Query 025952
Match_columns 245
No_of_seqs 205 out of 1191
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00099 light-harvesting comp 100.0 1.1E-72 2.3E-77 501.1 17.1 243 1-245 1-243 (243)
2 PLN00187 photosystem II light- 100.0 4.9E-61 1.1E-65 433.9 16.0 191 45-239 51-285 (286)
3 PLN00101 Photosystem I light-h 100.0 1.7E-60 3.8E-65 424.0 16.2 181 45-238 52-249 (250)
4 PLN00098 light-harvesting comp 100.0 2.8E-59 6E-64 419.7 17.9 189 44-241 60-267 (267)
5 PLN00097 photosystem I light h 100.0 8.3E-59 1.8E-63 411.7 16.9 178 44-235 42-243 (244)
6 PLN00147 light-harvesting comp 100.0 1.1E-58 2.5E-63 413.0 14.8 190 43-240 42-251 (252)
7 PLN00100 light-harvesting comp 100.0 6E-58 1.3E-62 406.0 15.4 181 40-240 29-211 (246)
8 PLN00025 photosystem II light 100.0 3.6E-57 7.8E-62 405.0 15.6 191 45-237 50-254 (262)
9 PLN00048 photosystem I light h 100.0 2.7E-57 5.8E-62 406.4 14.1 188 44-240 40-261 (262)
10 PLN00171 photosystem light-ha 100.0 7.5E-56 1.6E-60 404.5 14.3 192 45-238 107-322 (324)
11 PLN00170 photosystem II light- 100.0 2.3E-49 5E-54 353.0 14.9 167 44-223 49-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 1.5E-49 3.2E-54 346.9 12.9 200 1-220 1-208 (209)
13 PLN00120 fucoxanthin-chlorophy 100.0 1.8E-43 3.9E-48 307.3 14.9 189 1-220 1-199 (202)
14 PF00504 Chloroa_b-bind: Chlor 100.0 3.6E-42 7.9E-47 286.8 12.8 143 55-210 1-155 (156)
15 PLN00101 Photosystem I light-h 99.5 5.3E-15 1.2E-19 132.4 5.1 53 166-219 68-121 (250)
16 PLN00098 light-harvesting comp 99.5 8.2E-15 1.8E-19 132.4 4.9 54 166-220 77-131 (267)
17 PLN00147 light-harvesting comp 99.5 1.4E-14 3.1E-19 129.9 3.9 55 56-110 172-226 (252)
18 PLN00048 photosystem I light h 99.4 3.6E-14 7.8E-19 128.0 3.4 51 60-110 186-236 (262)
19 PLN00170 photosystem II light- 99.4 1.3E-13 2.8E-18 123.7 5.1 51 166-217 72-123 (255)
20 PLN00187 photosystem II light- 99.4 9.6E-14 2.1E-18 126.4 3.6 52 59-110 210-261 (286)
21 PLN00097 photosystem I light h 99.4 1.6E-13 3.4E-18 122.6 4.9 52 166-218 59-111 (244)
22 PLN00171 photosystem light-ha 99.4 1.6E-13 3.5E-18 126.4 4.7 52 165-217 124-176 (324)
23 PLN00089 fucoxanthin-chlorophy 99.4 1.4E-13 3E-18 120.7 3.8 49 61-109 153-202 (209)
24 PLN00025 photosystem II light 99.4 2E-13 4.4E-18 123.1 4.8 50 166-216 68-118 (262)
25 PLN00100 light-harvesting comp 99.4 3.6E-13 7.8E-18 120.3 4.6 48 165-213 49-97 (246)
26 PF00504 Chloroa_b-bind: Chlor 99.3 4E-13 8.6E-18 112.0 2.6 49 58-106 107-155 (156)
27 PLN00099 light-harvesting comp 99.3 1E-12 2.2E-17 117.5 4.1 48 165-213 58-106 (243)
28 PLN00120 fucoxanthin-chlorophy 99.1 5.5E-11 1.2E-15 103.9 3.1 45 61-109 142-193 (202)
29 PLN00084 photosystem II subuni 98.1 1.7E-06 3.6E-11 73.7 2.7 43 182-225 129-172 (214)
30 PHA02337 putative high light i 98.0 4.1E-06 8.9E-11 53.6 2.4 28 190-218 4-31 (35)
31 PLN00014 light-harvesting-like 97.4 8.8E-05 1.9E-09 65.9 2.7 36 189-225 160-195 (250)
32 PHA02337 putative high light i 97.1 0.00019 4.2E-09 45.9 1.0 25 85-109 3-27 (35)
33 PLN00014 light-harvesting-like 94.5 0.011 2.3E-07 52.9 0.2 27 84-110 159-185 (250)
34 PLN00084 photosystem II subuni 91.4 0.066 1.4E-06 46.0 0.4 32 78-109 129-160 (214)
35 PLN02449 ferrochelatase 41.0 16 0.00034 36.4 1.7 22 198-220 463-484 (485)
36 PHA00649 hypothetical protein 36.8 23 0.0005 26.4 1.6 31 76-107 31-68 (83)
37 KOG2342 Uncharacterized conser 21.9 24 0.00053 32.6 -0.6 15 89-103 61-75 (280)
No 1
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.1e-72 Score=501.05 Aligned_cols=243 Identities=87% Similarity=1.460 Sum_probs=215.4
Q ss_pred CchhhhhhhhhhhcccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh
Q 025952 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN 80 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~ 80 (245)
|+|+++++|..+++-++++.+.|+ +|++..+.. -...+.|++++..|+|+.++|+||||++|||+|||||||++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~ 78 (243)
T PLN00099 1 MASNTLMSCGIAAVFPSLLSSSKS-KFASSVPLP-NANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN 78 (243)
T ss_pred CcchhhhhcCccccchhhhhhhhh-hhhcccccc-cCCccccccccccccCCCCCCccCCCCCCcccCCCccccccCHHH
Confidence 899999999986555555554444 454443322 234468889999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcc
Q 025952 81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 160 (245)
Q Consensus 81 l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~ 160 (245)
++||||+|||||||||||++|+++||+++.+.|+++.+|.+++++...|.+++.+|+.++.++++|+++||++|.+|+.+
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~ 158 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 158 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999988888988888888888888888888888888899999999999999988766
Q ss_pred cCCCCCCCCCCCCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 161 ~~~~~~~~PGd~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
++++++.||||.||||||.+|+++++++|+|||||||||||||+||++|+..+||++|++||.+|++||||+||.+.++|
T Consensus 159 ~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 159 KDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred CCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 65556789999999999999999999999999999999999999999999567999999999999999999999999999
Q ss_pred CCCCC
Q 025952 241 RGIVP 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
++++|
T Consensus 239 ~~~~~ 243 (243)
T PLN00099 239 RSISP 243 (243)
T ss_pred cCCCC
Confidence 99987
No 2
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=4.9e-61 Score=433.92 Aligned_cols=191 Identities=50% Similarity=0.893 Sum_probs=164.5
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh-------------------------------------------H
Q 025952 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN-------------------------------------------L 81 (245)
Q Consensus 45 ~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~-------------------------------------------l 81 (245)
.+..|+|+.++|+||||++|||||||||||++++|. +
T Consensus 51 ~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l 130 (286)
T PLN00187 51 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGL 130 (286)
T ss_pred CccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHH
Confidence 356799999999999999999999999999988875 6
Q ss_pred hHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc
Q 025952 82 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 161 (245)
Q Consensus 82 ~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~ 161 (245)
+||||+|||||||||||++||++||+++...|+++.... ..++. .|.+.+.+. .++.++++|+++||++|.+|+.+.
T Consensus 131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~-~~~g~-~y~g~~~p~-~~~~l~~iqvllmG~~E~~R~~~~ 207 (286)
T PLN00187 131 QRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKVE-LVDGS-SYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAEL 207 (286)
T ss_pred HHHHHHHhhhhHHHHHHhhchhhHHhccCCccccccccc-ccccc-cccccccch-hHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999999998655577654321 22222 366655443 356678899999999999998765
Q ss_pred CCCCCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCccccccccccc
Q 025952 162 DPEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239 (245)
Q Consensus 162 ~~~~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~ 239 (245)
+..+..|||| .|||||+.+|+++++++|++|||||||||+|++||++|+ .+||++|++||.+|++||+|+||++++.
T Consensus 208 ~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~-~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 208 DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQA-AATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 5556679999 799999999999999999999999999999999999999 7999999999999999999999998754
No 3
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1.7e-60 Score=423.97 Aligned_cols=181 Identities=48% Similarity=0.917 Sum_probs=153.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCC
Q 025952 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124 (245)
Q Consensus 45 ~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~ 124 (245)
.+..|+||.++|+||||++|||+|||||||++++++++|||++|||||||||||++|++++|+++..++...+.|.+ .
T Consensus 52 ~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~--a 129 (250)
T PLN00101 52 KKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYD--A 129 (250)
T ss_pred cccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCcccc--c
Confidence 36789999999999999999999999999999999999999999999999999999999999987655444444533 2
Q ss_pred CcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-----------------CCCCCCCCCCCCCCCCCCChHHHHH
Q 025952 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----------------PEKKKYPGGAFDPLGFSKDPQKFEE 187 (245)
Q Consensus 125 g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-----------------~~~~~~PGd~fDPlg~~~~~~~~~~ 187 (245)
+...|... ...++.+|+++|+++|++|+++.. +++..|||+.|||||+.++ ++
T Consensus 130 g~~~~~~~------~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~----~~ 199 (250)
T PLN00101 130 GKAEYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----EE 199 (250)
T ss_pred cchhhccc------chHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCccCccCCCcc----HH
Confidence 22233322 235777889999999999976421 1234699999999999876 37
Q ss_pred HhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccc
Q 025952 188 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238 (245)
Q Consensus 188 ~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~ 238 (245)
+|+||||||||||+|++||++|+ .+||++|++||.+|++||||+||++++
T Consensus 200 ~k~kEIKNGRLAM~A~lGf~~Q~-~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 200 AKEKELANGRLAMLAFLGFVVQH-NVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred HHHHHHhhcchHHHHHhhHhhee-hccCCChHHHHHHHhcCCcccchhhhc
Confidence 89999999999999999999999 799999999999999999999999874
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2.8e-59 Score=419.65 Aligned_cols=189 Identities=45% Similarity=0.857 Sum_probs=156.6
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccC
Q 025952 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVP 123 (245)
Q Consensus 44 ~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p 123 (245)
..+..|+|+.++|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++..+......|.+
T Consensus 60 ~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~-- 137 (267)
T PLN00098 60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYD-- 137 (267)
T ss_pred CCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccccccccc--
Confidence 345679999999999999999999999999999999999999999999999999999999999976443322222321
Q ss_pred CCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-----------------CCCCCCCCC-CCCCCCCCC-ChHH
Q 025952 124 GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----------------PEKKKYPGG-AFDPLGFSK-DPQK 184 (245)
Q Consensus 124 ~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-----------------~~~~~~PGd-~fDPlg~~~-~~~~ 184 (245)
.+...|...+ ..++++|+++||++|.+|+.+.. ..+.+|||| +||||||.+ |+++
T Consensus 138 Ag~~~~~~~~------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~ 211 (267)
T PLN00098 138 AGAREYFADP------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEP 211 (267)
T ss_pred ccchhhccCc------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHH
Confidence 1222233222 24567888899999999875421 013479999 699999975 8999
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCccccccccccccC
Q 025952 185 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 241 (245)
Q Consensus 185 ~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~~ 241 (245)
++++|+||||||||||+|++||++|+ .+||++|++||.+|++||+|+||++++.++
T Consensus 212 ~~~~k~kEikNGRLAM~A~~G~~~q~-~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 267 (267)
T PLN00098 212 VMVLRTKEIKNGRLAMLAFVGFCFQA-VYTGEGPIENLMAHLADPGHCNVFSAFTSH 267 (267)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-hhcCCChHHHHHHHhcCcccccchhhccCC
Confidence 99999999999999999999999999 799999999999999999999999987753
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=8.3e-59 Score=411.67 Aligned_cols=178 Identities=44% Similarity=0.811 Sum_probs=151.8
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCC------Cccccc
Q 025952 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG------NWVQAQ 117 (245)
Q Consensus 44 ~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~------~~~~a~ 117 (245)
..+..|+|+.++|+||||++|||||||||||++++++++||||+|||||||||||++|+++||+++.. .|+++.
T Consensus 42 ~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag 121 (244)
T PLN00097 42 ADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAA 121 (244)
T ss_pred CCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCC
Confidence 35578999999999999999999999999999999999999999999999999999999999998653 344433
Q ss_pred cccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC------------------CCCCCCCCCCCCCCCCC
Q 025952 118 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD------------------PEKKKYPGGAFDPLGFS 179 (245)
Q Consensus 118 ~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~------------------~~~~~~PGd~fDPlg~~ 179 (245)
++. .|.. ....++.+|+++|+++|.+|+++.. +++..|||+.|||||+.
T Consensus 122 ~~~-------~~~~------~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~ 188 (244)
T PLN00097 122 KWD-------GYWA------GAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWA 188 (244)
T ss_pred cch-------hccc------cchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccC
Confidence 221 1211 1234677888899999999976421 01235999899999999
Q ss_pred CChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCccccccc
Q 025952 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 235 (245)
Q Consensus 180 ~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~ 235 (245)
+|+++++++|+||||||||||+|++||++|+ .+||++|++||.+|++||+|+||+
T Consensus 189 ~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~-~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 189 KDEKKAAELKLKEIANGRLAMLAFLGCCAQA-IQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHhhhh-hccCCCHHHHHHHHhcCccccccC
Confidence 9999999999999999999999999999999 799999999999999999999986
No 6
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.1e-58 Score=412.98 Aligned_cols=190 Identities=43% Similarity=0.804 Sum_probs=158.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCcccccccccc
Q 025952 43 YAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV 122 (245)
Q Consensus 43 ~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~ 122 (245)
...++.|+|+.++|+||||++|||+|||||||++++++++||||+|||||||||||++|++++|+++..+....+.|...
T Consensus 42 ~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~a 121 (252)
T PLN00147 42 AQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEA 121 (252)
T ss_pred CCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhc
Confidence 45668899999999999999999999999999999999999999999999999999999999999875543222233221
Q ss_pred CCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-------------------CCCCCCCCC-CCCCCCCCCCh
Q 025952 123 PGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-------------------PEKKKYPGG-AFDPLGFSKDP 182 (245)
Q Consensus 123 p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-------------------~~~~~~PGd-~fDPlg~~~~~ 182 (245)
+...+ .+...+.++++|+++||++|.+|+.+.. ..+.+|||| +||||||.+|+
T Consensus 122 --g~~~~-----~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~ 194 (252)
T PLN00147 122 --GAVKF-----EFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDI 194 (252)
T ss_pred --ccchh-----ccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCH
Confidence 11111 1233456778899999999998864310 012469999 79999999999
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 183 QKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 183 ~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
++++++|+||||||||||+|++||++|+ .+||++|++||.+|++|||||||++++.+
T Consensus 195 ~~~~~~k~kEikNGRLAMlA~~G~~~q~-~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 195 ENAHDWKLKEIKNGRLAMVAMLGFFVQA-SVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 9999999999999999999999999999 79999999999999999999999987653
No 7
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=6e-58 Score=405.96 Aligned_cols=181 Identities=41% Similarity=0.668 Sum_probs=155.0
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccc
Q 025952 40 TSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119 (245)
Q Consensus 40 ~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~ 119 (245)
+.+++.+..|+|+.++|+||||++|||+|||||||++++++++||||+|||||||||||++|++++|++++++|+++..
T Consensus 29 ~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~- 107 (246)
T PLN00100 29 RVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWEAGA- 107 (246)
T ss_pred ccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhhcch-
Confidence 4455667789999999999999999999999999999999999999999999999999999999999998888865431
Q ss_pred cccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-CCCCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhH
Q 025952 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGR 197 (245)
Q Consensus 120 ~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-~~~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGR 197 (245)
..|. ...+.++++|+++||++|.+|+++.. .++.++||| +|||||+.+ +++|+|||||||
T Consensus 108 -------~~~~------~~~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGR 169 (246)
T PLN00100 108 -------EKYG------LDLQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PEMKVKEVKNGR 169 (246)
T ss_pred -------hhhc------cchhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HHHHHHHHhhhh
Confidence 1121 12356778898899999999876532 233457888 899999964 579999999999
Q ss_pred HHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 198 LALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 198 LAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
|||+||+||++|+ .+||++|++||.+|++||+|+||+++.+.
T Consensus 170 LAMlA~lG~~~Q~-~vTG~gPlenL~~hladP~~~ni~~~~~~ 211 (246)
T PLN00100 170 LAMLAFLGMVSQY-AVTGKSPLEGLKAHMANPGHVNIFTSSVG 211 (246)
T ss_pred HHHHHHHHHhhhh-hhcCCChHHHHHHhccCCcccccccCCCC
Confidence 9999999999999 79999999999999999999999986553
No 8
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=3.6e-57 Score=405.04 Aligned_cols=191 Identities=42% Similarity=0.716 Sum_probs=159.9
Q ss_pred ccccCC-CCC-CCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCC-------Cccc
Q 025952 45 MSADWM-PGE-PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG-------NWVQ 115 (245)
Q Consensus 45 ~~~~~~-p~~-~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~-------~~~~ 115 (245)
.+..|+ |+. ++|+||||++|||+|||||||++++++++||||+|||||||||||++|++++|+++.. .|++
T Consensus 50 ~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ 129 (262)
T PLN00025 50 DRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFK 129 (262)
T ss_pred CCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccc
Confidence 445688 666 6899999999999999999999999999999999999999999999999999997521 2554
Q ss_pred cccccccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCCCCCCCCCCCCCCCChHHHHHHhH
Q 025952 116 AQEWAAVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKFEEYKV 190 (245)
Q Consensus 116 a~~~~~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~fDPlg~~~~~~~~~~~k~ 190 (245)
+.. ..++++...|.++|. ++..++.++++|+++||++|.+|+.+.. ..+..||||.|||||+.+|+++++++|+
T Consensus 130 ag~-~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~ 208 (262)
T PLN00025 130 AGA-QIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKV 208 (262)
T ss_pred ccc-ccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHH
Confidence 432 122334445666663 2344566788899999999999976532 1235799999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCccccccccc
Q 025952 191 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDV 237 (245)
Q Consensus 191 kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~ 237 (245)
||||||||||+|++||++|+ .+||++|++||.+|++||+||||+++
T Consensus 209 kEikNGRLAMlA~~G~~~q~-~vTG~GPlenL~~hladP~~~n~~~~ 254 (262)
T PLN00025 209 KEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVANNAWAY 254 (262)
T ss_pred HHHhhhhHHHHHHHHHhhhh-hhcCCChHHHHHHHhcCccccchhhh
Confidence 99999999999999999999 79999999999999999999999874
No 9
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=2.7e-57 Score=406.40 Aligned_cols=188 Identities=41% Similarity=0.751 Sum_probs=153.1
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCcccCCCCCCh-----hhHhHHHHHhhhhcchhhhhcccchhhhhccCCC------
Q 025952 44 AMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVP-----ENLERYKESELIHCRWAMLAVPGILVPEALGLGN------ 112 (245)
Q Consensus 44 ~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~-----~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~------ 112 (245)
..+..|+|+.++|+||||++|||+|||||||++.. .+.+|+|++|||||||||||++|++++|+++..+
T Consensus 40 ~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~ 119 (262)
T PLN00048 40 ADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQET 119 (262)
T ss_pred CCCceecCCCCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccccc
Confidence 35678999999999999999999999999998521 2579999999999999999999999999986322
Q ss_pred ---ccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-C------------------CCCCCCC
Q 025952 113 ---WVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-P------------------EKKKYPG 170 (245)
Q Consensus 113 ---~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-~------------------~~~~~PG 170 (245)
|+++.+. .+.+...|...| ..++++|+++||++|.+|+++.. + ++..|||
T Consensus 120 ~~~w~~ag~~--~~~~~~~y~~~p------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG 191 (262)
T PLN00048 120 ALPWFQSGVI--PPAGTYDYWADP------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPG 191 (262)
T ss_pred cccccccccc--ccccccccccch------hHHHHHHHHHhhheeeeccccccCCCcccccccccchhcccccccccccc
Confidence 3332211 011111232222 24677889999999999876511 1 1346999
Q ss_pred C-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 171 G-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 171 d-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
| +|||||+.+|+++++++|++|||||||||+|++||++|+ .+||++|++||.+|++|||||||++++.+
T Consensus 192 ~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~-~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 192 GPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQA-LVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhh-hhcCCCHHHHHHHHhcCcccccccccccc
Confidence 9 799999999999999999999999999999999999999 79999999999999999999999998754
No 10
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=7.5e-56 Score=404.54 Aligned_cols=192 Identities=43% Similarity=0.747 Sum_probs=155.7
Q ss_pred ccccCCCCC--CCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCC--------Ccc
Q 025952 45 MSADWMPGE--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG--------NWV 114 (245)
Q Consensus 45 ~~~~~~p~~--~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~--------~~~ 114 (245)
.+..|+|+. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++.. .|+
T Consensus 107 ~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~ 186 (324)
T PLN00171 107 ERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWW 186 (324)
T ss_pred CCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCccchh
Confidence 345688776 6899999999999999999999999999999999999999999999999999986532 244
Q ss_pred ccccccccCCCcccccCCCC----CCCchhHHHHHHHHHHHHHHHhhhcccC---------CCCCCCCCC-CCCCCCCCC
Q 025952 115 QAQEWAAVPGGQATYLGTPV----PWGTLPTILVIEFLSIAFVEHQRSMEKD---------PEKKKYPGG-AFDPLGFSK 180 (245)
Q Consensus 115 ~a~~~~~~p~g~~~~~~~p~----~~~~~p~~~~~~~~~ig~~E~~r~~~~~---------~~~~~~PGd-~fDPlg~~~ 180 (245)
++.. ..+.+....|.+.|. .+..++.++++|+++++.+|++|+.+.+ +++-.|||+ +|||||+.+
T Consensus 187 ~aG~-~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~ 265 (324)
T PLN00171 187 RVGY-AKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSK 265 (324)
T ss_pred hccc-ccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcccCCCccccCC
Confidence 3321 112222223444442 1234556788898888888998875421 233357887 699999999
Q ss_pred ChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccc
Q 025952 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238 (245)
Q Consensus 181 ~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~ 238 (245)
|+++++++|++|||||||||+|++||++|+ .+||++|++||.+|++||+||||++++
T Consensus 266 d~~~~~~~k~kELkNGRLAM~A~lG~~vq~-~vTG~GPlenL~~hladP~~~Ni~~~~ 322 (324)
T PLN00171 266 DPVAFEDLKVKEIKNGRLAMVAWLGFYIQA-AVTGKGPVQNLVDHLSDPLHNNLLSSL 322 (324)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHhH-hhcCCChHHHHHHHhcCccccchHHHh
Confidence 999999999999999999999999999999 799999999999999999999999875
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=2.3e-49 Score=353.04 Aligned_cols=167 Identities=42% Similarity=0.747 Sum_probs=139.1
Q ss_pred cccccCCCCCC------CCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccc
Q 025952 44 AMSADWMPGEP------RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQ 117 (245)
Q Consensus 44 ~~~~~~~p~~~------~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~ 117 (245)
+.+..|+|+.. +|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++...|+++.
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~aG 128 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 128 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhCC
Confidence 45568999985 699999999999999999999999999999999999999999999999999998655677654
Q ss_pred cccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcccC-----------------------CCCCCCCCC-CC
Q 025952 118 EWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKD-----------------------PEKKKYPGG-AF 173 (245)
Q Consensus 118 ~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~~-----------------------~~~~~~PGd-~f 173 (245)
.- ++ +. .| + .+..++.+|+++||++|.+|+++.. .++..|||+ .|
T Consensus 129 ~~---~~----~~-~p--~-~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~F 197 (255)
T PLN00170 129 AD---PG----AI-AP--F-SFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFF 197 (255)
T ss_pred cc---cc----cc-Cc--c-chHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCccc
Confidence 21 00 11 11 1 1346788999999999999986421 123469998 69
Q ss_pred CCCCCCC---------ChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhH
Q 025952 174 DPLGFSK---------DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 223 (245)
Q Consensus 174 DPlg~~~---------~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~ 223 (245)
||||+.+ |+++++++|+||||||||||+|++||++|+ .||++||++|.
T Consensus 198 DPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa--~~g~~p~~~l~ 254 (255)
T PLN00170 198 DPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA--GQGKTPLGALG 254 (255)
T ss_pred CccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee--ccCCCchhhhc
Confidence 9999975 789999999999999999999999999999 48999999984
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=346.85 Aligned_cols=200 Identities=32% Similarity=0.392 Sum_probs=148.7
Q ss_pred CchhhhhhhhhhhcccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCC-Chh
Q 025952 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE-VPE 79 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~-~~~ 79 (245)
||++++++++++++| |+|++..+.++++. ...+.+..+...|+++.|..|||+ .||++||||||++ +++
T Consensus 1 Mk~~~~~~l~asaaA---FAPa~~~~~~~s~~------~~~~~~~~~g~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~ 70 (209)
T PLN00089 1 MKFAIFAALCASAAA---AAPAQKSRTRPATP------TAAAEDDCPGAIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEE 70 (209)
T ss_pred CchHHHHHHHHHhhc---cCCcccccchhhhh------hhhhhhhcccccccccCCccccCC-CCccCcCCccCCCCCHH
Confidence 999999999988888 99887533322222 111223334457899988899999 9999999999986 577
Q ss_pred hHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHH-HHHH-HHHHHHHHHhh
Q 025952 80 NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTI-LVIE-FLSIAFVEHQR 157 (245)
Q Consensus 80 ~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~-~~~~-~~~ig~~E~~r 157 (245)
+++||||+|||||||||||++|+++||.+++++... .|.++|++... +..++.. +++| +++||++|...
T Consensus 71 ~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~--~~~~~p~~~~a-------~~~~~~~g~~~Qi~~~ig~~E~~~ 141 (209)
T PLN00089 71 FLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY--SFAAIPKTIDA-------HDALLKSGAMIQIFAWIGFVDLAV 141 (209)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc--cccccccHHHH-------HHhhcccccHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999987765321 23334332211 1122222 2345 56899999642
Q ss_pred hcc---cCCCCCCCCCC-CCCCCCC-CCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchh
Q 025952 158 SME---KDPEKKKYPGG-AFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220 (245)
Q Consensus 158 ~~~---~~~~~~~~PGd-~fDPlg~-~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~ 220 (245)
... ...+++++||| +|||||| ++|+++++++|++||||||||||||+|+++|+ .+||++.++
T Consensus 142 ~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~-~~tg~g~~~ 208 (209)
T PLN00089 142 SAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGS-AITGHGFPY 208 (209)
T ss_pred hhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHcCCCCCc
Confidence 211 11134678999 8999999 56899999999999999999999999999999 789998764
No 13
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=307.26 Aligned_cols=189 Identities=25% Similarity=0.358 Sum_probs=137.0
Q ss_pred CchhhhhhhhhhhcccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCC--Ch
Q 025952 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--VP 78 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~--~~ 78 (245)
||+++++|++++++| |++++.++.++++...+. -+..+|..+| .++ |||+||++ ++
T Consensus 1 Mk~a~l~~l~~~a~a---Fap~~~~~~~~s~~~~~~----------~~~~~G~~~p--------~g~-fDPlgl~~~~~~ 58 (202)
T PLN00120 1 MKSALFASLIASAAA---FAPAQVAKARTSVATNMA----------FENELGAQAP--------LGF-FDPLGLVDDGDQ 58 (202)
T ss_pred ChHHHHHHHHHHHhc---cCCCCCCCCccccccccc----------chhccCCCCC--------CCC-CCCCccCCCCCH
Confidence 999999999988888 988875544333221111 1233576665 355 99999974 68
Q ss_pred hhHhHHHHHhhhhcchhhhhcccchhhhh-ccCCCcc--ccccccccCCCcccccCCCCCCCchhHHHHHH-HHHHHHHH
Q 025952 79 ENLERYKESELIHCRWAMLAVPGILVPEA-LGLGNWV--QAQEWAAVPGGQATYLGTPVPWGTLPTILVIE-FLSIAFVE 154 (245)
Q Consensus 79 ~~l~~~ReAELkHGRvAMLAvvG~lv~E~-~~~~~~~--~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~-~~~ig~~E 154 (245)
++++|||++|||||||||||++|++++|. +++++.. ...+|.++|++.. ++..+|..+++| +++||++|
T Consensus 59 ~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~-------a~~~vp~~g~~qi~~~ig~~E 131 (202)
T PLN00120 59 EKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFA-------ALDAIPTAGLLQILAFIGFLE 131 (202)
T ss_pred HHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchh-------hhhhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 4444322 1223444433321 234556656666 67999999
Q ss_pred HhhhcccCCCCCCCCCC---CCCCCCCCC-ChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchh
Q 025952 155 HQRSMEKDPEKKKYPGG---AFDPLGFSK-DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220 (245)
Q Consensus 155 ~~r~~~~~~~~~~~PGd---~fDPlg~~~-~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~ 220 (245)
..+..+.. +++++||| ++++|||.. |+++++++|+|||||||||||||+||++|+ .++|+.|+-
T Consensus 132 ~~~~~~~~-~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe-~l~g~~~~~ 199 (202)
T PLN00120 132 LAVMKDIT-GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHE-QLGVELPII 199 (202)
T ss_pred HHhhcccc-cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCcCC
Confidence 87654321 23578997 233677765 889999999999999999999999999999 799998863
No 14
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=3.6e-42 Score=286.76 Aligned_cols=143 Identities=46% Similarity=0.723 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCcc----ccccccccCCCccccc
Q 025952 55 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV----QAQEWAAVPGGQATYL 130 (245)
Q Consensus 55 ~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~----~a~~~~~~p~g~~~~~ 130 (245)
+|++|||+++||+|||||||++++ +++||||+|||||||||||++|++++|+++..++. ....|.+..+
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 589999999999999999999986 99999999999999999999999999997532221 1111221110
Q ss_pred CCCCCCCchh-HHHHHHHHHHHHHHHhhhcccC------CCCCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHH
Q 025952 131 GTPVPWGTLP-TILVIEFLSIAFVEHQRSMEKD------PEKKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLA 202 (245)
Q Consensus 131 ~~p~~~~~~p-~~~~~~~~~ig~~E~~r~~~~~------~~~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMla 202 (245)
.. ++ ..+++++++|+++|.++..... ..+..|||| +|||+|+.+|+++++++|++|||||||||||
T Consensus 74 -----~~-~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla 147 (156)
T PF00504_consen 74 -----IP-VPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLA 147 (156)
T ss_dssp -----SS-SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHH
T ss_pred -----hh-hhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 01 23 3444568899999998765431 124579999 7999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 025952 203 FVGFCVQQ 210 (245)
Q Consensus 203 i~G~~~q~ 210 (245)
|+|+++||
T Consensus 148 ~~g~~~~e 155 (156)
T PF00504_consen 148 FAGFVAQE 155 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999997
No 15
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.54 E-value=5.3e-15 Score=132.45 Aligned_cols=53 Identities=32% Similarity=0.708 Sum_probs=49.9
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCch
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl 219 (245)
+.+||| +|||||+.+|+++++++|++||+|||+||+|++|+++|| .+++.+++
T Consensus 68 G~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e-~l~~~g~~ 121 (250)
T PLN00101 68 GSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPE-VFTKIGII 121 (250)
T ss_pred CCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HhcCCCCc
Confidence 568999 999999999999999999999999999999999999999 78888876
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.52 E-value=8.2e-15 Score=132.36 Aligned_cols=54 Identities=31% Similarity=0.617 Sum_probs=49.7
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchh
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~ 220 (245)
+.+||| +|||||+.+|+++++++|++||||||+||+|++|+++|| ++++.++++
T Consensus 77 G~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e-~l~~~g~~~ 131 (267)
T PLN00098 77 GSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPE-CLERLGFIE 131 (267)
T ss_pred CCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HhcCCCccc
Confidence 568999 899999999999999999999999999999999999999 677777665
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.49 E-value=1.4e-14 Score=129.91 Aligned_cols=55 Identities=31% Similarity=0.389 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccC
Q 025952 56 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110 (245)
Q Consensus 56 P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~ 110 (245)
+..+++.+|||++||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg 226 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTH 226 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 4466778999999999999999999999999999999999999999999998753
No 18
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.45 E-value=3.6e-14 Score=128.03 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=47.5
Q ss_pred CCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccC
Q 025952 60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110 (245)
Q Consensus 60 ~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~ 110 (245)
|..+|||++||||||++++++++++|..||||||+||+|++|+++|++++.
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg 236 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTG 236 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcC
Confidence 456999999999999999999999999999999999999999999998753
No 19
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.42 E-value=1.3e-13 Score=123.74 Aligned_cols=51 Identities=43% Similarity=0.748 Sum_probs=47.3
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCC
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~g 217 (245)
+.+||| +|||||+.+|+++++++|++||+|||+||+|++|+++|| .++|..
T Consensus 72 g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e-~l~g~~ 123 (255)
T PLN00170 72 GSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ-AWSGIP 123 (255)
T ss_pred ccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHH-HccCCC
Confidence 568999 899999999999999999999999999999999999999 677754
No 20
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.41 E-value=9.6e-14 Score=126.40 Aligned_cols=52 Identities=37% Similarity=0.411 Sum_probs=47.9
Q ss_pred CCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccC
Q 025952 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110 (245)
Q Consensus 59 l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~ 110 (245)
.+..+|||++||||||++++++++++|+.||||||+||+|++|+++|+.++.
T Consensus 210 ~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg 261 (286)
T PLN00187 210 EKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 261 (286)
T ss_pred CCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 3566899988999999999999999999999999999999999999998753
No 21
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.41 E-value=1.6e-13 Score=122.57 Aligned_cols=52 Identities=25% Similarity=0.483 Sum_probs=47.6
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCc
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 218 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gP 218 (245)
+..||| +||||||++|+++++++|++||+|||+||+|++|+++|| ++++.+.
T Consensus 59 G~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e-~l~~~g~ 111 (244)
T PLN00097 59 GSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPE-LLTKIGM 111 (244)
T ss_pred CCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHH-HhcCCCc
Confidence 467999 899999999999999999999999999999999999999 6776543
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.41 E-value=1.6e-13 Score=126.44 Aligned_cols=52 Identities=35% Similarity=0.567 Sum_probs=47.1
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCC
Q 025952 165 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217 (245)
Q Consensus 165 ~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~g 217 (245)
++.+||| +|||||+++|+++++++|+.||||||+||+|++|+++|| ++++.+
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e-~l~~~g 176 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPE-VLDLFG 176 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHH-HhccCC
Confidence 3578999 999999999999999999999999999999999999999 666544
No 23
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.40 E-value=1.4e-13 Score=120.73 Aligned_cols=49 Identities=41% Similarity=0.622 Sum_probs=45.4
Q ss_pred CCCCCCCCcccCCCC-CChhhHhHHHHHhhhhcchhhhhcccchhhhhcc
Q 025952 61 GSAPGDFGFDPLRLG-EVPENLERYKESELIHCRWAMLAVPGILVPEALG 109 (245)
Q Consensus 61 g~~pgd~gFDPLGLa-~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~ 109 (245)
+..|||+|||||||. +|+++++++|..||||||+||+|++|++++|.++
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~t 202 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAIT 202 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 468999999999995 5889999999999999999999999999999864
No 24
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.40 E-value=2e-13 Score=123.09 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=46.1
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCC
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 216 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~ 216 (245)
+.+||| +||||||++|+++++++|+.||+|||+||+|++|+++|| ++++.
T Consensus 68 g~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e-~l~~~ 118 (262)
T PLN00025 68 GEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPE-LLAKN 118 (262)
T ss_pred CcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHH-HhhcC
Confidence 467999 999999999999999999999999999999999999999 66644
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.37 E-value=3.6e-13 Score=120.28 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=44.9
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccc
Q 025952 165 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213 (245)
Q Consensus 165 ~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~ 213 (245)
++.+||| +|||||+.+++++++++|++||||||+||+|++|+++|| ++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E-~~ 97 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTD-AV 97 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHH-Hh
Confidence 4578999 899999999999999999999999999999999999999 55
No 26
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.34 E-value=4e-13 Score=111.95 Aligned_cols=49 Identities=47% Similarity=0.684 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhh
Q 025952 58 YLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106 (245)
Q Consensus 58 ~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E 106 (245)
..++..|||++|||+|+.++++..+++|.+||||||+||+|++|++++|
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678899999999999998889999999999999999999999999987
No 27
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.32 E-value=1e-12 Score=117.54 Aligned_cols=48 Identities=38% Similarity=0.634 Sum_probs=44.8
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccc
Q 025952 165 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213 (245)
Q Consensus 165 ~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~ 213 (245)
++.+||| +|||||+++++++++++|+.||||||.||+|++|+++|| ++
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E-~l 106 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE-AL 106 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHH-Hh
Confidence 4578999 999999999999999999999999999999999999999 44
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.08 E-value=5.5e-11 Score=103.93 Aligned_cols=45 Identities=33% Similarity=0.509 Sum_probs=38.2
Q ss_pred CCCCCC-------CCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhcc
Q 025952 61 GSAPGD-------FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 109 (245)
Q Consensus 61 g~~pgd-------~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~ 109 (245)
+..||| +||||+ +++..+++|..||||||+||+|+.|++++|.++
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 567774 556665 678899999999999999999999999999864
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.10 E-value=1.7e-06 Score=73.74 Aligned_cols=43 Identities=37% Similarity=0.502 Sum_probs=37.8
Q ss_pred hHHHHHHhHHHHhhhHHHHHHHHHHHHhccccc-CCCchhhhHHh
Q 025952 182 PQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP-GTGPLENLATH 225 (245)
Q Consensus 182 ~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~t-G~gPl~~L~~h 225 (245)
+...++.|..|+.||||||+||+--++-| .+| |+||+.|+...
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~alitE-~lTgGqGiL~Ql~~E 172 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAFAIAGD-AVTGGMGPLEQFNGE 172 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHH-HHhCCcchHHHhccc
Confidence 35667888899999999999999999999 788 99999998644
No 30
>PHA02337 putative high light inducible protein
Probab=98.00 E-value=4.1e-06 Score=53.57 Aligned_cols=28 Identities=36% Similarity=0.321 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhcccccCCCc
Q 025952 190 VKEIKNGRLALLAFVGFCVQQSAYPGTGP 218 (245)
Q Consensus 190 ~kELkNGRLAMlai~G~~~q~~~~tG~gP 218 (245)
..|+-||||||+||...+.-| .+||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e-~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAY-ATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-HHhCCCC
Confidence 479999999999999999999 7889864
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.42 E-value=8.8e-05 Score=65.94 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=32.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHh
Q 025952 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 225 (245)
Q Consensus 189 k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h 225 (245)
...|+-|||+|||||+..++-| .+||++.+.|+...
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E-~~TG~gll~Qlg~f 195 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVD-SLTGVGLVDQMGNF 195 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHH-HHcCCcHHHHHhhh
Confidence 4589999999999999999999 78999999998753
No 32
>PHA02337 putative high light inducible protein
Probab=97.10 E-value=0.00019 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.7
Q ss_pred HHHhhhhcchhhhhcccchhhhhcc
Q 025952 85 KESELIHCRWAMLAVPGILVPEALG 109 (245)
Q Consensus 85 ReAELkHGRvAMLAvvG~lv~E~~~ 109 (245)
.+||+.|||+||++++-.++.|+++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~t 27 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATT 27 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999865
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=94.54 E-value=0.011 Score=52.89 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.4
Q ss_pred HHHHhhhhcchhhhhcccchhhhhccC
Q 025952 84 YKESELIHCRWAMLAVPGILVPEALGL 110 (245)
Q Consensus 84 ~ReAELkHGRvAMLAvvG~lv~E~~~~ 110 (245)
+.++|+.|||+||+|++-.++.|+++.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG 185 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTG 185 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcC
Confidence 568999999999999999999998754
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=91.39 E-value=0.066 Score=46.04 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.3
Q ss_pred hhhHhHHHHHhhhhcchhhhhcccchhhhhcc
Q 025952 78 PENLERYKESELIHCRWAMLAVPGILVPEALG 109 (245)
Q Consensus 78 ~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~ 109 (245)
+.+.+..+.-|+.+||+|||+++--++.|+++
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~alitE~lT 160 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAFAIAGDAVT 160 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 35677788899999999999999999999986
No 35
>PLN02449 ferrochelatase
Probab=40.99 E-value=16 Score=36.39 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcccccCCCchh
Q 025952 198 LALLAFVGFCVQQSAYPGTGPLE 220 (245)
Q Consensus 198 LAMlai~G~~~q~~~~tG~gPl~ 220 (245)
+||+||+.+++-| +++|.||+.
T Consensus 463 ~~~~~~~~~~~~~-~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLE-VTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHH-HHcCCCcCC
Confidence 9999999999899 799999974
No 36
>PHA00649 hypothetical protein
Probab=36.83 E-value=23 Score=26.35 Aligned_cols=31 Identities=32% Similarity=0.625 Sum_probs=22.3
Q ss_pred CChhhHhHHHHHhhhhcc-------hhhhhcccchhhhh
Q 025952 76 EVPENLERYKESELIHCR-------WAMLAVPGILVPEA 107 (245)
Q Consensus 76 ~~~~~l~~~ReAELkHGR-------vAMLAvvG~lv~E~ 107 (245)
++|+..+.||| .+.||| -.||+++|..+..+
T Consensus 31 ~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 31 DVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 46777777775 677777 36899999776654
No 37
>KOG2342 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=24 Score=32.55 Aligned_cols=15 Identities=33% Similarity=0.129 Sum_probs=12.2
Q ss_pred hhhcchhhhhcccch
Q 025952 89 LIHCRWAMLAVPGIL 103 (245)
Q Consensus 89 LkHGRvAMLAvvG~l 103 (245)
=||||||||=-++-+
T Consensus 61 ~~~GRvafLln~~~~ 75 (280)
T KOG2342|consen 61 TKHGRVAFLLNIKQL 75 (280)
T ss_pred cCCceEEEEEecccc
Confidence 489999999888733
Done!