Query 025954
Match_columns 245
No_of_seqs 169 out of 1414
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 21:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1weoa_ g.44.1.1 (A:) Cellulos 7.8 59 0.0043 21.0 0.9 20 202-221 43-62 (93)
2 d1f32a_ d.62.1.1 (A:) Pepsin i 7.5 1E+02 0.0075 21.6 2.1 21 105-125 61-81 (147)
3 d1ansa_ g.11.1.1 (A:) Neurotox 6.8 35 0.0026 16.5 -0.5 17 218-234 2-18 (27)
4 d1g25a_ g.44.1.1 (A:) TFIIH Ma 6.7 1.1E+02 0.0077 17.8 1.7 21 202-222 28-48 (65)
5 d1vqoe2 d.141.1.1 (E:80-172) R 6.7 87 0.0063 20.4 1.3 29 97-125 61-90 (93)
6 d1cl4a_ g.40.1.1 (A:) Nucleoca 6.6 27 0.002 18.3 -1.1 20 106-125 2-21 (32)
7 d1l8na2 d.92.2.2 (A:4-142) alp 5.7 34 0.0025 23.7 -1.4 12 119-130 2-13 (139)
8 d1k0ia2 d.16.1.2 (A:174-275) p 5.6 2.7E+02 0.02 18.1 3.4 30 173-204 31-60 (102)
9 d1rmda2 g.44.1.1 (A:1-86) V(D) 5.6 1.4E+02 0.0099 18.7 1.8 21 202-222 43-63 (86)
10 d1ha9a_ g.3.2.1 (A:) Trypsin i 5.3 58 0.0042 16.8 -0.2 7 193-199 12-18 (34)
No 1
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.80 E-value=59 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHhhccccCC
Q 025954 202 SVDCKKCLDGIIRELPSCCD 221 (245)
Q Consensus 202 ~~~C~~CL~~a~~~i~~~c~ 221 (245)
-.-|+.|..-=..+-.+.||
T Consensus 43 FPvCrpCyEYErkeG~q~Cp 62 (93)
T d1weoa_ 43 FPACRPCYEYERREGTQNCP 62 (93)
T ss_dssp CCCCHHHHHHHHHTSCSSCT
T ss_pred CccchHHHHHHHhccCccCc
Confidence 35699999999999999999
No 2
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=7.46 E-value=1e+02 Score=21.56 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=17.4
Q ss_pred HhhhCCCccceEEEcceeEEE
Q 025954 105 IRKRCPYNKAAIIWYDNCLLK 125 (245)
Q Consensus 105 i~~~C~~~~~a~i~~~~C~lR 125 (245)
.++-|...-.-..++|+|+++
T Consensus 61 ~PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 61 PPPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CCGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCCcCcceEEEEeeeEEE
Confidence 456898877788889999997
No 3
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=6.81 E-value=35 Score=16.51 Aligned_cols=17 Identities=35% Similarity=0.650 Sum_probs=11.1
Q ss_pred ccCCCCcceEEEcCCee
Q 025954 218 SCCDGKEGGRVVSGSCN 234 (245)
Q Consensus 218 ~~c~~~~g~~v~~~~C~ 234 (245)
+|||--.||--|..+|+
T Consensus 2 sccpcywggcpwgqncy 18 (27)
T d1ansa_ 2 SCCPCYWGGCPWGQNCY 18 (27)
T ss_dssp CSCCSTTTTCSSSCSSC
T ss_pred ccccccccCCccccccc
Confidence 46776666666666665
No 4
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.71 E-value=1.1e+02 Score=17.83 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHhhccccCCC
Q 025954 202 SVDCKKCLDGIIRELPSCCDG 222 (245)
Q Consensus 202 ~~~C~~CL~~a~~~i~~~c~~ 222 (245)
..-|..||...+..-...||.
T Consensus 28 H~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 28 HTLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CCEEHHHHHHHHHTTSSSCTT
T ss_pred hHhhHHHHHHHhCcCcCCCCC
Confidence 355999999998776777884
No 5
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.67 E-value=87 Score=20.37 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhCC-CccceEEEcceeEEE
Q 025954 97 CIVDASGEIRKRCP-YNKAAIIWYDNCLLK 125 (245)
Q Consensus 97 C~~~a~~~i~~~C~-~~~~a~i~~~~C~lR 125 (245)
=++..++.|.+.|. ..++-+++.|+.|+-
T Consensus 61 ~V~qtAA~Ieq~t~vk~kD~R~FlDGIYv~ 90 (93)
T d1vqoe2 61 AVGQTAADIEQLTRINDKDVRVFQDGVYIT 90 (93)
T ss_dssp HHHHHHHHHHHTTCCSSSCTTTCCCEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCccEeecCEEEE
Confidence 34556678888886 457889999998873
No 6
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=6.62 E-value=27 Score=18.26 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=15.5
Q ss_pred hhhCCCccceEEEcceeEEE
Q 025954 106 RKRCPYNKAAIIWYDNCLLK 125 (245)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lR 125 (245)
+..||.=+.++-|-.+|.-+
T Consensus 2 P~lCPrC~kG~HWa~~Crsk 21 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSK 21 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCT
T ss_pred CccCccccCcchHHHHhhhh
Confidence 56788888888888888643
No 7
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.69 E-value=34 Score=23.71 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=9.6
Q ss_pred cceeEEEEeccc
Q 025954 119 YDNCLLKYTNTE 130 (245)
Q Consensus 119 ~~~C~lRYs~~~ 130 (245)
||.|+|||.-.+
T Consensus 2 y~~~WLrY~~~~ 13 (139)
T d1l8na2 2 YEPCWLRYERKD 13 (139)
T ss_dssp CCCTTCCCCCCC
T ss_pred CcchhcCCCccc
Confidence 678999998654
No 8
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.59 E-value=2.7e+02 Score=18.10 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.0
Q ss_pred CCcceeeeeeecCCCcceEEEEeecCCCChhh
Q 025954 173 TPKLYAVGEMELGKSNKLYGLTQCTRDLSSVD 204 (245)
Q Consensus 173 s~~~fa~~~~~~~~~~~vYglaQC~~Dls~~~ 204 (245)
+.++||-.++....-.+.| .||.++-+.++
T Consensus 31 h~rGFAL~SmRs~~~sRyY--lQc~~~d~~e~ 60 (102)
T d1k0ia2 31 HPRGFALCSQRSATRSQYY--VQVPLSEKVED 60 (102)
T ss_dssp CTTCCEEEEEEETTEEEEE--EEECTTCCGGG
T ss_pred cCCceEEEeccCCcceEEE--EEcCCCCCccc
Confidence 4578888887653445666 69988876655
No 9
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.56 E-value=1.4e+02 Score=18.71 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHhhccccCCC
Q 025954 202 SVDCKKCLDGIIRELPSCCDG 222 (245)
Q Consensus 202 ~~~C~~CL~~a~~~i~~~c~~ 222 (245)
..-|+.|+...+..-...||.
T Consensus 43 H~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 43 HLFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp CEEEHHHHHHHHHHTCSBCTT
T ss_pred ChhhHHHHHHHHhhCCCcCcc
Confidence 356999999988765667883
No 10
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=5.33 E-value=58 Score=16.75 Aligned_cols=7 Identities=57% Similarity=1.251 Sum_probs=5.3
Q ss_pred EEeecCC
Q 025954 193 LTQCTRD 199 (245)
Q Consensus 193 laQC~~D 199 (245)
|-||++|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 5688887
Done!