLG 61
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
P YL G PGD+G+D L PE R + E+IH RWAML G + PE
Sbjct: 62 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEV-- 119
Query: 110 LGNWVQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR- 157
L WV+ W G YLG P V ++ +L + + + VE R
Sbjct: 120 LEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI 179
Query: 158 -SMEKDPEKKK-YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
+ E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 NGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 238
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENL HL +P NN
Sbjct: 239 GKGPLENLLDHLDNPVANN 257
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 87/162 (53%), Gaps = 9/162 (5%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YL G PGD+G+DP L + P++ E+Y+ ELIH RWAML G ++PEA N
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 114 VQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKK 167
W + G Y G +P L +V E + + E+ R + K
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVILVGGAEYFRITNGLGFDDKL 210
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+PGG FDPLG +KDP + KVKEIKNGRLA+ A +GF +Q
Sbjct: 211 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFLQ 252
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
+DP G SK P FE+Y+ E+ + R A+L GF + ++
Sbjct: 105 YDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEA 143
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 115/259 (44%), Gaps = 33/259 (12%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MA+ S G+ T F S + V T K+ M + G R
Sbjct: 6 MAATASSSTGLRPTQFLGQTRGSNANQLREV----VPMGTGKFTMGNELWYGPDRVKYLG 61
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
P YL G PGD+G+D L PE R + E+IH RWAML G + PE
Sbjct: 62 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEV-- 119
Query: 110 LGNWVQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR- 157
L WV+ W G YLG P V ++ +L + + + VE R
Sbjct: 120 LEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI 179
Query: 158 -SMEKDPEKKK-YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
+ E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 180 NGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 238
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENL HL +P NN
Sbjct: 239 GKGPLENLLDHLDNPVANN 257
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 104/224 (46%), Gaps = 53/224 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W P P +LDGS PGD GFDP L + E L+
Sbjct: 56 WYPNAEAPAWLDGSMPGDRGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKTD 115
Query: 83 ------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
R++E EL+H RWAML + G++ EA G V Q+ V
Sbjct: 116 NKPTERTIVPFNEAFDINRFRECELLHSRWAMLGLVGVIFGEA---GTGVAWQDAGKVEL 172
Query: 125 GQATYLGTPVPWG---TLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SK 180
Q YLG + WG L + IE L + +E RS E D EK+ YPGGAFDPLGF SK
Sbjct: 173 EQTQYLGFNL-WGEGSNLAALTAIEVLLVGTLEFYRSAELDQEKRCYPGGAFDPLGFASK 231
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
P++ K E+K+GRLA++A G QQ+ G G LE L +
Sbjct: 232 SPEETFRLKTAELKHGRLAMVAMFG-VAQQALNNGEGALEALTS 274
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 70 DPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAV 122
D L PE + +E E+IHCRWAML G + PE L G W +A
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 60
Query: 123 PGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFD 174
GG YLG P + ++ I + + + VE R DP YPGG+FD
Sbjct: 61 EGG-LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFD 116
Query: 175 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
PLG + DP F E KVKEIKNG LA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 117 PLGLADDPDAFAELKVKEIKNGMLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 174
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 105/224 (46%), Gaps = 29/224 (12%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G GD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQ----EWAAVPG-----GQATYLGTP-- 133
+ E+IH RWAML G + PE L WV+ W G YLG P
Sbjct: 95 RALEVIHGRWAMLGALGCITPEVLE--KWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 152
Query: 134 VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYK 189
V ++ +L + + + VE R + E YPGG FDPLG + DP F E +
Sbjct: 153 VHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELR 212
Query: 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
VKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 255
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 104/220 (47%), Gaps = 27/220 (12%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M + G R P YL G PGD+G+D L PE R +
Sbjct: 37 GTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGTP--VPWGT 138
E+IH RWAML G + PE L V +E W G YLG P V +
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQS 156
Query: 139 LPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEI 193
+ +L + + + VE R + P YPGG FDPLG + DP F E KVKEI
Sbjct: 157 ILAVLGFQVVLMGLVEGFR-INGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEI 215
Query: 194 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KNGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 216 KNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 254
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 117/259 (45%), Gaps = 34/259 (13%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR----- 55
MAS S + T F S+ + VS+ KY MS + G R
Sbjct: 1 MASLASSSTIVRPTPFLGKRGSNANPLRDVVSM-----GNGKYIMSNELWYGPDRVKYLG 55
Query: 56 ------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
P YL G PGD+G+D L PE + + E+IH RWAML G + PE L
Sbjct: 56 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 115
Query: 110 LGNWVQAQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR- 157
WV+ W G YLG P V ++ +L + + + VE R
Sbjct: 116 --KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 173
Query: 158 -SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
+ E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+
Sbjct: 174 NGLPGVGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV-QAIVT 232
Query: 215 GTGPLENLATHLADPWHNN 233
G GPLENL HL +P NN
Sbjct: 233 GKGPLENLLDHLDNPVANN 251
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 93/185 (50%), Gaps = 33/185 (17%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W PG PP+L G PGD GFDP+ PE+ ER + SE+ H R AML V G L+PE
Sbjct: 254 ATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPE 313
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------S 158
LG G W QA E A LG L FL+ A E+ R
Sbjct: 314 LLGRGVWFQAGESV-----DAAQLG-----------LYFMFLA-APSEYWRGNGGFGWDQ 356
Query: 159 MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
EK + YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P
Sbjct: 357 KEKKAGNRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSP 408
Query: 219 LENLA 223
+NLA
Sbjct: 409 FQNLA 413
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-------WMPGEPRPPYLDGSA 63
+A AF ++S + + + AA S AM W PG P YL G
Sbjct: 28 LAMIAFLGLVSQANTTGVSPFQNLAAVFGASPVAMFTTTGEKRPVWFPGATPPAYLTGEF 87
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123
P D GFDPL L + P ER + SE+ H R AML V G L+PE G G W E P
Sbjct: 88 PADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQGQGAWYTLSEKQFGP 147
Query: 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAFDPLGF 178
G +G + +I L +E+ R ++ + YPG FDPL
Sbjct: 148 GPNGEVIG-------FTELALIGMLFSYPLEYWRGNGGFGWFEEKGDRTYPG--FDPLQL 198
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ E K EIKNGRLA+ A +GF VQ A G PLEN A
Sbjct: 199 TS-----EYTKTAEIKNGRLAMSALLGFAVQH-ATTGASPLENWA 237
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 165 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P +NLA
Sbjct: 2 NRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSPFQNLA 52
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 35/148 (23%)
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQA 127
GFDPL+L E K +E+ + R AM A+ G V A + ++ WAA GG
Sbjct: 192 GFDPLQL-----TSEYTKTAEIKNGRLAMSALLGFAVQHATTGASPLE--NWAATTGGSV 244
Query: 128 TYLG------TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG-AFDPLGFSK 180
T P P L EF PG FDP+ F+
Sbjct: 245 AMFAAAGERATWFPGAKAPPHLTGEF---------------------PGDRGFDPVDFAA 283
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+P+ FE + E+ +GR+A+L G +
Sbjct: 284 NPESFERMRASEVFHGRMAMLGVAGCLI 311
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 93/178 (52%), Gaps = 29/178 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V G
Sbjct: 42 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 101
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +R
Sbjct: 102 MLIPEVLTKAGLINAPQW--YDAGKSEYFASSS------TLFVIEFILFHYVEIRRWQDI 153
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
S+ +DP K YPG F+PL F+ E K KE+ NG L +A
Sbjct: 154 KNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANGELHCIA 207
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
FDPLG ++DP+ Y E+ NGR A+L G + +
Sbjct: 69 FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPE 106
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 102/219 (46%), Gaps = 25/219 (11%)
Query: 39 ATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKES 87
T KY M + G R P YL G PGD+G+D L PE R +
Sbjct: 2 GTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 61
Query: 88 ELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGTP--VPWGT 138
E+IH RWAML G + PE L V +E W G YLG P V +
Sbjct: 62 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQS 121
Query: 139 LPTILVIEFLSIAFVEHQRSM---EKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 194
+ +L + + + VE R YPGG FDPLG + DP F E KVKEIK
Sbjct: 122 ILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIK 181
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
NGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 182 NGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 219
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 100/196 (51%), Gaps = 23/196 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YLDGS GD+GFDPL+LG+ +E+Y+ +E+IH RWAMLA+PGI++PEALG+ V
Sbjct: 105 PSYLDGSLAGDYGFDPLQLGK-DGKVEQYRAAEVIHARWAMLAIPGIVIPEALGIPGGVW 163
Query: 116 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD------PEKKKY- 168
+ G+A G P I+ A VE R+ + P K K+
Sbjct: 164 TETGKVFLDGEA---GRPEILQNPYLFAAIQIGLFAAVEGYRAGKAPAPDGFVPFKGKFS 220
Query: 169 -----------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
PGG D + P KVKEIKNGRLA++A +G V Q G G
Sbjct: 221 GSDFSGLDPINPGGPLDFFNVAATPDDLAVLKVKEIKNGRLAMIAMLGVFV-QGLTTGEG 279
Query: 218 PLENLATHLADPWHNN 233
P N H+ADP+ N
Sbjct: 280 PAANWGKHVADPFGYN 295
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 93/185 (50%), Gaps = 33/185 (17%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W PG PP+L G PGD GFDP+ PE+ ER + SE+ H R AML V G L+PE
Sbjct: 616 ATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPE 675
Query: 107 ALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------S 158
LG G W QA E A LG L FL+ A E+ R
Sbjct: 676 LLGRGVWFQAGESV-----DAAQLG-----------LYFMFLA-APSEYWRGNGGFGWDQ 718
Query: 159 MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218
EK + YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P
Sbjct: 719 KEKKAGNRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSP 770
Query: 219 LENLA 223
+NLA
Sbjct: 771 FQNLA 775
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 91/179 (50%), Gaps = 20/179 (11%)
Query: 47 ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
A W PG PP+L G PGD GFDP+ PE+ ER + SE+ H R AML V G L+PE
Sbjct: 254 ATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPE 313
Query: 107 ALGLGNWVQAQEW--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE 164
LG G W QA E AA G +L P + + + +K
Sbjct: 314 LLGRGVWFQAGESVDAAQLGLYFMFLAAPSEY----------WRGNGGFGWDQKEKKAGG 363
Query: 165 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P +NLA
Sbjct: 364 NRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSPFQNLA 414
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-------WMPGEPRPPYLDGSA 63
+A AF ++S + + + AA S AM W PG P YL G
Sbjct: 28 LAMIAFLGLVSQANTTGVSPFQNLAAVFGASPVAMFTTTGEKRPVWFPGATPPAYLTGEF 87
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123
P D GFDPL L + P ER + SE+ H R AML V G L+PE G G W E P
Sbjct: 88 PADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQGQGAWYTLSEKQFGP 147
Query: 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAFDPLGF 178
G +G + +I L +E+ R ++ + YPG FDPL
Sbjct: 148 GPNGEVIG-------FTELALIGMLFSYPLEYWRGNGGFGWFEEKGDRTYPG--FDPLQL 198
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ E K EIKNGRLA+ A +GF VQ A G PLEN A
Sbjct: 199 TS-----EYTKTAEIKNGRLAMSALLGFAVQH-ATTGASPLENWA 237
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-------WMPGEPRPPYLDGSA 63
+A AF ++S + + + AA S AM W PG P YL G
Sbjct: 390 LAMIAFLGLVSQANTTGVSPFQNLAAVFGASPVAMFTTTGEKRPVWFPGATPPAYLTGEF 449
Query: 64 PGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123
P D GFDPL L + P ER + SE+ H R AML V G L+PE G G W E P
Sbjct: 450 PADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPELQGQGAWYTLSEKQFGP 509
Query: 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAFDPLGF 178
G +G + +I L +E+ R ++ + YPG FDPL
Sbjct: 510 GPNGEVIG-------FTELALIGMLFSYPLEYWRGNGGFGWFEEKGDRTYPG--FDPLQL 560
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ E K EIKNGRLA+ A +GF VQ A G PLEN A
Sbjct: 561 TS-----EYTKTAEIKNGRLAMSALLGFAVQH-ATTGASPLENWA 599
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 165 KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
+ YPG FDPL + D E K KEIKNGRLA++AF+G V Q+ G P +NLA
Sbjct: 2 NRIYPG--FDPLKMTSD-----ETKTKEIKNGRLAMIAFLG-LVSQANTTGVSPFQNLA 52
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 35/148 (23%)
Query: 68 GFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQA 127
GFDPL+L E K +E+ + R AM A+ G V A + ++ WAA GG
Sbjct: 554 GFDPLQL-----TSEYTKTAEIKNGRLAMSALLGFAVQHATTGASPLE--NWAATTGGSV 606
Query: 128 TYLG------TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGG-AFDPLGFSK 180
T P P L EF PG FDP+ F+
Sbjct: 607 AMFAAAGERATWFPGAKAPPHLTGEF---------------------PGDRGFDPVDFAA 645
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+P+ FE + E+ +GR+A+L G +
Sbjct: 646 NPESFERMRASEVFHGRMAMLGVAGCLI 673
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 93/170 (54%), Gaps = 13/170 (7%)
Query: 80 NLERYKESELIHCRWAMLAVPGILVPEALGLGNWV---QAQEWAA----VPGGQATYLGT 132
+L+ Y+ ELIH RWA+L G + P A V +A W + G Y G
Sbjct: 30 SLKSYQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGA 89
Query: 133 PVPWGTLPTILVIEFLSIAFVEHQRSMEKDPE----KKKYPGGAFDPLGFSKDPQKFEEY 188
VP L ++ E + E+ RS K P + +PGGAFDPLG +KDP +F
Sbjct: 90 TVPI-NLAAAVISEVNLVGGSEYYRSTNKSPLGSDLDRLHPGGAFDPLGLAKDPDQFALL 148
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
KVKEI NGRLA+ + +GF V ++ G GP+ENLA HL+DP+ NN+ VI
Sbjct: 149 KVKEIMNGRLAMFSMLGFFV-KAYVTGEGPVENLAAHLSDPFGNNLLTVI 197
>gi|384248196|gb|EIE21681.1| chlorophyll a/b-binding protein CP29 [Coccomyxa subellipsoidea
C-169]
Length = 267
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 51/226 (22%)
Query: 35 AAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE--------------- 79
+A K+ A W+P RP +LDGS PGD GFDPL L + E
Sbjct: 40 SATRTYKKFDGDALWLPNTQRPAWLDGSLPGDRGFDPLELSKPSEFLQVDLDQSDINKSV 99
Query: 80 -----------------------------NLERYKESELIHCRWAMLAVPGILVPEALGL 110
L+R++E+ELIH RWAML G+++ EA
Sbjct: 100 NKAGGIVGKYSSSKVQATGAALSPYSEVFGLQRFRETELIHGRWAMLGALGVVIAEATTG 159
Query: 111 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPG 170
+WV A + + G Q YLG +P+ ++ ++ IE L + E R+ D +++ YPG
Sbjct: 160 VSWVDAGK-VELDGTQ--YLGFSLPF-SISQLIWIEVLLVGGAEIYRNRSTDLQERIYPG 215
Query: 171 GAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ--QSAY 213
G FDPL S D Q+ + + EIK+GRLA++AF+G +Q QS Y
Sbjct: 216 GLFDPLKLASDDSQRTFKLREAEIKHGRLAMVAFLGAQLQSRQSLY 261
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 104/200 (52%), Gaps = 39/200 (19%)
Query: 65 GDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQAQE 118
GDFGFDPL L + PE + E E+I+ R+AML G + PE LG + A+
Sbjct: 1 GDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAE- 58
Query: 119 WAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEK------ 161
A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 59 -TALPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGL 117
Query: 162 --------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
DP YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q
Sbjct: 118 EKGLGGSGDP---AYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFI-QGL 173
Query: 213 YPGTGPLENLATHLADPWHN 232
G GP +NL HLADPWHN
Sbjct: 174 VTGVGPFQNLLDHLADPWHN 193
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 105/202 (51%), Gaps = 33/202 (16%)
Query: 62 SAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWVQ 115
S PGD+GFDPL L + PE + E E+I+ R+AML G + PE LG +
Sbjct: 14 SLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 116 AQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-- 162
A+ A+P Q + GT W T+ V+E + F EH+R SM K
Sbjct: 73 AE--TALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYF 130
Query: 163 ---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSA 212
YPGG F+PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q
Sbjct: 131 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGL 189
Query: 213 YPGTGPLENLATHLADPWHNNI 234
G GP +NL HLADP +NN+
Sbjct: 190 VTGVGPYQNLLDHLADPVNNNV 211
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 96/193 (49%), Gaps = 32/193 (16%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ G+P P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 60 LSGQP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--- 174
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
+ DP+ F E KVKEIKNGRLA+ + GF V Q+ G GP+E
Sbjct: 175 -----------------IADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPVE 216
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 217 NLADHLADPVNNN 229
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 97/193 (50%), Gaps = 18/193 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE + + E+IH RWAML G + PE L WV+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE--KWVK 119
Query: 116 AQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKD 162
W G YLG P V ++ +L + + + VE R +
Sbjct: 120 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 179
Query: 163 PEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 180 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 238
Query: 221 NLATHLADPWHNN 233
NL HL +P NN
Sbjct: 239 NLLDHLDNPVANN 251
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 30/174 (17%)
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG 137
PENL + ++EL++ RWAML V G+L+PE + +W A G+ Y +
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEYFASS---- 54
Query: 138 TLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSK 180
T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F+
Sbjct: 55 --STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP 112
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E K KEI NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 113 TL----EAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 161
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 96/193 (49%), Gaps = 18/193 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PG++G+D L PE + + E+IH RWAML G + PE L WV+
Sbjct: 20 PSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQ--KWVR 77
Query: 116 AQ----EW-----AAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD-- 162
W G YLG P V ++ +L + + + VE R D
Sbjct: 78 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLRINGLDGV 137
Query: 163 -PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 138 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 196
Query: 221 NLATHLADPWHNN 233
NL HL +P NN
Sbjct: 197 NLLDHLDNPVANN 209
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 108/200 (54%), Gaps = 26/200 (13%)
Query: 38 NATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML 97
NA+S M W+ G P +LDGS GDFGFDPL LG P+ L+ Y E+E + RWAM+
Sbjct: 4 NASSDRQM---WLVGAAAPEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMM 60
Query: 98 AVPGILVPEALGLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQ 156
AV GIL E LG+ W +A G Y G P P +L +E + + F+E +
Sbjct: 61 AVAGILGQELLGVTPKWFEA--------GAKDY-GIPF----FP-LLAMEAIILGFLETK 106
Query: 157 RSMEKDPEKKKYPGGAFDPLGFSKDPQKFE--EYKVKEIKNGRLALLAFVGFCVQQSAYP 214
R + K G + F DP + ++KEIKNGRLA++AFVGF V Q+
Sbjct: 107 RY-----QGFKTTGSSGFLNSFPFDPANMNSPDMQLKEIKNGRLAMIAFVGFSV-QALVT 160
Query: 215 GTGPLENLATHLADPWHNNI 234
GP+E L H+ DP+ +NI
Sbjct: 161 REGPIEGLFNHIGDPFGHNI 180
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 102/191 (53%), Gaps = 27/191 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P +L G PGD+G+DP LG P L+RY E EL+H RWAML G +VPE L G
Sbjct: 140 PQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGAVVPELLQLAGSAT 199
Query: 113 WVQAQEWAA-----VPGGQATYLGTP---VPWGTLPTILVIEFLSIAFV---EHQRSMEK 161
+++ + W G + YLG P V G + +I F + + E+ R+
Sbjct: 200 FLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQ--GVAIIAFCQVLLMFGPEYARACGI 257
Query: 162 D---------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQS 211
P K YPGG FDPL S D +++E +V+EIKNGRLA++A++GF Q+
Sbjct: 258 SALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNGRLAMVAWLGFAA-QA 316
Query: 212 AYPGTGPLENL 222
A GP++NL
Sbjct: 317 AVTRQGPVQNL 327
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 51 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110
P P Y+DG+ GD+GFDPL+LG + Y+ +E+IH RWAMLA+PGI++PEALG+
Sbjct: 98 PATDVPSYMDGTLAGDYGFDPLKLG-ADGKINDYRAAEVIHARWAMLAIPGIVIPEALGI 156
Query: 111 --GNWVQ-AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD----- 162
G W + + + G+ L P+ + I+ A VE RS +
Sbjct: 157 PGGVWTETGKVFLDGEAGRPEILQNPIIFAG------IQIALFAAVEGYRSGKVAPPEGF 210
Query: 163 -PEKKKY------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
P K K+ PGG D + P+ KVKEIKNGRLA++A +G V
Sbjct: 211 VPGKGKFSGSDFAGLDPINPGGPLDFFNVASTPEDLAILKVKEIKNGRLAMIAMLGVFV- 269
Query: 210 QSAYPGTGPLENLATHLADPWHNN 233
Q G GP N H+ADP+ N
Sbjct: 270 QGLTTGEGPAANWGKHVADPFGYN 293
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 106/225 (47%), Gaps = 29/225 (12%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
A TS++ M + G R P YL G PGD+G+D L PE +
Sbjct: 33 VVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAK 92
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP- 133
+ E+IH RWAML G + PE L WV+ V G YLG P
Sbjct: 93 NRALEVIHGRWAMLGALGCITPEVLE--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPN 150
Query: 134 -VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEY 188
V ++ +L + + + VE R + E YPGG FDPLG + DP F E
Sbjct: 151 LVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAEL 210
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KVKEIKNGRLA+ + GF V Q+ G GPLENL H+ +P NN
Sbjct: 211 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDNPVANN 254
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 106/225 (47%), Gaps = 29/225 (12%)
Query: 35 AAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLER 83
A TS++ M + G R P YL G PGD+G+D L PE +
Sbjct: 31 VVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAK 90
Query: 84 YKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP- 133
+ E+IH RWAML G + PE L WV+ V G YLG P
Sbjct: 91 NRALEVIHGRWAMLGALGCITPEVLE--KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPN 148
Query: 134 -VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKKK-YPGGA-FDPLGFSKDPQKFEEY 188
V ++ +L + + + VE R + E YPGG FDPLG + DP F E
Sbjct: 149 LVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAEL 208
Query: 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
KVKEIKNGRLA+ + GF V Q+ G GPLENL H+ +P NN
Sbjct: 209 KVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHIDNPVANN 252
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 104/194 (53%), Gaps = 30/194 (15%)
Query: 50 MPGEPR--PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA 107
+PGE PP+L G PGD GFDPL+ G +L +++E ELI+ RWAMLA G+L+PE
Sbjct: 1405 LPGENVIVPPHLTGGLPGDIGFDPLKFG-AQSDLLKFRERELINGRWAMLAAIGVLLPEF 1463
Query: 108 L---GLGNWVQAQEW-------AAVPGGQATYLGTPVPWGT-------LPTILVIEFLSI 150
L GL Q W G Q TY+G+ +PWG LP + V E L
Sbjct: 1464 LFKFGLYGEGTDQHWWSTKIIHDVADGWQLTYMGSEIPWGLFWLPIIHLPLMFVAEMLRT 1523
Query: 151 AFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVK---EIKNGRLALLAFVGF 206
E +R D K YPGG FDPLG + + Q EE ++ EI++ RLA+LAF F
Sbjct: 1524 GKFEIERFSTLD---KLYPGGRLFDPLGLAAN-QSEEEVRILKAIEIQHCRLAMLAFSIF 1579
Query: 207 CVQQSAYPGTGPLE 220
C Q + G GPL+
Sbjct: 1580 CFQGAT--GKGPLD 1591
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL- 108
+ GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 62 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 109 ------GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSME 160
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 161 K------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF VQ
Sbjct: 180 GPLGEIVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 97/193 (50%), Gaps = 18/193 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE + + E+IH RWAML G + PE L WV+
Sbjct: 23 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE--KWVK 80
Query: 116 AQ----EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKD 162
W G YLG P V ++ +L + + + VE R +
Sbjct: 81 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 140
Query: 163 PEKKK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
E YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 141 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 199
Query: 221 NLATHLADPWHNN 233
NL HL +P NN
Sbjct: 200 NLLDHLDNPVANN 212
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 88/183 (48%), Gaps = 52/183 (28%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL+G PGD+G+DP L + PE+ +Y+ ELIH RW +L V
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWVVL----------------VG 128
Query: 116 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 175
E+ + G D E K +PGG FDP
Sbjct: 129 GAEYYRIINGL-----------------------------------DLEDKLHPGGPFDP 153
Query: 176 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
LG + DP + KVKEIKNGRLA+ + +GF + Q+ G GP+ENL+ HL+DP+ NN+
Sbjct: 154 LGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLSDPFGNNLL 212
Query: 236 DVI 238
VI
Sbjct: 213 TVI 215
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G G L PE + +E E+IH RWAML G + PE L
Sbjct: 65 PSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 116
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
G W +A GG YLG P + ++ I + + + VE R
Sbjct: 117 GEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 175
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 176 TDP---IYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 231
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 232 NLADHLADPVNNN 244
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 105/222 (47%), Gaps = 47/222 (21%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDG+ PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 50 WFASKQSLSYLDGTLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 108
Query: 103 LVPEALGLGNWV---QAQEWAAV----PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 155
+ PE G + A W P G Y W T+ V + F EH
Sbjct: 109 IAPEIFGKMGIIPPETALPWFKTGVIPPAGTYNY------WADSYTLFVFNMALMGFAEH 162
Query: 156 QR--------SMEK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKE 192
+R SM K DP YPGG F+PLGF K ++ E K+KE
Sbjct: 163 RRLQDWYNPGSMGKQYFLGLEKFLAGSGDPS---YPGGPLFNPLGFGKTEKEMNELKLKE 219
Query: 193 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
IKNGRLA+LA +G+ + Q G GP +NL HLADP +NN+
Sbjct: 220 IKNGRLAMLAILGYFI-QGLVTGVGPFQNLLDHLADPVNNNV 260
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 104/231 (45%), Gaps = 43/231 (18%)
Query: 36 AANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERY 84
AA A + MS D G R P YL G PGD+G+D L PE R
Sbjct: 35 AAAANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARN 94
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------------PGGQATY 129
+ E+IH RWAML G + PE L Q+W V G Y
Sbjct: 95 RALEVIHGRWAMLGALGCITPEVL--------QKWVRVSFKEPVWFKAGAQIFSEGGLDY 146
Query: 130 LGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGFSKDP 182
LG P V ++ +L + + + VE R + P YPGG FDPLG + DP
Sbjct: 147 LGNPNLVHAQSILAVLGFQVILMGLVEGYR-INGLPGVGEGNDLYPGGQYFDPLGLADDP 205
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
F E KVKEIKNGRLA+ + F V Q+ G G LENL H+ +P NN
Sbjct: 206 VTFAELKVKEIKNGRLAMFSMFRFFV-QAIVTGKGSLENLLDHIDNPVANN 255
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YLDG+ GD+GFDPL LG ++ Y+ +E++H RWAMLAVPG+++PEAL
Sbjct: 113 PSYLDGTLAGDYGFDPLGLG-ADGKVKDYRVAEILHARWAMLAVPGVVIPEALN------ 165
Query: 116 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEF------LSIAFVEHQRSMEKD------- 162
+PGG T G G ++EF + + + +D
Sbjct: 166 ------IPGGVWTETGKVFLDGETGRDSILEFWPIYAAIQVVLMGGAEKFRQDGVGPAGF 219
Query: 163 -PEKKKY------------PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
P K K+ PGG D +K+PQ + KVKEIKNGRLA++A +G V
Sbjct: 220 VPFKGKFEESAFNGLDPVNPGGPLDFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFV- 278
Query: 210 QSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 243
Q A G GP N H+A+P+ N V I GI
Sbjct: 279 QGAVTGEGPAANWGKHVANPFGYNF--VTITSGI 310
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYL 130
P+ RY+E E+IH RWAML G + PE L G W +A GG YL
Sbjct: 7 PQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDGG-LNYL 65
Query: 131 GTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPE------KKKYPGGAFDPLGFSKDP 182
G V ++ L ++ L + E R+ P YPGGAFDPLG + DP
Sbjct: 66 GNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSLYPGGAFDPLGLADDP 125
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
E KVKEIKNGRLA+ + GF V Q+ G GP+ NL HL+DP NN
Sbjct: 126 DTLAELKVKEIKNGRLAMFSMFGFFV-QAIVTGQGPIANLDAHLSDPTGNN 175
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 120/258 (46%), Gaps = 50/258 (19%)
Query: 22 SSKSKFFTAVSLPAAAN-----------ATSKYAMSADWM---PGEPRPPYLDGSAPGDF 67
S+++ F V+ PA AN + +K S D + + YLDGS PGDF
Sbjct: 6 SAQAAFSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDF 65
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV---QAQE 118
GFDPL L + P N + E SE+IH RWAML G + PE LG + +
Sbjct: 66 GFDPLGLLD-PVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIK 124
Query: 119 W--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------------------- 157
W + V +Y G W TI +E +++ F E +R
Sbjct: 125 WFESGVIPPAGSYNGY---WADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLE 181
Query: 158 SMEKDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
++ K YPGG F+ K +E K+KEIKNGRLA+LA +G+ Q+ G
Sbjct: 182 AIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGA-QAVMTGK 240
Query: 217 GPLENLATHLADPWHNNI 234
GP +NL HLADP +NNI
Sbjct: 241 GPFQNLVEHLADPVNNNI 258
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 91/173 (52%), Gaps = 20/173 (11%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 7 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 65
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P + ++ I ++ + + VE R
Sbjct: 66 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 124
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF VQ
Sbjct: 125 LGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 174
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 102/191 (53%), Gaps = 23/191 (12%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GLGN 112
P +LDG+ GD GFDPL L E+LERY+E EL+H RWAML V G VPE L G+ N
Sbjct: 48 PAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVAN 107
Query: 113 WVQAQEWAAVPGGQAT-----YLGTP---VPWGT-LPTILVIEFLSIAFVEHQRSMEKD- 162
+ W + YLG + G+ + I + + + E+ R + +
Sbjct: 108 LGEPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINS 167
Query: 163 --------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213
P K YPGGA FDP FS D ++FE+ KV EIK+ RLA++A +G C Q+
Sbjct: 168 LEPVGVYLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALG-CAIQAIV 226
Query: 214 PGTGPLENLAT 224
GP+ENLA+
Sbjct: 227 TRQGPIENLAS 237
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE RY+E ELIH RWAML G + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVS 113
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG V + IL + L + +E R + P
Sbjct: 114 FGESVWFKAGSQIFQEGG-LDYLGNSSLVHAQYILAILGCQVLLMGAIEAYR-VNGGPLG 171
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF VQ
Sbjct: 172 EGLDPLYPGGQFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQ 219
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G D +L +P N R + EL++ RWAML + G L PE + +
Sbjct: 44 PEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAMLGITGCLTPELINSNSTPG 103
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
W G YLG P + +L ++V++ L + E+ R ++ PE
Sbjct: 104 FEPVWFNTGAQIFSDAG-IDYLGVPGFINAHSLFAVIVVQALLMGLAEYAR-IKFVPEGA 161
Query: 167 K--YPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
YPGG FDPLGFS DP+ E KVKEIKNGRLA++A G Q A G PL+NL
Sbjct: 162 DPFYPGGKTFDPLGFSSDPEILAELKVKEIKNGRLAMMAMAGL-FAQGAVTGVSPLQNL 219
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 90/173 (52%), Gaps = 20/173 (11%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR----- 157
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGP 180
Query: 158 -SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF VQ
Sbjct: 181 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 103/219 (47%), Gaps = 31/219 (14%)
Query: 42 KYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 90
K+ M +D G R P YL G PGD+G+D L PE + + E+I
Sbjct: 38 KFTMGSDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 97
Query: 91 HCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGTP--VPWGTL 139
H RWAML G + PE L WV+ V G YLG P V ++
Sbjct: 98 HGRWAMLGAFGCITPEV--LEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSI 155
Query: 140 PTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIK 194
+L + + + VE R + P YPGG FDPLG + DP E KVKEIK
Sbjct: 156 LAVLGFQVVLMGLVESFR-INGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAELKVKEIK 214
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
NGRLA+ + GF V Q+ G GPLENL HL +P NN
Sbjct: 215 NGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 252
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 103/196 (52%), Gaps = 22/196 (11%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNW 113
P YLDG GD+GFDPL LG +++Y+ +E+IH RWAMLAVPGI++PEAL + G+W
Sbjct: 87 PSYLDGKLAGDYGFDPLGLG-ADGAIKQYRVAEVIHARWAMLAVPGIVIPEALNIAGGDW 145
Query: 114 VQAQEWAAVPGGQATYLGTPVPW---GTLPTILVI----EFLS------IAFVEHQRSME 160
+ + G G W P I+++ +F S FV + S
Sbjct: 146 RETGK--VFLEGSTGRFGPAELWLGIAVAPLIVLMGGAEKFRSDPASAPSGFVPFKGSFT 203
Query: 161 -KDPEKKK--YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
KD K PGG D + PQ E KVKEIKNGRLA++A +G V Q A G G
Sbjct: 204 GKDFAKLDPINPGGPLDFYNVAATPQDLEILKVKEIKNGRLAMIAMLGVFV-QGATTGEG 262
Query: 218 PLENLATHLADPWHNN 233
P N H+ADP+ N
Sbjct: 263 PAANWGKHVADPFGYN 278
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 120/258 (46%), Gaps = 50/258 (19%)
Query: 22 SSKSKFFTAVSLPAAAN-----------ATSKYAMSADWM---PGEPRPPYLDGSAPGDF 67
S+++ F V+ PA AN + +K S D + + YLDGS PGDF
Sbjct: 6 SAQAAFSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDF 65
Query: 68 GFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV---QAQE 118
GFDPL L + P N + E SE+IH RWAML G + PE LG + +
Sbjct: 66 GFDPLGLLD-PVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIK 124
Query: 119 W--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------------------- 157
W + V +Y G W TI +E +++ F E +R
Sbjct: 125 WFESGVIPPAGSYNGY---WADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLE 181
Query: 158 SMEKDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
++ K YPGG F+ K +E K+KEIKNGRLA+LA +G+ Q+ G
Sbjct: 182 AIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGA-QAVMTGK 240
Query: 217 GPLENLATHLADPWHNNI 234
GP +NL HLADP +NNI
Sbjct: 241 GPFQNLVEHLADPVNNNI 258
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 22/204 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+GFD L + +RY E++H RWAMLA G L PE L L
Sbjct: 124 PAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFH 183
Query: 116 AQE-------WAAVPGGQATYLGTP-VPWGTLPTILVIEFLSIAFV---EHQRSMEKD-- 162
E ++ + G YLG P + + +LVI + E+ R +
Sbjct: 184 FIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYARYCGIEAL 243
Query: 163 -------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
P YPGG FDPL S D EE KVKEIKNGRLA++A++GF Q+A
Sbjct: 244 EPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGF-YAQAALT 302
Query: 215 GTGPLENLATHLADPWHNNIGDVI 238
G GP++NL H++DP+HNN+ V+
Sbjct: 303 GKGPVQNLVEHISDPFHNNLLCVL 326
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGE-VPENLERYKESELIHCRWAMLAVPGILVPEALGL 110
G P P +LDG+ GD GFDPL L P +L+RY+E EL+H RWAML V G VPEAL
Sbjct: 189 GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAAVPEALAR 248
Query: 111 GNWVQAQE--WAAV-------PGGQATYLGTP----VPWGTLPTILVIEFLSIAFVEHQR 157
++ E W V P YLG L I + + + E+ R
Sbjct: 249 FGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLMGGPEYAR 308
Query: 158 SMEKD---------PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFC 207
+ D P + YPGGA FDP G S D FE KV E+K+GRLA++A +G C
Sbjct: 309 KVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAMVAMLG-C 367
Query: 208 VQQSAYPGTGPLENL 222
Q+ G GP+ENL
Sbjct: 368 FAQAWATGVGPVENL 382
>gi|145079082|tpg|DAA05897.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Acetabularia acetabulum]
Length = 275
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 107/228 (46%), Gaps = 51/228 (22%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE---------------------- 79
K+ A W+P RP +LDGS PGD GFDPL L + E
Sbjct: 46 KFVGDALWLPNTTRPVWLDGSLPGDRGFDPLGLAKPTEYLQVELDEQNINMGVNKAGGII 105
Query: 80 -----------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQA 116
LER++E ELIH RWAMLA G +V E +WV+A
Sbjct: 106 GSYQESAELVSSEKRLQPYKEVFGLERFRECELIHGRWAMLACLGCIVAEGATGVSWVEA 165
Query: 117 QEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPL 176
V A Y +P+ ++ ++ IE + + E R+ E D K+ YPGG FDPL
Sbjct: 166 ---GKVELDGAQYFNFNLPF-SITQLVWIEAILVGGAEIYRNTELDSVKRCYPGGIFDPL 221
Query: 177 GF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
S D ++ + K EIK+ RLA++AF+G+ + Q+ G G L +LA
Sbjct: 222 KLASDDSERSFKLKEAEIKHARLAMIAFLGYSI-QAGVTGQGALGSLA 268
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 27/190 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +LDGS GD+GFDPL LG P+ L+ Y+E+EL++ RWAM+AV GI+ E G ++
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTEVAG----IE 92
Query: 116 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPG 170
+ W A G Y P +L I+F + ++E++R + + +P
Sbjct: 93 PRWWEA---GTEDYGFPPA------ALLAIQFPVMGYLENKRIQGWMATGSSGVNETFP- 142
Query: 171 GAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
FDP+G SKD K+KEIKNGR A++AFVG VQ Y GP+ L H+++P
Sbjct: 143 --FDPMGMGSKDAN----MKLKEIKNGRAAMIAFVGIVVQAIVYR-EGPVAALKDHISNP 195
Query: 230 WHNNIGDVII 239
+ N+ I+
Sbjct: 196 FGCNMATNIM 205
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE RY+E ELIH RWAML G + PE L
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG V ++ IL + L + +E R + P
Sbjct: 114 FGESVWFKAGSQIFQEGG-LDYLGNSNLVHAQSILAILGCQVLLMGAIEAYR-VNGGPLG 171
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
+ YPG FDPLG + DP F E K+KEIKNGRLA+ + GF VQ
Sbjct: 172 EGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQ 219
>gi|32307468|gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 105/221 (47%), Gaps = 51/221 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL-----------------------RLGEV-------- 77
W+P RP +LDGS PGD GFDPL R G V
Sbjct: 73 WLPNTERPGWLDGSLPGDRGFDPLGLSKPAEYLQFDVDQLDQNAAVNRAGRVIGQYDGGI 132
Query: 78 ----PEN----------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123
EN L R++E ELIH RWAMLA G +V E W QA V
Sbjct: 133 DEVNTENSLSPYSDIFGLRRFRECELIHGRWAMLATLGAIVAELSTGVPWDQA---GKVE 189
Query: 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDP 182
A YL +P+ T+ + ++E L + E R+ E D +K+ YPGG FDPLGF +K
Sbjct: 190 LDGARYLNFDLPF-TVSQLTLLEVLLVGGAEIYRNTETDLDKRLYPGGTFDPLGFTTKSD 248
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
++ + EIK+GRLA++A G C Q+ G G +ENL+
Sbjct: 249 EQTMRLREAEIKHGRLAMVAAFG-CGVQAFTTGEGLIENLS 288
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 90/170 (52%), Gaps = 20/170 (11%)
Query: 79 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLG 131
E + +E E+IH RWAML G + PE L G W +A GG YLG
Sbjct: 3 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGG-LDYLG 61
Query: 132 TP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQ 183
P + ++ I + + + VE R DP YPGG+FDPLG + DP+
Sbjct: 62 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDP---LYPGGSFDPLGLADDPE 118
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 119 AFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 167
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 90/173 (52%), Gaps = 29/173 (16%)
Query: 42 KYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 101
K +W+PG P P YLDGS PGD GFDPL L E PENL Y ++EL++ RWAML V G
Sbjct: 42 KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAG 101
Query: 102 ILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR---- 157
+L+PE L + A +W G++ Y + T+ VIEF+ +VE +R
Sbjct: 102 MLIPEVLTKAGLINAPQW--YDAGKSEYFASSS------TLFVIEFILFHYVEIRRWQDI 153
Query: 158 ----SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGR 197
S+ +DP K YPG F+PL F+ E K KE+ N +
Sbjct: 154 KNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPT----LEAKEKELANAQ 202
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
FDPLG ++DP+ Y E+ NGR A+L G +
Sbjct: 69 FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLI 104
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 31/178 (17%)
Query: 74 LGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 133
L E PENL + ++EL++ RWAML V G+L+PE + +W A G+ Y +
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEYFASS 58
Query: 134 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPL 176
T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL
Sbjct: 59 ------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPL 112
Query: 177 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
F+ E K KEI NGRL +LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 113 NFAPTL----EAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 164
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 102/208 (49%), Gaps = 36/208 (17%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGDFGFDPL L + P N + E SE+IH RWAML G + PE LG
Sbjct: 43 YLDGTLPGDFGFDPLGLLD-PVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAA 101
Query: 112 NWV---QAQEW--AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------- 157
+ +W + V +Y G W TI +E +++ F E +R
Sbjct: 102 GLIPDATNIKWFESGVIPPAGSYDGY---WADPYTIFFVEIVAMQFAELRRLQDFRYPGS 158
Query: 158 ----------SMEKDPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGF 206
++ K YPGG F+ K +E K+KEIKNGRLA+LA +G+
Sbjct: 159 MGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGY 218
Query: 207 CVQQSAYPGTGPLENLATHLADPWHNNI 234
Q+ G GP +NL HLADP +NNI
Sbjct: 219 GA-QAVLTGKGPFQNLVEHLADPVNNNI 245
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 94/182 (51%), Gaps = 21/182 (11%)
Query: 52 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 108
GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 37 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 95
Query: 109 ----GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK- 161
G W +A GG YLG P V ++ I ++ + + VE R
Sbjct: 96 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGP 154
Query: 162 -----DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 155 LGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 210
Query: 217 GP 218
GP
Sbjct: 211 GP 212
>gi|145354756|ref|XP_001421643.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
gi|144581881|gb|ABO99936.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
Length = 260
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 49/216 (22%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W PG RP +LDGS PGD GFDP L + E
Sbjct: 48 WRPGAVRPAWLDGSLPGDRGFDPFNLSKPIEYVQFDLDALDGSAATNPAGRVIGKLKKTD 107
Query: 80 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
++ R++E EL+H RWAML + G EA +W A + V
Sbjct: 108 NKPKARAIVPYDESFDIMRFRECELLHSRWAMLGLVGATAAEAATGISWADAGK---VEL 164
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQK 184
Q YLG P+P ++ ++ IE L++ ++E RS E D K+ YPGGAFDPLG+ +
Sbjct: 165 EQPQYLGFPLPGLSVASLTAIEVLAMGYLEVARSAELDQNKRMYPGGAFDPLGYVANADA 224
Query: 185 FEEYKVK--EIKNGRLALLAFVGFCVQQSAYPGTGP 218
EE+++K E+K+GRLA++ + ++ +A G P
Sbjct: 225 EEEFRLKTAELKHGRLAMVGMLIISIEAAAGHGVLP 260
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
L +V E + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 I-NLVVAVVTEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 95/190 (50%), Gaps = 18/190 (9%)
Query: 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ- 117
L G PGD+G+D L PE + + E+IH RWAML G + PE L WV+
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE--KWVKVDF 58
Query: 118 ---EWAAVPG-----GQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEK 165
W G YLG P V ++ +L + + + VE R + E
Sbjct: 59 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 118
Query: 166 KK-YPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 119 NNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLL 177
Query: 224 THLADPWHNN 233
HL +P NN
Sbjct: 178 DHLDNPVANN 187
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W PG P YLDGS GD+GFDPLRLG E+L +E+EL++ RWAM A G+L ++
Sbjct: 2 WYPGATAPDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIGVLATDS- 60
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
N + W A G A Y + + TL VI + I R K E
Sbjct: 61 ---NPSLPKFWEA---GAADY---DIDFKTLVVTQVI-VMGILEALRIRGFMKTGESGLG 110
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
FDP G +VKE+KNGRLA++AF+G V Q A G GP+E HLAD
Sbjct: 111 ANFPFDPAGMDSPAA-----RVKEVKNGRLAMVAFLGM-VSQWAVTGMGPIEGFKAHLAD 164
Query: 229 PWHNNI 234
P NI
Sbjct: 165 PTAVNI 170
>gi|193875788|gb|ACF24530.1| chlorophyll a/b binding protein CP29 [Gymnochlora stellata]
Length = 290
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 103/221 (46%), Gaps = 51/221 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 79
W+P RP +LDGS PGD GFDPL L + E
Sbjct: 72 WLPNTVRPTWLDGSLPGDRGFDPLGLSKPAEYLQYDVDQLDQNQAVNFAGKVIGKFDGGI 131
Query: 80 ----------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123
L R++E ELIH RWAMLA G +V E W QA V
Sbjct: 132 DEVDGGNTLSPYSDIFGLRRFRECELIHGRWAMLATLGAVVAELSTGVPWDQA---GKVE 188
Query: 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDP 182
A YL +P+ T+ + ++E L + E R+ E D +K+ YPGG FDPLG +K
Sbjct: 189 LDGARYLNFNLPF-TVSQLTLLEVLLVGGAEIYRNTETDLDKRLYPGGYFDPLGLTTKSA 247
Query: 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223
++ + + EIK+GRLA++A G C Q+ G G L+NL+
Sbjct: 248 EQTQNLREAEIKHGRLAMVAAFG-CGVQAFTTGEGLLDNLS 287
>gi|308812794|ref|XP_003083704.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
gi|63029289|gb|AAY27543.1| chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4
[Ostreococcus tauri]
gi|116055585|emb|CAL58253.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
Length = 257
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 100/216 (46%), Gaps = 50/216 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------- 82
W PG RP +LDGS PGD GFDP LG+ E L+
Sbjct: 43 WRPGAVRPAWLDGSLPGDRGFDPFGLGKPAEYLQFDLDALDGSAARNPSGNVIGKLKKAD 102
Query: 83 ------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
R++E EL+H RWAML + G EA W A +
Sbjct: 103 SKPKARTIVPYDEAFDIMRFRECELLHSRWAMLGLVGAAAAEAATGITWADA---GKIEL 159
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQK 184
Q YLG P+ T+ + +IE L++ ++E RS E D K+ YPGGAFDPLG+
Sbjct: 160 EQPQYLGFPIQL-TVTQLTIIEVLAMGYLEIARSAELDQNKRMYPGGAFDPLGYVAKADA 218
Query: 185 FEEYKVK--EIKNGRLALLAFVGFCVQQSAYPGTGP 218
EE+++K E+K+GRLA+ + ++ + GT P
Sbjct: 219 QEEFRLKTAELKHGRLAMAGMLIISIEAATGRGTLP 254
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 97/186 (52%), Gaps = 26/186 (13%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
PPYL G PGD G+DPL++G ++ + +E ELIH RWAMLA G+LVPE+
Sbjct: 1262 PPYLTGEMPGDVGWDPLQMG-AQRDIMKLRERELIHGRWAMLAAIGVLVPESTARLSLFG 1320
Query: 109 --GLGNWVQAQEWAAVPGG--QATYLGTPVPWGT-------LPTILVIEFLSIAFVEHQR 157
G W EW G + TYLG +PWG LP V E L +E +
Sbjct: 1321 TPGQHWWNTHIEWTGTNSGIPELTYLGENIPWGVFWLPIIHLPLFFVAEMLRTGRLEVEA 1380
Query: 158 SMEKDPEKKKYPGGA-FDPLGFSK--DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
+ D + YPGG FDPLG ++ + K EI++ RLA++A GF V+ A+
Sbjct: 1381 FKDLD---RLYPGGKLFDPLGIGGGVSDEELKILKTIEIQHCRLAMIASFGFIVEALAW- 1436
Query: 215 GTGPLE 220
G GPL+
Sbjct: 1437 GAGPLD 1442
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L+G GD GFDP L P+ ER + +E+ H R AMLAV G LVP+ L
Sbjct: 352 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL 411
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
G G W +A + A + L + + F + E Y
Sbjct: 412 GKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIY 456
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA HL
Sbjct: 457 PG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQ 508
Query: 229 PWHNNIGDVII 239
P NI D I+
Sbjct: 509 PLQRNIADSIM 519
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 97/217 (44%), Gaps = 40/217 (18%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN T+ AM A W P P YL G A GD GFDP L P ER
Sbjct: 697 PIGANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERM 756
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 144
+ +E+ HCR +MLA+ G LVPE LG G W Q W V V
Sbjct: 757 QVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKV---------------DFNRFAV 799
Query: 145 IEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRL 198
+ +A +E+ R +++ + YPG FDPL + E K EIKNGRL
Sbjct: 800 VALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEIKNGRL 852
Query: 199 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
A++ G V QS G P+ NL HL+ P NIG
Sbjct: 853 AMIGMFGLEV-QSHVTGKSPITNLIDHLSHPLTANIG 888
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G PGD GFDPL L P ER + SE+ H R AML + G +VPE
Sbjct: 160 WFPNATPPDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPEL- 218
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME------KD 162
+ W + G T LG ++ IA +E+ R D
Sbjct: 219 ----FFSQGPWFDLSGFNLTRLG------------LVALQVIAPLEYWRGNRGFSWNGDD 262
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPG FDPL + D E K+KEIKNGRLA+ A +G V QS G PL NL
Sbjct: 263 GPDQSYPG--FDPLRLTDD-----ETKLKEIKNGRLAMTAMLGLEV-QSHITGKSPLVNL 314
Query: 223 ATHLADPWHNNI 234
+ HL++P NI
Sbjct: 315 SEHLSNPASVNI 326
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 91/194 (46%), Gaps = 36/194 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML + G +VPE L
Sbjct: 537 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 596
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM-----E 160
G G W +A + +V G L + F+++A E+ R +
Sbjct: 597 GKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 636
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K + YPG FDPL + D + E+KNGRLAL A G Q A G PL
Sbjct: 637 KGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TGESPLA 688
Query: 221 NLATHLADPWHNNI 234
NL+ HLA+P NI
Sbjct: 689 NLSAHLANPIGANI 702
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML + G +VPE L
Sbjct: 911 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 970
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM-----E 160
G G W +A + +V G L + F+++A E+ R +
Sbjct: 971 GKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 1010
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEE 187
K + YPG FDPL + D + E
Sbjct: 1011 KGELDRSYPG--FDPLNLTTDYTRAAE 1035
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 167 KYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+YP FDPL + DP + +V E+ +GRLA+L VG V
Sbjct: 924 EYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
>gi|224285629|gb|ACN40533.1| unknown [Picea sitchensis]
Length = 249
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLP 140
L+R++E ELIH RWAML V G L E W A + V G ++Y G +P+ +
Sbjct: 104 LQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEG--SSYFGFSLPF-NMS 160
Query: 141 TILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLA 199
T+++IE L + ++E QR+ E DPE + YPGG FDP G + D K + K+ EIK+ RLA
Sbjct: 161 TLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLKLAEIKHARLA 220
Query: 200 LLAFVGFCVQQSAYPGTGPL 219
++AF+ F + Q+A GPL
Sbjct: 221 MVAFLIFAI-QAAVTSKGPL 239
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+ GE P YL G GD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 53 WLSGET-PAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELL 111
Query: 109 GLGN-------WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM 159
W +A GG YLG V ++ L+++ + + VE R
Sbjct: 112 ANNGTPIAEPVWFKAGAQIFQDGG-LNYLGNENLVHAQSIIVTLLVQVILMGTVEGYRVN 170
Query: 160 ---EKDPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCV 208
+ K YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V
Sbjct: 171 GGPAGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 223
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 89/175 (50%), Gaps = 19/175 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + P+ L N VQ
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPKLLS-KNGVQ 113
Query: 116 AQE--WAAVPG-----GQATYLG--TPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKK 166
E W G YLG + V + L + + + VE R + P +
Sbjct: 114 FSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQVILMGLVEGYR-VNGGPAGE 172
Query: 167 K----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF VQ PG G
Sbjct: 173 GLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQ----PGKG 223
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKN 195
+ ++ L ++ + D E K +PGG FDPLG +KDP +F KVKEIKN
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 196 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
GRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 120 GRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 39 ATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWA 95
A+ + S D W P P +L G GD GFDP L PE ER + +E+ H R A
Sbjct: 81 ASGRKTQSEDRPLWFPNTLAPSWLTGEYFGDRGFDPAGLAADPETFERMRIAEVYHGRLA 140
Query: 96 MLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH 155
MLAV G LVP+ LG G W +A + A + G + + V
Sbjct: 141 MLAVVGALVPDYLGKGIWYEAAQNAGI--------------GVKEVAIFTAAYGVFEVAR 186
Query: 156 QRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
DP YPG FDPL + D K EIKNGRLAL A +GF VQ+ G
Sbjct: 187 GVKENSDP-TTVYPG--FDPLNLTTDYT-----KEAEIKNGRLALTALLGFEVQRHVVGG 238
Query: 216 TGPLENLATHLADPWHNNIGDVII 239
+ PL NLA HL P NI D I+
Sbjct: 239 S-PLANLADHLQQPLQRNIADSIM 261
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 97/217 (44%), Gaps = 40/217 (18%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN T+ AM A W P P YL G A GD GFDP L P ER
Sbjct: 439 PIGANITTNLAMFASSGVKEERELWFPNIVPPRYLTGEAFGDKGFDPAGLAADPVTFERM 498
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 144
+ +E+ HCR +MLA+ G LVPE LG G W Q W V V
Sbjct: 499 QVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKV---------------DFNRFAV 541
Query: 145 IEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRL 198
+ +A +E+ R +++ + YPG FDPL + E K EIKNGRL
Sbjct: 542 VALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEIKNGRL 594
Query: 199 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
A++ G V QS G P+ NL HL+ P NIG
Sbjct: 595 AMIGMFGLEV-QSHVTGKSPITNLIDHLSSPLTANIG 630
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 94/199 (47%), Gaps = 36/199 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML + G +VPE L
Sbjct: 653 WFPDAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 712
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQR-----SME 160
G G W +A + +V G L + F+++A E+ R + +
Sbjct: 713 GKGAWFEAGD--SVDG------------------LKLGFIAMAIAAPTEYWRGHGGFNWQ 752
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K + YPG FDPL + D K E+KNGRLAL A G Q A G PL
Sbjct: 753 KGDLDRSYPG--FDPLNLTTDYT-----KAAEVKNGRLALTAVAGLTAQYLA-TGESPLA 804
Query: 221 NLATHLADPWHNNIGDVII 239
NLA HLA+P NI ++
Sbjct: 805 NLAAHLANPVGANIATNLV 823
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 92/194 (47%), Gaps = 36/194 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML + G +VPE L
Sbjct: 279 WFPDAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 338
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQR-----SME 160
G G W +A + +V G L + F+++A E+ R + +
Sbjct: 339 GKGAWFEAGD--SVDG------------------LKLGFIAMAIAAPTEYWRGHGGFNWQ 378
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K + YPG FDPL + D K E+KNGRLAL A G Q A G PL
Sbjct: 379 KGDLDRSYPG--FDPLNLTTDYT-----KAAEVKNGRLALTAVAGLTAQYLA-TGESPLA 430
Query: 221 NLATHLADPWHNNI 234
NL+ HLA+P NI
Sbjct: 431 NLSAHLANPIGANI 444
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
D + YPG FDPL + EE K+KEIKNGRLA+ A +G V QS G PL
Sbjct: 4 DDGPDQSYPG--FDPLRLTD-----EETKLKEIKNGRLAMTAMLGLEV-QSHLTGKSPLV 55
Query: 221 NLATHLADPWHNNI 234
NL+ HL++P NI
Sbjct: 56 NLSEHLSNPASVNI 69
>gi|145078670|tpg|DAA05880.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Euglena gracilis]
Length = 263
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 95/203 (46%), Gaps = 48/203 (23%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPL---------------------------RLGEVPEN- 80
W P P YLDGS PGD GFDP +G+V E
Sbjct: 40 WFPSAVAPDYLDGSLPGDRGFDPWGFAKPEELLQYTTGTADITLSKNKDEEYVGKVKEER 99
Query: 81 ----------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
L+R +E ELIH RWAML V G LV EA+ W A A G
Sbjct: 100 DVLTGEPLVPWSSAFGLKRLRECELIHGRWAMLFVLGALVGEAVTGVAWQNAGLVEAREG 159
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDPQ 183
TY G +P+ I E L++ FVE R+ E + EK+ YPGGAFDPLG SKD +
Sbjct: 160 --YTYFGFSLPFSG-SQITWFEVLTMGFVEIFRNTEMNIEKRVYPGGAFDPLGLASKDAE 216
Query: 184 KFEEYKVKEIKNGRLALLAFVGF 206
K EIK+ RLA++AF+GF
Sbjct: 217 TTFRLKEAEIKHARLAMVAFLGF 239
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 28/198 (14%)
Query: 49 WMPGEPRPP-YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEA 107
W+P + P +LDG+ GD+GFDPL LG P L+ Y+E+EL++ RWAM+AV GI+ E
Sbjct: 2 WLPAPYKAPAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAGIVGTEI 61
Query: 108 LGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKD 162
G ++ + W A G Y P +L ++ + ++E++R +
Sbjct: 62 AG----IEPRWWEA---GTEDYGFPP------QALLAVQLPVMGYLENKRIQGWLATGSS 108
Query: 163 PEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+ +P FDP+G SKD E+ K+KEIKNGR A++AFVG VQ Y GP+
Sbjct: 109 GVNETFP---FDPMGMGSKD----EKMKLKEIKNGRAAMIAFVGIVVQGIVYR-EGPVAA 160
Query: 222 LATHLADPWHNNIGDVII 239
L H+A+P+ N+ I+
Sbjct: 161 LKDHVANPFGCNMATNIM 178
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G GD GFDP L P+ ER + +E+ H R AMLA+ G LVP+ L
Sbjct: 352 WFPNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPDYL 411
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
G G W +A + A + L + + F + E Y
Sbjct: 412 GKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIY 456
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA HL
Sbjct: 457 PG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLADHLQQ 508
Query: 229 PWHNNIGDVII 239
P +NI D I+
Sbjct: 509 PLQHNIADSIM 519
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 96/217 (44%), Gaps = 40/217 (18%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN + AM A W P P YL G A GD GFDP L P ER
Sbjct: 697 PIGANIATNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERM 756
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 144
+ +E+ HCR +MLA+ G LVPE LG G W Q W V V
Sbjct: 757 QVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKV---------------DFNRFAV 799
Query: 145 IEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRL 198
+ +A +E+ R +++ + YPG FDPL + E K EIKNGRL
Sbjct: 800 VALQVVAPLEYWRGNGGFLWNDEETIDQSYPG--FDPLNLTT-----EYTKEAEIKNGRL 852
Query: 199 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235
A++ G V QS G P+ NL HL+ P NIG
Sbjct: 853 AMIGMFGLEV-QSHVTGKSPITNLIDHLSHPLTANIG 888
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 91/194 (46%), Gaps = 36/194 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML + G +VPE L
Sbjct: 537 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 596
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM-----E 160
G G W +A + +V G L + F+++A E+ R +
Sbjct: 597 GKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 636
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K + YPG FDPL + D + E+KNGRLAL A G Q A G PL
Sbjct: 637 KGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TGESPLA 688
Query: 221 NLATHLADPWHNNI 234
NL+ HLA+P NI
Sbjct: 689 NLSAHLANPIGANI 702
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 90/194 (46%), Gaps = 36/194 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G P D GFDPL L P+ R + +E+ H R AML + G +VPE L
Sbjct: 911 WFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 970
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM-----E 160
G G W +A + +V G L + F+++A E+ R +
Sbjct: 971 GKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 1010
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K + YPG FDPL + D + E+KNGRLAL A G Q A G PL
Sbjct: 1011 KGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TGESPLA 1062
Query: 221 NLATHLADPWHNNI 234
NL HLA+P NI
Sbjct: 1063 NLTAHLANPLGANI 1076
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L G PGD GFDPL L + P ER + SE+ H R AML + G +VPE
Sbjct: 160 WFPNATPPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPEL- 218
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME------KD 162
+ W + T LG ++ IA +E+ R D
Sbjct: 219 ----FFSQGPWFDLSSFNLTRLG------------LVALQVIAPLEYWRGNRGFSWNGDD 262
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+ YPG FDPL + EE K+KEIKNGRLA+ A +G V QS G PL NL
Sbjct: 263 GPDQSYPG--FDPLRLTD-----EETKLKEIKNGRLAMTAMLGLEV-QSHITGKSPLVNL 314
Query: 223 ATHLADPWHNNI 234
+ HL++P NI
Sbjct: 315 SEHLSNPASVNI 326
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 98/192 (51%), Gaps = 29/192 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P +L GS GD GFDPL LG+ L+ Y E+E + RWAM+AV GIL E L
Sbjct: 31 WLPGLSPPAHLKGSLAGDSGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVTGILGQELL 90
Query: 109 GLG-NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKD 162
G+ +W +A G Y P + IEF+ + F+E +R +
Sbjct: 91 GVTPSWYEA--------GAKEYDIPSTP------LTAIEFIVMGFLEIKRYQGFKTTGTS 136
Query: 163 PEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
+P FDP G + KE+KNGRLA++AFVGF V Q+ T P+E L
Sbjct: 137 GFINSFP---FDPAGLNS-----ASMATKEVKNGRLAMVAFVGFAV-QALVTRTQPIEGL 187
Query: 223 ATHLADPWHNNI 234
HL+DP+ NI
Sbjct: 188 TKHLSDPFGKNI 199
>gi|126251|sp|P08976.1|LH18_EUGGR RecName: Full=Light-harvesting complex I LH38 proteins; Contains:
RecName: Full=LH38 protein 1; Contains: RecName:
Full=LH38 protein 2; Contains: RecName: Full=LH38
protein 3; Flags: Precursor
gi|755729|emb|CAA31338.1| unnamed protein product [Euglena gracilis]
Length = 530
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P +L+G GD GFDP L P+ ER + +E+ H R AMLAV G LVP+ L
Sbjct: 5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL 64
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKY 168
G G W +A + A + L + + F + E Y
Sbjct: 65 GKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIY 109
Query: 169 PGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
PG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA HL
Sbjct: 110 PG--FDPLNLTTDYT-----KEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQ 161
Query: 229 PWHNNIGDVII 239
P NI D I+
Sbjct: 162 PLQRNIADSIM 172
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 89/194 (45%), Gaps = 36/194 (18%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W P P L G P D GFDPL L P+ R + +E+ H R AML G +VPE L
Sbjct: 190 WFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL 249
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAF---VEHQRSM-----E 160
G G W +A + +V G L + F+++A E+ R +
Sbjct: 250 GKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 289
Query: 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
K + YPG FDPL + D + E+KNGRLAL A G Q A G PL
Sbjct: 290 KGELDRSYPG--FDPLNLTTDYT-----RAAEVKNGRLALTAVAGLTAQYLA-TGESPLA 341
Query: 221 NLATHLADPWHNNI 234
NL+ HLA+P NI
Sbjct: 342 NLSAHLANPIGANI 355
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 34 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERY 84
P AN T+ AM A W P P YL G A GD GFDP L P ER
Sbjct: 350 PIGANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERM 409
Query: 85 KESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILV 144
+ +E+ HCR +MLA+ G LVPE LG G W Q W V V
Sbjct: 410 QVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKV---------------DFNRFAV 452
Query: 145 IEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRL 198
+ +A +E+ R +++ + YPG FDPL + E K EIKNGRL
Sbjct: 453 VALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEIKNGRL 505
Query: 199 ALLAFVGFCVQQSAYPGTGPLENL 222
A+ G V QS G P+ NL
Sbjct: 506 AMNGMFGLEV-QSHVTGKSPINNL 528
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P +L G+ GD GFDPL LG+ L+ Y E+E + RWAM+AV GIL E L
Sbjct: 31 WLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVAGILGQELL 90
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKK 166
G V W A G Y +P L IEF+ + F+E +R ++
Sbjct: 91 G----VTPAWWEA---GAKEY---DIPAQALTP---IEFIVMGFLEIKRYQGFKQTGTSG 137
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
FDP G + KE+KNGRLA++AF+GFCVQ A T P+E L HL
Sbjct: 138 FINSFPFDPAGMNSP-----SMATKEVKNGRLAMVAFIGFCVQALATR-TQPIEGLTAHL 191
Query: 227 ADPWHNNI 234
ADP+ NI
Sbjct: 192 ADPFGKNI 199
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVAGQGPVENLASHLSDPFGNNLLTVI 161
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + Y+E ELIH RWAML G + PE L
Sbjct: 46 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYGGVS 105
Query: 109 -GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEK 165
G W +A GG YLG + ++ IL + + + +E R + P
Sbjct: 106 FGESVWFKAGSQIFQEGG-LDYLGNSNLIHAQSILAILGCQVVLMGLIEAYR-VNGGPLG 163
Query: 166 KK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219
+ +PG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+
Sbjct: 164 EGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYV-QAIVTGKGPI 220
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + ++ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-KAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 103/213 (48%), Gaps = 46/213 (21%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGDFGFDPL L + P N + E SE+IH RWAML G + PE LG
Sbjct: 57 YLDGTLPGDFGFDPLGLLD-PVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGAA 115
Query: 112 -------NWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR------- 157
N V + P G +Y G W TI IE +++ F E +R
Sbjct: 116 GLIPEKTNIVWYESGVIPPAG--SYDGY---WADPYTIFFIEIVAMQFAELRRLQDFRYP 170
Query: 158 -SMEK--------------DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALL 201
SM K DP YPGG F+ K +E K+KEIKNGRLA+L
Sbjct: 171 GSMGKQYFLGLEKIFAGSGDP---AYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAML 227
Query: 202 AFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
A +G+ Q+ GP +NL HLADP +NNI
Sbjct: 228 AMLGYGA-QATLTREGPFQNLLDHLADPVNNNI 259
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 108
W+PG P +L G+ GD GFDPL LG+ L+ Y E+E + RWAM+AV GIL E L
Sbjct: 31 WLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVAGILGQELL 90
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--SMEKDPEKK 166
G V W A G Y +P L IEF+ + F+E +R ++
Sbjct: 91 G----VTPAWWEA---GAKEY---DIPAQALTP---IEFIVMGFLEIKRYQGFKQTGTSG 137
Query: 167 KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
FDP G + KE+KNGRLA++AF+GFCVQ A T P+E L HL
Sbjct: 138 FINSFPFDPAGMNSP-----SMATKEVKNGRLAMVAFIGFCVQALATR-TQPIEGLTAHL 191
Query: 227 ADPWHNNI 234
ADP+ NI
Sbjct: 192 ADPFGKNI 199
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 100/212 (47%), Gaps = 43/212 (20%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENL------ERYKESELIHCRWAMLAVPGILVPEALGLG 111
YLDG+ PGDFGFDPL L + PE E SE+IHCRWAML + G L PE L
Sbjct: 63 YLDGTLPGDFGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 112 NWVQAQEWAAV--------PGGQ-ATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME-K 161
+ A AV P GQ Y W T+ +E + + F E +R + +
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAY------WTDAYTLFWVEAIMMNFAELKRWQDYQ 175
Query: 162 DPEKK------------------KYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202
P + YPGG F+ L K P+ ++ + EI+NGRLA++A
Sbjct: 176 SPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIA 235
Query: 203 FVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+G C Q+ GP NL HLADP NN+
Sbjct: 236 CLG-CFGQAVMTTKGPFANLLDHLADPISNNV 266
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN--- 112
P YL G PGD+G+D L PE +RY+E ELIH RWAML G + PE L
Sbjct: 63 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLAKNGTPI 122
Query: 113 ----WVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSM---EKDP 163
W +A GG YLG + ++ L ++ + + +E R +
Sbjct: 123 AEPVWFKAGAQIFQEGG-LDYLGNAGLIHAQSILATLAVQVILMGAIEGYRVNGGPAGEG 181
Query: 164 EKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 209
K +PGG FDPLG ++DP F E KVKEIKNGRLA+ + GF VQ
Sbjct: 182 LDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 228
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + ++ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-KAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 103/204 (50%), Gaps = 31/204 (15%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPE------NLERYKESELIHCRWAMLAVPGILVPEAL-GL 110
YLDG+ PGDFGFDPL + + PE N + SE+IH RWAML V GI+ PE L G+
Sbjct: 81 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 111 GNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD 162
G ++ G GT W TI + + F E +R S +
Sbjct: 140 GVIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGSQAET 199
Query: 163 P----EKK-------KYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 210
P EK YPGG F+P KD + KE+KNGRLA++AF+G C+ Q
Sbjct: 200 PLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKKEVKNGRLAMMAFLG-CMVQ 256
Query: 211 SAYPGTGPLENLATHLADPWHNNI 234
+A G GP +N+ H+ADP+ N+
Sbjct: 257 AAVTGEGPWKNICDHVADPFGANM 280
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ EL H RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+E+LA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVESLASHLSDPFGNNLLTVI 161
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 66 DFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP-- 123
D+G+D L PE + + E+IH RWAML G + PE L Q+W V
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL--------QKWLNVTFK 52
Query: 124 -------------GGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEK 165
G YLG P V ++ +L + + + VE R D
Sbjct: 53 EPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGN 112
Query: 166 KKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 224
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL
Sbjct: 113 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLD 171
Query: 225 HLADPWHNN 233
HL +P NN
Sbjct: 172 HLDNPVANN 180
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ 117
+L+G GD GFDPL LG+ P R++E EL+H RWAML G +VPE L L V+
Sbjct: 72 HLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLAL-RGVELG 130
Query: 118 E--WAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFV-----------EHQ-----RSM 159
E W V G + WG + + I + E+ RS+
Sbjct: 131 EPVWWKV-GASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSL 189
Query: 160 EKD----PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214
E P + YPGG FDPL ++ D F + V+EIKNGRLA++A +G V Q+A
Sbjct: 190 EPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLGLFV-QAAVT 248
Query: 215 GTGPLENLATHLADPWHNNI 234
GP++N+ ++DP NI
Sbjct: 249 KKGPVQNVMEFVSDPAGENI 268
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 94/196 (47%), Gaps = 33/196 (16%)
Query: 53 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 108
E P YL G PGD+G+D L PE +AML G + PE L
Sbjct: 64 EQTPSYLTGEFPGDYGWDTAGLSADPET-------------FAMLGALGCVFPELLAKTG 110
Query: 109 ---GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQR------ 157
G W +A GG YLG P + ++ I + + + +E R
Sbjct: 111 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 169
Query: 158 SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
DP YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G G
Sbjct: 170 GEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKG 225
Query: 218 PLENLATHLADPWHNN 233
P+ENL HLADP NN
Sbjct: 226 PIENLFDHLADPTANN 241
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG 137
PE+L ++EL+H RWAML GI +PE L + W G Q + T
Sbjct: 3 PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA-GEQEYFTDT----- 56
Query: 138 TLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF- 178
T+ ++E + I + E +R + DP YPGG FDPLG+
Sbjct: 57 --TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 114
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I
Sbjct: 115 SASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAF 173
Query: 239 IPR 241
P+
Sbjct: 174 TPK 176
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ EL H RWAML G ++PEA W + + G Y G +P
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIP 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+H++DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVENLASHMSDPFGNNLLTVI 161
>gi|422293219|gb|EKU20519.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Nannochloropsis gaditana CCMP526]
Length = 220
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 111/221 (50%), Gaps = 30/221 (13%)
Query: 11 IATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFD 70
+A AFP+ S+ K A T+ A + +P +P LDGS GD GFD
Sbjct: 18 VAPVAFPTASSAGK----------AMRGRTTMMAERSKSLPFLMKPKNLDGSMAGDVGFD 67
Query: 71 PLRLGEVPE---NLERYKESELIHCRWAMLAVPGILVPEALGLG-----NWVQAQEWAAV 122
PL L E+ E +L +E+EL HCR M+A GIL EA+G Q + V
Sbjct: 68 PLGLSEINEVGIDLYWLREAELKHCRLGMMAAAGILFVEAVGPAPGFPSTKSQMDAFWTV 127
Query: 123 PGGQATYLGTPVPWGTLPTILVIEFLS-IAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+ + +G L I ++E +S +A + +++ ++ P FDPLGF KD
Sbjct: 128 YAEKPSLVGA-----ALVAIAILEVISGVATTQGRQNGDRAPGDYN-----FDPLGFGKD 177
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
P KF++ ++KE+KNGRLA++A G + Q G L+NL
Sbjct: 178 PAKFKDLQLKEVKNGRLAMIAAAGMIL-QGVSTHQGALQNL 217
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 84 YKESELIHCRWAMLAVPGILVPEALGL--------GNWVQAQEWAAVPGGQATYLGTPVP 135
Y+ ELIH RWAML G ++PEA W + + G Y G +
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALL-LDGNTLNYFGKNIH 59
Query: 136 WGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIK 194
+ ++ + + E+ R + D E K +PGG FDPLG +KDP +F KVKEIK
Sbjct: 60 INLVVAVVAEV-VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 118
Query: 195 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
NGRLA+ + F + Q+ G GP+ENLA+HL+DP+ NN+ VI
Sbjct: 119 NGRLAMFSMFAFFI-QAYVTGQGPVENLASHLSDPFGNNLLTVI 161
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,393,133,656
Number of Sequences: 23463169
Number of extensions: 196936721
Number of successful extensions: 408155
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 404
Number of HSP's that attempted gapping in prelim test: 401719
Number of HSP's gapped (non-prelim): 2641
length of query: 245
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 106
effective length of database: 9,097,814,876
effective search space: 964368376856
effective search space used: 964368376856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)