Query 025954
Match_columns 245
No_of_seqs 169 out of 1414
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 4E-27 8.6E-32 179.3 6.9 100 32-131 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 5.2E-26 1.1E-30 173.1 10.0 101 141-242 1-106 (106)
3 PF07172 GRP: Glycine rich pro 70.2 4.4 9.5E-05 30.0 2.6 11 1-11 1-11 (95)
4 PHA00008 J DNA packaging prote 13.8 1.2E+02 0.0026 16.7 1.1 10 111-120 11-20 (26)
5 KOG1148 Glutaminyl-tRNA synthe 11.9 90 0.0019 30.9 0.5 49 121-169 282-337 (764)
6 COG2991 Uncharacterized protei 11.0 3.9E+02 0.0084 18.8 3.3 30 8-37 6-35 (77)
7 PF14570 zf-RING_4: RING/Ubox 10.6 1.7E+02 0.0036 18.8 1.3 20 203-222 23-42 (48)
8 PF04726 Microvir_J: Microviru 10.3 1.1E+02 0.0023 16.5 0.2 11 110-120 9-19 (24)
9 PF15183 MRAP: Melanocortin-2 10.2 3.2E+02 0.007 19.8 2.7 18 6-23 44-61 (90)
10 PF13923 zf-C3HC4_2: Zinc fing 9.9 2E+02 0.0044 16.8 1.4 16 205-221 22-37 (39)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.94 E-value=4e-27 Score=179.31 Aligned_cols=100 Identities=45% Similarity=0.980 Sum_probs=77.2
Q ss_pred cCcCC-C-CCcc-CCCChHHHHHHHHHHHhhhcCCC---CCccccccCCCCCeEEEEEEccCCCCccchhHHHHHHHHHH
Q 025954 32 FHFCS-S-SENF-TANGPYETNLNKLIGYLDYQAPP---TGFGKGALGQRPNKAYGLALCRGDVSSSDCKTCIVDASGEI 105 (245)
Q Consensus 32 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~~~~---~~f~~~~~g~~~~~vygl~qCrgD~s~~~C~~C~~~a~~~i 105 (245)
|+.|+ + .+++ +++++|++||+.||+.|..+++. .+|+++..|.++++||||+||++|+++++|+.||+.|..++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 3466 57888999999999999999764 48999988889999999999999999999999999999999
Q ss_pred hhhCCCccceEEEcceeEEEEecccc
Q 025954 106 RKRCPYNKAAIIWYDNCLLKYTNTEF 131 (245)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (245)
++.|+.+++|+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999988
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.93 E-value=5.2e-26 Score=173.13 Aligned_cols=101 Identities=38% Similarity=0.728 Sum_probs=77.3
Q ss_pred EEEec---cccc-cCchhhhHHHHHHHHHHHHHhccC-CcceeeeeeecCCCcceEEEEeecCCCChhhhHHHHHHHHhh
Q 025954 141 FYMWN---VRVV-TEPVSFNQRTKELLTQLAEKAYVT-PKLYAVGEMELGKSNKLYGLTQCTRDLSSVDCKKCLDGIIRE 215 (245)
Q Consensus 141 ~~~~n---~~n~-~~~~~f~~~l~~ll~~l~~~a~~s-~~~fa~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~ 215 (245)
|+.|+ .+++ ++++.|+++++.||..|+++++.. +.+|++++.+. ++++||||+||++||++.+|+.||+.++.+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~-~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~ 79 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGS-GPDTVYGLAQCRGDLSPSDCRACLADAVAN 79 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--S-T---EEEEEEE-TTS-HHHHHHHHHHHHCC
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCC-CCCeEEEEEEcCCCCChhhhHHHHHHHHHH
Confidence 34566 4455 566779999999999999998753 47899998754 789999999999999999999999999999
Q ss_pred ccccCCCCcceEEEcCCeeEEEecCCC
Q 025954 216 LPSCCDGKEGGRVVSGSCNFRYEIYPF 242 (245)
Q Consensus 216 i~~~c~~~~g~~v~~~~C~lRY~~~~F 242 (245)
+.++|++++||+|++++|+||||+++|
T Consensus 80 ~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 80 ISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHhCCCCceEEEECCCEEEEEECCCC
Confidence 999999999999999999999999998
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.21 E-value=4.4 Score=30.05 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=7.4
Q ss_pred CCCchhhHHHH
Q 025954 1 MASPSIKFASS 11 (245)
Q Consensus 1 ~~~~~~~~~~~ 11 (245)
|||+.+||+.+
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 99888655433
No 4
>PHA00008 J DNA packaging protein
Probab=13.78 E-value=1.2e+02 Score=16.69 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=8.2
Q ss_pred CccceEEEcc
Q 025954 111 YNKAAIIWYD 120 (245)
Q Consensus 111 ~~~~a~i~~~ 120 (245)
..++|+.||-
T Consensus 11 r~KGARLWYV 20 (26)
T PHA00008 11 RRKGARLWYV 20 (26)
T ss_pred ccCceEEEEe
Confidence 4689999985
No 5
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=11.86 E-value=90 Score=30.90 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=31.4
Q ss_pred eeEEEEeccc-------ccccccccceEEEeccccccCchhhhHHHHHHHHHHHHH
Q 025954 121 NCLLKYTNTE-------FFGQIDNKNKFYMWNVRVVTEPVSFNQRTKELLTQLAEK 169 (245)
Q Consensus 121 ~C~lRYs~~~-------f~~~~~~~~~~~~~n~~n~~~~~~f~~~l~~ll~~l~~~ 169 (245)
-|+|||+|.+ ||......-.|.-+.+..++-.+.|-+.|.++.-.|+.+
T Consensus 282 ~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyFdqLy~~av~LIrk 337 (764)
T KOG1148|consen 282 VCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYFDQLYELAVELIRK 337 (764)
T ss_pred eEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHHHHHHHHHHHHHhc
Confidence 4999999874 454443333344456667776666666677777777654
No 6
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=10.96 E-value=3.9e+02 Score=18.83 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcccCcCCC
Q 025954 8 FASSLYLLIAFAFFLQTAFGVDPLFHFCSS 37 (245)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 37 (245)
+...+||++++.....-.....++...|+.
T Consensus 6 ltFg~Fllvi~gMsiG~I~krk~I~GSCGG 35 (77)
T COG2991 6 LTFGIFLLVIAGMSIGYIFKRKSIKGSCGG 35 (77)
T ss_pred HHHHHHHHHHHHHhHhhheecccccccccc
Confidence 333444443333333333344455556653
No 7
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=10.61 E-value=1.7e+02 Score=18.84 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHhhccccCCC
Q 025954 203 VDCKKCLDGIIRELPSCCDG 222 (245)
Q Consensus 203 ~~C~~CL~~a~~~i~~~c~~ 222 (245)
.-|+.|..++..+....||+
T Consensus 23 ~IC~~C~~~i~~~~~g~CPg 42 (48)
T PF14570_consen 23 QICRFCYHDILENEGGRCPG 42 (48)
T ss_dssp ---HHHHHHHTTSS-SB-TT
T ss_pred cHHHHHHHHHHhccCCCCCC
Confidence 45999999999877888986
No 8
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=10.34 E-value=1.1e+02 Score=16.51 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.4
Q ss_pred CCccceEEEcc
Q 025954 110 PYNKAAIIWYD 120 (245)
Q Consensus 110 ~~~~~a~i~~~ 120 (245)
..+++|+.||-
T Consensus 9 ~~~kgarlwyv 19 (24)
T PF04726_consen 9 GKRKGARLWYV 19 (24)
T ss_dssp -SSSSS----S
T ss_pred CccCceEEEEe
Confidence 34689999985
No 9
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=10.16 E-value=3.2e+02 Score=19.79 Aligned_cols=18 Identities=11% Similarity=0.414 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 025954 6 IKFASSLYLLIAFAFFLQ 23 (245)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (245)
+.|+.++.++++++++.+
T Consensus 44 v~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 44 VSLAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHh
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=9.88 E-value=2e+02 Score=16.81 Aligned_cols=16 Identities=25% Similarity=0.895 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhccccCC
Q 025954 205 CKKCLDGIIRELPSCCD 221 (245)
Q Consensus 205 C~~CL~~a~~~i~~~c~ 221 (245)
|..|+...+.+ ...||
T Consensus 22 C~~C~~~~~~~-~~~CP 37 (39)
T PF13923_consen 22 CKECIEKYLEK-NPKCP 37 (39)
T ss_dssp EHHHHHHHHHC-TSB-T
T ss_pred hHHHHHHHHHC-cCCCc
Done!