Query 025953
Match_columns 245
No_of_seqs 238 out of 1178
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:26:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11784 tRNA 2-selenouridine 99.9 1.9E-22 4.1E-27 187.4 8.9 158 52-235 4-164 (345)
2 TIGR03167 tRNA_sel_U_synt tRNA 99.8 1.8E-21 4E-26 178.5 7.2 147 64-235 2-150 (311)
3 cd01518 RHOD_YceA Member of th 99.8 1.2E-20 2.6E-25 144.6 8.0 100 49-193 2-101 (101)
4 cd01520 RHOD_YbbB Member of th 99.8 1.1E-19 2.4E-24 145.8 5.3 122 51-192 1-125 (128)
5 cd01533 4RHOD_Repeat_2 Member 99.8 2.5E-19 5.5E-24 139.2 6.9 99 45-192 6-106 (109)
6 KOG1530 Rhodanese-related sulf 99.8 7.3E-19 1.6E-23 141.3 9.1 110 46-194 20-130 (136)
7 cd01534 4RHOD_Repeat_3 Member 99.8 4.8E-19 1E-23 134.5 6.4 93 51-193 1-95 (95)
8 cd01523 RHOD_Lact_B Member of 99.8 1.4E-18 3.1E-23 132.7 8.7 97 51-191 1-98 (100)
9 cd01519 RHOD_HSP67B2 Member of 99.8 1.6E-18 3.4E-23 133.1 8.9 102 52-192 2-105 (106)
10 cd01522 RHOD_1 Member of the R 99.8 2.5E-18 5.5E-23 136.0 10.0 89 51-164 1-91 (117)
11 cd01526 RHOD_ThiF Member of th 99.7 2.3E-18 5.1E-23 136.7 7.1 110 45-194 4-114 (122)
12 cd01525 RHOD_Kc Member of the 99.7 5E-18 1.1E-22 130.2 7.7 101 51-192 1-104 (105)
13 cd01528 RHOD_2 Member of the R 99.7 6.2E-18 1.3E-22 129.5 7.7 97 50-194 1-99 (101)
14 PF00581 Rhodanese: Rhodanese- 99.7 1.7E-17 3.7E-22 127.1 9.1 107 52-193 1-112 (113)
15 cd01449 TST_Repeat_2 Thiosulfa 99.7 1.5E-17 3.3E-22 130.1 8.3 104 51-192 1-117 (118)
16 cd01447 Polysulfide_ST Polysul 99.7 1.4E-17 2.9E-22 126.9 7.6 99 51-192 1-100 (103)
17 PLN02160 thiosulfate sulfurtra 99.7 2.3E-17 5E-22 134.4 9.4 108 47-194 13-122 (136)
18 PRK00162 glpE thiosulfate sulf 99.7 9.5E-18 2.1E-22 130.1 6.7 97 47-194 3-99 (108)
19 cd01527 RHOD_YgaP Member of th 99.7 1.7E-17 3.7E-22 126.4 7.6 93 49-193 2-94 (99)
20 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.2E-17 2.6E-22 133.3 6.4 105 49-192 2-120 (121)
21 cd01448 TST_Repeat_1 Thiosulfa 99.7 3.9E-17 8.5E-22 128.8 9.1 110 50-193 1-120 (122)
22 cd01444 GlpE_ST GlpE sulfurtra 99.7 1.8E-17 4E-22 124.8 6.5 92 50-192 1-95 (96)
23 cd01524 RHOD_Pyr_redox Member 99.7 2.1E-17 4.6E-22 124.2 6.2 88 51-191 1-88 (90)
24 cd01529 4RHOD_Repeats Member o 99.7 5.7E-17 1.2E-21 123.1 8.1 86 62-192 10-95 (96)
25 PRK01415 hypothetical protein; 99.7 5.8E-17 1.3E-21 144.4 8.1 103 47-194 110-212 (247)
26 cd01445 TST_Repeats Thiosulfat 99.7 9.8E-17 2.1E-21 131.0 8.8 108 51-192 1-137 (138)
27 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.8E-16 3.9E-21 132.8 9.7 109 46-194 33-158 (162)
28 PRK11493 sseA 3-mercaptopyruva 99.7 3.7E-16 8.1E-21 140.9 10.8 127 49-209 5-147 (281)
29 PRK09629 bifunctional thiosulf 99.7 3.5E-16 7.6E-21 155.0 10.7 127 49-209 9-141 (610)
30 cd01521 RHOD_PspE2 Member of t 99.7 2.3E-16 5E-21 123.0 6.9 95 49-194 8-106 (110)
31 cd01531 Acr2p Eukaryotic arsen 99.6 2.3E-16 5E-21 123.4 6.5 107 48-193 1-111 (113)
32 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 3.8E-16 8.1E-21 122.4 7.6 100 49-192 2-112 (113)
33 cd01532 4RHOD_Repeat_1 Member 99.6 1.9E-16 4.1E-21 119.9 5.3 85 59-192 5-91 (92)
34 smart00450 RHOD Rhodanese Homo 99.6 6.2E-16 1.3E-20 114.8 7.7 95 62-194 2-97 (100)
35 PRK05320 rhodanese superfamily 99.6 6.3E-16 1.4E-20 138.5 8.5 104 46-194 107-216 (257)
36 cd00158 RHOD Rhodanese Homolog 99.6 6.2E-16 1.3E-20 113.6 5.6 87 56-191 2-88 (89)
37 PLN02723 3-mercaptopyruvate su 99.6 2.9E-15 6.2E-20 137.9 11.0 112 49-194 22-145 (320)
38 PRK00142 putative rhodanese-re 99.6 1.3E-15 2.8E-20 140.1 8.6 103 47-194 110-212 (314)
39 PRK07411 hypothetical protein; 99.6 5E-15 1.1E-19 139.8 8.6 102 46-194 279-382 (390)
40 cd01535 4RHOD_Repeat_4 Member 99.6 3.2E-15 7E-20 123.1 6.1 88 56-194 2-90 (145)
41 COG0607 PspE Rhodanese-related 99.6 9E-15 2E-19 112.2 7.8 94 52-194 8-102 (110)
42 PLN02723 3-mercaptopyruvate su 99.6 5.6E-15 1.2E-19 136.0 7.8 108 50-194 191-310 (320)
43 PRK07878 molybdopterin biosynt 99.5 1.3E-14 2.8E-19 137.0 7.5 100 46-194 284-384 (392)
44 cd01446 DSP_MapKP N-terminal r 99.5 1.3E-14 2.8E-19 116.5 6.0 119 50-194 1-127 (132)
45 PRK08762 molybdopterin biosynt 99.5 1.2E-14 2.5E-19 136.5 6.5 96 48-194 2-98 (376)
46 TIGR02981 phageshock_pspE phag 99.5 7.6E-15 1.7E-19 114.1 4.3 68 63-163 17-84 (101)
47 COG2897 SseA Rhodanese-related 99.5 5.4E-14 1.2E-18 127.6 10.3 132 47-212 9-153 (285)
48 PRK09629 bifunctional thiosulf 99.5 4.2E-14 9E-19 140.3 9.3 109 49-194 147-264 (610)
49 COG2897 SseA Rhodanese-related 99.5 6.6E-14 1.4E-18 127.1 8.9 93 48-162 155-259 (285)
50 PRK11493 sseA 3-mercaptopyruva 99.5 4.6E-14 9.9E-19 127.4 7.3 106 50-193 154-271 (281)
51 PRK10287 thiosulfate:cyanide s 99.5 2E-14 4.4E-19 112.3 4.3 68 63-164 19-87 (104)
52 PRK05597 molybdopterin biosynt 99.5 7.3E-14 1.6E-18 130.4 7.2 96 46-192 258-353 (355)
53 PRK05600 thiamine biosynthesis 99.4 4.6E-13 1E-17 125.8 7.1 85 49-163 271-358 (370)
54 PRK01269 tRNA s(4)U8 sulfurtra 99.1 8.2E-11 1.8E-15 114.0 6.6 68 63-165 406-477 (482)
55 COG1054 Predicted sulfurtransf 99.1 1.3E-10 2.9E-15 105.3 6.1 119 17-164 70-199 (308)
56 KOG2017 Molybdopterin synthase 99.0 3E-10 6.4E-15 104.9 4.3 108 42-194 310-419 (427)
57 COG2603 Predicted ATPase [Gene 98.9 1.8E-10 4E-15 104.1 0.3 144 62-234 13-162 (334)
58 KOG3772 M-phase inducer phosph 98.8 2.5E-09 5.4E-14 98.2 4.6 110 46-194 153-276 (325)
59 KOG1529 Mercaptopyruvate sulfu 98.8 1.5E-08 3.3E-13 91.5 7.8 112 49-194 5-130 (286)
60 KOG1529 Mercaptopyruvate sulfu 98.3 9.2E-07 2E-11 80.0 5.1 80 61-161 169-260 (286)
61 COG5105 MIH1 Mitotic inducer, 98.1 4E-06 8.8E-11 77.1 4.4 134 46-236 239-384 (427)
62 PF04273 DUF442: Putative phos 97.0 0.0029 6.4E-08 49.9 7.0 82 49-158 13-107 (110)
63 TIGR01244 conserved hypothetic 96.9 0.0048 1.1E-07 50.0 7.9 83 48-158 12-107 (135)
64 PF13350 Y_phosphatase3: Tyros 93.4 0.16 3.6E-06 42.0 5.2 121 41-163 20-152 (164)
65 cd00127 DSPc Dual specificity 91.9 0.72 1.6E-05 36.2 6.9 77 62-160 26-107 (139)
66 COG3453 Uncharacterized protei 91.6 0.69 1.5E-05 37.4 6.3 86 47-161 12-111 (130)
67 PLN02727 NAD kinase 89.6 1.2 2.6E-05 46.9 7.7 76 46-149 264-353 (986)
68 smart00195 DSPc Dual specifici 89.4 1.8 4E-05 34.1 7.2 30 133-162 74-106 (138)
69 KOG1093 Predicted protein kina 88.6 0.38 8.3E-06 48.0 3.1 45 44-91 617-661 (725)
70 PRK00142 putative rhodanese-re 84.2 0.21 4.6E-06 46.2 -1.1 41 50-91 15-55 (314)
71 cd03243 ABC_MutS_homologs The 84.2 0.74 1.6E-05 39.2 2.3 36 199-234 16-51 (202)
72 TIGR00150 HI0065_YjeE ATPase, 81.9 1.1 2.4E-05 36.5 2.4 30 209-238 19-48 (133)
73 cd00009 AAA The AAA+ (ATPases 81.8 1 2.2E-05 34.2 2.1 26 211-236 18-43 (151)
74 PF13555 AAA_29: P-loop contai 81.0 1.2 2.6E-05 31.7 2.0 23 213-235 24-46 (62)
75 TIGR03167 tRNA_sel_U_synt tRNA 80.4 6.1 0.00013 36.6 7.0 36 47-82 134-172 (311)
76 cd03267 ABC_NatA_like Similar 78.6 1.3 2.8E-05 38.6 1.9 48 186-233 21-68 (236)
77 cd03281 ABC_MSH5_euk MutS5 hom 78.0 2.1 4.5E-05 37.1 3.0 39 200-238 15-55 (213)
78 PF00308 Bac_DnaA: Bacterial d 76.7 1.4 3.1E-05 38.3 1.6 23 215-237 37-59 (219)
79 PF13245 AAA_19: Part of AAA d 76.6 1.8 3.9E-05 31.6 1.8 21 212-232 10-30 (76)
80 PF03193 DUF258: Protein of un 76.4 1.6 3.4E-05 36.8 1.7 30 213-242 36-65 (161)
81 PRK08727 hypothetical protein; 76.3 1.9 4.1E-05 37.8 2.3 23 213-235 42-64 (233)
82 PRK12723 flagellar biosynthesi 76.1 2.1 4.7E-05 40.8 2.7 27 211-237 173-199 (388)
83 cd03280 ABC_MutS2 MutS2 homolo 75.2 2.9 6.3E-05 35.5 3.1 38 199-236 14-52 (200)
84 COG0802 Predicted ATPase or ki 74.4 2.5 5.3E-05 35.3 2.3 29 208-236 21-49 (149)
85 PRK09183 transposase/IS protei 74.3 4.1 8.8E-05 36.5 3.9 72 148-235 54-125 (259)
86 PRK05642 DNA replication initi 74.1 2.2 4.9E-05 37.4 2.2 23 213-235 46-68 (234)
87 COG1419 FlhF Flagellar GTP-bin 74.0 2.5 5.5E-05 40.6 2.6 31 212-242 203-233 (407)
88 TIGR03499 FlhF flagellar biosy 74.0 3.2 6.9E-05 37.6 3.2 27 210-236 192-218 (282)
89 PRK14722 flhF flagellar biosyn 73.7 2 4.3E-05 40.9 1.8 29 207-235 132-160 (374)
90 PRK15494 era GTPase Era; Provi 73.4 3.3 7.3E-05 38.5 3.2 21 214-234 54-74 (339)
91 PRK10646 ADP-binding protein; 71.7 3.1 6.7E-05 34.7 2.3 29 208-236 24-52 (153)
92 TIGR03015 pepcterm_ATPase puta 71.2 2.7 5.8E-05 36.8 2.0 23 212-234 43-65 (269)
93 PF02367 UPF0079: Uncharacteri 70.9 2.5 5.5E-05 34.0 1.6 29 208-236 11-39 (123)
94 PRK08903 DnaA regulatory inact 70.2 3.2 6.9E-05 35.7 2.2 24 213-236 43-66 (227)
95 PRK06893 DNA replication initi 70.2 2.9 6.2E-05 36.5 1.9 22 214-235 41-62 (229)
96 TIGR03420 DnaA_homol_Hda DnaA 70.0 3.6 7.8E-05 34.9 2.5 26 211-236 37-62 (226)
97 COG1136 SalX ABC-type antimicr 69.5 3 6.5E-05 37.0 1.9 30 204-233 23-52 (226)
98 PRK05703 flhF flagellar biosyn 69.2 4.1 9E-05 39.2 2.9 36 200-236 210-245 (424)
99 PRK08084 DNA replication initi 69.0 3.6 7.8E-05 36.1 2.3 22 214-235 47-68 (235)
100 PRK06620 hypothetical protein; 68.9 2.8 6.1E-05 36.4 1.6 23 213-235 45-67 (214)
101 COG4525 TauB ABC-type taurine 66.6 4 8.6E-05 36.3 2.0 28 206-233 25-52 (259)
102 COG1220 HslU ATP-dependent pro 66.0 3.3 7.1E-05 39.4 1.5 21 211-231 49-69 (444)
103 PTZ00361 26 proteosome regulat 65.3 4.5 9.7E-05 39.3 2.3 28 207-234 212-239 (438)
104 cd03285 ABC_MSH2_euk MutS2 hom 65.3 5.7 0.00012 34.6 2.8 52 185-238 3-56 (222)
105 PF00782 DSPc: Dual specificit 65.0 17 0.00037 28.1 5.3 31 132-162 68-101 (133)
106 PRK12727 flagellar biosynthesi 64.9 5 0.00011 40.2 2.6 36 198-234 337-372 (559)
107 cd01878 HflX HflX subfamily. 64.8 3.7 8E-05 34.4 1.5 22 214-235 43-64 (204)
108 TIGR00157 ribosome small subun 64.3 4.6 0.0001 35.8 2.1 30 213-242 121-150 (245)
109 cd02019 NK Nucleoside/nucleoti 63.8 4.9 0.00011 28.3 1.7 21 215-235 2-22 (69)
110 PRK13833 conjugal transfer pro 63.7 3.9 8.5E-05 38.1 1.5 24 212-235 144-167 (323)
111 PRK00411 cdc6 cell division co 63.7 4.4 9.6E-05 37.7 1.9 23 213-235 56-78 (394)
112 PRK06995 flhF flagellar biosyn 63.6 6.1 0.00013 39.0 2.9 32 210-241 254-285 (484)
113 PF05706 CDKN3: Cyclin-depende 63.4 45 0.00098 28.4 7.7 36 126-161 122-159 (168)
114 cd00820 PEPCK_HprK Phosphoenol 63.0 4.7 0.0001 31.6 1.7 27 206-232 9-35 (107)
115 COG1162 Predicted GTPases [Gen 62.8 4.9 0.00011 37.3 1.9 32 213-244 165-196 (301)
116 KOG1717 Dual specificity phosp 62.3 4 8.6E-05 37.5 1.2 39 50-92 5-43 (343)
117 cd03216 ABC_Carb_Monos_I This 62.2 5 0.00011 32.9 1.8 29 205-233 19-47 (163)
118 KOG0726 26S proteasome regulat 62.0 5.1 0.00011 37.6 1.9 46 186-231 188-238 (440)
119 PRK03992 proteasome-activating 61.9 5.4 0.00012 37.8 2.2 28 208-235 161-188 (389)
120 PRK14721 flhF flagellar biosyn 61.6 7.1 0.00015 37.8 2.9 27 208-234 187-213 (420)
121 PRK12288 GTPase RsgA; Reviewed 61.6 4.2 9E-05 38.2 1.3 29 214-242 207-235 (347)
122 TIGR00635 ruvB Holliday juncti 61.3 5.3 0.00012 35.8 1.9 24 212-235 30-53 (305)
123 COG3842 PotA ABC-type spermidi 61.3 5.3 0.00011 37.8 1.9 32 204-235 23-54 (352)
124 cd03279 ABC_sbcCD SbcCD and ot 60.9 5.1 0.00011 34.3 1.7 23 211-233 27-49 (213)
125 TIGR00750 lao LAO/AO transport 60.7 5.7 0.00012 36.1 2.0 27 210-236 32-58 (300)
126 TIGR02881 spore_V_K stage V sp 59.9 5.2 0.00011 35.4 1.6 21 214-234 44-64 (261)
127 cd03266 ABC_NatA_sodium_export 59.8 5.9 0.00013 33.7 1.9 31 204-234 23-53 (218)
128 cd03247 ABCC_cytochrome_bd The 58.8 6.3 0.00014 32.6 1.8 31 205-235 21-51 (178)
129 PHA03132 thymidine kinase; Pro 58.7 7.8 0.00017 39.1 2.7 23 212-234 257-279 (580)
130 TIGR01420 pilT_fam pilus retra 58.5 5.3 0.00011 37.2 1.4 24 211-234 121-144 (343)
131 PRK09270 nucleoside triphospha 58.4 7.6 0.00017 33.7 2.3 25 211-235 32-56 (229)
132 cd03221 ABCF_EF-3 ABCF_EF-3 E 58.1 6.1 0.00013 31.8 1.6 30 206-235 20-49 (144)
133 PF12775 AAA_7: P-loop contain 58.0 5.8 0.00013 35.8 1.6 25 209-233 30-54 (272)
134 COG3839 MalK ABC-type sugar tr 57.9 6 0.00013 37.2 1.7 28 206-233 23-50 (338)
135 PRK00080 ruvB Holliday junctio 57.8 7.1 0.00015 35.8 2.1 24 212-235 51-74 (328)
136 PRK13540 cytochrome c biogenes 57.4 7.2 0.00016 32.9 2.0 31 203-233 18-48 (200)
137 PRK11124 artP arginine transpo 57.3 7 0.00015 33.9 1.9 29 206-234 22-50 (242)
138 TIGR01242 26Sp45 26S proteasom 57.3 7.6 0.00017 36.2 2.3 26 209-234 153-178 (364)
139 cd03258 ABC_MetN_methionine_tr 56.6 6.9 0.00015 33.7 1.7 31 205-235 24-54 (233)
140 TIGR02928 orc1/cdc6 family rep 56.6 7.6 0.00016 35.6 2.1 24 212-235 40-63 (365)
141 cd01857 HSR1_MMR1 HSR1/MMR1. 56.6 6.4 0.00014 31.3 1.5 20 214-233 85-104 (141)
142 COG1116 TauB ABC-type nitrate/ 56.5 7.4 0.00016 35.1 1.9 37 205-241 22-58 (248)
143 PRK10895 lipopolysaccharide AB 56.5 7.3 0.00016 33.8 1.9 29 206-234 23-51 (241)
144 PRK12361 hypothetical protein; 56.1 31 0.00067 34.1 6.4 17 210-226 242-258 (547)
145 PRK13851 type IV secretion sys 55.9 6.3 0.00014 37.0 1.4 25 209-233 159-183 (344)
146 PRK13900 type IV secretion sys 55.8 6.5 0.00014 36.7 1.5 24 210-233 158-181 (332)
147 cd03293 ABC_NrtD_SsuB_transpor 55.7 6.6 0.00014 33.5 1.5 30 206-235 24-53 (220)
148 KOG2543 Origin recognition com 55.7 6.9 0.00015 37.7 1.7 23 210-232 28-50 (438)
149 TIGR03873 F420-0_ABC_ATP propo 55.5 7 0.00015 34.3 1.6 30 206-235 21-50 (256)
150 PF00488 MutS_V: MutS domain V 55.3 9.4 0.0002 33.7 2.4 54 186-240 16-71 (235)
151 PRK07688 thiamine/molybdopteri 55.3 8.2 0.00018 36.1 2.1 39 46-85 274-318 (339)
152 PRK10247 putative ABC transpor 54.9 7.8 0.00017 33.4 1.8 28 207-234 28-55 (225)
153 COG2453 CDC14 Predicted protei 54.6 24 0.00052 29.7 4.7 38 126-163 94-134 (180)
154 PRK11231 fecE iron-dicitrate t 54.6 8.1 0.00017 33.9 1.9 28 206-233 22-49 (255)
155 cd03246 ABCC_Protease_Secretio 54.4 8.4 0.00018 31.7 1.9 29 205-233 21-49 (173)
156 PRK06921 hypothetical protein; 54.3 8.6 0.00019 34.6 2.0 24 211-234 116-139 (266)
157 PRK11629 lolD lipoprotein tran 54.3 8.2 0.00018 33.3 1.8 29 205-233 28-56 (233)
158 COG1122 CbiO ABC-type cobalt t 54.2 8.3 0.00018 34.3 1.9 28 206-233 24-51 (235)
159 TIGR02673 FtsE cell division A 53.7 8.1 0.00018 32.7 1.7 31 205-235 21-51 (214)
160 TIGR03689 pup_AAA proteasome A 53.5 8.4 0.00018 38.2 2.0 27 208-234 212-238 (512)
161 COG1222 RPT1 ATP-dependent 26S 53.5 8.8 0.00019 36.7 2.0 48 187-235 155-208 (406)
162 cd03255 ABC_MJ0796_Lo1CDE_FtsE 53.4 8.7 0.00019 32.6 1.8 28 206-233 24-51 (218)
163 cd01854 YjeQ_engC YjeQ/EngC. 53.3 8.7 0.00019 34.8 1.9 29 213-241 162-190 (287)
164 TIGR00554 panK_bact pantothena 53.3 9.1 0.0002 35.1 2.0 25 210-234 60-84 (290)
165 cd03253 ABCC_ATM1_transporter 53.3 8.3 0.00018 33.2 1.7 30 206-235 21-50 (236)
166 TIGR02211 LolD_lipo_ex lipopro 53.2 8.2 0.00018 32.9 1.7 30 206-235 25-54 (221)
167 PRK13894 conjugal transfer ATP 53.2 7.6 0.00016 36.0 1.5 25 210-234 146-170 (319)
168 PRK08939 primosomal protein Dn 53.2 8.2 0.00018 35.5 1.8 24 212-235 156-179 (306)
169 COG1120 FepC ABC-type cobalami 53.2 8.4 0.00018 34.9 1.8 35 207-241 23-57 (258)
170 PRK14247 phosphate ABC transpo 53.0 9.1 0.0002 33.3 1.9 30 206-235 23-52 (250)
171 PRK14239 phosphate transporter 53.0 8.9 0.00019 33.4 1.9 30 205-234 24-53 (252)
172 PHA03136 thymidine kinase; Pro 52.9 7.9 0.00017 37.0 1.6 23 212-234 36-58 (378)
173 COG4133 CcmA ABC-type transpor 52.9 8.9 0.00019 33.6 1.8 36 206-241 22-57 (209)
174 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 52.8 8.2 0.00018 33.3 1.6 32 206-237 42-73 (224)
175 PRK14273 phosphate ABC transpo 52.8 9.1 0.0002 33.5 1.9 30 204-233 25-54 (254)
176 TIGR02323 CP_lyasePhnK phospho 52.8 8.2 0.00018 33.7 1.6 31 205-235 22-52 (253)
177 cd03213 ABCG_EPDR ABCG transpo 52.8 9.5 0.00021 32.1 2.0 34 202-235 25-58 (194)
178 PRK12377 putative replication 52.8 8.5 0.00019 34.4 1.7 24 213-236 102-125 (248)
179 PRK13638 cbiO cobalt transport 52.7 8.1 0.00018 34.3 1.6 32 203-234 18-49 (271)
180 cd03257 ABC_NikE_OppD_transpor 52.7 9.3 0.0002 32.6 1.9 31 204-234 23-53 (228)
181 cd03225 ABC_cobalt_CbiO_domain 52.7 8.7 0.00019 32.4 1.7 29 206-234 21-49 (211)
182 cd03223 ABCD_peroxisomal_ALDP 52.6 9 0.0002 31.5 1.8 35 203-237 18-52 (166)
183 PRK13543 cytochrome c biogenes 52.5 8.6 0.00019 32.8 1.7 31 205-235 30-60 (214)
184 cd03230 ABC_DR_subfamily_A Thi 52.4 9.3 0.0002 31.5 1.8 30 205-234 19-48 (173)
185 PRK11264 putative amino-acid A 52.4 8.6 0.00019 33.4 1.7 29 205-233 22-50 (250)
186 cd03252 ABCC_Hemolysin The ABC 52.4 9.1 0.0002 33.0 1.8 28 206-233 22-49 (237)
187 cd03284 ABC_MutS1 MutS1 homolo 52.2 12 0.00027 32.4 2.6 34 201-234 18-52 (216)
188 TIGR00960 3a0501s02 Type II (G 52.2 9.4 0.0002 32.4 1.9 30 206-235 23-52 (216)
189 cd03292 ABC_FtsE_transporter F 52.1 9.3 0.0002 32.3 1.8 31 205-235 20-50 (214)
190 PRK10418 nikD nickel transport 52.1 9.4 0.0002 33.5 1.9 32 204-235 21-52 (254)
191 cd01855 YqeH YqeH. YqeH is an 52.0 8.2 0.00018 32.1 1.4 23 214-236 129-151 (190)
192 PRK00098 GTPase RsgA; Reviewed 52.0 7.8 0.00017 35.3 1.4 23 213-235 165-187 (298)
193 cd00267 ABC_ATPase ABC (ATP-bi 51.9 9.7 0.00021 30.7 1.8 26 207-232 20-45 (157)
194 TIGR03156 GTP_HflX GTP-binding 51.8 8 0.00017 36.3 1.5 22 214-235 191-212 (351)
195 PRK07952 DNA replication prote 51.8 9.1 0.0002 34.2 1.8 22 213-234 100-121 (244)
196 PRK14242 phosphate transporter 51.8 9.2 0.0002 33.4 1.8 28 206-233 26-53 (253)
197 PRK14251 phosphate ABC transpo 51.8 9.5 0.00021 33.2 1.9 28 206-233 24-51 (251)
198 cd03227 ABC_Class2 ABC-type Cl 51.8 13 0.00028 30.4 2.5 38 203-240 12-49 (162)
199 PRK13548 hmuV hemin importer A 51.6 8.8 0.00019 33.8 1.7 30 206-235 22-51 (258)
200 TIGR02315 ABC_phnC phosphonate 51.6 9.8 0.00021 32.9 1.9 29 206-234 22-50 (243)
201 TIGR00853 pts-lac PTS system, 51.6 21 0.00046 27.1 3.5 23 137-159 3-25 (95)
202 PF06309 Torsin: Torsin; Inte 51.6 10 0.00022 30.8 1.8 21 212-232 53-73 (127)
203 PRK14248 phosphate ABC transpo 51.6 9.5 0.00021 33.8 1.8 27 207-233 42-68 (268)
204 PRK14974 cell division protein 51.6 11 0.00023 35.4 2.2 24 212-235 140-163 (336)
205 PRK13632 cbiO cobalt transport 51.4 9.1 0.0002 34.0 1.7 36 206-241 29-64 (271)
206 PRK00149 dnaA chromosomal repl 51.3 8.9 0.00019 36.9 1.7 24 213-236 149-172 (450)
207 TIGR00362 DnaA chromosomal rep 51.3 9 0.00019 36.2 1.7 23 213-235 137-159 (405)
208 cd03232 ABC_PDR_domain2 The pl 51.2 9.6 0.00021 32.0 1.7 28 206-233 27-54 (192)
209 COG4962 CpaF Flp pilus assembl 51.1 8.4 0.00018 36.5 1.5 18 215-232 176-193 (355)
210 PRK13539 cytochrome c biogenes 51.1 9.5 0.00021 32.4 1.7 33 205-237 21-53 (207)
211 TIGR03411 urea_trans_UrtD urea 51.0 9.5 0.00021 33.0 1.7 33 202-234 18-50 (242)
212 cd03263 ABC_subfamily_A The AB 50.9 10 0.00022 32.2 1.9 30 206-235 22-51 (220)
213 PRK09087 hypothetical protein; 50.7 9.3 0.0002 33.5 1.6 21 213-233 45-65 (226)
214 PRK06835 DNA replication prote 50.6 9.5 0.00021 35.6 1.7 25 211-235 182-206 (329)
215 PRK06526 transposase; Provisio 50.5 10 0.00022 33.9 1.9 29 205-234 92-120 (254)
216 PRK14250 phosphate ABC transpo 50.5 9.6 0.00021 33.2 1.7 30 205-234 22-51 (241)
217 PRK14262 phosphate ABC transpo 50.4 10 0.00023 33.0 1.9 28 206-233 23-50 (250)
218 TIGR02324 CP_lyasePhnL phospho 50.3 11 0.00023 32.3 1.9 29 205-233 27-55 (224)
219 PLN02165 adenylate isopentenyl 50.1 13 0.00028 34.9 2.6 22 211-232 42-63 (334)
220 PRK10908 cell division protein 50.1 9.8 0.00021 32.5 1.7 30 205-234 21-50 (222)
221 PRK14237 phosphate transporter 50.1 10 0.00023 33.6 1.9 27 207-233 41-67 (267)
222 PRK14723 flhF flagellar biosyn 50.0 11 0.00024 39.2 2.3 28 209-236 182-209 (767)
223 cd03256 ABC_PhnC_transporter A 50.0 10 0.00022 32.7 1.7 29 206-234 21-49 (241)
224 TIGR00972 3a0107s01c2 phosphat 49.8 11 0.00023 32.8 1.9 29 206-234 21-49 (247)
225 PRK14255 phosphate ABC transpo 49.7 11 0.00024 32.9 1.9 31 203-233 22-52 (252)
226 PRK14261 phosphate ABC transpo 49.7 11 0.00023 33.0 1.9 28 206-233 26-53 (253)
227 PRK10463 hydrogenase nickel in 49.6 10 0.00022 35.0 1.7 26 210-235 102-127 (290)
228 PRK08181 transposase; Validate 49.4 9.4 0.0002 34.6 1.5 25 211-235 105-129 (269)
229 PRK14238 phosphate transporter 49.3 11 0.00023 33.6 1.9 27 208-234 46-72 (271)
230 cd03282 ABC_MSH4_euk MutS4 hom 49.3 16 0.00035 31.4 2.9 38 202-239 17-56 (204)
231 KOG3636 Uncharacterized conser 49.2 7.7 0.00017 38.1 0.9 43 48-90 306-352 (669)
232 TIGR03864 PQQ_ABC_ATP ABC tran 49.1 10 0.00022 32.7 1.7 30 206-235 21-50 (236)
233 PRK13538 cytochrome c biogenes 48.8 12 0.00025 31.7 1.9 32 204-235 19-50 (204)
234 PTZ00454 26S protease regulato 48.8 12 0.00027 35.7 2.3 27 208-234 175-201 (398)
235 CHL00195 ycf46 Ycf46; Provisio 48.8 13 0.00027 36.7 2.3 31 205-235 252-282 (489)
236 TIGR02782 TrbB_P P-type conjug 48.5 10 0.00022 34.8 1.5 24 211-234 131-154 (299)
237 PRK14245 phosphate ABC transpo 48.3 11 0.00025 32.8 1.8 29 205-233 22-50 (250)
238 TIGR02768 TraA_Ti Ti-type conj 48.1 10 0.00022 39.2 1.7 29 209-237 365-393 (744)
239 cd03254 ABCC_Glucan_exporter_l 48.1 11 0.00024 32.2 1.7 31 204-234 21-51 (229)
240 PRK11831 putative ABC transpor 48.1 11 0.00023 33.5 1.7 30 206-235 27-56 (269)
241 cd01849 YlqF_related_GTPase Yl 48.0 10 0.00023 30.5 1.4 23 213-235 101-123 (155)
242 PRK10575 iron-hydroxamate tran 48.0 11 0.00024 33.3 1.7 32 203-234 28-59 (265)
243 COG1101 PhnK ABC-type uncharac 48.0 11 0.00024 33.9 1.6 26 208-233 28-53 (263)
244 PF05496 RuvB_N: Holliday junc 47.9 13 0.00027 33.3 2.0 25 210-234 48-72 (233)
245 PRK12726 flagellar biosynthesi 47.9 14 0.00031 35.6 2.5 44 190-234 185-228 (407)
246 PF01695 IstB_IS21: IstB-like 47.7 12 0.00026 31.5 1.8 23 212-234 47-69 (178)
247 TIGR02524 dot_icm_DotB Dot/Icm 47.6 11 0.00024 35.6 1.7 22 211-232 133-154 (358)
248 PRK10584 putative ABC transpor 47.6 11 0.00025 32.2 1.7 30 205-234 29-58 (228)
249 PRK14256 phosphate ABC transpo 47.6 12 0.00026 32.6 1.9 28 206-233 24-51 (252)
250 cd03290 ABCC_SUR1_N The SUR do 47.5 12 0.00027 31.8 1.8 30 204-233 19-48 (218)
251 PRK14269 phosphate ABC transpo 47.5 12 0.00026 32.6 1.8 29 205-233 21-49 (246)
252 TIGR01243 CDC48 AAA family ATP 47.5 13 0.00028 38.2 2.3 28 207-234 207-234 (733)
253 PHA03133 thymidine kinase; Pro 47.4 12 0.00026 35.6 1.9 23 213-235 41-63 (368)
254 PRK11248 tauB taurine transpor 47.3 11 0.00025 33.2 1.7 30 206-235 21-50 (255)
255 PRK14235 phosphate transporter 47.3 12 0.00026 33.1 1.9 29 206-234 39-67 (267)
256 PRK14088 dnaA chromosomal repl 47.3 11 0.00024 36.4 1.7 22 214-235 132-153 (440)
257 cd03295 ABC_OpuCA_Osmoprotecti 47.2 12 0.00027 32.4 1.9 30 206-235 21-50 (242)
258 PRK14267 phosphate ABC transpo 47.2 13 0.00027 32.5 1.9 28 206-233 24-51 (253)
259 PRK14240 phosphate transporter 47.2 12 0.00027 32.5 1.9 31 204-234 21-51 (250)
260 PRK14274 phosphate ABC transpo 47.1 12 0.00027 32.8 1.8 29 205-233 31-59 (259)
261 cd01129 PulE-GspE PulE/GspE Th 47.0 12 0.00025 33.7 1.7 21 212-232 80-100 (264)
262 PRK09544 znuC high-affinity zi 46.7 12 0.00025 33.1 1.6 31 204-234 22-52 (251)
263 PRK10744 pstB phosphate transp 46.6 13 0.00028 32.8 1.9 28 206-233 33-60 (260)
264 PRK11614 livF leucine/isoleuci 46.6 12 0.00025 32.4 1.6 29 206-234 25-53 (237)
265 cd03287 ABC_MSH3_euk MutS3 hom 46.6 18 0.00039 31.7 2.8 38 202-239 19-58 (222)
266 CHL00181 cbbX CbbX; Provisiona 46.6 11 0.00024 34.3 1.5 20 215-234 62-81 (287)
267 cd03233 ABC_PDR_domain1 The pl 46.4 13 0.00028 31.5 1.8 31 205-235 26-56 (202)
268 PRK10253 iron-enterobactin tra 46.4 13 0.00029 32.8 2.0 29 206-234 27-55 (265)
269 PRK14243 phosphate transporter 46.3 13 0.00029 32.9 1.9 31 203-233 27-57 (264)
270 TIGR00959 ffh signal recogniti 46.2 20 0.00044 34.7 3.3 25 211-235 98-122 (428)
271 PRK11701 phnK phosphonate C-P 46.1 12 0.00026 32.8 1.6 30 205-234 25-54 (258)
272 PRK14271 phosphate ABC transpo 46.0 13 0.00028 33.3 1.9 28 206-233 41-68 (276)
273 cd03296 ABC_CysA_sulfate_impor 46.0 12 0.00027 32.3 1.7 31 205-235 21-51 (239)
274 PF00437 T2SE: Type II/IV secr 46.0 10 0.00022 33.5 1.1 21 212-232 127-147 (270)
275 TIGR02769 nickel_nikE nickel i 45.9 13 0.00027 33.0 1.7 32 204-235 29-60 (265)
276 PRK13633 cobalt transporter AT 45.8 13 0.00029 33.2 1.9 28 206-233 30-57 (280)
277 PRK09580 sufC cysteine desulfu 45.8 14 0.0003 32.1 1.9 31 204-234 19-49 (248)
278 PRK12337 2-phosphoglycerate ki 45.7 14 0.00029 36.5 2.0 25 211-235 254-278 (475)
279 cd01858 NGP_1 NGP-1. Autoanti 45.5 11 0.00024 30.3 1.2 24 214-237 104-127 (157)
280 PRK00771 signal recognition pa 45.5 14 0.0003 35.9 2.0 26 210-235 93-118 (437)
281 PRK14241 phosphate transporter 45.4 13 0.00029 32.5 1.8 29 206-234 24-52 (258)
282 PRK11247 ssuB aliphatic sulfon 45.4 13 0.00027 33.1 1.7 30 205-234 31-60 (257)
283 PRK13342 recombination factor 45.3 12 0.00026 35.5 1.6 21 214-234 38-58 (413)
284 PRK11300 livG leucine/isoleuci 45.3 14 0.0003 32.3 1.8 31 203-233 22-52 (255)
285 cd03250 ABCC_MRP_domain1 Domai 45.2 14 0.00031 31.0 1.9 29 205-233 24-52 (204)
286 PRK08116 hypothetical protein; 45.2 13 0.00029 33.4 1.8 21 214-234 116-136 (268)
287 cd03369 ABCC_NFT1 Domain 2 of 45.2 14 0.0003 31.2 1.8 31 203-233 25-55 (207)
288 TIGR02788 VirB11 P-type DNA tr 45.2 11 0.00025 34.4 1.4 24 209-232 141-164 (308)
289 TIGR00064 ftsY signal recognit 45.1 16 0.00034 33.0 2.2 25 211-235 71-95 (272)
290 PRK10619 histidine/lysine/argi 45.0 14 0.00031 32.3 1.9 32 203-234 22-53 (257)
291 cd03245 ABCC_bacteriocin_expor 44.9 14 0.00031 31.3 1.9 31 203-233 21-51 (220)
292 PRK12422 chromosomal replicati 44.9 17 0.00036 35.4 2.5 24 213-236 142-165 (445)
293 TIGR01241 FtsH_fam ATP-depende 44.8 14 0.00031 35.9 2.1 25 210-234 86-110 (495)
294 PRK14086 dnaA chromosomal repl 44.8 14 0.0003 37.6 1.9 25 213-237 315-339 (617)
295 cd03244 ABCC_MRP_domain2 Domai 44.7 15 0.00032 31.3 1.9 29 205-233 23-51 (221)
296 PRK11058 GTPase HflX; Provisio 44.6 12 0.00026 36.1 1.5 22 214-235 199-220 (426)
297 cd03228 ABCC_MRP_Like The MRP 44.6 15 0.00032 30.2 1.8 30 204-233 20-49 (171)
298 PRK11889 flhF flagellar biosyn 44.5 15 0.00032 35.7 2.1 25 211-235 240-264 (436)
299 TIGR00390 hslU ATP-dependent p 44.5 13 0.00027 36.3 1.6 22 212-233 47-68 (441)
300 PRK13643 cbiO cobalt transport 44.5 13 0.00028 33.5 1.6 30 206-235 26-55 (288)
301 PLN02200 adenylate kinase fami 44.3 17 0.00037 32.0 2.3 22 209-230 40-61 (234)
302 PRK13547 hmuV hemin importer A 44.3 15 0.00032 33.0 1.9 28 206-233 21-48 (272)
303 PRK14260 phosphate ABC transpo 44.2 15 0.00032 32.3 1.9 29 206-234 27-55 (259)
304 cd05565 PTS_IIB_lactose PTS_II 44.1 24 0.00053 27.2 2.8 21 139-159 2-22 (99)
305 cd03249 ABC_MTABC3_MDL1_MDL2 M 44.1 14 0.00031 31.8 1.7 32 204-235 21-52 (238)
306 cd03294 ABC_Pro_Gly_Bertaine T 44.1 14 0.00029 32.9 1.6 30 205-234 43-72 (269)
307 COG1125 OpuBA ABC-type proline 44.0 15 0.00032 33.9 1.8 29 206-234 21-49 (309)
308 PRK14252 phosphate ABC transpo 44.0 15 0.00032 32.5 1.8 29 205-233 35-63 (265)
309 PRK14244 phosphate ABC transpo 43.9 15 0.00032 32.1 1.8 31 204-234 23-53 (251)
310 COG0410 LivF ABC-type branched 43.9 15 0.00034 32.8 1.9 30 208-237 25-54 (237)
311 PF13481 AAA_25: AAA domain; P 43.8 13 0.00028 30.6 1.4 22 212-233 32-53 (193)
312 cd03251 ABCC_MsbA MsbA is an e 43.7 15 0.00032 31.6 1.8 33 202-234 18-50 (234)
313 cd03234 ABCG_White The White s 43.7 15 0.00032 31.5 1.8 31 205-235 26-56 (226)
314 KOG0744 AAA+-type ATPase [Post 43.7 13 0.00028 35.4 1.5 29 208-236 173-202 (423)
315 cd01853 Toc34_like Toc34-like 43.7 13 0.00028 33.2 1.5 21 214-234 33-53 (249)
316 CHL00131 ycf16 sulfate ABC tra 43.6 15 0.00033 31.9 1.9 28 206-233 27-54 (252)
317 PRK14272 phosphate ABC transpo 43.5 15 0.00033 31.9 1.9 30 205-234 23-52 (252)
318 PRK09493 glnQ glutamine ABC tr 43.5 16 0.00034 31.7 1.9 28 206-233 21-48 (240)
319 PRK10416 signal recognition pa 43.4 24 0.00051 32.7 3.2 28 210-237 112-139 (318)
320 PRK13639 cbiO cobalt transport 43.4 15 0.00032 32.8 1.8 29 206-234 22-50 (275)
321 KOG2383 Predicted ATPase [Gene 43.3 15 0.00032 35.8 1.8 21 209-229 111-131 (467)
322 PRK14087 dnaA chromosomal repl 43.1 14 0.00031 35.8 1.7 23 213-235 142-164 (450)
323 COG2884 FtsE Predicted ATPase 43.1 17 0.00038 32.0 2.1 36 207-242 23-58 (223)
324 PRK13645 cbiO cobalt transport 43.1 14 0.0003 33.2 1.6 31 204-234 29-59 (289)
325 PRK10536 hypothetical protein; 43.1 15 0.00032 33.5 1.7 22 211-232 73-94 (262)
326 PRK11607 potG putrescine trans 43.0 14 0.00029 35.1 1.5 31 206-236 39-69 (377)
327 PRK14266 phosphate ABC transpo 42.9 16 0.00034 31.8 1.8 28 206-233 23-50 (250)
328 TIGR01288 nodI ATP-binding ABC 42.8 14 0.00031 33.4 1.6 31 205-235 23-53 (303)
329 PRK14270 phosphate ABC transpo 42.7 16 0.00035 31.8 1.9 28 206-233 24-51 (251)
330 PRK13644 cbiO cobalt transport 42.5 15 0.00033 32.7 1.8 31 204-234 20-50 (274)
331 PRK09590 celB cellobiose phosp 42.4 30 0.00064 26.9 3.1 22 138-159 2-23 (104)
332 cd03248 ABCC_TAP TAP, the Tran 42.3 16 0.00035 31.2 1.8 33 202-234 30-62 (226)
333 PRK14249 phosphate ABC transpo 42.3 17 0.00036 31.7 1.9 32 204-235 22-53 (251)
334 PRK13650 cbiO cobalt transport 42.1 16 0.00035 32.7 1.8 29 205-233 26-54 (279)
335 PRK15112 antimicrobial peptide 42.0 16 0.00034 32.5 1.7 31 204-234 31-61 (267)
336 COG1474 CDC6 Cdc6-related prot 42.0 16 0.00035 34.6 1.9 19 214-232 44-62 (366)
337 PRK09984 phosphonate/organopho 42.0 17 0.00036 32.0 1.9 29 205-233 23-51 (262)
338 PRK13649 cbiO cobalt transport 41.9 15 0.00033 32.7 1.6 29 206-234 27-55 (280)
339 PRK11650 ugpC glycerol-3-phosp 41.7 16 0.00035 34.2 1.8 28 206-233 24-51 (356)
340 PRK09435 membrane ATPase/prote 41.6 18 0.0004 33.8 2.1 25 212-236 56-80 (332)
341 PRK15056 manganese/iron transp 41.4 16 0.00034 32.5 1.6 31 205-235 26-56 (272)
342 PRK00440 rfc replication facto 41.1 17 0.00036 32.5 1.7 20 215-234 41-60 (319)
343 PRK14253 phosphate ABC transpo 41.1 18 0.00039 31.5 1.9 31 203-233 20-50 (249)
344 PRK13546 teichoic acids export 41.1 16 0.00036 32.5 1.7 31 205-235 43-73 (264)
345 PHA02544 44 clamp loader, smal 41.1 19 0.00042 32.3 2.2 24 211-234 42-65 (316)
346 COG4178 ABC-type uncharacteriz 41.0 18 0.0004 36.6 2.2 36 200-235 407-442 (604)
347 PF02302 PTS_IIB: PTS system, 40.9 32 0.00069 24.9 3.0 21 139-159 1-22 (90)
348 TIGR01425 SRP54_euk signal rec 40.9 19 0.00042 34.9 2.3 26 211-236 99-124 (429)
349 PRK13646 cbiO cobalt transport 40.8 17 0.00037 32.6 1.8 29 206-234 27-55 (286)
350 PRK14268 phosphate ABC transpo 40.8 18 0.00038 31.8 1.9 27 207-233 33-59 (258)
351 PRK13652 cbiO cobalt transport 40.7 17 0.00038 32.4 1.8 30 204-233 22-51 (277)
352 TIGR02525 plasmid_TraJ plasmid 40.7 15 0.00034 34.8 1.5 20 213-232 150-169 (372)
353 PRK12724 flagellar biosynthesi 40.6 21 0.00046 34.7 2.5 24 212-235 223-246 (432)
354 PRK14246 phosphate ABC transpo 40.6 18 0.00039 31.9 1.9 29 205-233 29-57 (257)
355 TIGR01526 nadR_NMN_Atrans nico 40.6 18 0.00038 33.6 1.9 23 212-234 162-184 (325)
356 COG4778 PhnL ABC-type phosphon 40.6 18 0.0004 31.6 1.8 27 206-232 31-57 (235)
357 PRK04195 replication factor C 40.2 19 0.00042 35.0 2.2 22 212-233 39-60 (482)
358 TIGR03238 dnd_assoc_3 dnd syst 40.0 17 0.00036 36.1 1.7 25 207-231 27-51 (504)
359 cd01122 GP4d_helicase GP4d_hel 40.0 18 0.00038 31.8 1.7 22 211-232 29-50 (271)
360 PHA02244 ATPase-like protein 40.0 17 0.00038 34.8 1.7 22 214-235 121-142 (383)
361 cd03288 ABCC_SUR2 The SUR doma 39.6 19 0.00041 31.7 1.8 28 205-232 40-67 (257)
362 TIGR03522 GldA_ABC_ATP gliding 39.6 18 0.00039 32.8 1.7 29 205-233 21-49 (301)
363 PRK14265 phosphate ABC transpo 39.6 19 0.00042 32.1 1.9 27 207-233 41-67 (274)
364 COG1484 DnaC DNA replication p 39.5 22 0.00047 31.8 2.2 25 211-235 104-128 (254)
365 COG0593 DnaA ATPase involved i 39.3 18 0.0004 34.9 1.8 26 212-237 113-138 (408)
366 PRK12289 GTPase RsgA; Reviewed 39.1 16 0.00035 34.4 1.4 28 214-241 174-201 (352)
367 PRK10419 nikE nickel transport 39.0 19 0.0004 32.0 1.7 32 204-235 30-61 (268)
368 cd04178 Nucleostemin_like Nucl 39.0 17 0.00037 30.4 1.4 20 214-233 119-138 (172)
369 cd05564 PTS_IIB_chitobiose_lic 38.9 35 0.00076 25.8 3.0 21 139-159 1-21 (96)
370 cd01882 BMS1 Bms1. Bms1 is an 38.8 22 0.00047 30.9 2.1 24 209-232 36-59 (225)
371 PRK14961 DNA polymerase III su 38.8 22 0.00047 33.3 2.2 23 211-233 37-59 (363)
372 KOG0060 Long-chain acyl-CoA tr 38.7 24 0.00051 35.8 2.5 55 177-231 414-480 (659)
373 TIGR02880 cbbX_cfxQ probable R 38.6 17 0.00036 32.9 1.4 16 215-230 61-76 (284)
374 PRK11432 fbpC ferric transport 38.6 18 0.00039 33.9 1.6 30 206-235 26-55 (351)
375 PRK08099 bifunctional DNA-bind 38.4 20 0.00042 34.4 1.8 31 205-235 212-242 (399)
376 PRK13889 conjugal transfer rel 38.3 18 0.00038 38.9 1.6 28 208-235 358-385 (988)
377 cd03286 ABC_MSH6_euk MutS6 hom 38.3 30 0.00066 30.2 2.9 40 201-240 17-58 (218)
378 PRK14258 phosphate ABC transpo 38.2 21 0.00045 31.5 1.9 31 204-234 25-55 (261)
379 PLN03025 replication factor C 38.2 20 0.00042 32.8 1.8 21 215-235 37-57 (319)
380 PRK14263 phosphate ABC transpo 38.1 20 0.00044 31.7 1.8 28 205-232 27-54 (261)
381 PRK05291 trmE tRNA modificatio 37.9 18 0.00038 35.1 1.5 20 215-234 218-237 (449)
382 PRK11153 metN DL-methionine tr 37.9 18 0.0004 33.5 1.6 32 204-235 23-54 (343)
383 PRK13634 cbiO cobalt transport 37.7 20 0.00044 32.2 1.8 28 206-233 27-54 (290)
384 PRK13641 cbiO cobalt transport 37.7 20 0.00044 32.2 1.8 29 205-233 26-54 (287)
385 TIGR02533 type_II_gspE general 37.6 19 0.00041 35.4 1.7 20 213-232 243-262 (486)
386 cd03291 ABCC_CFTR1 The CFTR su 37.6 21 0.00046 32.3 1.9 30 204-233 55-84 (282)
387 PRK14236 phosphate transporter 37.6 21 0.00046 31.7 1.9 27 207-233 46-72 (272)
388 PRK09452 potA putrescine/sperm 37.5 20 0.00043 33.9 1.8 28 206-233 34-61 (375)
389 PRK11000 maltose/maltodextrin 37.5 21 0.00044 33.6 1.8 31 205-235 22-52 (369)
390 PRK05595 replicative DNA helic 37.4 20 0.00044 34.5 1.8 23 212-234 201-223 (444)
391 TIGR03597 GTPase_YqeH ribosome 37.1 18 0.0004 33.9 1.4 22 214-235 156-177 (360)
392 PRK14275 phosphate ABC transpo 37.0 22 0.00047 32.0 1.8 28 207-234 60-87 (286)
393 PRK13636 cbiO cobalt transport 36.7 20 0.00044 32.1 1.6 29 207-235 27-55 (283)
394 PRK13631 cbiO cobalt transport 36.7 20 0.00044 32.9 1.7 29 206-234 46-74 (320)
395 PRK15064 ABC transporter ATP-b 36.7 21 0.00046 34.9 1.9 31 204-234 19-49 (530)
396 TIGR03265 PhnT2 putative 2-ami 36.6 22 0.00047 33.3 1.8 30 205-234 23-52 (353)
397 PRK12402 replication factor C 36.6 21 0.00046 32.1 1.7 19 214-232 38-56 (337)
398 PRK11288 araG L-arabinose tran 36.4 20 0.00043 34.8 1.6 30 206-235 24-53 (501)
399 COG1121 ZnuC ABC-type Mn/Zn tr 36.4 23 0.00049 32.1 1.8 29 207-235 25-53 (254)
400 PRK06851 hypothetical protein; 36.3 21 0.00046 34.0 1.7 22 211-232 29-50 (367)
401 PF07879 PHB_acc_N: PHB/PHA ac 36.2 38 0.00083 24.3 2.6 33 44-76 13-46 (64)
402 PRK10867 signal recognition pa 36.2 33 0.00072 33.3 3.0 24 211-234 99-122 (433)
403 TIGR02982 heterocyst_DevA ABC 36.0 24 0.00051 30.1 1.8 28 205-232 24-51 (220)
404 PRK05973 replicative DNA helic 36.0 20 0.00043 32.0 1.4 21 211-231 63-83 (237)
405 TIGR03258 PhnT 2-aminoethylpho 35.9 23 0.0005 33.3 1.9 28 206-233 25-52 (362)
406 PRK13640 cbiO cobalt transport 35.8 23 0.0005 31.7 1.8 28 206-233 27-54 (282)
407 PRK05201 hslU ATP-dependent pr 35.8 21 0.00045 34.9 1.6 22 212-233 50-71 (443)
408 PRK09700 D-allose transporter 35.7 21 0.00046 34.7 1.7 30 205-234 282-311 (510)
409 PRK13651 cobalt transporter AT 35.6 23 0.0005 32.3 1.8 30 205-234 26-55 (305)
410 TIGR00450 mnmE_trmE_thdF tRNA 35.5 20 0.00043 34.7 1.4 19 215-233 206-224 (442)
411 COG3638 ABC-type phosphate/pho 35.5 25 0.00054 31.9 1.9 27 207-233 25-51 (258)
412 PRK13635 cbiO cobalt transport 35.3 22 0.00049 31.8 1.7 30 205-234 26-55 (279)
413 PLN02796 D-glycerate 3-kinase 35.3 27 0.00058 33.0 2.2 25 211-235 99-123 (347)
414 PRK14254 phosphate ABC transpo 35.3 24 0.00052 31.7 1.9 27 207-233 60-86 (285)
415 PRK14259 phosphate ABC transpo 35.3 24 0.00053 31.3 1.9 28 206-233 33-60 (269)
416 PHA02562 46 endonuclease subun 35.3 26 0.00056 34.3 2.2 24 212-235 27-50 (562)
417 TIGR00382 clpX endopeptidase C 35.2 22 0.00049 34.3 1.7 21 214-234 118-138 (413)
418 cd03289 ABCC_CFTR2 The CFTR su 35.2 25 0.00054 31.7 1.9 32 203-234 21-52 (275)
419 PRK13796 GTPase YqeH; Provisio 35.1 21 0.00045 33.6 1.4 21 214-234 162-182 (365)
420 cd01856 YlqF YlqF. Proteins o 35.0 22 0.00049 29.1 1.5 22 214-235 117-138 (171)
421 PRK13647 cbiO cobalt transport 34.9 25 0.00053 31.4 1.8 28 206-233 25-52 (274)
422 TIGR00376 DNA helicase, putati 34.9 20 0.00043 36.5 1.3 24 209-232 170-193 (637)
423 PRK10851 sulfate/thiosulfate t 34.8 24 0.00052 33.0 1.8 30 205-234 21-50 (353)
424 COG1131 CcmA ABC-type multidru 34.8 23 0.00049 32.2 1.6 38 204-241 23-60 (293)
425 PF12774 AAA_6: Hydrolytic ATP 34.7 26 0.00056 31.0 1.9 25 210-234 30-54 (231)
426 TIGR00991 3a0901s02IAP34 GTP-b 34.7 22 0.00047 33.2 1.5 19 214-232 40-58 (313)
427 TIGR03345 VI_ClpV1 type VI sec 34.6 25 0.00055 37.0 2.1 20 214-233 598-617 (852)
428 PRK13648 cbiO cobalt transport 34.3 26 0.00057 31.0 1.9 29 205-233 28-56 (269)
429 TIGR00665 DnaB replicative DNA 34.1 22 0.00048 33.8 1.5 22 212-233 195-216 (434)
430 TIGR03596 GTPase_YlqF ribosome 34.0 23 0.00049 31.8 1.5 19 215-233 121-139 (276)
431 COG0542 clpA ATP-binding subun 34.0 19 0.0004 37.7 1.0 16 217-232 526-541 (786)
432 PRK10070 glycine betaine trans 33.8 25 0.00055 33.6 1.8 29 206-234 48-76 (400)
433 PRK05342 clpX ATP-dependent pr 33.7 25 0.00053 33.9 1.7 22 213-234 109-130 (412)
434 PRK10762 D-ribose transporter 33.6 24 0.00051 34.3 1.6 31 205-235 23-53 (501)
435 COG1084 Predicted GTPase [Gene 33.5 23 0.00049 33.5 1.4 21 215-235 171-191 (346)
436 PRK11147 ABC transporter ATPas 33.5 26 0.00057 35.3 2.0 29 205-233 22-50 (635)
437 PRK10499 PTS system N,N'-diace 33.4 56 0.0012 25.3 3.4 22 138-159 4-25 (106)
438 PRK13549 xylose transporter AT 33.4 26 0.00057 34.1 1.9 29 205-233 281-309 (506)
439 PRK13642 cbiO cobalt transport 33.3 27 0.00059 31.1 1.8 32 202-233 23-54 (277)
440 PF01580 FtsK_SpoIIIE: FtsK/Sp 33.3 22 0.00049 29.8 1.3 19 214-232 40-58 (205)
441 TIGR02633 xylG D-xylose ABC tr 33.3 26 0.00056 34.0 1.8 30 205-234 20-49 (500)
442 PRK06851 hypothetical protein; 33.0 32 0.0007 32.7 2.3 25 212-236 214-238 (367)
443 KOG2805 tRNA (5-methylaminomet 32.9 39 0.00084 31.9 2.8 25 138-162 6-30 (377)
444 PTZ00242 protein tyrosine phos 32.9 2.9E+02 0.0062 22.9 8.6 27 135-161 96-124 (166)
445 PRK10246 exonuclease subunit S 32.8 28 0.00061 37.4 2.1 26 208-233 26-51 (1047)
446 TIGR02538 type_IV_pilB type IV 32.8 24 0.00052 35.3 1.5 22 213-234 317-338 (564)
447 PRK13537 nodulation ABC transp 32.7 26 0.00056 32.0 1.6 31 206-236 27-57 (306)
448 PRK10938 putative molybdenum t 32.6 26 0.00057 33.8 1.8 29 206-234 23-51 (490)
449 PRK11819 putative ABC transpor 32.5 25 0.00054 34.7 1.6 30 205-234 343-372 (556)
450 PRK14264 phosphate ABC transpo 32.5 29 0.00062 31.6 1.9 29 205-233 64-92 (305)
451 PRK11331 5-methylcytosine-spec 32.5 25 0.00054 34.5 1.5 22 211-232 193-214 (459)
452 PRK15093 antimicrobial peptide 32.4 29 0.00062 32.0 1.9 30 205-234 26-55 (330)
453 TIGR03600 phage_DnaB phage rep 32.3 25 0.00055 33.4 1.5 22 212-233 194-215 (421)
454 PRK05439 pantothenate kinase; 32.3 35 0.00075 31.7 2.4 26 211-236 85-110 (311)
455 PLN03046 D-glycerate 3-kinase; 32.2 32 0.0007 33.7 2.2 25 211-235 211-235 (460)
456 PRK01889 GTPase RsgA; Reviewed 32.2 24 0.00052 33.1 1.3 31 212-242 195-225 (356)
457 PRK14712 conjugal transfer nic 32.2 30 0.00066 39.0 2.3 24 212-235 852-875 (1623)
458 PF03853 YjeF_N: YjeF-related 32.1 62 0.0013 26.9 3.7 32 135-166 23-57 (169)
459 PRK13764 ATPase; Provisional 32.0 25 0.00054 35.7 1.5 22 212-233 257-278 (602)
460 PRK09700 D-allose transporter 32.0 26 0.00057 34.0 1.6 32 204-235 23-54 (510)
461 PRK14257 phosphate ABC transpo 31.8 29 0.00064 32.1 1.8 28 206-233 102-129 (329)
462 PTZ00393 protein tyrosine phos 31.8 84 0.0018 28.3 4.6 37 126-162 159-197 (241)
463 PRK09563 rbgA GTPase YlqF; Rev 31.7 26 0.00056 31.6 1.5 19 215-233 124-142 (287)
464 TIGR03719 ABC_ABC_ChvD ATP-bin 31.7 27 0.00059 34.4 1.7 32 204-235 23-54 (552)
465 PRK11819 putative ABC transpor 31.6 28 0.0006 34.5 1.7 31 204-234 25-55 (556)
466 PRK10636 putative ABC transpor 31.4 28 0.0006 35.2 1.7 31 205-235 331-361 (638)
467 PRK10310 PTS system galactitol 31.4 72 0.0016 24.0 3.6 25 138-162 3-32 (94)
468 PF02879 PGM_PMM_II: Phosphogl 31.4 81 0.0018 23.5 4.0 27 137-163 21-47 (104)
469 KOG0736 Peroxisome assembly fa 31.4 34 0.00073 36.0 2.3 31 201-231 420-450 (953)
470 TIGR02633 xylG D-xylose ABC tr 31.3 29 0.00063 33.6 1.8 31 205-235 279-309 (500)
471 PRK10938 putative molybdenum t 31.2 30 0.00065 33.4 1.9 29 206-234 280-308 (490)
472 TIGR02858 spore_III_AA stage I 31.2 27 0.00059 31.6 1.5 21 213-233 112-132 (270)
473 KOG2373 Predicted mitochondria 31.0 18 0.0004 34.7 0.4 21 212-232 273-293 (514)
474 TIGR01663 PNK-3'Pase polynucle 31.0 37 0.00079 33.9 2.5 24 209-232 366-389 (526)
475 PRK09536 btuD corrinoid ABC tr 31.0 30 0.00065 33.1 1.8 29 206-234 23-51 (402)
476 cd05567 PTS_IIB_mannitol PTS_I 30.9 58 0.0013 23.8 3.0 20 139-158 2-22 (87)
477 PLN03073 ABC transporter F fam 30.9 28 0.00061 35.9 1.7 30 206-235 529-558 (718)
478 TIGR02759 TraD_Ftype type IV c 30.8 27 0.00059 35.0 1.6 24 211-234 175-198 (566)
479 PRK13549 xylose transporter AT 30.5 29 0.00064 33.7 1.7 30 205-234 24-53 (506)
480 smart00763 AAA_PrkA PrkA AAA d 30.3 33 0.00071 32.6 1.9 24 213-236 79-102 (361)
481 PRK05748 replicative DNA helic 30.2 30 0.00064 33.3 1.6 23 211-233 202-224 (448)
482 PRK10636 putative ABC transpor 30.1 32 0.00068 34.8 1.9 31 204-234 19-49 (638)
483 TIGR01650 PD_CobS cobaltochela 30.0 29 0.00063 32.5 1.5 21 214-234 66-86 (327)
484 PRK15134 microcin C ABC transp 30.0 32 0.0007 33.6 1.9 29 205-233 305-333 (529)
485 COG2256 MGS1 ATPase related to 29.9 27 0.00058 33.9 1.3 18 215-232 51-68 (436)
486 PRK13637 cbiO cobalt transport 29.9 33 0.00071 30.8 1.8 29 205-233 26-54 (287)
487 PRK15439 autoinducer 2 ABC tra 29.6 30 0.00065 33.7 1.6 29 206-234 31-59 (510)
488 PRK15439 autoinducer 2 ABC tra 29.3 33 0.00071 33.5 1.8 27 207-233 284-310 (510)
489 TIGR02729 Obg_CgtA Obg family 29.1 29 0.00064 32.2 1.4 29 207-235 152-180 (329)
490 PRK15064 ABC transporter ATP-b 29.1 34 0.00073 33.5 1.9 29 205-233 338-366 (530)
491 TIGR03819 heli_sec_ATPase heli 29.0 30 0.00066 32.3 1.4 23 210-232 176-198 (340)
492 TIGR02903 spore_lon_C ATP-depe 29.0 40 0.00086 34.2 2.3 25 212-236 175-199 (615)
493 TIGR01069 mutS2 MutS2 family p 29.0 39 0.00084 35.3 2.3 39 201-239 310-349 (771)
494 TIGR02314 ABC_MetN D-methionin 29.0 34 0.00075 31.9 1.8 29 206-234 25-53 (343)
495 COG0464 SpoVK ATPases of the A 28.9 37 0.0008 32.9 2.1 27 208-234 272-298 (494)
496 PRK08506 replicative DNA helic 28.8 32 0.0007 33.5 1.7 23 211-233 191-213 (472)
497 PRK10762 D-ribose transporter 28.8 32 0.00069 33.4 1.6 24 210-233 276-299 (501)
498 COG1198 PriA Primosomal protei 28.5 26 0.00057 36.3 1.0 33 211-244 216-248 (730)
499 CHL00176 ftsH cell division pr 28.5 39 0.00084 34.5 2.2 27 208-234 212-238 (638)
500 TIGR03719 ABC_ABC_ChvD ATP-bin 28.5 35 0.00077 33.6 1.9 29 205-233 341-369 (552)
No 1
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.87 E-value=1.9e-22 Score=187.40 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=111.1
Q ss_pred cHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC-hHHHHHh
Q 025953 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSV 130 (245)
Q Consensus 52 s~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~-~~f~~~l 130 (245)
+.+++.+++. ++.+|||||+|.||..||||||+|+|+.+..++..+++++|+..+. .++..|..+..++ ++.+.+.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~--~a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQF--AAIALGHALVAGNIAAHREEA 80 (345)
T ss_pred cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHH--HHHHhhhhhcchhHHHHHHHH
Confidence 4667777653 5689999999999999999999999997766555667777644332 2333444444433 3444443
Q ss_pred hhcCC-CCCeEEEEcC-CChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccccccccccccccccc
Q 025953 131 KSQFS-PESKLLVVCQ-EGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPRASREVVPVVPCELV 208 (245)
Q Consensus 131 ~~~l~-~d~~VVVyC~-~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
....+ ++++||+||. +|.||..++++|...|| ++..|+||+.+|.... .+.... .
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-----------------~v~~L~GG~~awr~~~-~~~~~~-----~ 137 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-----------------DVPRLEGGYKAYRRFV-IDTLEE-----A 137 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-----------------CcEEEcCCHHHHHHhh-HHHHhh-----h
Confidence 33344 7899999996 89999999999998865 2356888999995441 111110 1
Q ss_pred ccCCceEeecCCcccchhhHhhhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
....+|+.+.|.||+|||++|+.+++.
T Consensus 138 ~~~~~~ivl~G~TGsGKT~iL~~L~~~ 164 (345)
T PRK11784 138 PAQFPLVVLGGNTGSGKTELLQALANA 164 (345)
T ss_pred cccCceEecCCCCcccHHHHHHHHHhc
Confidence 134578889999999999999998753
No 2
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.84 E-value=1.8e-21 Score=178.54 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=110.3
Q ss_pred CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC-hHHHHHhhhcCCCCCeEEE
Q 025953 64 RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSVKSQFSPESKLLV 142 (245)
Q Consensus 64 ~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~-~~f~~~l~~~l~~d~~VVV 142 (245)
+.+|||||+|.||..||||||+|+|+.+.+++..++.++|+.... .++..|..+..++ +++++++....+++.+||+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~--~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPF--AAIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHH--HHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 458999999999999999999999998776665677788755442 3555666666656 6677777666676677999
Q ss_pred EcC-CChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccccccccccccccccccccCCceEeecCCc
Q 025953 143 VCQ-EGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPRASREVVPVVPCELVLKIPDFVDLNPCV 221 (245)
Q Consensus 143 yC~-~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (245)
||. +|.||..++++|..+|| ++..|+||+.+|..... +.... .....+|+.++|.|
T Consensus 80 yC~~gG~RS~~aa~~L~~~G~-----------------~v~~L~GG~~aw~~~~~-~~~~~-----~~~~~~~~vl~g~t 136 (311)
T TIGR03167 80 YCWRGGMRSGSLAWLLAQIGF-----------------RVPRLEGGYKAYRRFVI-DQLEE-----LPQPFPLIVLGGMT 136 (311)
T ss_pred EECCCChHHHHHHHHHHHcCC-----------------CEEEecChHHHHHHhhh-hhhhc-----cCCCCceeccCCCC
Confidence 996 89999999999998865 24568899999955511 11111 11344677799999
Q ss_pred ccchhhHhhhhhhh
Q 025953 222 TVGEIEFLKNCQHA 235 (245)
Q Consensus 222 ~~~~~~~~~~~~~~ 235 (245)
|+|||+++......
T Consensus 137 g~gKt~Ll~~L~~~ 150 (311)
T TIGR03167 137 GSGKTELLHALANA 150 (311)
T ss_pred CcCHHHHHHHHhcC
Confidence 99999999987654
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.83 E-value=1.2e-20 Score=144.63 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=79.3
Q ss_pred CcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHH
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~ 128 (245)
+.|+++|+.+++++++.+|||||++.||+.||||||+|+|+..+... ... +.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~--~~~--------------------------~~ 53 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF--PFW--------------------------LD 53 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHh--HHH--------------------------HH
Confidence 46899999999987788999999999999999999999998765321 001 01
Q ss_pred HhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccc
Q 025953 129 SVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 129 ~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
++. ..+++++|||||++|.||..+++.|.++| |+ ++..|+||+.+|++
T Consensus 54 ~~~-~~~~~~~ivvyC~~G~rs~~a~~~L~~~G-------~~---------~v~~l~GG~~~W~~ 101 (101)
T cd01518 54 ENL-DLLKGKKVLMYCTGGIRCEKASAYLKERG-------FK---------NVYQLKGGILKYLE 101 (101)
T ss_pred hhh-hhcCCCEEEEECCCchhHHHHHHHHHHhC-------Cc---------ceeeechhHHHHhC
Confidence 100 12568999999999999999999999874 45 56779999999963
No 4
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.78 E-value=1.1e-19 Score=145.81 Aligned_cols=122 Identities=17% Similarity=0.335 Sum_probs=80.3
Q ss_pred ccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC-hHHHHH
Q 025953 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQS 129 (245)
Q Consensus 51 Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~-~~f~~~ 129 (245)
||++|+.++++ ++.+|||||+++||..||||||+|||+...........+.+....+ -+...|..+..+. ++++++
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGRE--AAIELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHH--HHHHHHHHHHhhhHHHHHHH
Confidence 78999999987 5689999999999999999999999996543210000000000000 0000000011111 344444
Q ss_pred hh-hcCCCCCeEEEEcC-CChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 130 VK-SQFSPESKLLVVCQ-EGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 130 l~-~~l~~d~~VVVyC~-~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
+. ..++++++|||||+ +|.||.+++++|+.+|| ++..|+||+.+|.
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-----------------~v~~L~GG~~aw~ 125 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-----------------DVPLLEGGYKAYR 125 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-----------------ceeEeCCcHHHHH
Confidence 43 24788999999997 79999999999998865 2457889999994
No 5
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.78 E-value=2.5e-19 Score=139.24 Aligned_cols=99 Identities=23% Similarity=0.186 Sum_probs=78.0
Q ss_pred ccCCCcccHHHHHHHHhCC-CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC
Q 025953 45 RADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (245)
Q Consensus 45 ~~~~~~Is~eeL~~ll~~~-~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~ 123 (245)
....+.|+++++.++++++ +.+|||||++.||..||||||+|+|+..+... ...+
T Consensus 6 ~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~--~~~l---------------------- 61 (109)
T cd01533 6 VRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR--VGEL---------------------- 61 (109)
T ss_pred cccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH--HHhc----------------------
Confidence 3456789999999988765 57899999999999999999999998654320 0100
Q ss_pred hHHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccc-cccccccccccc
Q 025953 124 PEFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWN-CAYLCISIHHFL 192 (245)
Q Consensus 124 ~~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~-~~~l~~~~~~~~ 192 (245)
..+++++||+||++|.||..+++.|...|| + + +.+|+||+.+|.
T Consensus 62 ---------~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~-------~---------~~v~~l~gG~~~W~ 106 (109)
T cd01533 62 ---------APDPRTPIVVNCAGRTRSIIGAQSLINAGL-------P---------NPVAALRNGTQGWT 106 (109)
T ss_pred ---------CCCCCCeEEEECCCCchHHHHHHHHHHCCC-------C---------cceeEecCCHHHHH
Confidence 013478999999999999999999998855 3 3 567889999994
No 6
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=7.3e-19 Score=141.34 Aligned_cols=110 Identities=25% Similarity=0.464 Sum_probs=93.2
Q ss_pred cCCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChH
Q 025953 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~ 125 (245)
.....++.++++++++.++.++||||+|+||.+||+|.++|||+...... ...++++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~-----------------------~~l~~~e 76 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGA-----------------------GALKNPE 76 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccc-----------------------cccCCHH
Confidence 55678999999999998889999999999999999999999998654431 0234799
Q ss_pred HHHHhhhcCCC-CCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 126 FVQSVKSQFSP-ESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 126 f~~~l~~~l~~-d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
|+..+....++ |++||++|++|.||..|...|..+ ||+ ++....||+.+|.++
T Consensus 77 F~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~-------Gyk---------nv~ny~Gs~~~W~~k 130 (136)
T KOG1530|consen 77 FLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSA-------GYK---------NVGNYPGSYLAWVDK 130 (136)
T ss_pred HHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHc-------Ccc---------cccccCccHHHHHHc
Confidence 99999888764 679999999999999999999998 556 555567899999776
No 7
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.77 E-value=4.8e-19 Score=134.46 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=72.5
Q ss_pred ccHHHHHHHHhCC--CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHH
Q 025953 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (245)
Q Consensus 51 Is~eeL~~ll~~~--~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~ 128 (245)
|+++|+.++++++ +++|||||++.||+.||||||+|+|+..+... ...+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~--~~~~~-------------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQE--TDHFA-------------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHH--HHHhc--------------------------
Confidence 6899999988764 57899999999999999999999997654321 11100
Q ss_pred HhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccc
Q 025953 129 SVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 129 ~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
-.++++||+||.+|.||..++..|...||. +.+|+||+.+|++
T Consensus 53 -----~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-----------------v~~l~GG~~~W~~ 95 (95)
T cd01534 53 -----PVRGARIVLADDDGVRADMTASWLAQMGWE-----------------VYVLEGGLAAALA 95 (95)
T ss_pred -----ccCCCeEEEECCCCChHHHHHHHHHHcCCE-----------------EEEecCcHHHhcC
Confidence 013689999999999999999999988662 2457899999963
No 8
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.77 E-value=1.4e-18 Score=132.73 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=75.1
Q ss_pred ccHHHHHHHHhCC-CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHH
Q 025953 51 VNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (245)
Q Consensus 51 Is~eeL~~ll~~~-~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~ 129 (245)
|+++|+.++++++ +.+|||||++.||+.||||||+|+|+..+.... . +..++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~-----~----------------------~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF-----L----------------------EIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH-----H----------------------HhhHH
Confidence 6899999988764 689999999999999999999999987654310 0 00111
Q ss_pred hhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccc
Q 025953 130 VKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHF 191 (245)
Q Consensus 130 l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~ 191 (245)
....++++++||+||.+|.||..++..|.+.||. +.+|.||+.+|
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-----------------~~~l~GG~~~W 98 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYD-----------------VDYLAGGMKAW 98 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCce-----------------eEEeCCcHHhh
Confidence 2233567899999999999999999999998763 24577888888
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.77 E-value=1.6e-18 Score=133.07 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=79.2
Q ss_pred cHHHHHHHHh-CCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHh
Q 025953 52 NAEEAKNLIA-VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (245)
Q Consensus 52 s~eeL~~ll~-~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l 130 (245)
|++++.++++ +++.+|||+|++.||..||||||+|+|+..+.+.. ....++|.+.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-----------------------~~~~~~~~~~~ 58 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-----------------------ALSEEEFEKKY 58 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-----------------------CCCHHHHHHHh
Confidence 6789999887 66799999999999999999999999987653210 01123454444
Q ss_pred hhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 131 KSQ-FSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 131 ~~~-l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
... .+++++||+||.+|.||..+++.|..+| |+ ++..++||+.+|.
T Consensus 59 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G-------~~---------~v~~~~Gg~~~W~ 105 (106)
T cd01519 59 GFPKPSKDKELIFYCKAGVRSKAAAELARSLG-------YE---------NVGNYPGSWLDWA 105 (106)
T ss_pred cccCCCCCCeEEEECCCcHHHHHHHHHHHHcC-------Cc---------cceecCCcHHHHc
Confidence 433 4568999999999999999999999875 45 5667789999984
No 10
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.77 E-value=2.5e-18 Score=136.01 Aligned_cols=89 Identities=19% Similarity=0.343 Sum_probs=72.7
Q ss_pred ccHHHHHHHHhC-CCcEEEecCChhHHh-hcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHH
Q 025953 51 VNAEEAKNLIAV-ERYAVLDVRDNSQYN-RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (245)
Q Consensus 51 Is~eeL~~ll~~-~~~vLIDVR~~~Ey~-~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~ 128 (245)
||++|+.+++++ ++.++||||++.||+ .||||||+|+|+..+... .++++|..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~-------------------------~~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM-------------------------EINPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc-------------------------ccCHHHHH
Confidence 689999999987 478999999999999 999999999998765431 11234555
Q ss_pred HhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCc
Q 025953 129 SVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWK 164 (245)
Q Consensus 129 ~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~ 164 (245)
.+....+++++||+||++|.||..+++.|...||.+
T Consensus 56 ~l~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~ 91 (117)
T cd01522 56 ELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTN 91 (117)
T ss_pred HHHhhCCCCCeEEEEcCCCccHHHHHHHHHHCCCCe
Confidence 555555778999999999999999999999987643
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.75 E-value=2.3e-18 Score=136.75 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=83.5
Q ss_pred ccCCCcccHHHHHHHHhC-CCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC
Q 025953 45 RADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (245)
Q Consensus 45 ~~~~~~Is~eeL~~ll~~-~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~ 123 (245)
......|+++|+.+++++ .+.+|||||++.||+.||||||+|+|+..+... ...+.+
T Consensus 4 ~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~--~~~~~~-------------------- 61 (122)
T cd01526 4 LSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK--AAELKS-------------------- 61 (122)
T ss_pred CCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh--hhhhhh--------------------
Confidence 455678999999998876 578899999999999999999999998765431 111110
Q ss_pred hHHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 124 PEFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 124 ~~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
. ......++++++||+||++|.||..++..|...||. . ++.+|+||+.+|..+
T Consensus 62 --~-~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~------~---------~v~~l~GG~~~W~~~ 114 (122)
T cd01526 62 --L-QELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLE------R---------FVRDIIGGLKAWADK 114 (122)
T ss_pred --h-hhcccccCCCCcEEEECCCCCcHHHHHHHHHHcCCc------c---------ceeeecchHHHHHHH
Confidence 0 000011456899999999999999999999988541 3 678899999999655
No 12
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.74 E-value=5e-18 Score=130.25 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=75.3
Q ss_pred ccHHHHHHHHhCC--CcEEEecCChhHHhhcCCCCeEeeCCccccCCC-cchhhhhhhcccccCccccCCCCCCCChHHH
Q 025953 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDN-DLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (245)
Q Consensus 51 Is~eeL~~ll~~~--~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~-~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~ 127 (245)
||++|++++++++ +++|||||++.||..||||||+|+|+..+.... .... .+....+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~--------------------~~~~~~~ 60 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQ--------------------LPTVPRL 60 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccc--------------------ccchHHH
Confidence 6899999998764 678999999999999999999999987543210 0000 0011111
Q ss_pred HHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 128 QSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 128 ~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
. . .++++||+||.+|.+|..+++.|...| |. ++.+|+||+.+|.
T Consensus 61 ~---~--~~~~~vv~~c~~g~~s~~~a~~L~~~G-------~~---------~v~~l~GG~~a~~ 104 (105)
T cd01525 61 E---N--YKGKIIVIVSHSHKHAALFAAFLVKCG-------VP---------RVCILDGGINALK 104 (105)
T ss_pred H---h--hcCCeEEEEeCCCccHHHHHHHHHHcC-------CC---------CEEEEeCcHHHhc
Confidence 1 1 136899999999999999999999874 45 6778999999994
No 13
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.74 E-value=6.2e-18 Score=129.53 Aligned_cols=97 Identities=20% Similarity=0.329 Sum_probs=77.0
Q ss_pred cccHHHHHHHHhCC--CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHH
Q 025953 50 YVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (245)
Q Consensus 50 ~Is~eeL~~ll~~~--~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~ 127 (245)
.|+++|+.++++.+ +.++||||+++||..+|||||+|+|+..+.. +.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~-------------------------------~~ 49 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE-------------------------------RS 49 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH-------------------------------HH
Confidence 37899999998765 5789999999999999999999999754432 11
Q ss_pred HHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 128 QSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 128 ~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+.+.. .+++++||+||++|.||..++..|.+. ||. ++.+|+||+..|..+
T Consensus 50 ~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l~~~-------G~~---------~v~~l~GG~~~w~~~ 99 (101)
T cd01528 50 KELDS-DNPDKDIVVLCHHGGRSMQVAQWLLRQ-------GFE---------NVYNLQGGIDAWSLE 99 (101)
T ss_pred HHhcc-cCCCCeEEEEeCCCchHHHHHHHHHHc-------CCc---------cEEEecCCHHHHhhh
Confidence 11111 135789999999999999999999976 555 678999999999543
No 14
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.73 E-value=1.7e-17 Score=127.09 Aligned_cols=107 Identities=20% Similarity=0.337 Sum_probs=78.9
Q ss_pred cHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhh
Q 025953 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (245)
Q Consensus 52 s~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~ 131 (245)
||+|+++++.+++.+|||+|++.+|..||||||+|+|+..+......... ...+++.....
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSE-------------------DKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHH-------------------HHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccc-------------------ccccccccccc
Confidence 68999999977789999999999999999999999998665211000000 00122333333
Q ss_pred hcCCCCCeEEEEcCCChhHHHHHHH-----HHHcCCCceecccccCCCCcccccccccccccccccc
Q 025953 132 SQFSPESKLLVVCQEGLRYIRFCRF-----HRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 132 ~~l~~d~~VVVyC~~G~RS~~aa~~-----L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
..++++++||+||.+|.++..++.. |.+. ||+ ++.+|+||+.+|.+
T Consensus 62 ~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~-------g~~---------~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKL-------GFK---------NVYILDGGFEAWKA 112 (113)
T ss_dssp HGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHT-------TTS---------SEEEETTHHHHHHH
T ss_pred ccccccccceeeeecccccchhHHHHHHHHHHHc-------CCC---------CEEEecChHHHHhc
Confidence 4467889999999999998888777 7765 556 78999999999954
No 15
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.72 E-value=1.5e-17 Score=130.09 Aligned_cols=104 Identities=19% Similarity=0.280 Sum_probs=80.6
Q ss_pred ccHHHHHHHHhCCCcEEEecCChhHHhh-----------cCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 51 VNAEEAKNLIAVERYAVLDVRDNSQYNR-----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 51 Is~eeL~~ll~~~~~vLIDVR~~~Ey~~-----------GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
++++++.+++++++.+|||||++.||.. ||||||+|+|+..+.... .
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--~-------------------- 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--G-------------------- 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--C--------------------
Confidence 5789999988766789999999999987 999999999987654310 0
Q ss_pred CCCCh-HHHHHhhhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 120 TKQNP-EFVQSVKSQ-FSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 120 ~~~~~-~f~~~l~~~-l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
..+++ +|.+.+... ++++++||+||.+|.||.++++.|..+| |+ ++..++||+.+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G-------~~---------~v~~l~GG~~~W~ 117 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLG-------YK---------NVRLYDGSWSEWG 117 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcC-------CC---------CeeeeCChHHHhc
Confidence 12233 343444443 5688999999999999999999999875 45 5677889999984
No 16
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.72 E-value=1.4e-17 Score=126.88 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=75.7
Q ss_pred ccHHHHHHHHhCCCcEEEecCChhHH-hhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHH
Q 025953 51 VNAEEAKNLIAVERYAVLDVRDNSQY-NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (245)
Q Consensus 51 Is~eeL~~ll~~~~~vLIDVR~~~Ey-~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~ 129 (245)
|+++|+.+++++++.+|||+|++.+| ..||||||+|+|+..+......... +
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~------------------------~--- 53 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSP------------------------Y--- 53 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCcccc------------------------c---
Confidence 68899999987777899999999998 5799999999997654321000000 0
Q ss_pred hhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 130 VKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 130 l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
....++++++|||||.+|.||..+++.|... ||. ++.+|+||+.+|.
T Consensus 54 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~-------G~~---------~v~~l~Gg~~~w~ 100 (103)
T cd01447 54 HKPAFAEDKPFVFYCASGWRSALAGKTLQDM-------GLK---------PVYNIEGGFKDWK 100 (103)
T ss_pred cccCCCCCCeEEEEcCCCCcHHHHHHHHHHc-------ChH---------HhEeecCcHHHHh
Confidence 0012466899999999999999999999977 555 6778999999994
No 17
>PLN02160 thiosulfate sulfurtransferase
Probab=99.72 E-value=2.3e-17 Score=134.38 Aligned_cols=108 Identities=25% Similarity=0.411 Sum_probs=83.5
Q ss_pred CCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCe--EeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCCh
Q 025953 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSS--YHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGA--inIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~ 124 (245)
.+..|+++|+.++++++ .+|||||++.||..|||||| +|+|+..+... .. ..++
T Consensus 13 ~~~~i~~~e~~~~~~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~---~~--------------------l~~~ 68 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ---GR--------------------VKNQ 68 (136)
T ss_pred eeeEeCHHHHHHHHhCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcc---cc--------------------cCCH
Confidence 46789999999988654 68999999999999999999 89997543211 11 1124
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 125 EFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 125 ~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+|...+...++++++||+||++|.||..++..|.+.|| + ++..+.||+..|...
T Consensus 69 ~~~~~~~~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~-------~---------~v~~l~GG~~~W~~~ 122 (136)
T PLN02160 69 EFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAGY-------K---------KVRNKGGGYLAWVDH 122 (136)
T ss_pred HHHHHHHhccCCCCcEEEECCCcHHHHHHHHHHHHcCC-------C---------CeeecCCcHHHHhhC
Confidence 55555555567789999999999999999999998855 4 455678899999554
No 18
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.72 E-value=9.5e-18 Score=130.14 Aligned_cols=97 Identities=13% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHH
Q 025953 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f 126 (245)
+.+.|+++|+.+++++++.++||||++.||..||||||+|+|+..+.. +
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~-------------------------------~ 51 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA-------------------------------F 51 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH-------------------------------H
Confidence 567899999999987777899999999999999999999999743321 0
Q ss_pred HHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 127 VQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 127 ~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+ ..++++++|++||.+|.+|..++..|+..| |. ++.+|+||+.+|...
T Consensus 52 ~----~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G-------~~---------~v~~l~GG~~~w~~~ 99 (108)
T PRK00162 52 M----RQADFDTPVMVMCYHGNSSQGAAQYLLQQG-------FD---------VVYSIDGGFEAWRRT 99 (108)
T ss_pred H----HhcCCCCCEEEEeCCCCCHHHHHHHHHHCC-------ch---------heEEecCCHHHHHhc
Confidence 1 124558899999999999999999999874 45 567899999999654
No 19
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.72 E-value=1.7e-17 Score=126.37 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=76.4
Q ss_pred CcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHH
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~ 128 (245)
..|+++|+.++++++ .+|||+|+++||..||||||+|+|+..+... ..
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--~~----------------------------- 49 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--GL----------------------------- 49 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc--cc-----------------------------
Confidence 468999999988765 8999999999999999999999998765431 00
Q ss_pred HhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccc
Q 025953 129 SVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 129 ~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
.++++++||+||.+|.||..++..|.+.|+ . ++.+|.||+.+|..
T Consensus 50 ----~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~-------~---------~v~~l~gG~~~W~~ 94 (99)
T cd01527 50 ----PLVGANAIIFHCRSGMRTQQNAERLAAISA-------G---------EAYVLEGGLDAWKA 94 (99)
T ss_pred ----CCCCCCcEEEEeCCCchHHHHHHHHHHcCC-------c---------cEEEeeCCHHHHHH
Confidence 134578999999999999999999998855 3 45668899999954
No 20
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=1.2e-17 Score=133.25 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=78.4
Q ss_pred CcccHHHHHHHHhCC------CcEEEecCChhHHhhcCCCCeEeeCCc-cccCCCcchhhhhhhcccccCccccCCCCCC
Q 025953 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLF-IENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~------~~vLIDVR~~~Ey~~GHIPGAinIPl~-~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~ 121 (245)
..|+++|+.++++++ +++|||||++.||+.||||||+|+|+. .+... +.+
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~-----~~~------------------ 58 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEF-----FLD------------------ 58 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHH-----HHH------------------
Confidence 469999999998753 689999999999999999999999975 22210 000
Q ss_pred CChHHHHHh-hhcCCCCCeEEEEcC-CChhHHHHHHHHHHcCC--Cce---ecccccCCCCccccccccccccccccc
Q 025953 122 QNPEFVQSV-KSQFSPESKLLVVCQ-EGLRYIRFCRFHRAARC--WKS---WFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 122 ~~~~f~~~l-~~~l~~d~~VVVyC~-~G~RS~~aa~~L~~~G~--~~~---~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
.. ...++++++||+||. +|.||..+++.|...|- .+. ..||. ++.+|+||+.+|.
T Consensus 59 -------~~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~---------~v~~L~GG~~~f~ 120 (121)
T cd01530 59 -------KPGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYP---------EIYILEGGYKNFF 120 (121)
T ss_pred -------hhcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCC---------eEEEEcChhHhhc
Confidence 00 001456899999997 99999999999998631 010 02565 8899999999985
No 21
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.71 E-value=3.9e-17 Score=128.82 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=84.6
Q ss_pred cccHHHHHHHHhCCCcEEEecCCh-------hHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCC
Q 025953 50 YVNAEEAKNLIAVERYAVLDVRDN-------SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (245)
Q Consensus 50 ~Is~eeL~~ll~~~~~vLIDVR~~-------~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~ 122 (245)
.|+++++.+++.+++.+|||+|++ .+|..||||||+|+|+..+.... ... . . ..+
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~--~~~-------------~--~-~~~ 62 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDK--SPG-------------P--H-MLP 62 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccC--CCC-------------C--C-CCC
Confidence 378999999998777899999999 99999999999999987754321 000 0 0 222
Q ss_pred C-hHHHHHhhhc-CCCCCeEEEEcCC-ChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccc
Q 025953 123 N-PEFVQSVKSQ-FSPESKLLVVCQE-GLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 123 ~-~~f~~~l~~~-l~~d~~VVVyC~~-G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
+ ++|.+.+... ++++++||+||.+ |.+|..+++.|..+| |+ ++.+|+||+..|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G-------~~---------~v~~l~GG~~~W~~ 120 (122)
T cd01448 63 SPEEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFG-------HE---------NVRVLDGGLQAWKA 120 (122)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcC-------CC---------CEEEecCCHHHHHh
Confidence 3 4555555543 6789999999998 699999999999875 45 67788999999953
No 22
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.71 E-value=1.8e-17 Score=124.81 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=75.8
Q ss_pred cccHHHHHHHHhC-CCcEEEecCChhHHhh--cCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHH
Q 025953 50 YVNAEEAKNLIAV-ERYAVLDVRDNSQYNR--AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (245)
Q Consensus 50 ~Is~eeL~~ll~~-~~~vLIDVR~~~Ey~~--GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f 126 (245)
.|+++|+.+++++ .+.++||||++.||.. ||||||+|+|+..+...
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~------------------------------- 49 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW------------------------------- 49 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH-------------------------------
Confidence 3789999998876 4689999999999999 99999999998644220
Q ss_pred HHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 127 VQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 127 ~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
...++++++||+||.+|.+|..+++.|...| |. ++.+|+||+.+|.
T Consensus 50 ----~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G-------~~---------~v~~l~gG~~~w~ 95 (96)
T cd01444 50 ----LGDLDRDRPVVVYCYHGNSSAQLAQALREAG-------FT---------DVRSLAGGFEAWR 95 (96)
T ss_pred ----HhhcCCCCCEEEEeCCCChHHHHHHHHHHcC-------Cc---------eEEEcCCCHHHhc
Confidence 1124568999999999999999999999885 45 5678899999994
No 23
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.70 E-value=2.1e-17 Score=124.18 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=71.7
Q ss_pred ccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHh
Q 025953 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (245)
Q Consensus 51 Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l 130 (245)
++++|+.+++ .++.++||+|++++|..||||||+|+|+..+...
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----------------------------------- 44 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----------------------------------- 44 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH-----------------------------------
Confidence 5789999988 5567899999999999999999999997543220
Q ss_pred hhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccc
Q 025953 131 KSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHF 191 (245)
Q Consensus 131 ~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~ 191 (245)
...++++++||+||.+|.+|..+++.|+..|+ ++.+|+||+.+|
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~-----------------~v~~l~GG~~~w 88 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAARILTQNGF-----------------KVKNLDGGYKTY 88 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHHHHHHHCCC-----------------CEEEecCCHHHh
Confidence 01245578999999999999999999998865 246788898888
No 24
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.70 E-value=5.7e-17 Score=123.11 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCCCCCeEE
Q 025953 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLL 141 (245)
Q Consensus 62 ~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~~d~~VV 141 (245)
+++.+|||||++.||+.||||||+|+|+..+... .+.++. ....+++++||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~----------------------------~~~~~~-~~~~~~~~~iv 60 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR----------------------------SQELQA-LEAPGRATRYV 60 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC----------------------------HHHHHH-hhcCCCCCCEE
Confidence 4568999999999999999999999997544321 111111 11245689999
Q ss_pred EEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 142 VVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 142 VyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
+||.+|.+|..+++.|+.. ||+ ++.+|+||+.+|.
T Consensus 61 v~c~~g~~s~~~~~~l~~~-------G~~---------~v~~l~GG~~~W~ 95 (96)
T cd01529 61 LTCDGSLLARFAAQELLAL-------GGK---------PVALLDGGTSAWV 95 (96)
T ss_pred EEeCChHHHHHHHHHHHHc-------CCC---------CEEEeCCCHHHhc
Confidence 9999999999999999876 555 7788999999994
No 25
>PRK01415 hypothetical protein; Validated
Probab=99.69 E-value=5.8e-17 Score=144.39 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=82.1
Q ss_pred CCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHH
Q 025953 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f 126 (245)
..+.|+|+++.++++++++++||||++.||+.||||||+|+|+..+.+- +++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~----------------------------~~~ 161 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQF----------------------------PAW 161 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhh----------------------------HHH
Confidence 4678999999999998899999999999999999999999998665431 111
Q ss_pred HHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 127 VQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 127 ~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
++.. ..++++++|++||.+|.||..++..|.+.|| + ++.-|.||+.+|+..
T Consensus 162 ~~~~-~~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf-------~---------~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 162 VQQN-QELLKGKKIAMVCTGGIRCEKSTSLLKSIGY-------D---------EVYHLKGGILQYLED 212 (247)
T ss_pred Hhhh-hhhcCCCeEEEECCCChHHHHHHHHHHHcCC-------C---------cEEEechHHHHHHHh
Confidence 1110 1135689999999999999999999999865 4 556688888999655
No 26
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.69 E-value=9.8e-17 Score=131.01 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=82.7
Q ss_pred ccHHHHHHHHh----CCCcEEEecCCh--------hHHhh------------cCCCCeEeeCCccccCCCcchhhhhhhc
Q 025953 51 VNAEEAKNLIA----VERYAVLDVRDN--------SQYNR------------AHIKSSYHVPLFIENQDNDLGTIIKRTV 106 (245)
Q Consensus 51 Is~eeL~~ll~----~~~~vLIDVR~~--------~Ey~~------------GHIPGAinIPl~~l~~~~~~~~l~k~~~ 106 (245)
||++|+.++++ +++++|||+|+. ++|.. ||||||+|+|+..+... + ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~-~-~~------ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDE-A-GF------ 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCc-C-CC------
Confidence 68999999987 467899999987 89998 99999999997654321 0 00
Q ss_pred ccccCccccCCCCCCCCh-HHHHHhhhc-CCCCCeEEEEcCC---ChhHHHHHHHHHHcCCCceecccccCCCCcccccc
Q 025953 107 HNNFSGLFFGLPFTKQNP-EFVQSVKSQ-FSPESKLLVVCQE---GLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNC 181 (245)
Q Consensus 107 ~~~~~~l~~g~~~~~~~~-~f~~~l~~~-l~~d~~VVVyC~~---G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~ 181 (245)
.....|++ +|.+.+... ++++++||+||.+ |.+|.+++++|+.+ ||+ ++
T Consensus 73 ----------~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~-------G~~---------~v 126 (138)
T cd01445 73 ----------EESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLC-------GHP---------DV 126 (138)
T ss_pred ----------CCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHc-------CCC---------Ce
Confidence 01123343 555555544 7889999999985 88999999999965 667 88
Q ss_pred ccccccccccc
Q 025953 182 AYLCISIHHFL 192 (245)
Q Consensus 182 ~~l~~~~~~~~ 192 (245)
.+||||+.+|.
T Consensus 127 ~ildGG~~~W~ 137 (138)
T cd01445 127 AILDGGFFEWF 137 (138)
T ss_pred EEeCCCHHHhh
Confidence 99999999994
No 27
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.68 E-value=1.8e-16 Score=132.82 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=81.9
Q ss_pred cCCCcccHHHHHHHHhCCCcEEEecCChh----HHhhc---------CCCCeEeeCCccccCCCcchhhhhhhcccccCc
Q 025953 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNS----QYNRA---------HIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSG 112 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~~~vLIDVR~~~----Ey~~G---------HIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~ 112 (245)
.....|+++|+.+++++++.+|||||++. ||..| |||||+|+|+.....-
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l----------------- 95 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNL----------------- 95 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCC-----------------
Confidence 44688999999999988888999999876 46544 9999999996432210
Q ss_pred cccCCCCCCCC-hHHHHHhhhc--CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCceecccccCCCCccccccccccccc
Q 025953 113 LFFGLPFTKQN-PEFVQSVKSQ--FSPESKLLVVCQEGL-RYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISI 188 (245)
Q Consensus 113 l~~g~~~~~~~-~~f~~~l~~~--l~~d~~VVVyC~~G~-RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~ 188 (245)
..+. +.|.+.+.+. .++|++||+||.+|. +|..+++.|..+ ||+ ++..|+||+
T Consensus 96 -------~~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~-------G~~---------~V~~l~GG~ 152 (162)
T TIGR03865 96 -------APAWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAY-------GYS---------NVYWYPDGT 152 (162)
T ss_pred -------CCchhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhc-------CCc---------ceEEecCCH
Confidence 0011 2344455443 257899999999885 899999999987 556 788899999
Q ss_pred cccccc
Q 025953 189 HHFLPR 194 (245)
Q Consensus 189 ~~~~~~ 194 (245)
.+|...
T Consensus 153 ~aW~~a 158 (162)
T TIGR03865 153 DGWQAA 158 (162)
T ss_pred HHHHHc
Confidence 999544
No 28
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.66 E-value=3.7e-16 Score=140.93 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=92.6
Q ss_pred CcccHHHHHHHHhCCCcEEEecCC----------hhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCC
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRD----------NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~----------~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~ 118 (245)
..|+++++.+++++++++|||+|+ +.+|..||||||+|+|+..+..... ..+
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~------------------~~~ 66 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS------------------PLP 66 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC------------------CCC
Confidence 359999999999888899999996 7899999999999999865433110 011
Q ss_pred CCCCCh-HHHHHhhhc-CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc-
Q 025953 119 FTKQNP-EFVQSVKSQ-FSPESKLLVVCQEGL-RYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR- 194 (245)
Q Consensus 119 ~~~~~~-~f~~~l~~~-l~~d~~VVVyC~~G~-RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~- 194 (245)
...+.+ +|.+.+.+. ++++++||+||.+|. .+.++++.|... ||+ ++.+++||+.+|...
T Consensus 67 ~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~-------G~~---------~v~~l~GG~~~W~~~g 130 (281)
T PRK11493 67 HMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTF-------GVE---------KVSILAGGLAGWQRDD 130 (281)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHh-------cCC---------cEEEcCCCHHHHHHcC
Confidence 123343 444444444 688999999999765 577889999876 556 788999999999655
Q ss_pred --ccccccccccccccc
Q 025953 195 --ASREVVPVVPCELVL 209 (245)
Q Consensus 195 --~~~~~~~~~~~~~~~ 209 (245)
..+..+.+.++.|..
T Consensus 131 ~p~~~~~~~~~~~~~~~ 147 (281)
T PRK11493 131 LLLEEGAVELPEGEFNA 147 (281)
T ss_pred CCccCCCCCCCCCcccc
Confidence 445555555555554
No 29
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.66 E-value=3.5e-16 Score=155.01 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=95.1
Q ss_pred CcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC-hHHH
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFV 127 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~-~~f~ 127 (245)
..|+++||++++++++++|||||++.+|..||||||+|+|+........ . .+...|. ++|.
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~--~----------------~~~~lp~~~~l~ 70 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP--P----------------APGLLPDTADLE 70 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC--C----------------CCCCCCCHHHHH
Confidence 4599999999998888999999999999999999999999754322100 0 0112233 4555
Q ss_pred HHhhhc-CCCCCeEEEEcCCC-hhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc---cccccccc
Q 025953 128 QSVKSQ-FSPESKLLVVCQEG-LRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR---ASREVVPV 202 (245)
Q Consensus 128 ~~l~~~-l~~d~~VVVyC~~G-~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~ 202 (245)
+.+.+. ++++++|||||++| .+|.+++|+|+.+ ||+ ++.+||||+.+|... .+++++++
T Consensus 71 ~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~-------G~~---------~V~iLdGG~~aW~~ag~p~~~~~~~~ 134 (610)
T PRK09629 71 QLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVI-------GHS---------GYHYLDGGVLAWEAQALPLSTDVPPV 134 (610)
T ss_pred HHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHc-------CCC---------CEEEcCCCHHHHHHcCCccccCCCCC
Confidence 555554 67899999999965 6899999999976 556 788999999999776 45666555
Q ss_pred ccccccc
Q 025953 203 VPCELVL 209 (245)
Q Consensus 203 ~~~~~~~ 209 (245)
.+..|..
T Consensus 135 ~~~~~~~ 141 (610)
T PRK09629 135 AGGPVTL 141 (610)
T ss_pred CCcceee
Confidence 5555543
No 30
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.65 E-value=2.3e-16 Score=123.01 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=75.0
Q ss_pred CcccHHHHHHHHhCC--CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHH
Q 025953 49 NYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~--~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f 126 (245)
..|+++|+.+++..+ +.+|||||++.+|..||||||+|+|...+... .
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~-~----------------------------- 57 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN-A----------------------------- 57 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH-h-----------------------------
Confidence 569999999988753 58999999999999999999999997654310 0
Q ss_pred HHHhhhcCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 127 VQSVKSQFSPESKLLVVCQEG--LRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 127 ~~~l~~~l~~d~~VVVyC~~G--~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
...++++++||+||++| .+|..+++.|...|+ ++.+|+||+.+|...
T Consensus 58 ----~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-----------------~v~~l~GG~~~W~~~ 106 (110)
T cd01521 58 ----TAKLDKEKLFVVYCDGPGCNGATKAALKLAELGF-----------------PVKEMIGGLDWWKRE 106 (110)
T ss_pred ----hhcCCCCCeEEEEECCCCCchHHHHHHHHHHcCC-----------------eEEEecCCHHHHHHC
Confidence 01245689999999977 589999999998865 234689999999543
No 31
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.65 E-value=2.3e-16 Score=123.41 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCcccHHHHHHHHhC--CCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChH
Q 025953 48 VNYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (245)
Q Consensus 48 ~~~Is~eeL~~ll~~--~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~ 125 (245)
++.|+++|+.+++.. ++.+|||||++ ||..||||||+|+|+..+.. ....+.+
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~--~~~~~~~---------------------- 55 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKA--QLNQLVQ---------------------- 55 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhh--CHHHHHH----------------------
Confidence 467999999999876 35789999999 99999999999999876543 1222111
Q ss_pred HHHHhhhcCCCCCeEEEEcC-CChhHHHHHHHHHHc-CCCceecccccCCCCcccccccccccccccccc
Q 025953 126 FVQSVKSQFSPESKLLVVCQ-EGLRYIRFCRFHRAA-RCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 126 f~~~l~~~l~~d~~VVVyC~-~G~RS~~aa~~L~~~-G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
.. ..+++++||+||. +|.||..++..|.+. --.+.-.||. ++..|+||+.+|..
T Consensus 56 ---~~--~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~---------~v~~l~gG~~~w~~ 111 (113)
T cd01531 56 ---LL--SGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKF---------EVYVLHGGFNAWES 111 (113)
T ss_pred ---HH--hcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCC---------eEEEEcChHHHHHh
Confidence 00 0245789999998 789999998887531 0000001555 78899999999954
No 32
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.65 E-value=3.8e-16 Score=122.35 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHhCC------CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCC
Q 025953 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~------~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~ 122 (245)
+.|+++|++++++++ +.+|||||++ ||..||||||+|+|+..+.. ....+.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~--~~~~~~-------------------- 58 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQ--TLPQVY-------------------- 58 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHH--HHHHHH--------------------
Confidence 579999999999775 5789999999 99999999999999876432 111111
Q ss_pred ChHHHHHhhhcCCCCCeEEEEcCC-ChhHHHHHHHHHH----cCCCceecccccCCCCccccccccccccccccc
Q 025953 123 NPEFVQSVKSQFSPESKLLVVCQE-GLRYIRFCRFHRA----ARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 123 ~~~f~~~l~~~l~~d~~VVVyC~~-G~RS~~aa~~L~~----~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
+.+. ..+.++||+||.+ |.||..++..|.+ .|+ ||. ++..|+||+.+|.
T Consensus 59 -----~~~~--~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~-----~~~---------~v~~l~GG~~~w~ 112 (113)
T cd01443 59 -----ALFS--LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGE-----SLP---------KSYILTGGIKAWY 112 (113)
T ss_pred -----HHhh--hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCC-----CCC---------eEEEECChhhhhc
Confidence 1110 1235789999995 7899888866553 344 444 6678899999993
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.64 E-value=1.9e-16 Score=119.85 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=65.3
Q ss_pred HHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCCCCC
Q 025953 59 LIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPES 138 (245)
Q Consensus 59 ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~~d~ 138 (245)
++++++++|||||++.||..+|||||+|+|+..+... . . ....++++
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~-~-~-------------------------------~~~~~~~~ 51 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELD-A-W-------------------------------VRIPRRDT 51 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh-h-H-------------------------------hhCCCCCC
Confidence 4456778999999999999999999999997553210 0 0 00012478
Q ss_pred eEEEEcCCChh--HHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 139 KLLVVCQEGLR--YIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 139 ~VVVyC~~G~R--S~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
+||+||.+|.+ |..+++.|...| |+ ++.+|+||+.+|.
T Consensus 52 ~ivl~c~~G~~~~s~~aa~~L~~~G-------~~---------~v~~l~GG~~~W~ 91 (92)
T cd01532 52 PIVVYGEGGGEDLAPRAARRLSELG-------YT---------DVALLEGGLQGWR 91 (92)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHcC-------cc---------CEEEccCCHHHHc
Confidence 99999999887 689999999874 45 6678999999995
No 34
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.64 E-value=6.2e-16 Score=114.84 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhh-cCCCCCeE
Q 025953 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKS-QFSPESKL 140 (245)
Q Consensus 62 ~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~-~l~~d~~V 140 (245)
+++.+|||+|++.||..+|||||+|+|+..+....... ..+++.+.+.. ..+++++|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~i 59 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGEL----------------------DILEFEELLKRLGLDKDKPV 59 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCc----------------------CHHHHHHHHHHcCCCCCCeE
Confidence 35689999999999999999999999987654321100 00122222222 25678999
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 141 LVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 141 VVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
|+||.+|.+|..+++.|.+.| |+ ++.+|+||+.+|..+
T Consensus 60 v~~c~~g~~a~~~~~~l~~~G-------~~---------~v~~l~GG~~~w~~~ 97 (100)
T smart00450 60 VVYCRSGNRSAKAAWLLRELG-------FK---------NVYLLDGGYKEWSAA 97 (100)
T ss_pred EEEeCCCcHHHHHHHHHHHcC-------CC---------ceEEecCCHHHHHhc
Confidence 999999999999999999874 45 578999999999544
No 35
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.63 E-value=6.3e-16 Score=138.54 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=77.3
Q ss_pred cCCCcccHHHHHHHHhCC------CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 46 ADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~------~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
.....|+++|+.++++++ +.++||||++.||+.||||||+|+|+..+.+.
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~------------------------ 162 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEF------------------------ 162 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhh------------------------
Confidence 345789999999988652 47899999999999999999999998665431
Q ss_pred CCCChHHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 120 TKQNPEFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 120 ~~~~~~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+.++.+....+ ++++|++||.+|.||..++..|.+.||. ++..|.||+.+|..+
T Consensus 163 ----~~~l~~~~~~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~----------------~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 163 ----PEALAAHRADL-AGKTVVSFCTGGIRCEKAAIHMQEVGID----------------NVYQLEGGILKYFEE 216 (257)
T ss_pred ----HHHHHhhhhhc-CCCeEEEECCCCHHHHHHHHHHHHcCCc----------------ceEEeccCHHHHHHh
Confidence 11111111112 5889999999999999999999998764 344566666777543
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.62 E-value=6.2e-16 Score=113.58 Aligned_cols=87 Identities=24% Similarity=0.361 Sum_probs=69.8
Q ss_pred HHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCC
Q 025953 56 AKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFS 135 (245)
Q Consensus 56 L~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~ 135 (245)
+.++++.++.+|||+|++.||+.+|||||+|+|+..+.... .....+
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~---------------------------------~~~~~~ 48 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA---------------------------------ALLELD 48 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH---------------------------------HhhccC
Confidence 45556667899999999999999999999999986543310 001234
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccc
Q 025953 136 PESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHF 191 (245)
Q Consensus 136 ~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~ 191 (245)
++++||+||..|.+|..+++.|.+.| |. ++.+|+||+.+|
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G-------~~---------~v~~l~gG~~~w 88 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAG-------GT---------NVYNLEGGMLAW 88 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhC-------cc---------cEEEecCChhhc
Confidence 58999999999999999999999885 45 678899999998
No 37
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=2.9e-15 Score=137.86 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=84.9
Q ss_pred CcccHHHHHHHHhCCCcEEEecC--------C-hhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVR--------D-NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR--------~-~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
..|++++|.+++++++++|||+| + ..+|..||||||+|+|+..+.... . ..+.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~--~----------------~~~~ 83 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT--T----------------DLPH 83 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC--C----------------CcCC
Confidence 57999999999988789999996 3 378999999999999986554321 1 1112
Q ss_pred CCCC-hHHHHHhhhc-CCCCCeEEEEcCCC-hhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 120 TKQN-PEFVQSVKSQ-FSPESKLLVVCQEG-LRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 120 ~~~~-~~f~~~l~~~-l~~d~~VVVyC~~G-~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
..|. ++|.+.+.+. +.++++|||||.+| ..+.+++|+|+.+ ||. ++.+||||+.+|...
T Consensus 84 ~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~-------G~~---------~V~~LdGG~~~W~~~ 145 (320)
T PLN02723 84 MLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVF-------GHE---------KVWVLDGGLPKWRAS 145 (320)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHc-------CCC---------ceEEcCCCHHHHHHc
Confidence 3344 4455555554 67889999999966 5677899999977 556 788999999999765
No 38
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.61 E-value=1.3e-15 Score=140.07 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=78.4
Q ss_pred CCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHH
Q 025953 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f 126 (245)
....|+++|+.+++++++++|||||++.||+.||||||+|+|+..+.+. +. .
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~--~~--------------------------~ 161 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF--PP--------------------------W 161 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh--HH--------------------------H
Confidence 3467999999999988889999999999999999999999998765431 11 1
Q ss_pred HHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 127 VQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 127 ~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+.+.. ...++++||+||.+|.||..++..|.+.||. ++..|+||+.+|...
T Consensus 162 l~~~~-~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~----------------~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 162 VEENL-DPLKDKKVVMYCTGGIRCEKASAWMKHEGFK----------------EVYQLEGGIITYGED 212 (314)
T ss_pred HHHhc-CCCCcCeEEEECCCCcHHHHHHHHHHHcCCC----------------cEEEecchHHHHHHh
Confidence 10000 1236899999999999999999999988653 445566666666443
No 39
>PRK07411 hypothetical protein; Validated
Probab=99.57 E-value=5e-15 Score=139.84 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=79.2
Q ss_pred cCCCcccHHHHHHHHhCC--CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC
Q 025953 46 ADVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~--~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~ 123 (245)
...+.|+++|+.++++++ +.+|||||+++||+.||||||+|+|+.++......
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~------------------------- 333 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGV------------------------- 333 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccch-------------------------
Confidence 456789999999988754 47899999999999999999999998765431100
Q ss_pred hHHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 124 PEFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 124 ~~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+++ ..++++++||+||++|.||..+++.|+++|| + ++ .|+||+.+|...
T Consensus 334 ----~~l-~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~-------~---------~~-~l~GG~~~W~~~ 382 (390)
T PRK07411 334 ----EKV-KELLNGHRLIAHCKMGGRSAKALGILKEAGI-------E---------GT-NVKGGITAWSRE 382 (390)
T ss_pred ----HHH-hhcCCCCeEEEECCCCHHHHHHHHHHHHcCC-------C---------eE-EecchHHHHHHh
Confidence 011 1134588999999999999999999998865 3 22 378999999544
No 40
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.57 E-value=3.2e-15 Score=123.08 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=69.2
Q ss_pred HHHHHhCC-CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcC
Q 025953 56 AKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF 134 (245)
Q Consensus 56 L~~ll~~~-~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l 134 (245)
|.++++.+ +++|||||++.+|..||||||+|+|...+.. . ...+
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~----------------------------------~-l~~l 46 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ----------------------------------A-LEKL 46 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH----------------------------------H-HHhc
Confidence 44555444 5899999999999999999999997543321 1 1124
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 135 SPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 135 ~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+++.+|||||.+|.+|..+++.|... ||+ ++.+|+||+.+|...
T Consensus 47 ~~~~~vVv~c~~g~~a~~aa~~L~~~-------G~~---------~v~~L~GG~~aW~~~ 90 (145)
T cd01535 47 PAAERYVLTCGSSLLARFAAADLAAL-------TVK---------PVFVLEGGTAAWIAA 90 (145)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHc-------CCc---------CeEEecCcHHHHHHC
Confidence 45789999999999999999999977 455 788999999999766
No 41
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.56 E-value=9e-15 Score=112.15 Aligned_cols=94 Identities=24% Similarity=0.322 Sum_probs=71.6
Q ss_pred cHHHHHHHHhCCCcEEEecCChhHHhhcCCCC-eEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHh
Q 025953 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKS-SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (245)
Q Consensus 52 s~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPG-AinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l 130 (245)
...+...+...++.+|||||++.||+.+|||| ++|+|+..+........
T Consensus 8 ~~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~------------------------------ 57 (110)
T COG0607 8 SEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE------------------------------ 57 (110)
T ss_pred CHHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc------------------------------
Confidence 33334444445679999999999999999999 99999987754211000
Q ss_pred hhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 131 KSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 131 ~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
++++++|||||++|.||..++..|.++||... ..+.||+.+|...
T Consensus 58 ---~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~----------------~~l~gG~~~w~~~ 102 (110)
T COG0607 58 ---LPDDDPIVVYCASGVRSAAAAAALKLAGFTNV----------------YNLDGGIDAWKGA 102 (110)
T ss_pred ---cCCCCeEEEEeCCCCChHHHHHHHHHcCCccc----------------cccCCcHHHHHhc
Confidence 34589999999999999999999999986543 3467788888555
No 42
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.56 E-value=5.6e-15 Score=135.96 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=84.3
Q ss_pred cccHHHHHHHHhCCCcEEEecCChhHH-----------hhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCC
Q 025953 50 YVNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (245)
Q Consensus 50 ~Is~eeL~~ll~~~~~vLIDVR~~~Ey-----------~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~ 118 (245)
.++.+++.+.+++++.+|||+|++.|| ..||||||+|+|+..+... + .
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~-~-~------------------- 249 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDS-S-Q------------------- 249 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCC-C-C-------------------
Confidence 378999999887778899999999998 4699999999998665431 0 0
Q ss_pred CCCCChHHHHHhhhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 119 FTKQNPEFVQSVKSQ-FSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 119 ~~~~~~~f~~~l~~~-l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
..++.+++.+.+.+. ++++++||+||++|.||..+++.|+.+ ||+ ++..++||...|..+
T Consensus 250 ~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~-------G~~---------~v~~YdGs~~eW~~~ 310 (320)
T PLN02723 250 TLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRL-------GKT---------DVPVYDGSWTEWGAL 310 (320)
T ss_pred CCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHc-------CCC---------CeeEeCCCHHHHhcC
Confidence 122234555555443 778999999999999999999999976 556 678889999999554
No 43
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.53 E-value=1.3e-14 Score=137.01 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=80.8
Q ss_pred cCCCcccHHHHHHHHhCC-CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCCh
Q 025953 46 ADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~-~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~ 124 (245)
.....|+++|+.++++++ +.+|||||+++||+.+|||||+|+|+..+.... .
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~---~------------------------ 336 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE---A------------------------ 336 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh---H------------------------
Confidence 455789999999988754 578999999999999999999999986653210 0
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 125 EFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 125 ~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
...++++++||+||++|.||..+++.|.+.|| + ++.+|.||+.+|...
T Consensus 337 ------~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~-------~---------~V~~L~GG~~~W~~~ 384 (392)
T PRK07878 337 ------LAKLPQDRTIVLYCKTGVRSAEALAALKKAGF-------S---------DAVHLQGGVVAWAKQ 384 (392)
T ss_pred ------HhhCCCCCcEEEEcCCChHHHHHHHHHHHcCC-------C---------cEEEecCcHHHHHHh
Confidence 01245689999999999999999999998754 4 566889999999655
No 44
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.53 E-value=1.3e-14 Score=116.50 Aligned_cols=119 Identities=14% Similarity=0.020 Sum_probs=77.3
Q ss_pred cccHHHHHHHHhC--CCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHH
Q 025953 50 YVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (245)
Q Consensus 50 ~Is~eeL~~ll~~--~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~ 127 (245)
.|+++|+.++++. ++.+|||||++.+|..||||||+|+|+..+..........+ .. ...+.++..
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~ 67 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKIL----------LQ---QLLSCPEDR 67 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchh----------hh---hhcCCHHHH
Confidence 4899999999975 46899999999999999999999999875332100000000 00 011223333
Q ss_pred HHhhhcCCCCCeEEEEcCCChh------HHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 128 QSVKSQFSPESKLLVVCQEGLR------YIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 128 ~~l~~~l~~d~~VVVyC~~G~R------S~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+.+... ++++|||||.+|.+ +..+.+.++.++... .++. ++.+|+||+.+|.+.
T Consensus 68 ~~l~~~--~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~---------~v~~L~GG~~~w~~~ 127 (132)
T cd01446 68 DRLRRG--ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKL--QEGC---------SVYLLKGGFEQFSSE 127 (132)
T ss_pred HHHhcC--CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhc--CCCc---------eEEEEcchHHHHHhh
Confidence 333333 57899999997654 555666666554321 1333 789999999999554
No 45
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.52 E-value=1.2e-14 Score=136.46 Aligned_cols=96 Identities=13% Similarity=0.222 Sum_probs=77.1
Q ss_pred CCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHH
Q 025953 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (245)
Q Consensus 48 ~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~ 127 (245)
++.|+++|+.+++++ +.+|||||+++||..||||||+|+|+..+...
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------- 48 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELR-------------------------------- 48 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH--------------------------------
Confidence 567999999998865 48999999999999999999999997543320
Q ss_pred HHhhhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 128 QSVKSQ-FSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 128 ~~l~~~-l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+... .+++++||+||++|.||..+++.|+..|| + ++.+|+||+.+|...
T Consensus 49 --~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~-------~---------~v~~l~GG~~~W~~~ 98 (376)
T PRK08762 49 --IETHLPDRDREIVLICASGTRSAHAAATLRELGY-------T---------RVASVAGGFSAWKDA 98 (376)
T ss_pred --HhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCC-------C---------ceEeecCcHHHHHhc
Confidence 0011 24589999999999999999999998754 5 566788999999544
No 46
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.52 E-value=7.6e-15 Score=114.05 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=53.6
Q ss_pred CCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCCCCCeEEE
Q 025953 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLV 142 (245)
Q Consensus 63 ~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~~d~~VVV 142 (245)
....+||+|+++||..||||||+|+|+.++... ...+ ..+++++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~--l~~~-------------------------------~~~~~~~vvl 63 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEH--IATA-------------------------------VPDKNDTVKL 63 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHH--HHHh-------------------------------CCCCCCeEEE
Confidence 456899999999999999999999998654321 0000 0134789999
Q ss_pred EcCCChhHHHHHHHHHHcCCC
Q 025953 143 VCQEGLRYIRFCRFHRAARCW 163 (245)
Q Consensus 143 yC~~G~RS~~aa~~L~~~G~~ 163 (245)
||.+|.||..++..|.++||.
T Consensus 64 yC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 64 YCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred EeCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999998664
No 47
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.52 E-value=5.4e-14 Score=127.65 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=101.0
Q ss_pred CCCcccHHHHHHHHhCC-----CcEEEecCCh--hHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 47 DVNYVNAEEAKNLIAVE-----RYAVLDVRDN--SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~-----~~vLIDVR~~--~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
....|++++|.+.+.++ +..+++++.. .+|..+|||||+++++........ +.+.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~------------------~~~~ 70 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV------------------PLPH 70 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC------------------CCCC
Confidence 34569999999998755 5566666555 899999999999999877554311 1233
Q ss_pred CCCChH-HHHHhhhc-CCCCCeEEEEcC-CChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc--
Q 025953 120 TKQNPE-FVQSVKSQ-FSPESKLLVVCQ-EGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR-- 194 (245)
Q Consensus 120 ~~~~~~-f~~~l~~~-l~~d~~VVVyC~-~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~-- 194 (245)
+-|+++ |.+.+.++ +.+|++||+|.+ ++..|.+++|+|+ ++|++ ++.+||||+.+|...
T Consensus 71 ~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~-------~~Gh~---------~V~iLdGG~~~W~~~g~ 134 (285)
T COG2897 71 MLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLR-------YLGHE---------NVRILDGGLPAWKAAGL 134 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHH-------HcCCC---------ceEEecCCHHHHHHcCC
Confidence 556655 44455555 789999999998 6788999999999 45888 899999999999887
Q ss_pred -ccccccccccccccccCC
Q 025953 195 -ASREVVPVVPCELVLKIP 212 (245)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~ 212 (245)
.+++++++.+..|..+..
T Consensus 135 p~~~~~~~~~~~~f~~~~~ 153 (285)
T COG2897 135 PLETEPPEPPPTTFSAKYN 153 (285)
T ss_pred CccCCCCCCCCccccccCC
Confidence 677788888888766544
No 48
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.51 E-value=4.2e-14 Score=140.33 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=83.4
Q ss_pred CcccHHHHHHHHhCCCcEEEecCChhHHh--------hcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCC
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYN--------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~--------~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~ 120 (245)
..++.+++.+.+++++.+|||+|+++||. .||||||+|+|+..+.... .. .
T Consensus 147 ~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~--~~-------------------l 205 (610)
T PRK09629 147 PTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA--RN-------------------L 205 (610)
T ss_pred ccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC--CC-------------------C
Confidence 36899999999887788999999999995 6999999999986543210 00 1
Q ss_pred CCChHHHHHhhhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 121 KQNPEFVQSVKSQ-FSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 121 ~~~~~f~~~l~~~-l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
++.+++.+.+.+. ++++++||+||++|.||..++++|+.+ ||+ ++..++||...|...
T Consensus 206 k~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~l-------G~~---------~V~~YdGsw~eW~~~ 264 (610)
T PRK09629 206 RIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKAL-------GYP---------RVKAYAGSWGEWGNH 264 (610)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHc-------CCC---------CcEEeCCCHHHHhCC
Confidence 2223333334333 678999999999999999999999976 556 677888999999554
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6.6e-14 Score=127.11 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=76.4
Q ss_pred CCcccHHHHHHHHhCCCcEEEecCChhHHhh----------cCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCC
Q 025953 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNR----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (245)
Q Consensus 48 ~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~----------GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~ 117 (245)
...++.++.+..++.+..+|||+|+++||.. ||||||+|+|+..+.+. +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~---~~----------------- 214 (285)
T COG2897 155 KAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD---GG----------------- 214 (285)
T ss_pred cccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC---CC-----------------
Confidence 4457788888888888889999999999998 99999999999877652 11
Q ss_pred CCCCCChHHHHHhhhc--CCCCCeEEEEcCCChhHHHHHHHHHHcCC
Q 025953 118 PFTKQNPEFVQSVKSQ--FSPESKLLVVCQEGLRYIRFCRFHRAARC 162 (245)
Q Consensus 118 ~~~~~~~~f~~~l~~~--l~~d~~VVVyC~~G~RS~~aa~~L~~~G~ 162 (245)
..+.++.++.+.+. ++++++||+||.+|.||......|+.+|+
T Consensus 215 --~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~ 259 (285)
T COG2897 215 --LFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGG 259 (285)
T ss_pred --ccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCC
Confidence 23346666666633 88999999999999999999999998874
No 50
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.49 E-value=4.6e-14 Score=127.38 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=79.6
Q ss_pred cccHHHHHHHHhCCCcEEEecCChhHHh-----------hcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCC
Q 025953 50 YVNAEEAKNLIAVERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (245)
Q Consensus 50 ~Is~eeL~~ll~~~~~vLIDVR~~~Ey~-----------~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~ 118 (245)
.++.+++...+++++.+|||+|++.||. .||||||+|+|+..+.... .
T Consensus 154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~---~------------------ 212 (281)
T PRK11493 154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG---E------------------ 212 (281)
T ss_pred eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCC---C------------------
Confidence 4566777766666678999999999995 6999999999987654310 0
Q ss_pred CCCCChHHHHHhhhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccc
Q 025953 119 FTKQNPEFVQSVKSQ-FSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 119 ~~~~~~~f~~~l~~~-l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
.++.+++...+.+. ++++++||+||++|.||..++.+|+.+ ||+ ++..++||+..|..
T Consensus 213 -~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~-------G~~---------~v~~y~Gs~~eW~~ 271 (281)
T PRK11493 213 -LKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATL-------DVP---------NVKLYDGAWSEWGA 271 (281)
T ss_pred -cCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHc-------CCC---------CceeeCCCHHHHcc
Confidence 11123333333333 678899999999999999999999966 566 67888999999954
No 51
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.49 E-value=2e-14 Score=112.31 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhc-CCCCCeEE
Q 025953 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ-FSPESKLL 141 (245)
Q Consensus 63 ~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~-l~~d~~VV 141 (245)
.+-++||+|++.||+.+|||||+|+|+.++... +... .+++++||
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~----------------------------------l~~l~~~~~~~IV 64 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKER----------------------------------IATAVPDKNDTVK 64 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHHH----------------------------------HHhcCCCCCCeEE
Confidence 456799999999999999999999998644320 1111 23468899
Q ss_pred EEcCCChhHHHHHHHHHHcCCCc
Q 025953 142 VVCQEGLRYIRFCRFHRAARCWK 164 (245)
Q Consensus 142 VyC~~G~RS~~aa~~L~~~G~~~ 164 (245)
+||++|.||..++..|.+.||.+
T Consensus 65 lyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 65 LYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred EEeCCChHHHHHHHHHHHcCCCe
Confidence 99999999999999999887643
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.47 E-value=7.3e-14 Score=130.40 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=75.7
Q ss_pred cCCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChH
Q 025953 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~ 125 (245)
.....++++++.++. .+.+|||||+++||+.+|||||+|+|+..+.......
T Consensus 258 ~~~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~~-------------------------- 309 (355)
T PRK05597 258 GFGEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANPP-------------------------- 309 (355)
T ss_pred CcccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhccccc--------------------------
Confidence 345578899998653 4578999999999999999999999987654321000
Q ss_pred HHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccc
Q 025953 126 FVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFL 192 (245)
Q Consensus 126 f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~ 192 (245)
.++++++||+||++|.||..+++.|...|| . ++.+|.||+++|.
T Consensus 310 -------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~-------~---------nV~~L~GGi~~W~ 353 (355)
T PRK05597 310 -------SVSAGDEVVVYCAAGVRSAQAVAILERAGY-------T---------GMSSLDGGIEGWL 353 (355)
T ss_pred -------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC-------C---------CEEEecCcHHHHh
Confidence 134578999999999999999999998754 5 5678899999994
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.39 E-value=4.6e-13 Score=125.75 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=66.6
Q ss_pred CcccHHHHHHHHhCCCcEEEecCChhHHhhcCCC---CeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChH
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIK---SSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIP---GAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~ 125 (245)
..++++|+.+++++++.+|||||++.||+.|||| ||+|||+..+.+...
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~---------------------------- 322 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDAD---------------------------- 322 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchh----------------------------
Confidence 4789999999998777899999999999999998 599999877653100
Q ss_pred HHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCC
Q 025953 126 FVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCW 163 (245)
Q Consensus 126 f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~ 163 (245)
+.+.+ ..++++ +|||||++|.||..++..|++.||.
T Consensus 323 ~~~~l-~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~ 358 (370)
T PRK05600 323 ILHAL-SPIDGD-NVVVYCASGIRSADFIEKYSHLGHE 358 (370)
T ss_pred hhhhc-cccCCC-cEEEECCCChhHHHHHHHHHHcCCC
Confidence 00000 012334 8999999999999999999999874
No 54
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.12 E-value=8.2e-11 Score=114.00 Aligned_cols=68 Identities=12% Similarity=0.246 Sum_probs=56.8
Q ss_pred CCcEEEecCChhHHhhcCCCC----eEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCCCCC
Q 025953 63 ERYAVLDVRDNSQYNRAHIKS----SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPES 138 (245)
Q Consensus 63 ~~~vLIDVR~~~Ey~~GHIPG----AinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~~d~ 138 (245)
++.++||||+++||+.+|||| |+|+|+..+... . ..+++++
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~--~---------------------------------~~l~~~~ 450 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ--F---------------------------------GDLDQSK 450 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH--H---------------------------------hhcCCCC
Confidence 568999999999999999999 999998665421 0 1134578
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCce
Q 025953 139 KLLVVCQEGLRYIRFCRFHRAARCWKS 165 (245)
Q Consensus 139 ~VVVyC~~G~RS~~aa~~L~~~G~~~~ 165 (245)
+||+||.+|.||..++..|.++||.+.
T Consensus 451 ~iivyC~~G~rS~~aa~~L~~~G~~nv 477 (482)
T PRK01269 451 TYLLYCDRGVMSRLQALYLREQGFSNV 477 (482)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCccE
Confidence 999999999999999999999988654
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.09 E-value=1.3e-10 Score=105.32 Aligned_cols=119 Identities=10% Similarity=0.187 Sum_probs=88.7
Q ss_pred cccceEEeeecCCcccccc-hhhhhhhhhc----------cCCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeE
Q 025953 17 LRTTWLQFETHPGRKVSGK-SICRRNLKIR----------ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSY 85 (245)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~----------~~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAi 85 (245)
+...+++++......+... |+.++|++.. .....|+|+|..+++.++++++||.|+..||+.||..||+
T Consensus 70 f~~l~~K~s~~~~~pF~r~kVk~kkEIV~lg~~ddv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv 149 (308)
T COG1054 70 FADLRFKISEADEKPFWRLKVKLKKEIVALGVEDDVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAV 149 (308)
T ss_pred cccceeeeccccCCCcceEEEeehhhheecCCCCCcCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCcc
Confidence 5556666655444333333 6777777643 2356899999999999999999999999999999999999
Q ss_pred eeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCCc
Q 025953 86 HVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRYIRFCRFHRAARCWK 164 (245)
Q Consensus 86 nIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~ 164 (245)
+.+...+.+- |+++++..+.+ ++++|+.||.+|.|..++..+|...||..
T Consensus 150 ~p~~~tFref----------------------------P~~v~~~~~~~-~~KkVvmyCTGGIRCEKas~~m~~~GF~e 199 (308)
T COG1054 150 EPDIETFREF----------------------------PAWVEENLDLL-KDKKVVMYCTGGIRCEKASAWMKENGFKE 199 (308)
T ss_pred CCChhhhhhh----------------------------HHHHHHHHHhc-cCCcEEEEcCCceeehhhHHHHHHhcchh
Confidence 9987766541 33333333222 35699999999999999999999987743
No 56
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.99 E-value=3e-10 Score=104.95 Aligned_cols=108 Identities=18% Similarity=0.286 Sum_probs=80.5
Q ss_pred hhhccCCCcccHHHHHHHHhC-CCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCC
Q 025953 42 LKIRADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (245)
Q Consensus 42 ~~~~~~~~~Is~eeL~~ll~~-~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~ 120 (245)
++.......|+..|+++++++ ...++||||++.||+..|+|+|+|||+.++..... + +
T Consensus 310 l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~--~--~----------------- 368 (427)
T KOG2017|consen 310 LKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG--K--K----------------- 368 (427)
T ss_pred hhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh--h--h-----------------
Confidence 445566788999999999987 47899999999999999999999999988765311 0 0
Q ss_pred CCChHHHHHhhhcC-CCCCeEEEEcCCChhHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 121 KQNPEFVQSVKSQF-SPESKLLVVCQEGLRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 121 ~~~~~f~~~l~~~l-~~d~~VVVyC~~G~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
....+ ...++|+|+|+.|+.|.+|++.|++...... +-=+-||+++|..+
T Consensus 369 ---------~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~---------------vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 369 ---------LQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSS---------------VRDVIGGLKAWAAK 419 (427)
T ss_pred ---------hcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchh---------------hhhhhhHHHHHHHh
Confidence 00011 1257799999999999999999997654221 11123688999665
No 57
>COG2603 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=1.8e-10 Score=104.06 Aligned_cols=144 Identities=17% Similarity=0.313 Sum_probs=93.7
Q ss_pred CCCcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCC--hHHHHHhhhcCCCCCe
Q 025953 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN--PEFVQSVKSQFSPESK 139 (245)
Q Consensus 62 ~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~--~~f~~~l~~~l~~d~~ 139 (245)
-.+..|||||.|.||..||.|+++|+|..+.++...++..+|+..+. .++-.|.....-+ .+.+....+ .-.+.+
T Consensus 13 ~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~--~a~alg~~~vcG~i~~~~l~ask~-f~e~~~ 89 (334)
T COG2603 13 LADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQD--AAKALGHALVCGEIRQQRLEASKA-FQEENP 89 (334)
T ss_pred hcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcH--HHHHHHHHHHHhHHHHHHHHHHHH-HHHhCC
Confidence 45678999999999999999999999998766655666666643321 1222222222222 122222211 123456
Q ss_pred EEEEcC-CChhHHHHHHHH-HHcCC--CceecccccCCCCcccccccccccccccccccccccccccccccccccCCceE
Q 025953 140 LLVVCQ-EGLRYIRFCRFH-RAARC--WKSWFGYSSRQDFSCTWNCAYLCISIHHFLPRASREVVPVVPCELVLKIPDFV 215 (245)
Q Consensus 140 VVVyC~-~G~RS~~aa~~L-~~~G~--~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (245)
+-++|. +|.||...+.+| ...|+ -++-+||+..+-+ .+++.+.+ + -.|++
T Consensus 90 ~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r~iGGeKalrt~-----------~~~a~~~~--------------i-~~k~~ 143 (334)
T COG2603 90 VGILCARGGLRSKIVQKWLGYAAGIDYPRVIGGEKALRTF-----------AIQATIKE--------------I-AQKDF 143 (334)
T ss_pred cceeeccccchhHHHHHHHHHHHHhhhhhhhchHHHHHHH-----------HHHHHHHH--------------h-ccCCE
Confidence 777798 899999999999 66674 4667888854444 66666444 2 23556
Q ss_pred eecCCcccchhhHhhhhhh
Q 025953 216 DLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-||||+|||+.+.....
T Consensus 144 il~g~Tgcgkt~lve~lp~ 162 (334)
T COG2603 144 ILCGCTGCGKTELVEQLPN 162 (334)
T ss_pred EEeCCCCCcHHHHHHhCCC
Confidence 6667999999998765443
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.5e-09 Score=98.19 Aligned_cols=110 Identities=23% Similarity=0.261 Sum_probs=78.2
Q ss_pred cCCCcccHHHHHHHHhCC------CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 46 ADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~------~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
..++.||++.|+.++++. .++|||+|-|.||..|||+||+||+..+..+...... .+
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~--------------~~--- 215 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLK--------------DG--- 215 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccc--------------cc---
Confidence 457899999999999641 3569999999999999999999998765433100000 00
Q ss_pred CCCChHHHHHhhhcCCCCCeEEEEcC-CChhHHHHHHHHHHcC-------CCceecccccCCCCcccccccccccccccc
Q 025953 120 TKQNPEFVQSVKSQFSPESKLLVVCQ-EGLRYIRFCRFHRAAR-------CWKSWFGYSSRQDFSCTWNCAYLCISIHHF 191 (245)
Q Consensus 120 ~~~~~~f~~~l~~~l~~d~~VVVyC~-~G~RS~~aa~~L~~~G-------~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~ 191 (245)
.. ...+...+|+||. +-.|..++|..|+..- |-+ .-|. ...+|+||+..|
T Consensus 216 ~~-----------~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~--l~yp---------E~yiL~gGYk~f 273 (325)
T KOG3772|consen 216 VP-----------SGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPK--LSYP---------ELYILDGGYKEF 273 (325)
T ss_pred cc-----------cccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcc--cccc---------hheeecccHHHH
Confidence 00 0012357899999 8899999999999521 222 2444 678999999999
Q ss_pred ccc
Q 025953 192 LPR 194 (245)
Q Consensus 192 ~~~ 194 (245)
..+
T Consensus 274 f~~ 276 (325)
T KOG3772|consen 274 FSN 276 (325)
T ss_pred HHh
Confidence 777
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.79 E-value=1.5e-08 Score=91.46 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=84.9
Q ss_pred CcccHHHHHHHHhCCCcEEEecC---------ChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVR---------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR---------~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
..++++++.+++.+.++.|||.. ...||..-|||||.++.+........ .+ ++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~---~~---------------~~ 66 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS---PY---------------RH 66 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC---cc---------------cc
Confidence 35889999999888889999985 34578889999999998877654321 11 12
Q ss_pred CCCChH-HHHHhhhc-CCCCCeEEEEcC--CCh-hHHHHHHHHHHcCCCceecccccCCCCccccccccccccccccccc
Q 025953 120 TKQNPE-FVQSVKSQ-FSPESKLLVVCQ--EGL-RYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPR 194 (245)
Q Consensus 120 ~~~~~~-f~~~l~~~-l~~d~~VVVyC~--~G~-RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (245)
+-|.++ |.+-+..+ +++++.+|||.+ +|+ .|.+++|+++.. ||. +++.||||+.+|+..
T Consensus 67 ~lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~f-------Gh~---------~VslL~GG~~~Wk~~ 130 (286)
T KOG1529|consen 67 MLPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVF-------GHT---------KVSLLNGGFRAWKAA 130 (286)
T ss_pred cCccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHh-------Ccc---------EEEEecCcHHHHHHc
Confidence 334434 44444444 678999999999 775 688999999965 777 889999999999877
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.28 E-value=9.2e-07 Score=80.04 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=58.6
Q ss_pred hCCCcEEEecCChhHHh-----------hcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHH
Q 025953 61 AVERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (245)
Q Consensus 61 ~~~~~vLIDVR~~~Ey~-----------~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~ 129 (245)
..+++..||.|...+|. .||||||+|+|+..+... .. +.++.++....
T Consensus 169 ~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~---~g------------------~~k~~edl~~~ 227 (286)
T KOG1529|consen 169 ATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDP---DG------------------FIKPAEDLKHL 227 (286)
T ss_pred ccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccc---cc------------------ccCCHHHHHHH
Confidence 34578999999999886 589999999999876542 11 12222333333
Q ss_pred hhh-cCCCCCeEEEEcCCChhHHHHHHHHHHcC
Q 025953 130 VKS-QFSPESKLLVVCQEGLRYIRFCRFHRAAR 161 (245)
Q Consensus 130 l~~-~l~~d~~VVVyC~~G~RS~~aa~~L~~~G 161 (245)
+.. .+..++++|+-|..|..+...+-.|...|
T Consensus 228 f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g 260 (286)
T KOG1529|consen 228 FAQKGLKLSKPVIVSCGTGISASIIALALERSG 260 (286)
T ss_pred HHhcCcccCCCEEEeeccchhHHHHHHHHHhcC
Confidence 322 25568999999999999999999999876
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.06 E-value=4e-06 Score=77.11 Aligned_cols=134 Identities=19% Similarity=0.305 Sum_probs=97.0
Q ss_pred cCCCcccHHHHHHHHhCC------CcEEEecCChhHHhhcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccCCCC
Q 025953 46 ADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~------~~vLIDVR~~~Ey~~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~ 119 (245)
...+.|++|.|+++++.. +.+|||+|-+.||..|||.+|+||.-..-. +.+ |...+
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l-----~~~------------F~hkp- 300 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKL-----GLL------------FRHKP- 300 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHH-----HHH------------HHhcc-
Confidence 346789999999998642 356999999999999999999999642211 100 00000
Q ss_pred CCCChHHHHHhhhcCCCCCeEEEEcC-CChhHHHHHHHHHHcCCCc-----eecccccCCCCcccccccccccccccccc
Q 025953 120 TKQNPEFVQSVKSQFSPESKLLVVCQ-EGLRYIRFCRFHRAARCWK-----SWFGYSSRQDFSCTWNCAYLCISIHHFLP 193 (245)
Q Consensus 120 ~~~~~~f~~~l~~~l~~d~~VVVyC~-~G~RS~~aa~~L~~~G~~~-----~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~ 193 (245)
+.--.-+|+.|. +..|+..+|..|+...=.. -..-|+ .+.+|.||+.++..
T Consensus 301 --------------lThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yP---------evyIl~GGYk~fy~ 357 (427)
T COG5105 301 --------------LTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYP---------EVYILEGGYKKFYS 357 (427)
T ss_pred --------------ccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccc---------eEEEecCcHHHHhh
Confidence 111356899999 8999999999998764211 013455 67899999999966
Q ss_pred cccccccccccccccccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 194 RASREVVPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
+ -||.-+--||||----|.+.+|..+.
T Consensus 358 n----------------~p~lCdP~~YV~Mn~ae~~~~c~~~m 384 (427)
T COG5105 358 N----------------YPDLCDPKGYVTMNNAELDYRCLYKM 384 (427)
T ss_pred c----------------CccccCcccccccccHHHHHHHHHHH
Confidence 5 66777778899998899999997653
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.99 E-value=0.0029 Score=49.94 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=42.0
Q ss_pred CcccHHHHHHHHhCCCcEEEecCChhHHh------------hcCCCCeEeeCCccccCCCcchhhhhhhcccccCccccC
Q 025953 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYN------------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (245)
Q Consensus 49 ~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~------------~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g 116 (245)
..++++++.++.+.+=-.||+.|+..|=. ..+=-.-+|+|+..-
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~------------------------ 68 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG------------------------ 68 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT------------------------
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC------------------------
Confidence 56999999998877666899999875421 011112456665421
Q ss_pred CCCCCCChHHHHHhhhcCC-CCCeEEEEcCCChhHHHHHHHHH
Q 025953 117 LPFTKQNPEFVQSVKSQFS-PESKLLVVCQEGLRYIRFCRFHR 158 (245)
Q Consensus 117 ~~~~~~~~~f~~~l~~~l~-~d~~VVVyC~~G~RS~~aa~~L~ 158 (245)
.+.++-++.+.+.+. .++||++||++|.||..++.+-+
T Consensus 69 ----~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 69 ----AITEEDVEAFADALESLPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp ----T--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHHHh
Confidence 112333333333332 25699999999999987765543
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.92 E-value=0.0048 Score=50.00 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=49.2
Q ss_pred CCcccHHHHHHHHhCCCcEEEecCChhHHhhcC----------CCC--eEeeCCccccCCCcchhhhhhhcccccCcccc
Q 025953 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAH----------IKS--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFF 115 (245)
Q Consensus 48 ~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GH----------IPG--AinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~ 115 (245)
...++++++..+.+.+=-.+||.|+..|-.... -+| -+|+|+..-
T Consensus 12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~----------------------- 68 (135)
T TIGR01244 12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG----------------------- 68 (135)
T ss_pred cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC-----------------------
Confidence 356899999887666556899999977643211 012 235554321
Q ss_pred CCCCCCCChHHHHHhhhcC-CCCCeEEEEcCCChhHHHHHHHHH
Q 025953 116 GLPFTKQNPEFVQSVKSQF-SPESKLLVVCQEGLRYIRFCRFHR 158 (245)
Q Consensus 116 g~~~~~~~~~f~~~l~~~l-~~d~~VVVyC~~G~RS~~aa~~L~ 158 (245)
.++++-+..+.+.+ ..+.+|++||.+|.|+..++.++.
T Consensus 69 -----~~~~~~v~~f~~~~~~~~~pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 69 -----DITPDDVETFRAAIGAAEGPVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred -----CCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHH
Confidence 01122222222222 235899999999999888765443
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.36 E-value=0.16 Score=41.95 Aligned_cols=121 Identities=13% Similarity=0.214 Sum_probs=49.1
Q ss_pred hhhhccCCCcccHHHHHHHHhCCCcEEEecCChhHHhhc---CCCCeE--eeCCccccCCC--cchhhhh--hhcccccC
Q 025953 41 NLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRA---HIKSSY--HVPLFIENQDN--DLGTIIK--RTVHNNFS 111 (245)
Q Consensus 41 ~~~~~~~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~G---HIPGAi--nIPl~~l~~~~--~~~~l~k--~~~~~~~~ 111 (245)
.+-+.+....+|+++...+.+-+=-.|||.|++.|.... .++|.. |+|+....... ....... ......+.
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGML 99 (164)
T ss_dssp SEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHH
T ss_pred cEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHH
Confidence 345556778899999988875555689999999998753 344544 45654332210 0000000 00000001
Q ss_pred ccccCCCCCCCChHHHHHhhhc-CCCCCeEEEEcCCC-hhHHH-HHHHHHHcCCC
Q 025953 112 GLFFGLPFTKQNPEFVQSVKSQ-FSPESKLLVVCQEG-LRYIR-FCRFHRAARCW 163 (245)
Q Consensus 112 ~l~~g~~~~~~~~~f~~~l~~~-l~~d~~VVVyC~~G-~RS~~-aa~~L~~~G~~ 163 (245)
..+..+ .....+-+.++++. .+...++++.|..| .|... ++-+|..+|+.
T Consensus 100 ~~Y~~~--~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 100 EFYREM--LESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHG--GGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHH--HHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 111111 11113334444433 33447999999966 45554 45566667764
No 65
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=91.87 E-value=0.72 Score=36.20 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCCcEEEecCChhHHhhcCCC--CeEeeCCccccCCCcchhhhhhhcccccCccccCCCCCCCChHHHHHhhhcCCCCCe
Q 025953 62 VERYAVLDVRDNSQYNRAHIK--SSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESK 139 (245)
Q Consensus 62 ~~~~vLIDVR~~~Ey~~GHIP--GAinIPl~~l~~~~~~~~l~k~~~~~~~~~l~~g~~~~~~~~~f~~~l~~~l~~d~~ 139 (245)
.+-..+||+++..++..-+.+ .-.++|+.+.... ..... -+++.+.+......+.+
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~---------------------~~~~~~~i~~~~~~~~~ 83 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ-DISKY---------------------FDEAVDFIDDAREKGGK 83 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC-ChHHH---------------------HHHHHHHHHHHHhcCCc
Confidence 344589999998875222222 2456676543311 10000 02233333333445689
Q ss_pred EEEEcCCCh-hHHHH--HHHHHHc
Q 025953 140 LLVVCQEGL-RYIRF--CRFHRAA 160 (245)
Q Consensus 140 VVVyC~~G~-RS~~a--a~~L~~~ 160 (245)
|+|+|..|. ||..+ +.++...
T Consensus 84 vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 84 VLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred EEEECCCCCchhHHHHHHHHHHHc
Confidence 999999775 87754 3344433
No 66
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.59 E-value=0.69 Score=37.40 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCCcccHHHHHHHHhCCCcEEEecCChhHHh-------------hcCCCCeEeeCCccccCCCcchhhhhhhcccccCcc
Q 025953 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYN-------------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGL 113 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~-------------~GHIPGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l 113 (245)
-...|+++++.++...+-..||--|+..|=. +..++ ..+||+..-.
T Consensus 12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~-------------------- 70 (130)
T COG3453 12 VSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGG-------------------- 70 (130)
T ss_pred ecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCC--------------------
Confidence 3467999999988766656799999854421 11111 3344542210
Q ss_pred ccCCCCCCCChHHHHHhhhcCC-CCCeEEEEcCCChhHHHHHHHHHHcC
Q 025953 114 FFGLPFTKQNPEFVQSVKSQFS-PESKLLVVCQEGLRYIRFCRFHRAAR 161 (245)
Q Consensus 114 ~~g~~~~~~~~~f~~~l~~~l~-~d~~VVVyC~~G~RS~~aa~~L~~~G 161 (245)
.-++-++.+.++++ -+-||+.||++|.||...+.+-+..|
T Consensus 71 --------iT~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~~~~~~ 111 (130)
T COG3453 71 --------ITEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGLGELDG 111 (130)
T ss_pred --------CCHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHHHHHhc
Confidence 11233344444443 36899999999999999887666544
No 67
>PLN02727 NAD kinase
Probab=89.61 E-value=1.2 Score=46.90 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=47.8
Q ss_pred cCCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCC------------CCeEeeCCccccCCCcchhhhhhhcccccCcc
Q 025953 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHI------------KSSYHVPLFIENQDNDLGTIIKRTVHNNFSGL 113 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHI------------PGAinIPl~~l~~~~~~~~l~k~~~~~~~~~l 113 (245)
.....++++++..+.+.+=-.||+.|+..|- .+.. -.-+|+|+..-
T Consensus 264 ~rsgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~--------------------- 321 (986)
T PLN02727 264 WRGGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVR--------------------- 321 (986)
T ss_pred EEeCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCC---------------------
Confidence 3456899999998877665589999997762 1111 12345554221
Q ss_pred ccCCCCCCCChHHHHHhhhcC-C-CCCeEEEEcCCChh
Q 025953 114 FFGLPFTKQNPEFVQSVKSQF-S-PESKLLVVCQEGLR 149 (245)
Q Consensus 114 ~~g~~~~~~~~~f~~~l~~~l-~-~d~~VVVyC~~G~R 149 (245)
..|.++.++++.+.+ . ..+||+++|.+|.|
T Consensus 322 ------~apt~EqVe~fa~~l~~slpkPVLvHCKSGar 353 (986)
T PLN02727 322 ------TAPSAEQVEKFASLVSDSSKKPIYLHSKEGVW 353 (986)
T ss_pred ------CCCCHHHHHHHHHHHHhhcCCCEEEECCCCCc
Confidence 122345555555555 2 35899999999874
No 68
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=89.39 E-value=1.8 Score=34.11 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=20.2
Q ss_pred cCCCCCeEEEEcCCCh-hHHH--HHHHHHHcCC
Q 025953 133 QFSPESKLLVVCQEGL-RYIR--FCRFHRAARC 162 (245)
Q Consensus 133 ~l~~d~~VVVyC~~G~-RS~~--aa~~L~~~G~ 162 (245)
....+.+|+|+|..|. ||.. +++++...|+
T Consensus 74 ~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 74 AEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred HhcCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 3456789999999774 7765 3445555554
No 69
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=88.55 E-value=0.38 Score=48.03 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=39.4
Q ss_pred hccCCCcccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCcc
Q 025953 44 IRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFI 91 (245)
Q Consensus 44 ~~~~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~ 91 (245)
.+..++.|+++++..+ +...++|.|...||.++|+++++|+|+..
T Consensus 617 ~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~ 661 (725)
T KOG1093|consen 617 SSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNN 661 (725)
T ss_pred hhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccc
Confidence 3456889999999886 56789999999999999999999999983
No 70
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=84.21 E-value=0.21 Score=46.24 Aligned_cols=41 Identities=7% Similarity=-0.011 Sum_probs=33.3
Q ss_pred cccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCcc
Q 025953 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFI 91 (245)
Q Consensus 50 ~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~ 91 (245)
.-+++++.+.+.. ....+|+|....|..+||||++|+|...
T Consensus 15 i~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~ 55 (314)
T PRK00142 15 IEDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQ 55 (314)
T ss_pred CCCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHH
Confidence 3467788776644 4678999999999999999999999743
No 71
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=84.17 E-value=0.74 Score=39.17 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=30.9
Q ss_pred ccccccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 199 VVPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...++|.++-+...+.+.|-|..|.|||++|+-.-.
T Consensus 16 ~~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 16 GETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 445688888888889999999999999999987653
No 72
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=81.91 E-value=1.1 Score=36.50 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.9
Q ss_pred ccCCceEeecCCcccchhhHhhhhhhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQHASQM 238 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
+...+.|.|.|-.|+|||+|.+....+..+
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 445678999999999999999988776554
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=81.85 E-value=1 Score=34.16 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=21.4
Q ss_pred CCceEeecCCcccchhhHhhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
....|.+.|-+|+|||.+++.+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999886543
No 74
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.00 E-value=1.2 Score=31.68 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.1
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+..-|.|-+|+|||++|.-+|.+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999888765
No 75
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=80.45 E-value=6.1 Score=36.61 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHhCCCcEEEecCChhHHhh---cCCC
Q 025953 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIK 82 (245)
Q Consensus 47 ~~~~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~---GHIP 82 (245)
....+...++.+.+.+.+..+||+|+..+|.. ||||
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 35778999999998888889999999999997 8887
No 76
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=78.56 E-value=1.3 Score=38.61 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=32.9
Q ss_pred cccccccccccccccccccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 186 ISIHHFLPRASREVVPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
+..+.|+...-++.+....-.|-+..-+.+-|-|-.|+|||++|+-+-
T Consensus 21 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred hhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455666543222223344456677778899999999999999998664
No 77
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=77.96 E-value=2.1 Score=37.12 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=30.6
Q ss_pred cccccccccccCC--ceEeecCCcccchhhHhhhhhhhhhh
Q 025953 200 VPVVPCELVLKIP--DFVDLNPCVTVGEIEFLKNCQHASQM 238 (245)
Q Consensus 200 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
..++|-++.+... ..+.|.|..|+|||.+|+.+.....|
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l 55 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL 55 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH
Confidence 3567777777654 78999999999999999988654433
No 78
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=76.67 E-value=1.4 Score=38.31 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.9
Q ss_pred EeecCCcccchhhHhhhhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
+.|||-+|+|||.+|.-|.|.-+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999877643
No 79
>PF13245 AAA_19: Part of AAA domain
Probab=76.56 E-value=1.8 Score=31.59 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=16.5
Q ss_pred CceEeecCCcccchhhHhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (245)
..++.+.|+.|+|||+.+-++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~ 30 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAAR 30 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457788999999999665544
No 80
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=76.41 E-value=1.6 Score=36.80 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=21.9
Q ss_pred ceEeecCCcccchhhHhhhhhhhhhhhhcc
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHASQMAKGE 242 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
+-+.|-|-+||||++++|..--...+.-++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~ 65 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGE 65 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhh
Confidence 889999999999999999876665555443
No 81
>PRK08727 hypothetical protein; Validated
Probab=76.34 E-value=1.9 Score=37.80 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.6
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+.+.|+|-+|+|||.++...-|+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999985554
No 82
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.10 E-value=2.1 Score=40.84 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=22.6
Q ss_pred CCceEeecCCcccchhhHhhhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
-|..|.+.|-||||||+.+.+.-+.-+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999988866544
No 83
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=75.18 E-value=2.9 Score=35.49 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=30.3
Q ss_pred ccccccccccccCC-ceEeecCCcccchhhHhhhhhhhh
Q 025953 199 VVPVVPCELVLKIP-DFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 199 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
...++|-++-+... +.+.|-|.+|+|||++|+-.-++.
T Consensus 14 ~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~ 52 (200)
T cd03280 14 GEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLT 52 (200)
T ss_pred CCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 44567778888777 489999999999999999865433
No 84
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=74.36 E-value=2.5 Score=35.29 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.0
Q ss_pred cccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.++..|.|.|+|--|.|||+|.+.+-.+-
T Consensus 21 ~l~~g~Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 21 ALKAGDVVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred hCCCCCEEEEEcCCcCChHHHHHHHHHHc
Confidence 46788999999999999999998876554
No 85
>PRK09183 transposase/IS protein; Provisional
Probab=74.27 E-value=4.1 Score=36.48 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHcCCCceecccccCCCCcccccccccccccccccccccccccccccccccccCCceEeecCCcccchhh
Q 025953 148 LRYIRFCRFHRAARCWKSWFGYSSRQDFSCTWNCAYLCISIHHFLPRASREVVPVVPCELVLKIPDFVDLNPCVTVGEIE 227 (245)
Q Consensus 148 ~RS~~aa~~L~~~G~~~~~~Gy~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (245)
.+..+....++.++|-.. +...+| ++.+.++....-+.. ...++| +.-.+-|.|.|-+|+|||.
T Consensus 54 R~~~~~~~~~k~a~~p~~----~~l~~f----d~~~~~~~~~~~i~~-------L~~~~~-i~~~~~v~l~Gp~GtGKTh 117 (259)
T PRK09183 54 RHQRKQAMYTRMAAFPAV----KTFEEY----DFTFATGAPQKQLQS-------LRSLSF-IERNENIVLLGPSGVGKTH 117 (259)
T ss_pred HHHHHHHHHHHhCCCCCC----CcHhhc----ccccCCCCCHHHHHH-------HhcCCc-hhcCCeEEEEeCCCCCHHH
Confidence 346677778888887421 333334 333333332222111 223444 5556789999999999999
Q ss_pred Hhhhhhhh
Q 025953 228 FLKNCQHA 235 (245)
Q Consensus 228 ~~~~~~~~ 235 (245)
+....-+.
T Consensus 118 La~al~~~ 125 (259)
T PRK09183 118 LAIALGYE 125 (259)
T ss_pred HHHHHHHH
Confidence 98876443
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=74.08 E-value=2.2 Score=37.40 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.3
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..+.|+|-+|+|||.++..+-|.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~ 68 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR 68 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999876554
No 87
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.04 E-value=2.5 Score=40.63 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=26.0
Q ss_pred CceEeecCCcccchhhHhhhhhhhhhhhhcc
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHASQMAKGE 242 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
...|.|-|-||||||+-|-+.-+-.-|-++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~ 233 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK 233 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC
Confidence 8999999999999999999887766555543
No 88
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=74.04 E-value=3.2 Score=37.60 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=21.9
Q ss_pred cCCceEeecCCcccchhhHhhhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.-+..|.+-|.||||||+++.+.-...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788899999999999998875543
No 89
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.71 E-value=2 Score=40.93 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=23.7
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..+.-...+.|-|.||||||+.+.+.-+.
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44555778899999999999999887654
No 90
>PRK15494 era GTPase Era; Provisional
Probab=73.40 E-value=3.3 Score=38.47 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=18.8
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+|.+-|..+||||++++....
T Consensus 54 kV~ivG~~nvGKSTLin~l~~ 74 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIG 74 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 899999999999999998643
No 91
>PRK10646 ADP-binding protein; Provisional
Probab=71.75 E-value=3.1 Score=34.74 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=23.6
Q ss_pred cccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.++..+.|-|+|--|+|||+|.+..-.+-
T Consensus 24 ~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 24 ACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred hCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44567789999999999999998775543
No 92
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=71.17 E-value=2.7 Score=36.76 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.7
Q ss_pred CceEeecCCcccchhhHhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+.++.|.|-+|+|||.+++....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999997744
No 93
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=70.88 E-value=2.5 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.8
Q ss_pred cccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.++.-+.|-|+|-.|+|||+|.+..-.+-
T Consensus 11 ~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 11 ILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35667899999999999999998765443
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=70.24 E-value=3.2 Score=35.70 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.4
Q ss_pred ceEeecCCcccchhhHhhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.-|.|+|-.|||||.+++...+..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999877653
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=70.16 E-value=2.9 Score=36.50 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.6
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
++.|+|-+|+|||.++...-|.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999875543
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=70.00 E-value=3.6 Score=34.95 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=21.5
Q ss_pred CCceEeecCCcccchhhHhhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.+..|.|+|-+|||||.++..+.+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999998776543
No 97
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=69.50 E-value=3 Score=37.04 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.2
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
--.|-++--|||-+-|-+|+|||++|+..-
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345667778999999999999999998754
No 98
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.24 E-value=4.1 Score=39.24 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=25.1
Q ss_pred cccccccccccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 200 VPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.++.+.++ +.-...+.+-|-+|||||+.+.+.-++.
T Consensus 210 l~~~~~~~-~~~~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 210 IPVRVEDI-LKQGGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred hCcccccc-ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444 4446788888999999999988765443
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=69.02 E-value=3.6 Score=36.08 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.9
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.+.|+|-+|+|||.++....|.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999976554
No 100
>PRK06620 hypothetical protein; Validated
Probab=68.87 E-value=2.8 Score=36.43 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=19.1
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..+.|+|-+|+|||.+++...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999875443
No 101
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=66.64 E-value=4 Score=36.28 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.+-+..-|||.+-|-.|+|||++||..-
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 3456677999999999999999999753
No 102
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=3.3 Score=39.45 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.9
Q ss_pred CCceEeecCCcccchhhHhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKN 231 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ 231 (245)
.|+=|-.-|-||||||||-..
T Consensus 49 ~PKNILMIGpTGVGKTEIARR 69 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARR 69 (444)
T ss_pred CccceEEECCCCCcHHHHHHH
Confidence 456778889999999999543
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=65.30 E-value=4.5 Score=39.29 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=23.4
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+-+..|..|.|+|-+|+|||.+.+...+
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999887654
No 104
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=65.26 E-value=5.7 Score=34.64 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=32.8
Q ss_pred cccccccccccccccccccccccccc--CCceEeecCCcccchhhHhhhhhhhhhh
Q 025953 185 CISIHHFLPRASREVVPVVPCELVLK--IPDFVDLNPCVTVGEIEFLKNCQHASQM 238 (245)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
.++.|-.++.. ....++|.++-+. ..+++.|-|.++.|||++|+-.--..-|
T Consensus 3 ~~~~hpll~~~--~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 56 (222)
T cd03285 3 KEARHPCVEAQ--DDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLM 56 (222)
T ss_pred cccCCCEEecc--CCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHH
Confidence 34445554442 2223445555554 4679999999999999999875544333
No 105
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=65.04 E-value=17 Score=28.13 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=19.2
Q ss_pred hcCCCCCeEEEEcCCC-hhHHHH--HHHHHHcCC
Q 025953 132 SQFSPESKLLVVCQEG-LRYIRF--CRFHRAARC 162 (245)
Q Consensus 132 ~~l~~d~~VVVyC~~G-~RS~~a--a~~L~~~G~ 162 (245)
....++.+|+|+|..| .||..+ +.++...|+
T Consensus 68 ~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 68 NAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred hhhcccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 3345678999999966 466543 344444443
No 106
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.86 E-value=5 Score=40.16 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.7
Q ss_pred cccccccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 198 EVVPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+.+|+.+++++ +-.+.|.|-|-+|||||+++.+.-+
T Consensus 337 ~~l~v~~~~~l-~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 337 KRLPVAPVDPL-ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred HhcCcCccccc-cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34477777764 5578999999999999999977543
No 107
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=64.85 E-value=3.7 Score=34.38 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=17.4
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|.+=|.+|||||++++..-..
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcc
Confidence 4666799999999999865443
No 108
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=64.30 E-value=4.6 Score=35.76 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=23.8
Q ss_pred ceEeecCCcccchhhHhhhhhhhhhhhhcc
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHASQMAKGE 242 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
+.+.+-|.+||||+++||...-...+.-|+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~ 150 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVND 150 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccc
Confidence 578899999999999999987655554444
No 109
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=63.77 E-value=4.9 Score=28.30 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=17.3
Q ss_pred EeecCCcccchhhHhhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (245)
|.+-|..|+|||++.+..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456799999999999887654
No 110
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=63.68 E-value=3.9 Score=38.10 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=19.6
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..-|.+-|-||+|||++|+-+-..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455789999999999999887543
No 111
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=63.67 E-value=4.4 Score=37.66 Aligned_cols=23 Identities=13% Similarity=-0.075 Sum_probs=19.0
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-+.|+|.+|+|||.+++.+.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999987643
No 112
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.59 E-value=6.1 Score=38.95 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=24.9
Q ss_pred cCCceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
.-+..+-|-|.||||||+.+.++-....+.+|
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 34567889999999999999988766554444
No 113
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=63.41 E-value=45 Score=28.38 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHhhhcCCCCCeEEEEcCCC--hhHHHHHHHHHHcC
Q 025953 126 FVQSVKSQFSPESKLLVVCQEG--LRYIRFCRFHRAAR 161 (245)
Q Consensus 126 f~~~l~~~l~~d~~VVVyC~~G--~RS~~aa~~L~~~G 161 (245)
+.+++...+.++.+|+++|.+| .....||-+|..+|
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 4555655677789999999965 44555777777765
No 114
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=62.98 E-value=4.7 Score=31.63 Aligned_cols=27 Identities=11% Similarity=-0.116 Sum_probs=21.8
Q ss_pred cccccCCceEeecCCcccchhhHhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
.|-+..-+++.|-|-+|+|||++++-.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHh
Confidence 344455689999999999999999874
No 115
>COG1162 Predicted GTPases [General function prediction only]
Probab=62.83 E-value=4.9 Score=37.26 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=26.7
Q ss_pred ceEeecCCcccchhhHhhhhhhhhhhhhcccC
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHASQMAKGEQS 244 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (245)
+...|-|-+||||+++||...-...+.-||-|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS 196 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEIS 196 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhc
Confidence 47889999999999999998877777766643
No 116
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=62.34 E-value=4 Score=37.51 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=32.5
Q ss_pred cccHHHHHHHHhCCCcEEEecCChhHHhhcCCCCeEeeCCccc
Q 025953 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIE 92 (245)
Q Consensus 50 ~Is~eeL~~ll~~~~~vLIDVR~~~Ey~~GHIPGAinIPl~~l 92 (245)
.++.+|+.+.+..++++++|+|+ +..||.+|+|+-+.-+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPal 43 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPAL 43 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHH
Confidence 47889999988888999999999 5679999999865443
No 117
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=62.18 E-value=5 Score=32.90 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=24.3
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34567778899999999999999998664
No 118
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=62.03 E-value=5.1 Score=37.62 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=31.0
Q ss_pred ccccccccc-ccccccccccccc----cccCCceEeecCCcccchhhHhhh
Q 025953 186 ISIHHFLPR-ASREVVPVVPCEL----VLKIPDFVDLNPCVTVGEIEFLKN 231 (245)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 231 (245)
||++....+ ...---|.++.|| =++.|+=|+|||+.|+|||-+-|.
T Consensus 188 GGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKA 238 (440)
T KOG0726|consen 188 GGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKA 238 (440)
T ss_pred ccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHH
Confidence 345555555 2222345555554 588999999999999999976553
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=61.92 E-value=5.4 Score=37.81 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=22.7
Q ss_pred cccCCceEeecCCcccchhhHhhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-+..|.-|-|+|-+|+|||.+.+...+.
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 3456778999999999999998876543
No 120
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.61 E-value=7.1 Score=37.78 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=22.7
Q ss_pred cccCCceEeecCCcccchhhHhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.+.-.+.|.|-|-+|||||+++.+.-+
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999987654
No 121
>PRK12288 GTPase RsgA; Reviewed
Probab=61.60 E-value=4.2 Score=38.21 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=22.6
Q ss_pred eEeecCCcccchhhHhhhhhhhhhhhhcc
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHASQMAKGE 242 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
-+.+=|.+||||+++||....-..+.-|+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~ 235 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGD 235 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeecc
Confidence 37789999999999999987555554444
No 122
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=61.34 E-value=5.3 Score=35.80 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=19.7
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+.-+.|+|-.|||||.+++...|.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 445789999999999999876554
No 123
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=61.33 E-value=5.3 Score=37.79 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=24.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.+-+..-+|+.|=|..|+|||++|+-.---
T Consensus 23 ~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cceeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34455666689999999999999999865433
No 124
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=60.86 E-value=5.1 Score=34.31 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.2
Q ss_pred CCceEeecCCcccchhhHhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-+++.|.|-+|.|||++|+-+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHhe
Confidence 36788999999999999998765
No 125
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=60.72 E-value=5.7 Score=36.15 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=22.5
Q ss_pred cCCceEeecCCcccchhhHhhhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
....+|.+-|.+|+|||+++....+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999876653
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=59.88 E-value=5.2 Score=35.45 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=17.9
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+.|+|-+|+|||.+.+.+.+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999887754
No 127
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=59.78 E-value=5.9 Score=33.66 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=25.0
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+++-|-|-.|+|||++|+-.-.
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3345666678999999999999999987654
No 128
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=58.85 E-value=6.3 Score=32.58 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=25.1
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-..-.
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4556667889999999999999999866443
No 129
>PHA03132 thymidine kinase; Provisional
Probab=58.71 E-value=7.8 Score=39.05 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred CceEeecCCcccchhhHhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.||.+-|+-|||||++++....
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e 279 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRG 279 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999987654
No 130
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=58.51 E-value=5.3 Score=37.17 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=20.5
Q ss_pred CCceEeecCCcccchhhHhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-..|.+-|-||+|||++|+.+-+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999997654
No 131
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=58.37 E-value=7.6 Score=33.67 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=20.8
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-+..|-|-|.+|+|||++.+.....
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999866543
No 132
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=58.11 E-value=6.1 Score=31.79 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=24.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-++.-+.+.|-|-+|+|||++++-+.--
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456666788999999999999999876443
No 133
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.99 E-value=5.8 Score=35.85 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=20.6
Q ss_pred ccCCceEeecCCcccchhhHhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
++.-.=|-|.|-+|+|||.++++|-
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhhh
Confidence 3445568899999999999999875
No 134
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=57.89 E-value=6 Score=37.20 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.9
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.+-++-=+|+.|=|-+|+|||++|+-.-
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4455566899999999999999998654
No 135
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=57.75 E-value=7.1 Score=35.80 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=19.7
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
++-+.++|-.|+|||++++..-|.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHH
Confidence 456789999999999999876554
No 136
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=57.41 E-value=7.2 Score=32.89 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.4
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+++-|-|-.|+|||++|+-+.
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3345667788999999999999999998654
No 137
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=57.29 E-value=7 Score=33.90 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=24.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|.+..-+++-|-|-.|+|||++|+-..-
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45677789999999999999999987653
No 138
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=57.27 E-value=7.6 Score=36.16 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=21.7
Q ss_pred ccCCceEeecCCcccchhhHhhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+..|.=|-|+|-+|+|||.+.+.+.+
T Consensus 153 ~~~p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 153 IEPPKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45567799999999999999987754
No 139
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.60 E-value=6.9 Score=33.68 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=25.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+...
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677789999999999999999877543
No 140
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=56.60 E-value=7.6 Score=35.63 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=20.0
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+..+.|+|-+|+|||.+++...+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999887653
No 141
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=56.59 E-value=6.4 Score=31.29 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=17.1
Q ss_pred eEeecCCcccchhhHhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~ 233 (245)
-+.+-|.+|||||+++|...
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47788999999999998754
No 142
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=56.51 E-value=7.4 Score=35.11 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=27.3
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
-++-+..=+||.|=|-+|+|||++|+..---.+-..|
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3455666789999999999999999876544333333
No 143
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=56.48 E-value=7.3 Score=33.75 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=23.8
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34566678999999999999999987643
No 144
>PRK12361 hypothetical protein; Provisional
Probab=56.09 E-value=31 Score=34.09 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.4
Q ss_pred cCCceEeecCCcccchh
Q 025953 210 KIPDFVDLNPCVTVGEI 226 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~ 226 (245)
...=+++.||..|.||.
T Consensus 242 ~~~~~iI~NP~SG~g~~ 258 (547)
T PRK12361 242 HKRAWLIANPVSGGGKW 258 (547)
T ss_pred CCceEEEECCCCCCCcH
Confidence 33448999999999985
No 145
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=55.86 E-value=6.3 Score=37.05 Aligned_cols=25 Identities=12% Similarity=-0.152 Sum_probs=20.2
Q ss_pred ccCCceEeecCCcccchhhHhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.+--.-|.+-|-||+|||++++-+-
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl 183 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLI 183 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHH
Confidence 3445668899999999999998764
No 146
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=55.79 E-value=6.5 Score=36.67 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=20.0
Q ss_pred cCCceEeecCCcccchhhHhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
+-..-|.+-|-||+|||++|+-+-
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~ 181 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAAL 181 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHH
Confidence 445678899999999999998763
No 147
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.73 E-value=6.6 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=24.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-.|+|||++|+-.-..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455666789999999999999999876543
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=55.68 E-value=6.9 Score=37.70 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.1
Q ss_pred cCCceEeecCCcccchhhHhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
.+|--|.|+|.+|+|||+++...
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~ 50 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQL 50 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHH
Confidence 46677899999999999987643
No 149
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=55.49 E-value=7 Score=34.31 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=25.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-+|+|||++|+-+.-.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 456677899999999999999999977543
No 150
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=55.33 E-value=9.4 Score=33.71 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=36.7
Q ss_pred cccccccccccccccccccccccccCCc--eEeecCCcccchhhHhhhhhhhhhhhh
Q 025953 186 ISIHHFLPRASREVVPVVPCELVLKIPD--FVDLNPCVTVGEIEFLKNCQHASQMAK 240 (245)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
++.|-.+++.. +....+|.++.+...+ ++.|.|....|||.+|+-.-.+.-||.
T Consensus 16 ~~~HPll~~~~-~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq 71 (235)
T PF00488_consen 16 EGRHPLLEEKL-ENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQ 71 (235)
T ss_dssp EE--TTHHHHT-TTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHT
T ss_pred eccCCEEeccc-cCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhh
Confidence 44455554422 3445577777777765 999999999999999998877766664
No 151
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=55.31 E-value=8.2 Score=36.06 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=31.1
Q ss_pred cCCCcccHHHHHHHHh------CCCcEEEecCChhHHhhcCCCCeE
Q 025953 46 ADVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSY 85 (245)
Q Consensus 46 ~~~~~Is~eeL~~ll~------~~~~vLIDVR~~~Ey~~GHIPGAi 85 (245)
.....++++++.++++ +.+.++||||++. |+..++|+-.
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 3456799999998883 2467899999988 9999998644
No 152
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=54.86 E-value=7.8 Score=33.38 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.2
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
|-+..-+.+-|-|-.|+|||++|+..-.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556678999999999999999987644
No 153
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=54.57 E-value=24 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=23.4
Q ss_pred HHHHhhhcCCCCCeEEEEcCCC-hhHHH--HHHHHHHcCCC
Q 025953 126 FVQSVKSQFSPESKLLVVCQEG-LRYIR--FCRFHRAARCW 163 (245)
Q Consensus 126 f~~~l~~~l~~d~~VVVyC~~G-~RS~~--aa~~L~~~G~~ 163 (245)
+++.+...+.+..+|+|.|.+| .||.. +|+++...|++
T Consensus 94 ~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 94 IVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 3344444566677999999965 45543 34566665543
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=54.57 E-value=8.1 Score=33.89 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=24.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-++.-+.+-|-|-+|+|||++|+-..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4566778899999999999999998764
No 155
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=54.42 E-value=8.4 Score=31.74 Aligned_cols=29 Identities=3% Similarity=-0.017 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 45566778899999999999999998654
No 156
>PRK06921 hypothetical protein; Provisional
Probab=54.31 E-value=8.6 Score=34.59 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=19.9
Q ss_pred CCceEeecCCcccchhhHhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
....+.|+|-+|+|||.++.-..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~ 139 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN 139 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999876544
No 157
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=54.28 E-value=8.2 Score=33.31 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34566677899999999999999998764
No 158
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=54.17 E-value=8.3 Score=34.25 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=22.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|.|.+|+|||++++...
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 3445556899999999999999998654
No 159
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=53.68 E-value=8.1 Score=32.71 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=25.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-.|+|||++|+-+.-.
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677789999999999999999876543
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=53.54 E-value=8.4 Score=38.23 Aligned_cols=27 Identities=26% Similarity=0.090 Sum_probs=22.8
Q ss_pred cccCCceEeecCCcccchhhHhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+..|.-|-|||-+|+|||.+.+.+.+
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 456788899999999999999877654
No 161
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=8.8 Score=36.70 Aligned_cols=48 Identities=25% Similarity=0.228 Sum_probs=33.2
Q ss_pred cccccccccccccc--ccccccc----cccCCceEeecCCcccchhhHhhhhhhh
Q 025953 187 SIHHFLPRASREVV--PVVPCEL----VLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 187 ~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
|++-.+.+ -+|++ |....|+ =+..|+=|-|||-.|+|||=+-+-|-|-
T Consensus 155 GL~~Qi~E-irE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 155 GLDEQIQE-IREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CHHHHHHH-HHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 44544333 44444 4444443 4678999999999999999998888663
No 162
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=53.35 E-value=8.7 Score=32.61 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=23.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHh
Confidence 4556667899999999999999998654
No 163
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=53.32 E-value=8.7 Score=34.81 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=22.6
Q ss_pred ceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
+.+.+-|-+|||||+++|..........|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g 190 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG 190 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence 67899999999999999977654444333
No 164
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=53.32 E-value=9.1 Score=35.13 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.1
Q ss_pred cCCceEeecCCcccchhhHhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+.|-.|-+-|.+|+|||++.+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4466888999999999999876543
No 165
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.31 E-value=8.3 Score=33.16 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=24.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+++-|-|-.|+|||++|+-..-.
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445667789999999999999999876543
No 166
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=53.23 E-value=8.2 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=24.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-.|+|||++|+-.-..
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456667889999999999999999876443
No 167
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=53.21 E-value=7.6 Score=36.05 Aligned_cols=25 Identities=4% Similarity=-0.005 Sum_probs=20.6
Q ss_pred cCCceEeecCCcccchhhHhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+-..-+.+-|-||+|||++++.+-+
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHH
Confidence 3556788889999999999997654
No 168
>PRK08939 primosomal protein DnaI; Reviewed
Probab=53.20 E-value=8.2 Score=35.53 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=19.8
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.+-+.|+|-+|||||-++.-.-|.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999998866544
No 169
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=53.19 E-value=8.4 Score=34.89 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=26.0
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
|.+.--+++.|=|-+|+|||++|+..-.--.-.+|
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 34455689999999999999999987654433333
No 170
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.98 E-value=9.1 Score=33.34 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-+|+|||++|+-..-.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455666789999999999999999977543
No 171
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=52.95 E-value=8.9 Score=33.39 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=24.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++-|-|-+|+|||++|+-+.-
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345566778999999999999999998853
No 172
>PHA03136 thymidine kinase; Provisional
Probab=52.89 E-value=7.9 Score=36.97 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=19.9
Q ss_pred CceEeecCCcccchhhHhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...|-|-|+-|||||++++..+.
T Consensus 36 ~~rvyieG~~gvGKTT~~~~l~~ 58 (378)
T PHA03136 36 LVLLYLDGPFGTGKTTTAKLLME 58 (378)
T ss_pred eEEEEEECCCcCCHHHHHHHHHh
Confidence 45788999999999999987765
No 173
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=52.88 E-value=8.9 Score=33.60 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=27.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
.|-+..-+++.+-|-+|.|||++|...---.|-..|
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G 57 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG 57 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCC
Confidence 445667789999999999999999876544444444
No 174
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=52.85 E-value=8.2 Score=33.29 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=25.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
.|-+..-+.+-|-|-.|+|||++++-.-..-+
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44556668999999999999999997765433
No 175
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.85 E-value=9.1 Score=33.49 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=24.7
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
...|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 25 NINIKILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred ceeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345666777899999999999999998664
No 176
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=52.81 E-value=8.2 Score=33.68 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=24.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+++-|-|-+|+|||++|+-....
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456666789999999999999999866543
No 177
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=52.80 E-value=9.5 Score=32.14 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=26.4
Q ss_pred cccccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 202 VVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
...-.|-+..-+.+-|-|-.|+|||++|+-....
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344566677789999999999999999866443
No 178
>PRK12377 putative replication protein; Provisional
Probab=52.77 E-value=8.5 Score=34.43 Aligned_cols=24 Identities=4% Similarity=-0.114 Sum_probs=20.0
Q ss_pred ceEeecCCcccchhhHhhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
..+.|+|-+|||||.++.-+.+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999998866654
No 179
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.75 E-value=8.1 Score=34.29 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=25.5
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
..-.|-+..-+.+-|-|-+|+|||++|+-...
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 33455666778999999999999999997653
No 180
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=52.74 E-value=9.3 Score=32.55 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=25.2
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455666778999999999999999987643
No 181
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=52.70 E-value=8.7 Score=32.44 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=23.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-+|+|||++|+-.--
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34555678899999999999999986643
No 182
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=52.64 E-value=9 Score=31.47 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=27.3
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
..-.|-+..-+.+-|-|-.|+|||++++-.....+
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34456677788999999999999999987654433
No 183
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=52.50 E-value=8.6 Score=32.82 Aligned_cols=31 Identities=6% Similarity=0.036 Sum_probs=24.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+...-.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3455667789999999999999999876543
No 184
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.44 E-value=9.3 Score=31.47 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=24.6
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-.|+|||++|+-.--
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 455666778999999999999999986643
No 185
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=52.43 E-value=8.6 Score=33.44 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566777899999999999999998764
No 186
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=52.42 E-value=9.1 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=23.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-.|+|||++|+-.-
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566778999999999999999998654
No 187
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=52.23 E-value=12 Score=32.37 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=26.3
Q ss_pred ccccccccccCC-ceEeecCCcccchhhHhhhhhh
Q 025953 201 PVVPCELVLKIP-DFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.++|.++.+... +++.|-|..|.|||.+|+-.-.
T Consensus 18 ~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 18 PFVPNDTELDPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEeeeEEecCCceEEEEECCCCCChHHHHHHHHH
Confidence 345666665543 8999999999999999997643
No 188
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=52.19 E-value=9.4 Score=32.41 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=24.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-.|+|||++|+-.--.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445566789999999999999999876443
No 189
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=52.14 E-value=9.3 Score=32.28 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=24.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.--.
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456667889999999999999999876443
No 190
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=52.13 E-value=9.4 Score=33.50 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=25.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+.+-|-|-+|+|||++|+-+.-.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34566677889999999999999999876543
No 191
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=52.02 E-value=8.2 Score=32.15 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.2
Q ss_pred eEeecCCcccchhhHhhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
-+-+=|.+||||++++|......
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 47788999999999999876543
No 192
>PRK00098 GTPase RsgA; Reviewed
Probab=51.96 E-value=7.8 Score=35.30 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.3
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+-+.+-|-+|||||+++|.....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999976543
No 193
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.90 E-value=9.7 Score=30.66 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=20.9
Q ss_pred ccccCCceEeecCCcccchhhHhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
+.+..-+.+-|-|-+|.|||++++-.
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l 45 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAI 45 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 34445579999999999999999754
No 194
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=51.80 E-value=8 Score=36.26 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.1
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-|.|-|+++||||+++|..-..
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~ 212 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGA 212 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3778899999999999976543
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=51.79 E-value=9.1 Score=34.17 Aligned_cols=22 Identities=5% Similarity=-0.118 Sum_probs=18.3
Q ss_pred ceEeecCCcccchhhHhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
..+.|+|-+|||||.++...-+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999887544
No 196
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=51.78 E-value=9.2 Score=33.36 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 4556667899999999999999998775
No 197
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.76 E-value=9.5 Score=33.23 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.9
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-+.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566677899999999999999998775
No 198
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=51.76 E-value=13 Score=30.45 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=28.0
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhhhhhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAK 240 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
+|.++.+..+.++.+-|-+|.|||.+|+-..-+.-|+.
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~ 49 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQ 49 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 44555555557999999999999999998655554443
No 199
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=51.65 E-value=8.8 Score=33.85 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=24.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+++-|-|-+|+|||++|+-.-..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345666789999999999999999876544
No 200
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=51.63 E-value=9.8 Score=32.86 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45666778999999999999999987643
No 201
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.61 E-value=21 Score=27.09 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=18.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHH
Q 025953 137 ESKLLVVCQEGLRYIRFCRFHRA 159 (245)
Q Consensus 137 d~~VVVyC~~G~RS~~aa~~L~~ 159 (245)
.++|++.|.+|..|..++..+++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~ 25 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNK 25 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHH
Confidence 47899999999988877776654
No 202
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=51.59 E-value=10 Score=30.81 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=15.4
Q ss_pred CceEeecCCcccchhhHhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (245)
|=-.-+||.|||||+.+-.-.
T Consensus 53 pLVlSfHG~tGtGKn~v~~li 73 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVSRLI 73 (127)
T ss_pred CEEEEeecCCCCcHHHHHHHH
Confidence 334568999999999865443
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.56 E-value=9.5 Score=33.76 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=22.5
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 445567889999999999999998764
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=51.55 E-value=11 Score=35.42 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=20.9
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
|..|.+-|-+|||||+.+.+.-+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999988877654
No 205
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=51.40 E-value=9.1 Score=34.04 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=26.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
.|-+..-+.+-|-|-+|+|||++|+-.--..+...|
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 64 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 455666789999999999999999876544333333
No 206
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=51.30 E-value=8.9 Score=36.89 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=19.9
Q ss_pred ceEeecCCcccchhhHhhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.-+.|+|-+|+|||.++....+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999998876654
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=51.28 E-value=9 Score=36.20 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.9
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-+.|+|-+|+|||.++..+.|.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999876554
No 208
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.16 E-value=9.6 Score=32.00 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=23.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-.|+|||++|+-..
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3456667899999999999999999765
No 209
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=51.13 E-value=8.4 Score=36.47 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=15.4
Q ss_pred EeecCCcccchhhHhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~ 232 (245)
+.+-|-||+|||++||-.
T Consensus 176 ILisGGTGSGKTTlLNal 193 (355)
T COG4962 176 ILISGGTGSGKTTLLNAL 193 (355)
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 567899999999999854
No 210
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=51.06 E-value=9.5 Score=32.38 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=25.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
-.|-+..-+.+-|-|-+|+|||++|+-......
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345566778999999999999999987655433
No 211
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=50.95 E-value=9.5 Score=33.00 Aligned_cols=33 Identities=6% Similarity=-0.020 Sum_probs=26.6
Q ss_pred cccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 202 VVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.....|-+..-+.+-|-|-.|+|||++|+-+--
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344556777888999999999999999987653
No 212
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=50.88 E-value=10 Score=32.24 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=24.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-.|+|||++|+-.--.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456667789999999999999999876543
No 213
>PRK09087 hypothetical protein; Validated
Probab=50.68 E-value=9.3 Score=33.46 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=17.8
Q ss_pred ceEeecCCcccchhhHhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..+.|+|-+|+|||.++....
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357899999999999998644
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=50.60 E-value=9.5 Score=35.57 Aligned_cols=25 Identities=4% Similarity=-0.113 Sum_probs=19.8
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..+-+.|+|-+|||||.++.-.-+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH
Confidence 3467889999999999988765443
No 215
>PRK06526 transposase; Provisional
Probab=50.51 E-value=10 Score=33.90 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=22.1
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
++|+ .-+.-|.|+|-+|||||.+....-+
T Consensus 92 ~~fi-~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 92 LDFV-TGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred Cchh-hcCceEEEEeCCCCchHHHHHHHHH
Confidence 4444 3456789999999999999886544
No 216
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.51 E-value=9.6 Score=33.17 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=24.9
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+--
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455667788999999999999999987654
No 217
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.42 E-value=10 Score=32.96 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=23.9
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556677899999999999999998776
No 218
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=50.25 E-value=11 Score=32.26 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=23.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34556677899999999999999998654
No 219
>PLN02165 adenylate isopentenyltransferase
Probab=50.15 E-value=13 Score=34.92 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=18.3
Q ss_pred CCceEeecCCcccchhhHhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-.+.|.|-|-||+|||++....
T Consensus 42 ~g~iivIiGPTGSGKStLA~~L 63 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDL 63 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 4558999999999999987653
No 220
>PRK10908 cell division protein FtsE; Provisional
Probab=50.12 E-value=9.8 Score=32.51 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=24.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-+|+|||++|+-..-
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345667788999999999999999987643
No 221
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=50.07 E-value=10 Score=33.56 Aligned_cols=27 Identities=11% Similarity=0.173 Sum_probs=22.7
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+++-|-|-+|+|||++|+-+-
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 455567899999999999999998764
No 222
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.99 E-value=11 Score=39.21 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=22.5
Q ss_pred ccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
+.-.+.|-|-|-||||||+.+.++-...
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3446789999999999999988876544
No 223
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.97 E-value=10 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=23.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556678899999999999999987643
No 224
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=49.82 E-value=11 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=24.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-+|+|||++|+-..-
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566778999999999999999987743
No 225
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.66 E-value=11 Score=32.89 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=25.6
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445667778899999999999999998874
No 226
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.66 E-value=11 Score=32.99 Aligned_cols=28 Identities=11% Similarity=0.091 Sum_probs=23.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-+-
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 26 TISIPKNRVTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455667889999999999999999875
No 227
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=49.63 E-value=10 Score=34.97 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=21.1
Q ss_pred cCCceEeecCCcccchhhHhhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-..+|.|-|-.|+|||++|+..-..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999999766443
No 228
>PRK08181 transposase; Validated
Probab=49.36 E-value=9.4 Score=34.57 Aligned_cols=25 Identities=12% Similarity=-0.189 Sum_probs=20.7
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-..-|.|+|-+|||||.++....+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHH
Confidence 4567999999999999999876553
No 229
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=49.33 E-value=11 Score=33.60 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=22.6
Q ss_pred cccCCceEeecCCcccchhhHhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+..-+++-|-|-+|+|||++|+-..-
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 455568999999999999999997753
No 230
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=49.32 E-value=16 Score=31.44 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=26.6
Q ss_pred cccccccccC--CceEeecCCcccchhhHhhhhhhhhhhh
Q 025953 202 VVPCELVLKI--PDFVDLNPCVTVGEIEFLKNCQHASQMA 239 (245)
Q Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
++|.++.+.. .+++.|-|-+|.|||++|+-.-....|+
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la 56 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA 56 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3344444443 4799999999999999998765444443
No 231
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=49.18 E-value=7.7 Score=38.10 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCcccHHHHHHHH--hCC--CcEEEecCChhHHhhcCCCCeEeeCCc
Q 025953 48 VNYVNAEEAKNLI--AVE--RYAVLDVRDNSQYNRAHIKSSYHVPLF 90 (245)
Q Consensus 48 ~~~Is~eeL~~ll--~~~--~~vLIDVR~~~Ey~~GHIPGAinIPl~ 90 (245)
.-.|+.-|+.+.- ..+ +..+||.|+.++|+.||+-.|.|+.-.
T Consensus 306 CLpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~ 352 (669)
T KOG3636|consen 306 CLPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCV 352 (669)
T ss_pred ccchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHH
Confidence 3446666665432 223 457999999999999999999998643
No 232
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=49.15 E-value=10 Score=32.74 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-.|+|||++++-+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667889999999999999999877543
No 233
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=48.83 E-value=12 Score=31.72 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.6
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+.+-|-|-+|+|||++++-.-..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556777889999999999999999876443
No 234
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.82 E-value=12 Score=35.69 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=22.6
Q ss_pred cccCCceEeecCCcccchhhHhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+..|.-|-|+|-+|+|||.+.+.+-+
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999987654
No 235
>CHL00195 ycf46 Ycf46; Provisional
Probab=48.77 E-value=13 Score=36.75 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=25.5
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.++-+..|+-|-|+|..|+|||.+.+..-+.
T Consensus 252 ~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 252 SNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4556778899999999999999998776544
No 236
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=48.46 E-value=10 Score=34.80 Aligned_cols=24 Identities=4% Similarity=-0.091 Sum_probs=19.6
Q ss_pred CCceEeecCCcccchhhHhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...-+.+-|-||+|||++++-+-+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999987653
No 237
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.29 E-value=11 Score=32.77 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=24.9
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34667778999999999999999999874
No 238
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=48.15 E-value=10 Score=39.21 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=23.5
Q ss_pred ccCCceEeecCCcccchhhHhhhhhhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
+...+++.|.|..|+|||.+|+...++-+
T Consensus 365 ~~s~~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 365 TGSGDIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred hcCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 34457999999999999999998766543
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.14 E-value=11 Score=32.18 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=25.1
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+++-|-|-.|+|||++|+-.-.
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455666778999999999999999987643
No 240
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=48.10 E-value=11 Score=33.50 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=24.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+++-|-|-.|+|||++|+-....
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455666789999999999999999977543
No 241
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=48.03 E-value=10 Score=30.52 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=18.9
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-+.+-|+++|||++++|.....
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHcc
Confidence 34678999999999999987653
No 242
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=47.96 E-value=11 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=25.5
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
..-.|-+..-+.+-|-|-.|+|||++++-+.-
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 33456667778999999999999999987653
No 243
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=47.95 E-value=11 Score=33.94 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.8
Q ss_pred cccCCceEeecCCcccchhhHhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-+.-.|||++-|-.|.||+++||...
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~ia 53 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIA 53 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhh
Confidence 34456899999999999999998653
No 244
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=47.88 E-value=13 Score=33.35 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=18.4
Q ss_pred cCCceEeecCCcccchhhHhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+..+-+.++|-.|+|||++-+..-+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHH
T ss_pred CCcceEEEECCCccchhHHHHHHHh
Confidence 3467799999999999998776543
No 245
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.88 E-value=14 Score=35.57 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=29.3
Q ss_pred cccccccccccccccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 190 HFLPRASREVVPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|+-..-+..+|+.++. .+.-+..|.+-|-+|||||+++.+.-+
T Consensus 185 ~~~~~~L~~~l~~~~~~-~~~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 185 DWFVPYLSGKLAVEDSF-DLSNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred HHHHHHhcCcEeeCCCc-eecCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34333333344444433 346688999999999999999888654
No 246
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=47.66 E-value=12 Score=31.50 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=17.7
Q ss_pred CceEeecCCcccchhhHhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
..-+.|.|-+|+|||-+...+-+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~ 69 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN 69 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH
Confidence 45688999999999998776644
No 247
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=47.63 E-value=11 Score=35.55 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.1
Q ss_pred CCceEeecCCcccchhhHhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
.-..|.+-|-||+|||++|+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aL 154 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAI 154 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999864
No 248
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=47.60 E-value=11 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=24.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+--
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 345666778999999999999999987653
No 249
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.56 E-value=12 Score=32.64 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=23.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-.|+|||++|+-..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSIN 51 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456677899999999999999998764
No 250
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=47.53 E-value=12 Score=31.80 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=24.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-.|-+..-+.+-|.|-.|+|||++|+-.-
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (218)
T cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345667778899999999999999998664
No 251
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.52 E-value=12 Score=32.59 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=24.1
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++++-.-
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566677899999999999999998664
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=47.47 E-value=13 Score=38.21 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=22.8
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
+-+..+.-|.|+|-+|+|||.+++-..+
T Consensus 207 ~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 207 LGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred cCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 3456678899999999999999876544
No 253
>PHA03133 thymidine kinase; Provisional
Probab=47.35 E-value=12 Score=35.59 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=19.0
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
=+|-|.|+-|||||+.++....+
T Consensus 41 ~rvYlDG~~GvGKTTt~~~l~~a 63 (368)
T PHA03133 41 LRIYVDGPHGLGKTTTAAALAAA 63 (368)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHh
Confidence 37889999999999999766544
No 254
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=47.32 E-value=11 Score=33.15 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=24.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-+|+|||++|+-+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345666789999999999999999976543
No 255
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=47.31 E-value=12 Score=33.13 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-+.-
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44566678999999999999999997753
No 256
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=47.30 E-value=11 Score=36.39 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=18.7
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-+.|||-+|+|||.++....|.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHH
Confidence 3889999999999999866654
No 257
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.25 E-value=12 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=24.8
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.+-|-|-+|+|||++|+-+..-
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456677789999999999999999877543
No 258
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.22 E-value=13 Score=32.50 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-.|+|||++|+-..
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3556667899999999999999998764
No 259
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=47.22 E-value=12 Score=32.49 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=25.8
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...|-+..-+.+-|-|-+|+|||++|+-..-
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4456677788999999999999999997753
No 260
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.10 E-value=12 Score=32.79 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++|+-..
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 34556667899999999999999999764
No 261
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=47.02 E-value=12 Score=33.68 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=18.4
Q ss_pred CceEeecCCcccchhhHhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-..|.+-|-||+|||++|+.+
T Consensus 80 ~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 357899999999999999865
No 262
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=46.70 E-value=12 Score=33.13 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=25.4
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.+-|-|-+|+|||++|+-..-
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456677789999999999999999986643
No 263
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=46.64 E-value=13 Score=32.77 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-+.
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456667899999999999999998764
No 264
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=46.64 E-value=12 Score=32.41 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 45667788999999999999999987643
No 265
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=46.61 E-value=18 Score=31.73 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=27.5
Q ss_pred ccccccc--ccCCceEeecCCcccchhhHhhhhhhhhhhh
Q 025953 202 VVPCELV--LKIPDFVDLNPCVTVGEIEFLKNCQHASQMA 239 (245)
Q Consensus 202 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
++|.++. +...+.+.|-|-.|.|||.+|+-.--...||
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la 58 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA 58 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 4456899999999999999998776554444
No 266
>CHL00181 cbbX CbbX; Provisional
Probab=46.59 E-value=11 Score=34.31 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=17.0
Q ss_pred EeecCCcccchhhHhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ 234 (245)
+.|+|-+|||||.+.+..-+
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999877643
No 267
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.44 E-value=13 Score=31.51 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=25.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-.|+|||++|+-+.-.
T Consensus 26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 3456667789999999999999999876543
No 268
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=46.40 E-value=13 Score=32.79 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.8
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-+|+|||++|+-+--
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 45566778999999999999999987643
No 269
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=46.28 E-value=13 Score=32.85 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=25.8
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+.+-|-|-.|+|||++|+-+-
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445677778899999999999999998764
No 270
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.23 E-value=20 Score=34.67 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=21.0
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-|-.|.+-|.+|+|||++.-+.-..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3667889999999999998887655
No 271
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=46.14 E-value=12 Score=32.85 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=25.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+.-
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 355677788999999999999999987653
No 272
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.05 E-value=13 Score=33.26 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-..
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455667899999999999999998764
No 273
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.04 E-value=12 Score=32.29 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=25.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-....
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677889999999999999999876443
No 274
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=46.03 E-value=10 Score=33.54 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=18.2
Q ss_pred CceEeecCCcccchhhHhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (245)
..-|.+-|-||+|||++++..
T Consensus 127 ~~~ili~G~tGSGKTT~l~al 147 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNAL 147 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHH
Confidence 567889999999999999765
No 275
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=45.93 E-value=13 Score=32.97 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=25.4
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+.+-|-|-.|+|||++|+-.-..
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33456667789999999999999999876544
No 276
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=45.84 E-value=13 Score=33.21 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-..
T Consensus 30 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4455667899999999999999998764
No 277
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=45.79 E-value=14 Score=32.07 Aligned_cols=31 Identities=6% Similarity=-0.050 Sum_probs=24.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-++.-+.+-|-|-+|+|||++|+-.--
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3445677788999999999999999986543
No 278
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=45.74 E-value=14 Score=36.47 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.7
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-|-+|.+.|.+|||||++...+.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~ 278 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYR 278 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998877654
No 279
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=45.53 E-value=11 Score=30.34 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.7
Q ss_pred eEeecCCcccchhhHhhhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
-|.+=|-+||||++++|..-....
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCc
Confidence 355789999999999998755433
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=45.48 E-value=14 Score=35.93 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=21.6
Q ss_pred cCCceEeecCCcccchhhHhhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..|-.|.+.|-+|||||+.+.+.-+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35778999999999999998877543
No 281
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=45.44 E-value=13 Score=32.54 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=24.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-+.-
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34566678999999999999999987753
No 282
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=45.42 E-value=13 Score=33.10 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345556678999999999999999987643
No 283
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.32 E-value=12 Score=35.55 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=17.7
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+.|+|-.|||||++.+...+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999987643
No 284
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=45.31 E-value=14 Score=32.27 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=25.1
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 3445667778899999999999999998654
No 285
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=45.24 E-value=14 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+.|-|-.|.|||++|+-.-
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~ 52 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALL 52 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566778899999999999999998653
No 286
>PRK08116 hypothetical protein; Validated
Probab=45.21 E-value=13 Score=33.39 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=17.4
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+.|+|-+|+|||.++.-.-+
T Consensus 116 gl~l~G~~GtGKThLa~aia~ 136 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIAN 136 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999875444
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=45.17 E-value=14 Score=31.22 Aligned_cols=31 Identities=6% Similarity=0.036 Sum_probs=25.1
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 25 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~ 55 (207)
T cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALF 55 (207)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445566677899999999999999998764
No 288
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=45.15 E-value=11 Score=34.36 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.9
Q ss_pred ccCCceEeecCCcccchhhHhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
++--.-|.+-|-||+|||++|+-+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al 164 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSL 164 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHH
Confidence 445678999999999999999854
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=45.06 E-value=16 Score=33.03 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=20.1
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-+..|.+-|-+|||||+.+.+.-+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4677888899999999988776544
No 290
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=45.00 E-value=14 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.3
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.-.|-+..-+.|-|-|-+|+|||++|+-+.-
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 53 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34456777889999999999999999987654
No 291
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=44.95 E-value=14 Score=31.30 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=25.2
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+++-|-|-.|+|||++|+-.-
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445667788999999999999999998653
No 292
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=44.85 E-value=17 Score=35.36 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.7
Q ss_pred ceEeecCCcccchhhHhhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.-+.|+|-+|+|||.++....|.-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999998776643
No 293
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=44.76 E-value=14 Score=35.93 Aligned_cols=25 Identities=28% Similarity=0.138 Sum_probs=20.6
Q ss_pred cCCceEeecCCcccchhhHhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
++|.-|-|+|-.|+|||.+.+..-+
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999887644
No 294
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=44.75 E-value=14 Score=37.61 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=20.6
Q ss_pred ceEeecCCcccchhhHhhhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
..+.|+|-+|+|||.+|+.+-|...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999998776543
No 295
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=44.65 E-value=15 Score=31.26 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=23.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++++-.-
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 34566667899999999999999998654
No 296
>PRK11058 GTPase HflX; Provisional
Probab=44.65 E-value=12 Score=36.13 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=18.5
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|.|-|+++||||+++|..-++
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~ 220 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEA 220 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3678899999999999987654
No 297
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.65 E-value=15 Score=30.20 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=24.7
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~ 49 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 345667778899999999999999998664
No 298
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.53 E-value=15 Score=35.73 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=21.1
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-|..|-|-|-+|||||+++.+.-..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3678889999999999999988653
No 299
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=44.50 E-value=13 Score=36.33 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.1
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|.-|.|.|.+|+|||++-+...
T Consensus 47 p~~ILLiGppG~GKT~lAraLA 68 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLA 68 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999876553
No 300
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.47 E-value=13 Score=33.49 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=24.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-++|-|-|-+|+|||++|+-..-.
T Consensus 26 sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 445556689999999999999999876543
No 301
>PLN02200 adenylate kinase family protein
Probab=44.33 E-value=17 Score=32.01 Aligned_cols=22 Identities=14% Similarity=-0.133 Sum_probs=18.9
Q ss_pred ccCCceEeecCCcccchhhHhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLK 230 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~ 230 (245)
.+.|-.|.+-|.+|+|||++-+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~ 61 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCE 61 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 6667788999999999999854
No 302
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=44.29 E-value=15 Score=32.98 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=23.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566677899999999999999998764
No 303
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.17 E-value=15 Score=32.33 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=24.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-+-.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34566678999999999999999998754
No 304
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.12 E-value=24 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.3
Q ss_pred eEEEEcCCChhHHHHHHHHHH
Q 025953 139 KLLVVCQEGLRYIRFCRFHRA 159 (245)
Q Consensus 139 ~VVVyC~~G~RS~~aa~~L~~ 159 (245)
+|++.|.+|+.|..++..+++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~ 22 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNK 22 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999998888876664
No 305
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=44.09 E-value=14 Score=31.80 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=25.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-++.-+.+-|-|-.|+|||++|+-.-..
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 34566777899999999999999999876543
No 306
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.06 E-value=14 Score=32.92 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-+|+|||++|+-..-
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345566778999999999999999987643
No 307
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=44.02 E-value=15 Score=33.90 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=23.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+|+.|-|-.|+|||+.|+-...
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 34566789999999999999999986543
No 308
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.98 E-value=15 Score=32.47 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.1
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++|+-+.
T Consensus 35 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 35 INMMVHEKQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34556677899999999999999998764
No 309
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.93 E-value=15 Score=32.06 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=25.6
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.+-|-|-+|+|||++++-+.-
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G 53 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNR 53 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456677788999999999999999998753
No 310
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=43.92 E-value=15 Score=32.83 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=22.8
Q ss_pred cccCCceEeecCCcccchhhHhhhhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
-...=+-|.|-|-+|+|||++|+-.-..-+
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344467889999999999999986644333
No 311
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=43.82 E-value=13 Score=30.65 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=19.1
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-+++.+.|-+|+|||.++..+-
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~ 53 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLA 53 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4799999999999999987653
No 312
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.75 E-value=15 Score=31.57 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=26.3
Q ss_pred cccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 202 VVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...-.|-+..-+.+-|-|-.|+|||++|+-..-
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334556677788999999999999999987643
No 313
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=43.72 E-value=15 Score=31.53 Aligned_cols=31 Identities=10% Similarity=0.107 Sum_probs=25.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-.|+|||++|+-.-..
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 3556667789999999999999999976543
No 314
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.71 E-value=13 Score=35.36 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.0
Q ss_pred cccCCceEeecCCcccchhhHhhh-hhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKN-CQHAS 236 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 236 (245)
++.--..|-|||-.|+|||++-|. |||-|
T Consensus 173 lIt~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 455567899999999999999875 56654
No 315
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=43.68 E-value=13 Score=33.16 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=17.3
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
=|.|-|-|||||++++|-.-.
T Consensus 33 ~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 367889999999999986544
No 316
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=43.61 E-value=15 Score=31.89 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=23.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 27 NLSINKGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 4556677899999999999999998654
No 317
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.53 E-value=15 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=25.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-.|+|||++|+-+.-
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 355677788999999999999999998753
No 318
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=43.49 E-value=16 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4556677899999999999999988654
No 319
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=43.41 E-value=24 Score=32.71 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=23.1
Q ss_pred cCCceEeecCCcccchhhHhhhhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
.-+..|.+-|-+|+|||+.+.+.-+.-.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578899999999999999998866543
No 320
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.38 E-value=15 Score=32.78 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=24.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++++-..-
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45666778999999999999999987643
No 321
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=43.31 E-value=15 Score=35.76 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.7
Q ss_pred ccCCceEeecCCcccchhhHh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFL 229 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~ 229 (245)
..+|+=+-|||.+|+|||-+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLM 131 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLM 131 (467)
T ss_pred CCCCceEEEecccCcchhHHH
Confidence 667999999999999999764
No 322
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=43.13 E-value=14 Score=35.83 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.2
Q ss_pred ceEeecCCcccchhhHhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-+.|+|-+|+|||.++....|.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~ 164 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNY 164 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999877664
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=43.12 E-value=17 Score=32.00 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=27.0
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhhhhhhhhcc
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAKGE 242 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
|-+..-+|+-|-|-.|.||++|||-..-..+-.+|+
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~ 58 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCce
Confidence 345556899999999999999999776555544443
No 324
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.10 E-value=14 Score=33.16 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=24.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.+-|-|-.|+|||++|+-.--
T Consensus 29 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3345666778999999999999999987643
No 325
>PRK10536 hypothetical protein; Provisional
Probab=43.09 E-value=15 Score=33.45 Aligned_cols=22 Identities=5% Similarity=-0.132 Sum_probs=18.5
Q ss_pred CCceEeecCCcccchhhHhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-.++|.+.|-+|+|||-+.-.+
T Consensus 73 ~~~lV~i~G~aGTGKT~La~a~ 94 (262)
T PRK10536 73 SKQLIFATGEAGCGKTWISAAK 94 (262)
T ss_pred cCCeEEEECCCCCCHHHHHHHH
Confidence 3579999999999999886544
No 326
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=43.00 E-value=14 Score=35.07 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=24.8
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.|-+..-+++.|-|-.|+|||++|+-+-.-.
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455667899999999999999998765443
No 327
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.93 E-value=16 Score=31.83 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455667899999999999999998763
No 328
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=42.75 E-value=14 Score=33.39 Aligned_cols=31 Identities=6% Similarity=-0.048 Sum_probs=25.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+..-
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666789999999999999999877543
No 329
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.71 E-value=16 Score=31.84 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=23.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4456667899999999999999998775
No 330
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.50 E-value=15 Score=32.70 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.9
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.+-|-|-+|+|||++|+-.--
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3345666778999999999999999987643
No 331
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.42 E-value=30 Score=26.90 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=17.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHH
Q 025953 138 SKLLVVCQEGLRYIRFCRFHRA 159 (245)
Q Consensus 138 ~~VVVyC~~G~RS~~aa~~L~~ 159 (245)
++|++.|.+|..|..++..+++
T Consensus 2 kkILlvCg~G~STSlla~k~k~ 23 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTE 23 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHH
Confidence 3699999999988888777654
No 332
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=42.34 E-value=16 Score=31.22 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=25.9
Q ss_pred cccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 202 VVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...-.|-+..-+++-|-|-.|+|||++++-.--
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 334445667788999999999999999987643
No 333
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.25 E-value=17 Score=31.71 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=25.8
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+.+-|-|-.|+|||++|+-+.-.
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34556667789999999999999999987543
No 334
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.06 E-value=16 Score=32.68 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=23.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+++-|-|-+|+|||++++-.-
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLID 54 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34556677899999999999999998654
No 335
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=42.02 E-value=16 Score=32.45 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=25.1
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...|-++.-+++-|-|-.|+|||++|+-+-.
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3455666778999999999999999987643
No 336
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=41.98 E-value=16 Score=34.56 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=15.8
Q ss_pred eEeecCCcccchhhHhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~ 232 (245)
-+.++|-||+|||-..+..
T Consensus 44 n~~iyG~~GTGKT~~~~~v 62 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFV 62 (366)
T ss_pred cEEEECCCCCCHhHHHHHH
Confidence 3889999999999877643
No 337
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=41.96 E-value=17 Score=32.01 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-+.
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34566677899999999999999998764
No 338
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.95 E-value=15 Score=32.66 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-+--
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34556678999999999999999987643
No 339
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=41.65 E-value=16 Score=34.21 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=23.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++.|-|-+|+|||++|+-.-
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~ia 51 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVA 51 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 4555667899999999999999998654
No 340
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=41.56 E-value=18 Score=33.81 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.5
Q ss_pred CceEeecCCcccchhhHhhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
+-.|.+.|..|+|||++++......
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999998765443
No 341
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=41.43 E-value=16 Score=32.53 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.5
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-....
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666788999999999999999876543
No 342
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.12 E-value=17 Score=32.46 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=17.3
Q ss_pred EeecCCcccchhhHhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ 234 (245)
+.|+|-.|+|||.+++.+-+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999987644
No 343
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.08 E-value=18 Score=31.46 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=25.5
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-.|-+..-+.+-|-|-.|+|||++|+-+.
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (249)
T PRK14253 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLN 50 (249)
T ss_pred ecceEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445667778899999999999999998874
No 344
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=41.06 E-value=16 Score=32.54 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=24.9
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-.|+|||++|+-...-
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456667788999999999999999876543
No 345
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=41.06 E-value=19 Score=32.32 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.1
Q ss_pred CCceEeecCCcccchhhHhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|..+-|+|-.|+|||++.+.+-+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 455677799999999999887643
No 346
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=41.04 E-value=18 Score=36.62 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=29.1
Q ss_pred cccccccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 200 VPVVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+=+.+.++-++.=+-+-+.|-.|+|||++++-.-+-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445566777788889999999999999999876543
No 347
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=40.88 E-value=32 Score=24.90 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=14.9
Q ss_pred eEEEEcCCChhHHHHH-HHHHH
Q 025953 139 KLLVVCQEGLRYIRFC-RFHRA 159 (245)
Q Consensus 139 ~VVVyC~~G~RS~~aa-~~L~~ 159 (245)
+|++.|.+|..+..++ ..+++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~ 22 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKK 22 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHHHHHH
Confidence 5899999997666555 55543
No 348
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.87 E-value=19 Score=34.92 Aligned_cols=26 Identities=4% Similarity=-0.132 Sum_probs=21.9
Q ss_pred CCceEeecCCcccchhhHhhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
-|..|-+-|.+|||||+.+.+.-+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998876543
No 349
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.76 E-value=17 Score=32.62 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=23.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|-+|+|||++|+-..-
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44556668999999999999999987643
No 350
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.76 E-value=18 Score=31.81 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=22.4
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+.+-|-|-.|+|||++|+-..
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445566789999999999999998764
No 351
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.69 E-value=17 Score=32.36 Aligned_cols=30 Identities=3% Similarity=0.044 Sum_probs=24.4
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-.|-+..-+.+-|-|-+|+|||++++-..
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 51 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFN 51 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334566677899999999999999998664
No 352
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=40.69 E-value=15 Score=34.82 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=17.4
Q ss_pred ceEeecCCcccchhhHhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (245)
-.|.+-|-||+|||++|+-+
T Consensus 150 GlilI~G~TGSGKTT~l~al 169 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASI 169 (372)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35788999999999999876
No 353
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.65 E-value=21 Score=34.71 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=20.1
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+..|.+-|.+|||||+++.+.-+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457888999999999999887653
No 354
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.63 E-value=18 Score=31.95 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|.+..-+++-|-|-.|+|||++|+-+.
T Consensus 29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34556677899999999999999998764
No 355
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=40.57 E-value=18 Score=33.56 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.5
Q ss_pred CceEeecCCcccchhhHhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.+.|.|-|+.|+|||++.+....
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999887543
No 356
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.56 E-value=18 Score=31.56 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
.|..+--+-|.|+|-.|+||+++|+-.
T Consensus 31 slsV~aGECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 31 SLSVNAGECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred eEEecCccEEEeeCCCCCcHHHHHHHH
Confidence 445566788999999999999999753
No 357
>PRK04195 replication factor C large subunit; Provisional
Probab=40.25 E-value=19 Score=34.99 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=18.9
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
+.-+.|+|-.|+|||++.+.+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala 60 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALA 60 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999987653
No 358
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=39.99 E-value=17 Score=36.07 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.1
Q ss_pred ccccCCceEeecCCcccchhhHhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKN 231 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (245)
+-+.--++|.|-|-+|.|||++|+.
T Consensus 27 l~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 27 KELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred eeecCCCEEEEECCCCCCHHHHHhc
Confidence 3455568999999999999999993
No 359
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=39.97 E-value=18 Score=31.82 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.6
Q ss_pred CCceEeecCCcccchhhHhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
.-+++.|-|-+|+|||.++..+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~ 50 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREY 50 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3468899999999999988765
No 360
>PHA02244 ATPase-like protein
Probab=39.97 E-value=17 Score=34.76 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=18.1
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-|-|.|-+|||||.+.....+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999998776544
No 361
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=39.63 E-value=19 Score=31.68 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=23.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-.|-+..-+.+-|-|-+|+|||++++-.
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l 67 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAF 67 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3455667789999999999999999854
No 362
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=39.58 E-value=18 Score=32.79 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=23.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++|+-+-
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 34566677899999999999999998654
No 363
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.57 E-value=19 Score=32.06 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.8
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+.+-|-|-+|+|||++|+-..
T Consensus 41 ~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 41 LKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455567899999999999999998765
No 364
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=39.53 E-value=22 Score=31.79 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=20.4
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-++-+.|+|-+|||||.++--.-|.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~ 128 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE 128 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH
Confidence 5788999999999999987655443
No 365
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=39.29 E-value=18 Score=34.88 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=21.3
Q ss_pred CceEeecCCcccchhhHhhhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHASQ 237 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
...+-|+|-+|.|||.+|....|...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~ 138 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEAL 138 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999988776553
No 366
>PRK12289 GTPase RsgA; Reviewed
Probab=39.13 E-value=16 Score=34.41 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=21.2
Q ss_pred eEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
-+.+-|-+||||+++||..--...+..|
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 3678899999999999987644444434
No 367
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=39.02 E-value=19 Score=32.01 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=25.4
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+.+-|-|-.|+|||++|+-..-.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33456667789999999999999999876543
No 368
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=38.99 E-value=17 Score=30.43 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.1
Q ss_pred eEeecCCcccchhhHhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~ 233 (245)
-|-+-|.++|||++++|..-
T Consensus 119 ~~~~vG~pnvGKSslin~l~ 138 (172)
T cd04178 119 TVGVVGFPNVGKSSLINSLK 138 (172)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 47788999999999998754
No 369
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=38.89 E-value=35 Score=25.77 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=16.8
Q ss_pred eEEEEcCCChhHHHHHHHHHH
Q 025953 139 KLLVVCQEGLRYIRFCRFHRA 159 (245)
Q Consensus 139 ~VVVyC~~G~RS~~aa~~L~~ 159 (245)
+|++.|.+|..|..++..+++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~ 21 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKK 21 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHH
Confidence 489999999988877776654
No 370
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=38.84 E-value=22 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=19.8
Q ss_pred ccCCceEeecCCcccchhhHhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
...|.+|.+-|.+|+|||++++..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l 59 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSL 59 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 455788999999999999999543
No 371
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.81 E-value=22 Score=33.27 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=18.2
Q ss_pred CCceEeecCCcccchhhHhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
+|..+.++|-.|+|||++.....
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHH
Confidence 45567899999999999875443
No 372
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=38.71 E-value=24 Score=35.85 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=38.9
Q ss_pred cccccccccccccccccc---cccccccccccc-------ccccCC--ceEeecCCcccchhhHhhh
Q 025953 177 CTWNCAYLCISIHHFLPR---ASREVVPVVPCE-------LVLKIP--DFVDLNPCVTVGEIEFLKN 231 (245)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~ 231 (245)
..|+....+|..++|.+. .-.+++-++|+. +-+++| +=+-+-|.+|+|||+++.-
T Consensus 414 ~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRv 480 (659)
T KOG0060|consen 414 AEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRV 480 (659)
T ss_pred hhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHH
Confidence 468999999999999666 444555556662 333333 3466789999999999864
No 373
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=38.56 E-value=17 Score=32.92 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=14.3
Q ss_pred EeecCCcccchhhHhh
Q 025953 215 VDLNPCVTVGEIEFLK 230 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~ 230 (245)
|.|.|-+|+|||.+-.
T Consensus 61 vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 61 MSFTGNPGTGKTTVAL 76 (284)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 7899999999999873
No 374
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=38.55 E-value=18 Score=33.85 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=24.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+++.|-|-.|+|||++|+-..-.
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 445566789999999999999999876443
No 375
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=38.41 E-value=20 Score=34.38 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=23.6
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.++..-....|.|-|..|+|||++++.....
T Consensus 212 ~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 212 TEVRPFFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred HHHhhCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555677999999999999998876543
No 376
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=38.33 E-value=18 Score=38.86 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=22.5
Q ss_pred cccCCceEeecCCcccchhhHhhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
++.-.+++.|.|..|+|||++|+.+..+
T Consensus 358 il~s~~v~vv~G~AGTGKTT~l~~~~~~ 385 (988)
T PRK13889 358 VTDGRDLGVVVGYAGTGKSAMLGVAREA 385 (988)
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4455678899999999999999866544
No 377
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=38.26 E-value=30 Score=30.19 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=29.4
Q ss_pred ccccccccccC--CceEeecCCcccchhhHhhhhhhhhhhhh
Q 025953 201 PVVPCELVLKI--PDFVDLNPCVTVGEIEFLKNCQHASQMAK 240 (245)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (245)
.++|.++.+.. .+++.|.|..+.|||.+++..--..-||.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~ 58 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ 58 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH
Confidence 35566666544 67999999999999999987665554543
No 378
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.25 E-value=21 Score=31.47 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=25.3
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|.+..-+.+-|-|-.|+|||++|+-+--
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 55 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR 55 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3446777889999999999999999986643
No 379
>PLN03025 replication factor C subunit; Provisional
Probab=38.16 E-value=20 Score=32.79 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=17.5
Q ss_pred EeecCCcccchhhHhhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+.|+|-.|+|||++...+.+.
T Consensus 37 lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999998876544
No 380
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.08 E-value=20 Score=31.67 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=23.5
Q ss_pred ccccccCCceEeecCCcccchhhHhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-.|-+..-+.+-|-|-+|+|||++++-.
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 54 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSL 54 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3456677789999999999999999865
No 381
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=37.91 E-value=18 Score=35.10 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.4
Q ss_pred EeecCCcccchhhHhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ 234 (245)
|.+-|+++||||+++|..-.
T Consensus 218 V~ivG~~nvGKSSLln~L~~ 237 (449)
T PRK05291 218 VVIAGRPNVGKSSLLNALLG 237 (449)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 77889999999999997643
No 382
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=37.90 E-value=18 Score=33.52 Aligned_cols=32 Identities=6% Similarity=0.096 Sum_probs=25.5
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+++-|-|-.|+|||++|+-+.-.
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33456667789999999999999999977543
No 383
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.73 E-value=20 Score=32.23 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=23.6
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|.|||++++-+-
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4566677899999999999999998764
No 384
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.71 E-value=20 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~ 54 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFN 54 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566677899999999999999998653
No 385
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=37.65 E-value=19 Score=35.38 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=17.7
Q ss_pred ceEeecCCcccchhhHhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (245)
-+|.+-|-||+|||++|+.+
T Consensus 243 GlilitGptGSGKTTtL~a~ 262 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAA 262 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 47899999999999999854
No 386
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=37.63 E-value=21 Score=32.29 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=24.2
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-.|.+..-+.+-|-|-.|+|||++|+-..
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344566677899999999999999998654
No 387
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=37.63 E-value=21 Score=31.67 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=22.5
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+.+-|-|-.|+|||++++-..
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 455567899999999999999998763
No 388
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=37.52 E-value=20 Score=33.93 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=23.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-.-
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~Ia 61 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIA 61 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 4455667899999999999999998654
No 389
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=37.47 E-value=21 Score=33.63 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=24.5
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+++-|-|-+|+|||++|+-.--.
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3445566789999999999999999876433
No 390
>PRK05595 replicative DNA helicase; Provisional
Probab=37.39 E-value=20 Score=34.48 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.8
Q ss_pred CceEeecCCcccchhhHhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-++|.+-|-+|+|||.|.-++-+
T Consensus 201 g~liviaarpg~GKT~~al~ia~ 223 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAE 223 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHH
Confidence 47899999999999999877654
No 391
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=37.14 E-value=18 Score=33.85 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.2
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
=|.+=|+++|||++++|..-..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3667799999999999987654
No 392
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.04 E-value=22 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=23.3
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
|-+..-+.+-|-|-.|+|||++|+-...
T Consensus 60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 60 ADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556678999999999999999987754
No 393
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.75 E-value=20 Score=32.06 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.5
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
|-+..-+.+-|-|-+|+|||++++-..-.
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45556789999999999999999876543
No 394
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.74 E-value=20 Score=32.94 Aligned_cols=29 Identities=3% Similarity=-0.006 Sum_probs=23.5
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|-+|+|||++++-...
T Consensus 46 sl~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34555678999999999999999987654
No 395
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=36.69 E-value=21 Score=34.89 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=25.3
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+++-|-|-+|+|||++|+-..-
T Consensus 19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445677788999999999999999987643
No 396
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=36.65 E-value=22 Score=33.32 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++.|-|-+|+|||++|+-.--
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 345556678999999999999999986543
No 397
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=36.60 E-value=21 Score=32.07 Aligned_cols=19 Identities=5% Similarity=-0.012 Sum_probs=15.9
Q ss_pred eEeecCCcccchhhHhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~ 232 (245)
.+.++|-+|+|||.+....
T Consensus 38 ~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3679999999999988654
No 398
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=36.38 E-value=20 Score=34.81 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=24.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+++-|-|-+|+|||++|+-..-.
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566789999999999999999876543
No 399
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=36.36 E-value=23 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=23.2
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
|-+.--+|+.|=|-+|.|||+++|-.-.-
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44555679999999999999999865443
No 400
>PRK06851 hypothetical protein; Provisional
Probab=36.26 E-value=21 Score=33.95 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=19.0
Q ss_pred CCceEeecCCcccchhhHhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
....+.|.|..|+|||++++..
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i 50 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKI 50 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999999974
No 401
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=36.17 E-value=38 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=26.2
Q ss_pred hccCCCcccHHHHHHHHhCC-CcEEEecCChhHH
Q 025953 44 IRADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQY 76 (245)
Q Consensus 44 ~~~~~~~Is~eeL~~ll~~~-~~vLIDVR~~~Ey 76 (245)
.......|+.+++.+++..+ ++.++|..+.++-
T Consensus 13 DT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 13 DTETSSYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred cCCCceeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 34556789999999999766 6889999986653
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=36.16 E-value=33 Score=33.31 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=19.8
Q ss_pred CCceEeecCCcccchhhHhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|..|.+-|.+|||||++.-+.-+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467788899999999998877654
No 403
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=36.01 E-value=24 Score=30.11 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-.|.+..-+.+-|-|-.|.|||++++-.
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l 51 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLI 51 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3556667789999999999999998754
No 404
>PRK05973 replicative DNA helicase; Provisional
Probab=36.00 E-value=20 Score=31.95 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=17.5
Q ss_pred CCceEeecCCcccchhhHhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKN 231 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ 231 (245)
.=+.+.|.|-+|+|||.|--+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalq 83 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLE 83 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHH
Confidence 346889999999999998654
No 405
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=35.87 E-value=23 Score=33.35 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=23.0
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-.|+|||++|+-.-
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~ia 52 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIA 52 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4455567899999999999999998653
No 406
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.84 E-value=23 Score=31.71 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-..
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4556667899999999999999998764
No 407
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=35.77 E-value=21 Score=34.86 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.9
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|.-|.|.|.+|||||++-+...
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LA 71 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLA 71 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999876543
No 408
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=35.68 E-value=21 Score=34.67 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=23.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++-|-|-+|+|||++|+-+-.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 345555667889999999999999997643
No 409
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=35.63 E-value=23 Score=32.31 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=24.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+.--++|-|-|-+|.|||++++-+--
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 345666778999999999999999987653
No 410
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=35.50 E-value=20 Score=34.73 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=16.7
Q ss_pred EeecCCcccchhhHhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~ 233 (245)
|.|-|.+|||||+++|..-
T Consensus 206 VvIvG~~nvGKSSLiN~L~ 224 (442)
T TIGR00450 206 LAIVGSPNVGKSSLLNALL 224 (442)
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 6788999999999999764
No 411
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.49 E-value=25 Score=31.85 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.2
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|.+.--+||.|-|-.|+|||++|.-..
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~ln 51 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLN 51 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHh
Confidence 345567899999999999999997554
No 412
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.32 E-value=22 Score=31.77 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=24.1
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++-|-|-+|.|||++|+-.-.
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G 55 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 345566678999999999999999986643
No 413
>PLN02796 D-glycerate 3-kinase
Probab=35.32 E-value=27 Score=33.03 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=20.2
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|=+|-|.|.+|+|||++++.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3557899999999999998766544
No 414
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.31 E-value=24 Score=31.72 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.5
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455567899999999999999998764
No 415
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.28 E-value=24 Score=31.28 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=23.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556667889999999999999998763
No 416
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.28 E-value=26 Score=34.28 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=19.7
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
..+..+.|-+|+|||++|.-...+
T Consensus 27 ~g~~~i~G~NG~GKStll~aI~~~ 50 (562)
T PHA02562 27 VKKTLITGKNGAGKSTMLEALTFA 50 (562)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478899999999999998765544
No 417
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=35.21 E-value=22 Score=34.26 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=17.9
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
=|-|.|-||||||++.+.+..
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 577899999999999887754
No 418
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=35.17 E-value=25 Score=31.72 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=25.9
Q ss_pred ccccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 203 VPCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
..-.|-+..-+.|-|-|-+|.|||++|+-..-
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34456777889999999999999999986543
No 419
>PRK13796 GTPase YqeH; Provisional
Probab=35.07 E-value=21 Score=33.61 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.7
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-|.+=|+++|||++++|..-+
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHh
Confidence 366789999999999998753
No 420
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=34.99 E-value=22 Score=29.09 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.6
Q ss_pred eEeecCCcccchhhHhhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-+.+-|.++|||+++++.....
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4668899999999998876543
No 421
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.86 E-value=25 Score=31.38 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+++-|-|-+|+|||++|+-..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 25 SLSIPEGSKTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4556667899999999999999998764
No 422
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=34.86 E-value=20 Score=36.46 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=19.4
Q ss_pred ccCCceEeecCCcccchhhHhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
+...+++.++|.+|+|||.++...
T Consensus 170 l~~~~~~lI~GpPGTGKT~t~~~i 193 (637)
T TIGR00376 170 LSSKDLFLIHGPPGTGKTRTLVEL 193 (637)
T ss_pred hcCCCeEEEEcCCCCCHHHHHHHH
Confidence 344478999999999999988654
No 423
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=34.81 E-value=24 Score=33.03 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++-|-|-+|+|||++|+-.--
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345566678999999999999999986543
No 424
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.76 E-value=23 Score=32.25 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=27.2
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhhhhhhhc
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHASQMAKG 241 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
.-.|-++.-+.+-|-|-.|+|||++|+-.-.-..-.+|
T Consensus 23 ~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G 60 (293)
T COG1131 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60 (293)
T ss_pred ceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 34455666788999999999999999876544333333
No 425
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=34.72 E-value=26 Score=31.00 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=19.8
Q ss_pred cCCceEeecCCcccchhhHhhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
...-...+.|-.|+||||.++..-+
T Consensus 30 ~~~~~~~~~GpagtGKtetik~La~ 54 (231)
T PF12774_consen 30 SLNLGGALSGPAGTGKTETIKDLAR 54 (231)
T ss_dssp CTTTEEEEESSTTSSHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCCCchhHHHHHHH
Confidence 3445667899999999999987644
No 426
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=34.71 E-value=22 Score=33.19 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=16.6
Q ss_pred eEeecCCcccchhhHhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~ 232 (245)
.|.+-|-+||||++++|..
T Consensus 40 rIllvGktGVGKSSliNsI 58 (313)
T TIGR00991 40 TILVMGKGGVGKSSTVNSI 58 (313)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778999999999999873
No 427
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=34.57 E-value=25 Score=36.98 Aligned_cols=20 Identities=20% Similarity=-0.032 Sum_probs=16.9
Q ss_pred eEeecCCcccchhhHhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~ 233 (245)
-+-+.|-+|||||++.+...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La 617 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALA 617 (852)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999988663
No 428
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.32 E-value=26 Score=30.98 Aligned_cols=29 Identities=7% Similarity=0.002 Sum_probs=23.9
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++++-.-
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566677899999999999999998764
No 429
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=34.08 E-value=22 Score=33.82 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.3
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-+++.|-|-+|+|||.|.-++-
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a 216 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIA 216 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHH
Confidence 4789999999999999987763
No 430
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=34.04 E-value=23 Score=31.78 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=16.2
Q ss_pred EeecCCcccchhhHhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+-|.++|||++++|...
T Consensus 121 ~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 121 AMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6677999999999998753
No 431
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=19 Score=37.69 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=12.8
Q ss_pred ecCCcccchhhHhhhh
Q 025953 217 LNPCVTVGEIEFLKNC 232 (245)
Q Consensus 217 ~~~~~~~~~~~~~~~~ 232 (245)
+-|-|||||||+-+..
T Consensus 526 F~GPTGVGKTELAkaL 541 (786)
T COG0542 526 FLGPTGVGKTELAKAL 541 (786)
T ss_pred eeCCCcccHHHHHHHH
Confidence 4588999999987644
No 432
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=33.82 E-value=25 Score=33.64 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=23.4
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|-.|+|||++|+-...
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 34556678999999999999999986543
No 433
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=33.74 E-value=25 Score=33.90 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=17.9
Q ss_pred ceEeecCCcccchhhHhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-|.|.|-+|||||++.+....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999876643
No 434
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=33.56 E-value=24 Score=34.31 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=25.1
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+++-|-|-+|+|||++|+-.-..
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666789999999999999999877544
No 435
>COG1084 Predicted GTPase [General function prediction only]
Probab=33.54 E-value=23 Score=33.45 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=18.2
Q ss_pred EeecCCcccchhhHhhhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (245)
|.+-|+..|||++|+++..-|
T Consensus 171 ivVaG~PNVGKSSlv~~lT~A 191 (346)
T COG1084 171 IVVAGYPNVGKSSLVRKLTTA 191 (346)
T ss_pred EEEecCCCCcHHHHHHHHhcC
Confidence 678899999999999987655
No 436
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=33.48 E-value=26 Score=35.25 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.|-|-|-+|+|||++|+.+-
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriia 50 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILN 50 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 34566677899999999999999998764
No 437
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=33.36 E-value=56 Score=25.28 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHH
Q 025953 138 SKLLVVCQEGLRYIRFCRFHRA 159 (245)
Q Consensus 138 ~~VVVyC~~G~RS~~aa~~L~~ 159 (245)
++|++.|.+|..|...+..++.
T Consensus 4 kkIllvC~~G~sTSll~~km~~ 25 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRA 25 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 5799999999999988855543
No 438
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=33.35 E-value=26 Score=34.05 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=23.7
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+++-|-|-.|+|||++|+-.-
T Consensus 281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred eeeEEcCCcEEEEeCCCCCCHHHHHHHHh
Confidence 35566667789999999999999998764
No 439
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.34 E-value=27 Score=31.13 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=25.5
Q ss_pred cccccccccCCceEeecCCcccchhhHhhhhh
Q 025953 202 VVPCELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
...-.|-+..-+.+-|-|-+|.|||++++-..
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLID 54 (277)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 33445666778899999999999999998653
No 440
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=33.34 E-value=22 Score=29.85 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=14.6
Q ss_pred eEeecCCcccchhhHhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~ 232 (245)
-+-+.|-||+|||.+|...
T Consensus 40 h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp SEEEE--TTSSHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHH
Confidence 5778899999999999864
No 441
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=33.33 E-value=26 Score=33.96 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=24.4
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++-|-|-+|+|||++|+-...
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 345666788999999999999999986643
No 442
>PRK06851 hypothetical protein; Provisional
Probab=32.96 E-value=32 Score=32.71 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.5
Q ss_pred CceEeecCCcccchhhHhhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
...+.|.|-+|+|||++++..-.+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4668899999999999999865443
No 443
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.88 E-value=39 Score=31.87 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCC
Q 025953 138 SKLLVVCQEGLRYIRFCRFHRAARC 162 (245)
Q Consensus 138 ~~VVVyC~~G~RS~~aa~~L~~~G~ 162 (245)
.+|||--.+|..|..+|.+|+..||
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~ 30 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGY 30 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCC
Confidence 5677777799999999999999974
No 444
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=32.87 E-value=2.9e+02 Score=22.92 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=17.8
Q ss_pred CCCCeEEEEcCCC-hhHHHH-HHHHHHcC
Q 025953 135 SPESKLLVVCQEG-LRYIRF-CRFHRAAR 161 (245)
Q Consensus 135 ~~d~~VVVyC~~G-~RS~~a-a~~L~~~G 161 (245)
.++.+|+|.|..| .||..+ +..|...|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4588999999955 566653 44454443
No 445
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.84 E-value=28 Score=37.43 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=20.9
Q ss_pred cccCCceEeecCCcccchhhHhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
++....++.|.|-||+|||++|.-.-
T Consensus 26 ~l~~~~l~~I~G~tGaGKStildai~ 51 (1047)
T PRK10246 26 PFASNGLFAITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 35556788999999999999987544
No 446
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=32.78 E-value=24 Score=35.25 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=18.3
Q ss_pred ceEeecCCcccchhhHhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|.+-|-||+|||+.|+.+-.
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~ 338 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALN 338 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999987643
No 447
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=32.69 E-value=26 Score=31.96 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=24.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.|-+..-+.+-|-|-+|.|||++++-.-...
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455556789999999999999998775443
No 448
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=32.59 E-value=26 Score=33.77 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=23.9
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|-.|+|||++|+-+--
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566778999999999999999987643
No 449
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=32.49 E-value=25 Score=34.73 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=23.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.-.
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345556667889999999999999987654
No 450
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.49 E-value=29 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.-
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34566778899999999999999998763
No 451
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=32.48 E-value=25 Score=34.54 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=19.0
Q ss_pred CCceEeecCCcccchhhHhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
..+.|.|+|-+|+|||.+.+..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~l 214 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRL 214 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHH
Confidence 5689999999999999988653
No 452
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=32.45 E-value=29 Score=32.01 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=24.0
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+.+-|-|-.|+|||++++-.-.
T Consensus 26 vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHc
Confidence 345566678999999999999999986543
No 453
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=32.32 E-value=25 Score=33.38 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=19.3
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-+++.|-|-+|+|||.|.-++-
T Consensus 194 g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999987764
No 454
>PRK05439 pantothenate kinase; Provisional
Probab=32.32 E-value=35 Score=31.71 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCceEeecCCcccchhhHhhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
.|=.|-+.|.+|||||++-+..+...
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567899999999999988776543
No 455
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=32.23 E-value=32 Score=33.70 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=20.4
Q ss_pred CCceEeecCCcccchhhHhhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-|=+|-|.|..|+|||++.+.....
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3557889999999999998877544
No 456
>PRK01889 GTPase RsgA; Reviewed
Probab=32.19 E-value=24 Score=33.11 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=23.3
Q ss_pred CceEeecCCcccchhhHhhhhhhhhhhhhcc
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHASQMAKGE 242 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
-+.+.+-|-+|||||++++..-.......|+
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~ 225 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGA 225 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceee
Confidence 3688999999999999999765444444443
No 457
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=32.15 E-value=30 Score=39.03 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.8
Q ss_pred CceEeecCCcccchhhHhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|+.|.|+.|+|||++++....+
T Consensus 852 dr~~~IqG~AGTGKTT~l~~i~~~ 875 (1623)
T PRK14712 852 DRFTVVQGYAGVGKTTQFRAVMSA 875 (1623)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHH
Confidence 359999999999999998775443
No 458
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.13 E-value=62 Score=26.86 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCC---hhHHHHHHHHHHcCCCcee
Q 025953 135 SPESKLLVVCQEG---LRYIRFCRFHRAARCWKSW 166 (245)
Q Consensus 135 ~~d~~VVVyC~~G---~RS~~aa~~L~~~G~~~~~ 166 (245)
++..+|+|.|..| ..+..+++.|.+.|+.-..
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 5678999999954 5678899999999986444
No 459
>PRK13764 ATPase; Provisional
Probab=32.03 E-value=25 Score=35.65 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=18.9
Q ss_pred CceEeecCCcccchhhHhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-|.+-|-||+|||++++.+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~ 278 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALA 278 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999997754
No 460
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=32.00 E-value=26 Score=34.02 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=25.6
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+++-|-|-+|+|||++|+.+...
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 34556667789999999999999999876543
No 461
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.82 E-value=29 Score=32.08 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=22.3
Q ss_pred cccccCCceEeecCCcccchhhHhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.|-+..-+.|-|-|-+|+|||++|+-.-
T Consensus 102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445556899999999999999998653
No 462
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=31.76 E-value=84 Score=28.29 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=22.4
Q ss_pred HHHHhhhcCCCCCeEEEEcCCC-hhHH-HHHHHHHHcCC
Q 025953 126 FVQSVKSQFSPESKLLVVCQEG-LRYI-RFCRFHRAARC 162 (245)
Q Consensus 126 f~~~l~~~l~~d~~VVVyC~~G-~RS~-~aa~~L~~~G~ 162 (245)
|++.+...+.++..|+|.|..| .||. .++..|...|+
T Consensus 159 ~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 159 WLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3333333345678999999954 4544 45566666664
No 463
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=31.69 E-value=26 Score=31.62 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=16.5
Q ss_pred EeecCCcccchhhHhhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~ 233 (245)
|.+-|.++|||++++|...
T Consensus 124 ~~~~G~pnvGKSsliN~l~ 142 (287)
T PRK09563 124 AMIIGIPNVGKSTLINRLA 142 (287)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6778999999999998764
No 464
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=31.68 E-value=27 Score=34.39 Aligned_cols=32 Identities=9% Similarity=-0.025 Sum_probs=25.6
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.-.|-+..-+++-|-|-+|+|||++|+-.-..
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456677789999999999999999877543
No 465
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=31.59 E-value=28 Score=34.45 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=25.0
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.+-|-|-+|+|||++|+-.-.
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G 55 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445666678999999999999999987654
No 466
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=31.42 E-value=28 Score=35.24 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=24.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.|-|-|-+|+|||++|+..-..
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455556678889999999999999976543
No 467
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.42 E-value=72 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=16.4
Q ss_pred CeEEEEcCCChhHHHH-HH----HHHHcCC
Q 025953 138 SKLLVVCQEGLRYIRF-CR----FHRAARC 162 (245)
Q Consensus 138 ~~VVVyC~~G~RS~~a-a~----~L~~~G~ 162 (245)
.+|++.|.+|..+... +. .|.+.|+
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 3699999999854443 44 4455565
No 468
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=31.41 E-value=81 Score=23.54 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCC
Q 025953 137 ESKLLVVCQEGLRYIRFCRFHRAARCW 163 (245)
Q Consensus 137 d~~VVVyC~~G~RS~~aa~~L~~~G~~ 163 (245)
+-+|+|-|..|..+..+..+|+.+|+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~ 47 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCD 47 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCc
Confidence 458999999999999999999999873
No 469
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.38 E-value=34 Score=36.00 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=25.6
Q ss_pred ccccccccccCCceEeecCCcccchhhHhhh
Q 025953 201 PVVPCELVLKIPDFVDLNPCVTVGEIEFLKN 231 (245)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (245)
+-.||...+++.-+|-|+|.+|+|||.+..-
T Consensus 420 ~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~ 450 (953)
T KOG0736|consen 420 QKQPSGALLTLNPSVLLHGPPGSGKTTVVRA 450 (953)
T ss_pred ccCcchhccccceEEEEeCCCCCChHHHHHH
Confidence 3456667778888999999999999998764
No 470
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=31.30 E-value=29 Score=33.61 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=24.3
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
-.|-+..-+.+-|-|-+|+|||++|+-.-..
T Consensus 279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 3455666678899999999999999876543
No 471
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=31.21 E-value=30 Score=33.39 Aligned_cols=29 Identities=7% Similarity=-0.038 Sum_probs=22.1
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|-.|+|||++|+-.--
T Consensus 280 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 34445556788889999999999987643
No 472
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=31.18 E-value=27 Score=31.59 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=17.5
Q ss_pred ceEeecCCcccchhhHhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-+.+-|.+|+|||++++.+-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh
Confidence 346788999999999998764
No 473
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=31.05 E-value=18 Score=34.71 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.7
Q ss_pred CceEeecCCcccchhhHhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (245)
-+.-+|-|-||.|||+||.+.
T Consensus 273 GElTvlTGpTGsGKTTFlsEY 293 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEY 293 (514)
T ss_pred CceEEEecCCCCCceeEehHh
Confidence 366789999999999998654
No 474
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=31.02 E-value=37 Score=33.90 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=20.5
Q ss_pred ccCCceEeecCCcccchhhHhhhh
Q 025953 209 LKIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
..-|+.|.+.|+.|+|||++-+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l 389 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKF 389 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999997754
No 475
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=31.00 E-value=30 Score=33.15 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|-+|+|||++|+-+.-
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 34556678999999999999999987653
No 476
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=30.91 E-value=58 Score=23.84 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=13.7
Q ss_pred eEEEEcCCChhHHHH-HHHHH
Q 025953 139 KLLVVCQEGLRYIRF-CRFHR 158 (245)
Q Consensus 139 ~VVVyC~~G~RS~~a-a~~L~ 158 (245)
+|+++|.+|..+... ...++
T Consensus 2 kilvvCg~G~gtS~ml~~ki~ 22 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLR 22 (87)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999988765444 44444
No 477
>PLN03073 ABC transporter F family; Provisional
Probab=30.91 E-value=28 Score=35.91 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=23.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
.|-+..-+.|-|-|-+|+|||++|+-.-..
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445555678889999999999999977543
No 478
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=30.82 E-value=27 Score=34.98 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=20.3
Q ss_pred CCceEeecCCcccchhhHhhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
....+-+.|-||+|||.+++++-.
T Consensus 175 e~~h~li~G~tGsGKs~~i~~ll~ 198 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVAIRKLLR 198 (566)
T ss_pred cccceEEEcCCCCCHHHHHHHHHH
Confidence 356889999999999999988743
No 479
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=30.49 E-value=29 Score=33.69 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=24.6
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.|-+..-+++-|-|-+|+|||++|+-...
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 345666778999999999999999987654
No 480
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=30.33 E-value=33 Score=32.65 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=19.6
Q ss_pred ceEeecCCcccchhhHhhhhhhhh
Q 025953 213 DFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
..+-|.|-+|+|||++.+...+..
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999988765543
No 481
>PRK05748 replicative DNA helicase; Provisional
Probab=30.24 E-value=30 Score=33.32 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.4
Q ss_pred CCceEeecCCcccchhhHhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-++|.|-|-+|+|||.|.-+.-
T Consensus 202 ~G~livIaarpg~GKT~~al~ia 224 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIA 224 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHH
Confidence 34799999999999999977653
No 482
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=30.13 E-value=32 Score=34.82 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=25.3
Q ss_pred cccccccCCceEeecCCcccchhhHhhhhhh
Q 025953 204 PCELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.-.|-+..-+.|-|-|-+|+|||++|+..--
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455677788999999999999999987643
No 483
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=29.99 E-value=29 Score=32.51 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=17.5
Q ss_pred eEeecCCcccchhhHhhhhhh
Q 025953 214 FVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~ 234 (245)
=|-|.|-+|+|||++.+....
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHH
Confidence 378999999999999886643
No 484
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=29.99 E-value=32 Score=33.63 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=23.5
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+++-|-|-.|+|||++|+-.-
T Consensus 305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 333 (529)
T PRK15134 305 ISFTLRPGETLGLVGESGSGKSTTGLALL 333 (529)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45556667789999999999999998764
No 485
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.95 E-value=27 Score=33.91 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=14.7
Q ss_pred EeecCCcccchhhHhhhh
Q 025953 215 VDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~ 232 (245)
.+|+|-.|||||++-.-.
T Consensus 51 mIl~GPPG~GKTTlA~li 68 (436)
T COG2256 51 MILWGPPGTGKTTLARLI 68 (436)
T ss_pred eEEECCCCCCHHHHHHHH
Confidence 479999999999985543
No 486
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.85 E-value=33 Score=30.84 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=23.8
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+++-|-|-.|.|||++|+-..
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 34556667899999999999999998764
No 487
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=29.62 E-value=30 Score=33.74 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=23.7
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+.+-|-|-.|+|||++|+-+--
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44556678999999999999999987753
No 488
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=29.27 E-value=33 Score=33.48 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=21.2
Q ss_pred ccccCCceEeecCCcccchhhHhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
|-+..-+++-|-|-.|+|||++|+-.-
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 284 LEVRAGEILGLAGVVGAGRTELAETLY 310 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 344445788999999999999998653
No 489
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=29.14 E-value=29 Score=32.18 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=23.1
Q ss_pred ccccCCceEeecCCcccchhhHhhhhhhh
Q 025953 207 LVLKIPDFVDLNPCVTVGEIEFLKNCQHA 235 (245)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
+-|++.-=|-|-|.++||||++|+..-.+
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~ 180 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAA 180 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcC
Confidence 45666666778899999999999987654
No 490
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=29.06 E-value=34 Score=33.48 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=22.9
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+.--+.+-|-|-.|+|||++|+-..
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34555566788999999999999998654
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=29.02 E-value=30 Score=32.32 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=19.0
Q ss_pred cCCceEeecCCcccchhhHhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNC 232 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
+...-+.+-|-||+|||++|+-.
T Consensus 176 ~~~~~ili~G~tGsGKTTll~al 198 (340)
T TIGR03819 176 AARLAFLISGGTGSGKTTLLSAL 198 (340)
T ss_pred hCCCeEEEECCCCCCHHHHHHHH
Confidence 44567889999999999999854
No 492
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=28.99 E-value=40 Score=34.15 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.4
Q ss_pred CceEeecCCcccchhhHhhhhhhhh
Q 025953 212 PDFVDLNPCVTVGEIEFLKNCQHAS 236 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
+.-|.|.|-+|||||++.+.+-+.+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4459999999999999998875443
No 493
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.96 E-value=39 Score=35.25 Aligned_cols=39 Identities=28% Similarity=0.224 Sum_probs=30.4
Q ss_pred ccccccccccCC-ceEeecCCcccchhhHhhhhhhhhhhh
Q 025953 201 PVVPCELVLKIP-DFVDLNPCVTVGEIEFLKNCQHASQMA 239 (245)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
.++|-++.+.-. +.+.|-|-+|.|||.+|+-.--..-|+
T Consensus 310 ~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a 349 (771)
T TIGR01069 310 KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF 349 (771)
T ss_pred ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 366777777655 899999999999999999876554444
No 494
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=28.96 E-value=34 Score=31.94 Aligned_cols=29 Identities=7% Similarity=0.096 Sum_probs=23.2
Q ss_pred cccccCCceEeecCCcccchhhHhhhhhh
Q 025953 206 ELVLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.|-+..-+++-|-|..|+|||++|+-..-
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44555668999999999999999986643
No 495
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=28.93 E-value=37 Score=32.91 Aligned_cols=27 Identities=22% Similarity=0.053 Sum_probs=22.3
Q ss_pred cccCCceEeecCCcccchhhHhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-+..+.-|-|||+.|+|||-+-+..-+
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 456777999999999999998776644
No 496
>PRK08506 replicative DNA helicase; Provisional
Probab=28.83 E-value=32 Score=33.55 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=19.7
Q ss_pred CCceEeecCCcccchhhHhhhhh
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
.-++|.+-|-+|+|||.|.-++-
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia 213 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMA 213 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHH
Confidence 34789999999999999987764
No 497
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=28.78 E-value=32 Score=33.42 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=19.4
Q ss_pred cCCceEeecCCcccchhhHhhhhh
Q 025953 210 KIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
..-+++-|-|-.|+|||++|+-.-
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLY 299 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHHHHh
Confidence 334678899999999999998664
No 498
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.49 E-value=26 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=22.4
Q ss_pred CCceEeecCCcccchhhHhhhhhhhhhhhhcccC
Q 025953 211 IPDFVDLNPCVTVGEIEFLKNCQHASQMAKGEQS 244 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (245)
-+.-.-|+|-||+||||+.=..- +.-.++|.|.
T Consensus 216 ~~~~~Ll~GvTGSGKTEvYl~~i-~~~L~~Gkqv 248 (730)
T COG1198 216 GFAPFLLDGVTGSGKTEVYLEAI-AKVLAQGKQV 248 (730)
T ss_pred cccceeEeCCCCCcHHHHHHHHH-HHHHHcCCEE
Confidence 35667799999999999864331 2335666554
No 499
>CHL00176 ftsH cell division protein; Validated
Probab=28.47 E-value=39 Score=34.49 Aligned_cols=27 Identities=26% Similarity=0.059 Sum_probs=22.3
Q ss_pred cccCCceEeecCCcccchhhHhhhhhh
Q 025953 208 VLKIPDFVDLNPCVTVGEIEFLKNCQH 234 (245)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
-.++|+-|-|+|-+|+|||.+.+..-+
T Consensus 212 g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 212 GAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999887643
No 500
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=28.47 E-value=35 Score=33.61 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=23.2
Q ss_pred ccccccCCceEeecCCcccchhhHhhhhh
Q 025953 205 CELVLKIPDFVDLNPCVTVGEIEFLKNCQ 233 (245)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (245)
-.|-+..-+.+-|-|-.|+|||++|+-.-
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~ 369 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMIT 369 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 34555666788999999999999998664
Done!