Query 025952
Match_columns 245
No_of_seqs 205 out of 1191
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.2E-69 4.2E-74 480.5 9.6 241 1-242 1-241 (241)
2 3pl9_A Chlorophyll A-B binding 100.0 1.3E-61 4.3E-66 428.2 8.9 191 45-239 10-243 (243)
3 2bhw_A Chlorophyll A-B binding 100.0 3.1E-57 1.1E-61 399.8 15.7 192 45-238 20-225 (232)
4 2wsc_2 LHCA2, type II chloroph 100.0 8.6E-57 2.9E-61 403.6 1.8 187 45-241 63-269 (269)
5 2wsc_4 Chlorophyll A-B binding 100.0 6.3E-56 2.2E-60 395.1 2.0 181 46-240 53-250 (251)
6 2wsc_3 LHCA3, type II chloroph 100.0 4.4E-55 1.5E-59 393.8 5.7 188 45-240 55-275 (276)
7 3pl9_A Chlorophyll A-B binding 99.4 2.7E-14 9.2E-19 126.1 2.9 49 61-110 171-219 (243)
8 2wsc_4 Chlorophyll A-B binding 99.4 3.8E-14 1.3E-18 126.1 1.0 53 166-219 68-121 (251)
9 2wsc_3 LHCA3, type II chloroph 99.4 3.9E-14 1.3E-18 127.5 0.8 52 59-110 199-250 (276)
10 2bhw_A Chlorophyll A-B binding 99.4 2.4E-13 8.3E-18 119.7 5.6 49 165-214 37-86 (232)
11 2wsc_2 LHCA2, type II chloroph 99.4 7.4E-14 2.5E-18 125.2 1.6 54 59-112 191-245 (269)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 9.3E-13 3.2E-17 116.5 1.2 47 166-213 60-107 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 56.0 6.1 0.00021 22.3 1.7 15 78-92 6-20 (26)
No 1
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.2e-69 Score=480.49 Aligned_cols=241 Identities=81% Similarity=1.359 Sum_probs=155.6
Q ss_pred CchhhhhhhhhhhcccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh
Q 025952 1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN 80 (245)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~ 80 (245)
|++..+.||.+++++.|.++++++++++++.+.++ ...++|+++++.|+|+.++|+||||++|||+|||||||++++++
T Consensus 1 ~~~~~~~~~~~~a~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~ 79 (241)
T 2wsc_1 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPN-AGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPAN 79 (241)
T ss_dssp -------------------------------------------------------------CTTSSCCCSSTTTTTTTTH
T ss_pred CchHHHHHHHHHhcCccccchhhhhhccccCcccc-cccccccccccccCCCCCCcccccCCCCCcCCcCccccCCCHHH
Confidence 88888888888887766677777666566655544 35578999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcc
Q 025952 81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME 160 (245)
Q Consensus 81 l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~ 160 (245)
++||||+|||||||||||++|++++|+++.++|.++.+|.+++++.+.|.+.+++|+.+++++++|+++||++|.+|..+
T Consensus 80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~ 159 (241)
T 2wsc_1 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 159 (241)
T ss_dssp HHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC
T ss_pred HHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998888988888888999888888888889889999999999999999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 161 ~~~~~~~~PGd~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
++++++.||||.|||||+.+|+++++++|.+|||||||||+|++|+++|+..+||++|++||.+|++|||||||.++++|
T Consensus 160 ~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 160 KDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp CSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred cCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 66667789999999999999999999999999999999999999999999557999999999999999999999999998
Q ss_pred CC
Q 025952 241 RG 242 (245)
Q Consensus 241 ~~ 242 (245)
++
T Consensus 240 ~~ 241 (241)
T 2wsc_1 240 FN 241 (241)
T ss_dssp --
T ss_pred CC
Confidence 74
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.3e-61 Score=428.16 Aligned_cols=191 Identities=48% Similarity=0.874 Sum_probs=133.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChh-------------------------------------------hH
Q 025952 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NL 81 (245)
Q Consensus 45 ~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~-------------------------------------------~l 81 (245)
.+..|+||.++|+||||++|||||||||||++++| ++
T Consensus 10 ~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (243)
T 3pl9_A 10 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGL 89 (243)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhh
Confidence 45789999999999999999999999999999876 38
Q ss_pred hHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc
Q 025952 82 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK 161 (245)
Q Consensus 82 ~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~ 161 (245)
+||||+|||||||||||++|++++|+++...|+++.... +.++ ..|.+++.++ .++.++++|+++||++|.+|+++.
T Consensus 90 ~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~-~~~g-~~y~g~p~~~-~i~~l~~~qv~lmG~~E~~R~~~~ 166 (243)
T 3pl9_A 90 QRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVE-LIEG-SSYLGQPLPF-SMTTLIWIEVLVIGYIEFQRNAEL 166 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-HHSC-EEETTEEECC-CHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccc-cccc-cccccCccch-hhHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998766687654321 1122 2355554433 466788899999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCccccccccccc
Q 025952 162 DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239 (245)
Q Consensus 162 ~~~~~~~PGd~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~ 239 (245)
++++..||||.|||||+.+|+++++++|.+|||||||||+|++|+++|+ .+||+||++||.+|++||+||||+++++
T Consensus 167 ~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~-~vtG~Gpl~~l~~HladP~~~ni~~~~~ 243 (243)
T 3pl9_A 167 DTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQA-AVTGKGPLNNWVTHLSDPLHTTILDRFL 243 (243)
T ss_dssp CTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSCHHHHHHHHHHCSGGGSTTTTTC
T ss_pred CCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HhcCCChHHHHHHHhcCcchhhhhhhcC
Confidence 6666689999999999999999999999999999999999999999999 7999999999999999999999998764
No 3
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=3.1e-57 Score=399.83 Aligned_cols=192 Identities=41% Similarity=0.707 Sum_probs=157.4
Q ss_pred ccccCCCC--CCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCC-------ccc
Q 025952 45 MSADWMPG--EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGN-------WVQ 115 (245)
Q Consensus 45 ~~~~~~p~--~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~-------~~~ 115 (245)
.+..|+|+ .++|+||||++|||+|||||||++++++++||||+|||||||||||++|++++|+++..+ |++
T Consensus 20 ~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ 99 (232)
T 2bhw_A 20 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFK 99 (232)
T ss_dssp TCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGG
T ss_pred CcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCccccccc
Confidence 44678865 389999999999999999999999999999999999999999999999999999875422 433
Q ss_pred cccccccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCCCCCCCCCCCCCCCChHHHHHHhH
Q 025952 116 AQEWAAVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKFEEYKV 190 (245)
Q Consensus 116 a~~~~~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~fDPlg~~~~~~~~~~~k~ 190 (245)
+.. ..+.++...|.++|. .++.+..++++|+++||++|.+|+.+.. ..+..||||.|||||+.+|+++++++|.
T Consensus 100 ag~-~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~ 178 (232)
T 2bhw_A 100 AGS-QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 178 (232)
T ss_dssp SGG-GGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHH
T ss_pred ccc-hhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHH
Confidence 221 011122224555553 2334556778898899999999876421 1245799999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccc
Q 025952 191 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 238 (245)
Q Consensus 191 kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~ 238 (245)
+|||||||||+|++|+++|+ .+||++|++||.+|++|||||||.++.
T Consensus 179 ~E~~nGRlAM~~~~g~~~~~-~~tg~g~~~~l~~~~adP~~~n~~~~~ 225 (232)
T 2bhw_A 179 KELKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWSYA 225 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCSCSHHHHHHHHHCTTTSSGGGGT
T ss_pred hhhhccchHHHHHHHHHHHH-HhcCCChHHHHHHHhcChHHhHHHHHH
Confidence 99999999999999999999 799999999999999999999999853
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=8.6e-57 Score=403.62 Aligned_cols=187 Identities=45% Similarity=0.859 Sum_probs=125.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCC
Q 025952 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPG 124 (245)
Q Consensus 45 ~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~ 124 (245)
.+..|+||.++|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|+++..++.....|.+ .
T Consensus 63 ~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~--a 140 (269)
T 2wsc_2 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT--A 140 (269)
T ss_dssp -------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCS--T
T ss_pred CcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccc--c
Confidence 46789999999999999999999999999999999999999999999999999999999999987544433333322 1
Q ss_pred CcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc-C----------------CCCCCCCCC-CCCCCCCCC-ChHHH
Q 025952 125 GQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-D----------------PEKKKYPGG-AFDPLGFSK-DPQKF 185 (245)
Q Consensus 125 g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~-~----------------~~~~~~PGd-~fDPlg~~~-~~~~~ 185 (245)
+...|. ...+.++++|+++||++|.+|+.+. . ..+..|||| +|||||+.+ |++++
T Consensus 141 G~~~~~------~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~ 214 (269)
T 2wsc_2 141 GEQEYF------TDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKL 214 (269)
T ss_dssp TSSSSC------CCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSC
T ss_pred chhhhh------cchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHH
Confidence 222232 2223456778889999999987531 0 113479999 699999975 77889
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhH-HhhcCccccccccccccC
Q 025952 186 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA-THLADPWHNNIGDVIIPR 241 (245)
Q Consensus 186 ~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~-~h~~~P~~~n~~~~~~~~ 241 (245)
+++|.+||||||||||||+|+++|+ .+||++|++||. +|++|| ||||++++.++
T Consensus 215 ~~~~~~Ei~nGRlAMla~~g~~~~~-~~tg~g~l~~l~~~HladP-~~n~~~~~~~~ 269 (269)
T 2wsc_2 215 KELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAAHLADP-HATIFAAFTPK 269 (269)
T ss_dssp TTSTTTTHHHHHHHHTTTSSSCHHH-HHTTTCSSCCCSCCCCCCS-CCCCCSSSCCC
T ss_pred HHHHHhhcccchHHHHHHHHHHHHH-HhcCCChHHHHHHHHhcCc-ccchhhhccCC
Confidence 9999999999999999999999999 799999999999 999999 99999988764
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=6.3e-56 Score=395.09 Aligned_cols=181 Identities=45% Similarity=0.870 Sum_probs=120.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCC
Q 025952 46 SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGG 125 (245)
Q Consensus 46 ~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g 125 (245)
+.+|+|+.++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..++.....|.+ .+
T Consensus 53 r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~--aG 130 (251)
T 2wsc_4 53 KGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AG 130 (251)
T ss_dssp ----------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSC--CC
T ss_pred hhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccc--cc
Confidence 6789999999999999999999999999999999999999999999999999999999999987654443333422 23
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc----C----C---------CCCCCCCCCCCCCCCCCChHHHHHH
Q 025952 126 QATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK----D----P---------EKKKYPGGAFDPLGFSKDPQKFEEY 188 (245)
Q Consensus 126 ~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~----~----~---------~~~~~PGd~fDPlg~~~~~~~~~~~ 188 (245)
...|...+ +.++++|+++||++|.+|+.+. . + .+..||||.|||||+.+ ++++
T Consensus 131 ~~~~~~~~------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~----~~~~ 200 (251)
T 2wsc_4 131 KEEYFASS------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP----TLEA 200 (251)
T ss_dssp SSSCSSCS------SCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCS----SSSC
T ss_pred hHhhhccc------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCccCccchhH----HHHH
Confidence 33343322 2345567788999999886531 0 0 02368999999999976 5688
Q ss_pred hHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 189 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 189 k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
|+|||||||| ||||+||++|+ .+||++|++||.+|++|||||||++++..
T Consensus 201 k~kELkNGRL-MlAilGf~vQe-~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQH-NVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHH-TTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred HHHHHhcchh-HHHHHHHHHHH-HhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 9999999999 99999999999 89999999999999999999999997653
No 6
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=4.4e-55 Score=393.76 Aligned_cols=188 Identities=41% Similarity=0.744 Sum_probs=101.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhhH------hHHHHHhhhhcchhhhhcccchhhhhccCCCcc--cc
Q 025952 45 MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENL------ERYKESELIHCRWAMLAVPGILVPEALGLGNWV--QA 116 (245)
Q Consensus 45 ~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l------~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~--~a 116 (245)
.+..|+|+.++|+||||++|||+||||||| .+++++ +||||+|||||||||||++|++++|+++..+.. +.
T Consensus 55 ~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~ 133 (276)
T 2wsc_3 55 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQET 133 (276)
T ss_dssp -------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSS
T ss_pred CccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccC
Confidence 456799999999999999999999999999 567888 999999999999999999999999998754432 11
Q ss_pred c-cccc---cC-CCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhccc-------------------CCCCCCCCCC-
Q 025952 117 Q-EWAA---VP-GGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEK-------------------DPEKKKYPGG- 171 (245)
Q Consensus 117 ~-~~~~---~p-~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~~-------------------~~~~~~~PGd- 171 (245)
. .|.+ +| .+...|. +..+.++++|+++||++|.+|+++. ...+..||||
T Consensus 134 p~~w~~~g~ip~aG~~~~~------~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~ 207 (276)
T 2wsc_3 134 ALPWFRTGFIPPAGTYNYW------ADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGP 207 (276)
T ss_dssp CCSSSSCCCC-----CCCS------CCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSS
T ss_pred cchhhhhhcccchhHHHHh------ccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcc
Confidence 1 1322 11 1222232 2223456778889999999886531 0113479999
Q ss_pred CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952 172 AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240 (245)
Q Consensus 172 ~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~ 240 (245)
+||||||.+|+++++++|.+|||||||||+|++|+++|+ .+||++|++||.+|++|||||||++++.+
T Consensus 208 ~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~-~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 208 FFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQA-LVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSC-CCCSSCCSCC-------------------
T ss_pred cccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcCCChHHHHHHhccCcccchhhhhccC
Confidence 699999998888899999999999999999999999999 89999999999999999999999998765
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.44 E-value=2.7e-14 Score=126.15 Aligned_cols=49 Identities=35% Similarity=0.461 Sum_probs=45.8
Q ss_pred CCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccC
Q 025952 61 GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110 (245)
Q Consensus 61 g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~ 110 (245)
..+|||+ ||||||++++++++|+|++||||||+||+|++|++++|+++.
T Consensus 171 ~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG 219 (243)
T 3pl9_A 171 RLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTG 219 (243)
T ss_dssp TTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcC
Confidence 3589999 999999999999999999999999999999999999998754
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.39 E-value=3.8e-14 Score=126.10 Aligned_cols=53 Identities=32% Similarity=0.713 Sum_probs=38.4
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCch
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 219 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl 219 (245)
+.+||| +|||||+++|+++++++|.+||||||+||+|++|+++|| ++++.+.+
T Consensus 68 g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e-~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPE-VFTSIGII 121 (251)
T ss_dssp -------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTS-SSCCSCSS
T ss_pred CCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHH-HhcCCCcc
Confidence 468999 899999999999999999999999999999999999999 78887766
No 9
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.39 E-value=3.9e-14 Score=127.48 Aligned_cols=52 Identities=31% Similarity=0.393 Sum_probs=42.9
Q ss_pred CCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccC
Q 025952 59 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 110 (245)
Q Consensus 59 l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~ 110 (245)
.|..+|||++||||||++++++++++|++||||||+||||++|++++|+++.
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg 250 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTG 250 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCS
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 3567899999999999988788999999999999999999999999999764
No 10
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.39 E-value=2.4e-13 Score=119.67 Aligned_cols=49 Identities=27% Similarity=0.555 Sum_probs=45.1
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhccccc
Q 025952 165 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214 (245)
Q Consensus 165 ~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~t 214 (245)
++.+||| +|||||+++|+++++++|+.||||||+||+|++|++++| +++
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E-~l~ 86 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPE-LLS 86 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHH-Hhc
Confidence 3568999 899999999999999999999999999999999999999 443
No 11
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.37 E-value=7.4e-14 Score=125.22 Aligned_cols=54 Identities=33% Similarity=0.473 Sum_probs=48.0
Q ss_pred CCCCCCCCCCcccCCCCC-ChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCC
Q 025952 59 LDGSAPGDFGFDPLRLGE-VPENLERYKESELIHCRWAMLAVPGILVPEALGLGN 112 (245)
Q Consensus 59 l~g~~pgd~gFDPLGLa~-~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~ 112 (245)
.|..+|||++||||||++ ++++++++|++||||||+||+|++|++++|.++..+
T Consensus 191 ~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g 245 (269)
T 2wsc_2 191 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 245 (269)
T ss_dssp TSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTC
T ss_pred cccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCC
Confidence 355789999999999985 678899999999999999999999999999976543
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.25 E-value=9.3e-13 Score=116.48 Aligned_cols=47 Identities=40% Similarity=0.684 Sum_probs=43.4
Q ss_pred CCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccc
Q 025952 166 KKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 213 (245)
Q Consensus 166 ~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~ 213 (245)
+.+||| +|||+|+++|+++++++|+.||||||+||+|++|+++|| ++
T Consensus 60 G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e-~~ 107 (241)
T 2wsc_1 60 GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPE-AL 107 (241)
T ss_dssp -CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTT-CC
T ss_pred CCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchh-hc
Confidence 357999 899999999999999999999999999999999999999 54
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=55.96 E-value=6.1 Score=22.31 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=12.6
Q ss_pred hhhHhHHHHHhhhhc
Q 025952 78 PENLERYKESELIHC 92 (245)
Q Consensus 78 ~~~l~~~ReAELkHG 92 (245)
++-++.+||+|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 577899999999864
Done!