BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025953
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 60 IAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIK 103
+ +++ +DVR +Y HI ++ + PLF N+ N++GTI K
Sbjct: 13 LKLDKVIFVDVRTEGEYEEDHILNAINXPLFKNNEHNEVGTIYK 56
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPL 89
+ +LDVRD S YN HI + +P+
Sbjct: 21 FTILDVRDRSTYNDGHIMGAMAMPI 45
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPL 89
+ +LDVRD S YN HI + P+
Sbjct: 14 FTILDVRDRSTYNDGHIXGAXAXPI 38
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPL 89
+ +LDVRD S YN HI + P+
Sbjct: 23 FTILDVRDRSTYNDGHIXGAXAXPI 47
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPL 89
V+ +E + +A + +LDVR+ ++ H+ ++H+PL
Sbjct: 376 VSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL 414
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena
Sp. Northeast Structural Genomics Consortium Target
Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena
Sp. Northeast Structural Genomics Consortium Target
Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena
Sp. Northeast Structural Genomics Consortium Target
Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena
Sp. Northeast Structural Genomics Consortium Target
Nsr437h
Length = 141
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPL 89
+ +LDVRD S YN HI + P+
Sbjct: 18 FTILDVRDRSTYNDGHIXGAXAXPI 42
>pdb|2IFD|A Chain A, Crystal Structure Of A Remote Binding Site Mutant,
R492l, Of Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain In The Apo Form
pdb|1YS0|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Disulfide
Form
Length = 175
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfinic
Form
pdb|1YMD|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfonic
Form
pdb|1YML|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfenic
Form
Length = 175
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form
pdb|2UZQ|B Chain B, Protein Phosphatase, New Crystal Form
pdb|2UZQ|C Chain C, Protein Phosphatase, New Crystal Form
pdb|2UZQ|D Chain D, Protein Phosphatase, New Crystal Form
pdb|2UZQ|E Chain E, Protein Phosphatase, New Crystal Form
pdb|2UZQ|F Chain F, Protein Phosphatase, New Crystal Form
Length = 203
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 34 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 82
>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 67 VLDVRDNSQYNRAHIKSSYHVP 88
+LDVR+++++N H+ + HVP
Sbjct: 390 ILDVRNDNEWNNGHLSQAVHVP 411
>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury
Length = 178
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 24 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 72
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,856,281
Number of Sequences: 62578
Number of extensions: 245407
Number of successful extensions: 673
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 21
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)