Query 025952
Match_columns 245
No_of_seqs 205 out of 1191
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 21:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 100.0 6.6E-60 4.8E-64 411.1 17.0 191 45-236 7-210 (218)
2 d1rwta_ f.43.1.1 (A:) Chloroph 99.5 1.7E-14 1.3E-18 123.5 5.7 49 165-214 24-73 (218)
3 d1nlna_ d.3.1.7 (A:) Human ade 16.3 26 0.0019 27.6 1.6 9 172-180 68-76 (203)
4 d2i02a1 b.45.1.1 (A:5-147) Gen 10.4 37 0.0027 23.9 0.8 22 79-101 5-26 (143)
5 d2co8a1 g.39.1.3 (A:44-76) Ned 9.9 33 0.0024 19.3 0.2 9 63-71 10-18 (33)
6 d1bdsa_ g.9.1.1 (A:) BDs-I def 8.4 57 0.0041 18.8 0.9 20 51-70 10-29 (43)
7 d2rh3a1 a.43.1.10 (A:82-202) V 7.4 49 0.0035 23.5 0.3 9 68-76 88-96 (121)
8 d1sgva1 b.122.1.1 (A:236-292) 6.9 63 0.0046 20.2 0.7 9 86-94 11-19 (57)
9 d1z96a1 a.5.2.1 (A:295-332) UB 6.0 48 0.0035 18.7 -0.3 6 68-73 13-18 (38)
10 d2jeka1 a.255.1.1 (A:6-145) Hy 5.7 54 0.0039 24.3 -0.3 11 188-198 18-28 (140)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=100.00 E-value=6.6e-60 Score=411.11 Aligned_cols=191 Identities=41% Similarity=0.721 Sum_probs=152.8
Q ss_pred ccccCCC--CCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCcc-cccccc-
Q 025952 45 MSADWMP--GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWA- 120 (245)
Q Consensus 45 ~~~~~~p--~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~-~a~~~~- 120 (245)
.+++|+| ....|+||||++|||+|||||||++++++++||||+|||||||||||++|++++|+++..++. ....|.
T Consensus 7 ~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~~~~~~~ 86 (218)
T d1rwta_ 7 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 86 (218)
T ss_dssp TCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSHHH
T ss_pred CCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCCCccccc
Confidence 3577997 346899999999999999999999999999999999999999999999999999997654331 111111
Q ss_pred ----ccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCCCCCCCCCCCCCCCChHHHHHHhHH
Q 025952 121 ----AVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKFEEYKVK 191 (245)
Q Consensus 121 ----~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~fDPlg~~~~~~~~~~~k~k 191 (245)
..+.+...+...+. .+..+..++++++..++.+|..|..... ..+..|||++|||+++.+++++++++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~~~~k~k 166 (218)
T d1rwta_ 87 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 166 (218)
T ss_dssp HGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHHHHHHHH
T ss_pred ccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHHHHHHHH
Confidence 11222222333332 2334445666778889999988765432 23456788899999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccc
Q 025952 192 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 236 (245)
Q Consensus 192 ELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~ 236 (245)
||||||||||||+||++|| .+||++|++||.+|++||+|+||++
T Consensus 167 ElkNGRLAMlAi~G~~~qe-~vtG~gp~~nl~~h~~~P~~~n~~~ 210 (218)
T d1rwta_ 167 EIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWN 210 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCSCHHHHHHHHHHCTTTSSGGG
T ss_pred HHHHhHHHHHHHHHHHHhh-hhcCCCHHHHHHHHhcCchhhhHHH
Confidence 9999999999999999999 8999999999999999999999985
No 2
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.46 E-value=1.7e-14 Score=123.53 Aligned_cols=49 Identities=27% Similarity=0.550 Sum_probs=45.0
Q ss_pred CCCCCCC-CCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhccccc
Q 025952 165 KKKYPGG-AFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYP 214 (245)
Q Consensus 165 ~~~~PGd-~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~t 214 (245)
++..||| +|||||+++|+++++++|+.||||||+||+|++|+++|| ..+
T Consensus 24 dGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E-~~~ 73 (218)
T d1rwta_ 24 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE-LLA 73 (218)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehh-hhc
Confidence 3467999 899999999999999999999999999999999999999 443
No 3
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=16.30 E-value=26 Score=27.62 Aligned_cols=9 Identities=56% Similarity=1.272 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 025952 172 AFDPLGFSK 180 (245)
Q Consensus 172 ~fDPlg~~~ 180 (245)
.||||||++
T Consensus 68 ~FDPfGfsd 76 (203)
T d1nlna_ 68 LFEPFGFSD 76 (203)
T ss_dssp EECTTCCCH
T ss_pred EECCCCCCH
Confidence 499999975
No 4
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}
Probab=10.40 E-value=37 Score=23.93 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=17.1
Q ss_pred hhHhHHHHHhhhhcchhhhhccc
Q 025952 79 ENLERYKESELIHCRWAMLAVPG 101 (245)
Q Consensus 79 ~~l~~~ReAELkHGRvAMLAvvG 101 (245)
+.++..+|- |+..|+||||+++
T Consensus 5 ~~~~~~~e~-l~~~~~~~laT~~ 26 (143)
T d2i02a1 5 QEIQKLHEL-IKNIDYGMFTTVD 26 (143)
T ss_dssp HHHHHHHHH-HTTCCEEEEEEEC
T ss_pred HHHHHHHHH-HhCCCEEEEEEEC
Confidence 456666654 8999999999987
No 5
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.94 E-value=33 Score=19.25 Aligned_cols=9 Identities=33% Similarity=0.756 Sum_probs=6.7
Q ss_pred CCCCCCccc
Q 025952 63 APGDFGFDP 71 (245)
Q Consensus 63 ~pgd~gFDP 71 (245)
-||+|+++|
T Consensus 10 ~pG~Y~qhp 18 (33)
T d2co8a1 10 WPGGYEQHP 18 (33)
T ss_dssp CTTSEECCT
T ss_pred ccCcccCCC
Confidence 467888877
No 6
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=8.38 E-value=57 Score=18.79 Aligned_cols=20 Identities=35% Similarity=0.801 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCCCcc
Q 025952 51 PGEPRPPYLDGSAPGDFGFD 70 (245)
Q Consensus 51 p~~~~P~~l~g~~pgd~gFD 70 (245)
||-.---.|.|+-||+||+.
T Consensus 10 pgrgdlwilrgtcpggygyt 29 (43)
T d1bdsa_ 10 PGRGDLWILRGTCPGGYGYT 29 (43)
T ss_dssp CSCCEEECSCSSCCTTTCCC
T ss_pred CCCCcEEEEecccCCCcccc
Confidence 34333456889999999863
No 7
>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.38 E-value=49 Score=23.45 Aligned_cols=9 Identities=56% Similarity=0.888 Sum_probs=7.4
Q ss_pred CcccCCCCC
Q 025952 68 GFDPLRLGE 76 (245)
Q Consensus 68 gFDPLGLa~ 76 (245)
-||||||-.
T Consensus 88 HFDPlglet 96 (121)
T d2rh3a1 88 HFDPLGLET 96 (121)
T ss_dssp HHSTTSCSC
T ss_pred cCCccchHH
Confidence 399999955
No 8
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.88 E-value=63 Score=20.15 Aligned_cols=9 Identities=22% Similarity=0.032 Sum_probs=7.3
Q ss_pred HHhhhhcch
Q 025952 86 ESELIHCRW 94 (245)
Q Consensus 86 eAELkHGRv 94 (245)
..||.|||+
T Consensus 11 a~~l~~Gr~ 19 (57)
T d1sgva1 11 ASAAANGRS 19 (57)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCc
Confidence 468999996
No 9
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=5.96 E-value=48 Score=18.68 Aligned_cols=6 Identities=83% Similarity=1.680 Sum_probs=3.9
Q ss_pred CcccCC
Q 025952 68 GFDPLR 73 (245)
Q Consensus 68 gFDPLG 73 (245)
|||||-
T Consensus 13 gfdple 18 (38)
T d1z96a1 13 GFDPLE 18 (38)
T ss_dssp TCCHHH
T ss_pred CCCHHH
Confidence 677764
No 10
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.71 E-value=54 Score=24.31 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=8.5
Q ss_pred HhHHHHhhhHH
Q 025952 188 YKVKEIKNGRL 198 (245)
Q Consensus 188 ~k~kELkNGRL 198 (245)
.-+.||++||=
T Consensus 18 ~al~EL~~G~K 28 (140)
T d2jeka1 18 SVVEELRAGRK 28 (140)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 34789999984
Done!