BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025959
         (245 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 15/99 (15%)

Query: 76  TVFAPTDNAFNNLEKGLLNNL----DNQKQVQLVLYHVTSKFYRQSDLL--LVSNPVR-- 127
           TVFAPTD AF  L +G + +L    + +K  +++ YHV       SDL   + +  V   
Sbjct: 38  TVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDLTEGMTAETVEGG 97

Query: 128 ----TLASGQDVWGLNFTGQGNQVNVSSGVVETPINSVL 162
               TL  G  V G++ +     V+ S+GV+   I+ VL
Sbjct: 98  ALTVTLEGGPKVNGVSISQP--DVDASNGVIHV-IDGVL 133


>pdb|1NYO|A Chain A, Solution Structure Of The Antigenic Tb Protein Mpt70MPB70
          Length = 163

 Score = 33.9 bits (76), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)

Query: 76  TVFAPTDNAFNNLEKGLLNNLDNQKQV--QLVLYHVTSKFYRQSDLLLVSNPVRTLASGQ 133
           TVFAPT+ AF+ L    ++ L     +   ++ YHV +           ++P   + + Q
Sbjct: 67  TVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ---------TSPANVVGTRQ 117

Query: 134 DVWG--LNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLL 178
            + G  +  TGQGN + V  G  +     V   N    VY +D VL+
Sbjct: 118 TLQGASVTVTGQGNSLKV--GNADVVCGGVSTANA--TVYMIDSVLM 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,802,030
Number of Sequences: 62578
Number of extensions: 151930
Number of successful extensions: 397
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 4
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)