Query 025954
Match_columns 245
No_of_seqs 169 out of 1414
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 1.3E-28 4.4E-33 187.1 12.6 105 138-242 4-108 (108)
2 3a2e_A Ginkbilobin-2; domain 2 100.0 2.9E-29 1E-33 190.7 8.4 103 28-131 3-108 (108)
3 2e79_A Ginkbilobin-2; DUF26 fo 100.0 6.2E-29 2.1E-33 188.9 8.5 103 28-131 3-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 100.0 3.8E-28 1.3E-32 184.5 12.7 107 136-242 2-108 (108)
5 1gff_3 Bacteriophage G4 capsid 12.9 84 0.0029 16.3 1.1 11 110-120 10-20 (26)
6 2xk0_A Polycomb protein PCL; t 12.8 76 0.0026 21.1 1.2 12 119-130 41-52 (69)
7 1weo_A Cellulose synthase, cat 12.3 67 0.0023 22.6 0.9 19 203-221 44-62 (93)
8 1m06_J J protein, small core p 6.7 84 0.0029 16.4 -0.3 10 111-120 10-19 (26)
9 2kqs_B Death domain-associated 6.1 1.4E+02 0.0049 15.8 0.3 11 189-199 3-13 (26)
10 1g25_A CDK-activating kinase a 6.0 2.6E+02 0.009 17.0 1.7 19 203-221 29-47 (65)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.96 E-value=1.3e-28 Score=187.13 Aligned_cols=105 Identities=23% Similarity=0.440 Sum_probs=96.2
Q ss_pred cceEEEeccccccCchhhhHHHHHHHHHHHHHhccCCcceeeeeeecCCCcceEEEEeecCCCChhhhHHHHHHHHhhcc
Q 025954 138 KNKFYMWNVRVVTEPVSFNQRTKELLTQLAEKAYVTPKLYAVGEMELGKSNKLYGLTQCTRDLSSVDCKKCLDGIIRELP 217 (245)
Q Consensus 138 ~~~~~~~n~~n~~~~~~f~~~l~~ll~~l~~~a~~s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~i~ 217 (245)
.-..+.||.+++++++.|+++|+.||..|+.+++.++.+|+++..+..++++||||+||+||+++++|+.||+.++.+++
T Consensus 4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999887777888877665467899999999999999999999999999999
Q ss_pred ccCCCCcceEEEcCCeeEEEecCCC
Q 025954 218 SCCDGKEGGRVVSGSCNFRYEIYPF 242 (245)
Q Consensus 218 ~~c~~~~g~~v~~~~C~lRY~~~~F 242 (245)
++||+++||+||+++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999998
No 2
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.96 E-value=2.9e-29 Score=190.65 Aligned_cols=103 Identities=21% Similarity=0.490 Sum_probs=92.6
Q ss_pred CCcccCcCCCCCccCCCChHHHHHHHHHHHhhhcCCCC--CccccccC-CCCCeEEEEEEccCCCCccchhHHHHHHHHH
Q 025954 28 VDPLFHFCSSSENFTANGPYETNLNKLIGYLDYQAPPT--GFGKGALG-QRPNKAYGLALCRGDVSSSDCKTCIVDASGE 104 (245)
Q Consensus 28 ~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~~~~~--~f~~~~~g-~~~~~vygl~qCrgD~s~~~C~~C~~~a~~~ 104 (245)
.+++++.|++ ++|+++++|++||+.||++|+++++.+ +|++...| .++++||||+|||||+++++|+.||+.|+.+
T Consensus 3 t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 3a2e_A 3 TAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3457889975 599999999999999999999998753 56666655 4679999999999999999999999999999
Q ss_pred HhhhCCCccceEEEcceeEEEEecccc
Q 025954 105 IRKRCPYNKAAIIWYDNCLLKYTNTEF 131 (245)
Q Consensus 105 i~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (245)
|++.||++++|+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999999988
No 3
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.95 E-value=6.2e-29 Score=188.86 Aligned_cols=103 Identities=21% Similarity=0.477 Sum_probs=94.9
Q ss_pred CCcccCcCCCCCccCCCChHHHHHHHHHHHhhhcCCC--CCccccccCCCC-CeEEEEEEccCCCCccchhHHHHHHHHH
Q 025954 28 VDPLFHFCSSSENFTANGPYETNLNKLIGYLDYQAPP--TGFGKGALGQRP-NKAYGLALCRGDVSSSDCKTCIVDASGE 104 (245)
Q Consensus 28 ~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~~~~--~~f~~~~~g~~~-~~vygl~qCrgD~s~~~C~~C~~~a~~~ 104 (245)
.+++++.|++ ++++++++|++||+.||+.|+.+++. .+|++++.|.++ ++||||+|||||+++++|+.||+.|+.+
T Consensus 3 t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 3 TAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 4568899997 69999999999999999999999864 368888888665 8999999999999999999999999999
Q ss_pred HhhhCCCccceEEEcceeEEEEecccc
Q 025954 105 IRKRCPYNKAAIIWYDNCLLKYTNTEF 131 (245)
Q Consensus 105 i~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (245)
+++.||++++|+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999987
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.95 E-value=3.8e-28 Score=184.51 Aligned_cols=107 Identities=22% Similarity=0.440 Sum_probs=96.7
Q ss_pred cccceEEEeccccccCchhhhHHHHHHHHHHHHHhccCCcceeeeeeecCCCcceEEEEeecCCCChhhhHHHHHHHHhh
Q 025954 136 DNKNKFYMWNVRVVTEPVSFNQRTKELLTQLAEKAYVTPKLYAVGEMELGKSNKLYGLTQCTRDLSSVDCKKCLDGIIRE 215 (245)
Q Consensus 136 ~~~~~~~~~n~~n~~~~~~f~~~l~~ll~~l~~~a~~s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~ 215 (245)
++.+.++.|+.+++++++.|+++++.||..|+.+++.++.+|++++.+.++.++||||+||+||+++.+|+.||+.++.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 34567888988899999999999999999999998765567888876653347999999999999999999999999999
Q ss_pred ccccCCCCcceEEEcCCeeEEEecCCC
Q 025954 216 LPSCCDGKEGGRVVSGSCNFRYEIYPF 242 (245)
Q Consensus 216 i~~~c~~~~g~~v~~~~C~lRY~~~~F 242 (245)
++++||+++||+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999998
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=12.92 E-value=84 Score=16.33 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.6
Q ss_pred CCccceEEEcc
Q 025954 110 PYNKAAIIWYD 120 (245)
Q Consensus 110 ~~~~~a~i~~~ 120 (245)
...++|+.||-
T Consensus 10 ~r~kgarlwyv 20 (26)
T 1gff_3 10 GKSKGARLWYV 20 (26)
T ss_pred CCCCceEEEEe
Confidence 34689999985
No 6
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=12.78 E-value=76 Score=21.08 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=9.7
Q ss_pred cceeEEEEeccc
Q 025954 119 YDNCLLKYTNTE 130 (245)
Q Consensus 119 ~~~C~lRYs~~~ 130 (245)
-..|++||+|.+
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 357999999875
No 7
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=12.35 E-value=67 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHhhccccCC
Q 025954 203 VDCKKCLDGIIRELPSCCD 221 (245)
Q Consensus 203 ~~C~~CL~~a~~~i~~~c~ 221 (245)
.-|+.|+..-..+-.+.||
T Consensus 44 PvCrpCyEYErkeG~q~Cp 62 (93)
T 1weo_A 44 PACRPCYEYERREGTQNCP 62 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCT
T ss_pred hhhHHHHHHHHhccCcccc
Confidence 5799999999999999999
No 8
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=6.71 E-value=84 Score=16.38 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=7.9
Q ss_pred CccceEEEcc
Q 025954 111 YNKAAIIWYD 120 (245)
Q Consensus 111 ~~~~a~i~~~ 120 (245)
.+++|+.||-
T Consensus 10 r~kgarlwyv 19 (26)
T 1m06_J 10 RRKGARLWYV 19 (26)
T ss_dssp CCSSSCCCCS
T ss_pred cCCceEEEEE
Confidence 4689999984
No 9
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=6.10 E-value=1.4e+02 Score=15.79 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=7.8
Q ss_pred ceEEEEeecCC
Q 025954 189 KLYGLTQCTRD 199 (245)
Q Consensus 189 ~vYglaQC~~D 199 (245)
++..+.||+|+
T Consensus 3 kv~~~tqcdP~ 13 (26)
T 2kqs_B 3 KTSVATQCDPE 13 (26)
T ss_pred cccccccCCcc
Confidence 46677788876
No 10
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=5.95 E-value=2.6e+02 Score=16.96 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHhhccccCC
Q 025954 203 VDCKKCLDGIIRELPSCCD 221 (245)
Q Consensus 203 ~~C~~CL~~a~~~i~~~c~ 221 (245)
.-|..|+.....+-...||
T Consensus 29 ~fC~~Ci~~~~~~~~~~CP 47 (65)
T 1g25_A 29 TLCESCVDLLFVRGAGNCP 47 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCT
T ss_pred HhHHHHHHHHHHcCCCcCC
Confidence 4599999998766556677
Done!