BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025952
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 402 bits (1034), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/241 (85%), Positives = 219/241 (90%), Gaps = 3/241 (1%)
Query: 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
MASN+LMSCGIA +PS+LSSSKSKF +A V LP A N + M+A WMPGEPRP YL
Sbjct: 1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
KDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct: 179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
Query: 240 P 240
P
Sbjct: 239 P 239
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/187 (93%), Positives = 179/187 (95%)
Query: 50 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109
MPGEPRP YLDGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 110 LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYP 169
GNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYP
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYP 120
Query: 170 GGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
GGAFDPLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP
Sbjct: 121 GGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 180
Query: 230 WHNNIGD 236
WHNNIGD
Sbjct: 181 WHNNIGD 187
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 330 bits (845), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 158/170 (92%), Positives = 163/170 (95%)
Query: 62 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAA 121
SAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEWAA
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 122 VPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKD 181
+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SKD
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 120
Query: 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 231
P+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH
Sbjct: 121 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 170
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 126/247 (51%), Gaps = 50/247 (20%)
Query: 39 ATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE---------------- 79
A K S D W PG P YLDGS GD+GFDP LG+ E
Sbjct: 1 AQPKSGFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKN 60
Query: 80 ---------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGN 112
L+R++E ELIH RWAMLA G L E L
Sbjct: 61 LAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGIT 120
Query: 113 WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGA 172
W A + + G ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG
Sbjct: 121 WQDAGKVELIEG--SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGT 177
Query: 173 FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
FDPLG + DP+K ++ EIK+ RLA++ F+GF V Q+A G GPL N THL+DP H
Sbjct: 178 FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAV-QAAVTGKGPLNNWVTHLSDPLHT 236
Query: 233 NIGDVII 239
I D +
Sbjct: 237 TILDRFL 243
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 130/247 (52%), Gaps = 39/247 (15%)
Query: 9 CGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAP 64
CG+ + L S K V+ P + ++ + + A +W+PG P YL GS P
Sbjct: 16 CGLKS----RFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLP 71
Query: 65 GDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124
GD GFDPL L E PENL + ++EL++ RWAML V G+L+PE + +W A
Sbjct: 72 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAA-- 129
Query: 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK--------- 167
G+ Y + T+ VIEF+ +VE +R S+ +DP K+
Sbjct: 130 GKEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183
Query: 168 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
YPGG F+PL F+ E K KEI NGRL +LAF+GF +Q + G GP +NL H++
Sbjct: 184 YPGGIFNPLNFAPT----LEAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNLLQHIS 237
Query: 228 DPWHNNI 234
DPWHN I
Sbjct: 238 DPWHNTI 244
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 125/243 (51%), Gaps = 35/243 (14%)
Query: 24 KSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVP 78
K K ++ + P+ +TS A+ W PG PP+LDGS PGDFGFDPL LG P
Sbjct: 37 KLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 79 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGT 138
E+L ++EL+H RWAML GI +PE L + W G Q + T
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA-GEQEYFTDT------ 149
Query: 139 LPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-S 179
T+ ++E + I + E +R + DP YPGG FDPLG+ S
Sbjct: 150 -TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 208
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL-ATHLADPWHNNIGDVI 238
PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL A HLADP H I
Sbjct: 209 ASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAAHLADP-HATIFAAF 266
Query: 239 IPR 241
P+
Sbjct: 267 TPK 269
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IHCRWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEV 151
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 104/195 (53%), Gaps = 28/195 (14%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ 115
P +LDGS PGDFGFDPL L PE+L ++EL+H RWAML GI +PE L +
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 116 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---- 163
W G Q + T T+ ++E + I + E +R + DP
Sbjct: 61 TPSWYTA-GEQEYFTDT-------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPN 112
Query: 164 -----EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216
YPGG FDPLG+ S PQK +E + KEIKNGRLA+LA +G Q Y GT
Sbjct: 113 NKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGT 171
Query: 217 GPLENLATHLADPWH 231
GP++NL HLADP H
Sbjct: 172 GPIDNLFAHLADPGH 186
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 108
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 109 GLGNWVQAQEWAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRSMEK----- 161
G W +A GG YLG P V ++ I + + + VE R
Sbjct: 93 GEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 151
Query: 162 -DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 VDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 207
Query: 221 NLATHLADPWHNN 233
NLA HLADP +NN
Sbjct: 208 NLADHLADPVNNN 220
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 111/215 (51%), Gaps = 33/215 (15%)
Query: 49 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 102
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 103 LVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTILVIEFLSIAFVEHQR-- 157
+ PE LG + + A+P + ++ GT W T+ V E + F EH+R
Sbjct: 118 IAPEILGKAGLIPQE--TALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQ 175
Query: 158 ------SMEKD-----------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLA 199
SM K + YPGG F+PLGF KD + ++ K+KE+KNGRLA
Sbjct: 176 DWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLA 235
Query: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
+LA +G+ V Q+ G GP +NL HL DP HNNI
Sbjct: 236 MLAILGYFV-QALVTGVGPYQNLLDHLTDPVHNNI 269
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 30/174 (17%)
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG 137
PENL + ++EL++ RWAML V G+L+PE + +W A G+ Y +
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEYFASS---- 54
Query: 138 TLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSK 180
T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F+
Sbjct: 55 --STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP 112
Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
E K KEI NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 113 TL----EAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 161
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 31/178 (17%)
Query: 74 LGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTP 133
L E PENL + ++EL++ RWAML V G+L+PE + +W A G+ Y +
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEYFASS 58
Query: 134 VPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPL 176
T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL
Sbjct: 59 ------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPL 112
Query: 177 GFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
F+ E K KEI NGRL +LAF+GF +Q + G GP +NL H++DPWHN I
Sbjct: 113 NFAPTL----EAKEKEIANGRL-MLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 164
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 78 PENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWG 137
PE+L ++EL+H RWAML GI +PE L + W G Q + T
Sbjct: 3 PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTA-GEQEYFTDT----- 56
Query: 138 TLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF- 178
T+ ++E + I + E +R + DP YPGG FDPLG+
Sbjct: 57 --TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 114
Query: 179 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238
S PQK +E + KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H I
Sbjct: 115 SASPQKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAF 173
Query: 239 IPR 241
P+
Sbjct: 174 TPK 176
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 85/164 (51%), Gaps = 26/164 (15%)
Query: 87 SELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYL---GTPVPWGTLPTIL 143
E+I+ R+AML G + PE LG + A+ A+P Q + GT W T+
Sbjct: 5 GEIINGRFAMLGAAGAIAPEILGKAGLIPAE--TALPWFQTGVIPPAGTYTYWADNYTLF 62
Query: 144 VIEFLSIAFVEHQR--------SMEKDP----EKK-------KYPGG-AFDPLGFSKDPQ 183
V+E + F EH+R SM K EK YPGG F+PLGF KD +
Sbjct: 63 VLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEK 122
Query: 184 KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
+E K+KE+KNGRLA+LA +G+ + Q G GP +NL HLA
Sbjct: 123 SLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHLA 165
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 28 FTAVSLPAAANATSKYAMSADWM-PGEPRPPYLDG-----------SAPGDFGFDPLRLG 75
+T L A +++ DW PG Y G + PG F+PL G
Sbjct: 59 YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFG 118
Query: 76 EVPENLERYKESELIHCRWAMLAVPGILV 104
+ ++L+ K E+ + R AMLA+ G +
Sbjct: 119 KDEKSLKELKLKEVKNGRLAMLAILGYFI 147
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 87 SELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVI 145
E+I+ R+AML G + PE LG +G Q A G GT W T+ V+
Sbjct: 18 GEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVL 77
Query: 146 EFLSIAFVEHQR--------SMEKDP----EKK-------KYPGG-AFDPLGFSKDPQKF 185
E + F EH+R SM K EK YPGG F+PLGF KD +
Sbjct: 78 EMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSL 137
Query: 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 221
+E K+KE+KNGRLA+LA +G+ + Q G GP +N
Sbjct: 138 KELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQN 172
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 28 FTAVSLPAAANATSKYAMSADWM-PGEPRPPYLDG-----------SAPGDFGFDPLRLG 75
+T L A +++ DW PG Y G + PG F+PL G
Sbjct: 72 YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 131
Query: 76 EVPENLERYKESELIHCRWAMLAVPGILV 104
+ ++L+ K E+ + R AMLA+ G +
Sbjct: 132 KDEKSLKELKLKEVKNGRLAMLAILGYFI 160
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 16 FPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRP 56
+ +++ S S FF A SL AA+ T M+ D + P P
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 45
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 16 FPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRP 56
+ +++ S S FF A SL AA+ T M+ D + P P
Sbjct: 5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,270,246
Number of Sequences: 62578
Number of extensions: 364909
Number of successful extensions: 862
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 24
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)