BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025954
         (245 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
          Length = 108

 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 39/98 (39%)

Query: 145 NVRVVTEPVSFNQRTKELLTQLAEKAYVTPKLYAVGEMELGKSNKLYGLTQCTRDLSSVD 204
           N + +     FN+  + +L  L +    +   Y       G +   YG   C + +S  D
Sbjct: 11  NTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSD 70

Query: 205 CKKCLDGIIRELPSCCDGKEGGRVVSGSCNFRYEIYPF 242
           C  CL  ++  + S C+   G RV    C  +YE   F
Sbjct: 71  CTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108



 Score = 37.7 bits (86), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 38  SENFTANGPYETNLNKLIGYLDYQAPPTGF----GKGALGQRPNKAYGLALCRGDVSSSD 93
           ++   +  P+  NL  ++  L      +G+     +   G  P  AYG A C+  +S SD
Sbjct: 12  TQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAP-TAYGRATCKQSISQSD 70

Query: 94  CKTCIVDASGEIRKRCPYNKAAIIWYDNCLLKYTNTEF 131
           C  C+ +    I   C     A +   +C ++Y    F
Sbjct: 71  CTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108


>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
 pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
           In Complex With Isomaltotriose
 pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
           In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
          Length = 643

 Score = 33.5 bits (75), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 67  FGKGALGQRPNKAYGLALCRGD-VSSSDCKTCIVDASGEIRK----RCPYNKAA 115
           FG  ALG RP ++YG    R D V  +  K+ IV A  E  K    R P N AA
Sbjct: 360 FGTSALGNRPQESYGDLKARVDQVRQATGKSLIVGAYMEEPKFDDNRIPLNGAA 413


>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
 pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
          Length = 517

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 32/120 (26%)

Query: 107 KRCPYNKAAIIWYDNCLLKYTNTEFFGQIDNKNKFYMWNVRVVTEP---------VSFNQ 157
           K+ P N+  + W D+     +  E  G  D      +W +  V E          +S N 
Sbjct: 278 KKLPTNQLQVTWEDHA----SGKEDTGTFDT----VLWAIGRVPETRTLNLEKAGISTNP 329

Query: 158 RTKELLTQLAEKAYVTPKLYAVGEMELGK--------------SNKLYGLTQCTRDLSSV 203
           + ++++   A++A   P +YA+G++  G+              + +L+G +    D S+V
Sbjct: 330 KNQKIIVD-AQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNV 388


>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
           Reductase, C- Terminal 3-Residue Truncation
          Length = 488

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 32/120 (26%)

Query: 107 KRCPYNKAAIIWYDNCLLKYTNTEFFGQIDNKNKFYMWNVRVVTEP---------VSFNQ 157
           K+ P N+  + W D+     +  E  G  D      +W +  V E          +S N 
Sbjct: 252 KKLPTNQLQVTWEDHA----SGKEDTGTFDT----VLWAIGRVPETRTLNLEKAGISTNP 303

Query: 158 RTKELLTQLAEKAYVTPKLYAVGEMELGK--------------SNKLYGLTQCTRDLSSV 203
           + ++++   A++A   P +YA+G++  G+              + +L+G +    D S+V
Sbjct: 304 KNQKIIVD-AQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNV 362


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,654,185
Number of Sequences: 62578
Number of extensions: 321052
Number of successful extensions: 590
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 10
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)