Query 025959
Match_columns 245
No_of_seqs 229 out of 1278
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 3.6E-25 7.8E-30 187.8 10.5 136 34-183 46-185 (187)
2 PF02469 Fasciclin: Fasciclin 99.9 1.1E-22 2.4E-27 161.1 10.1 125 46-179 1-128 (128)
3 smart00554 FAS1 Four repeated 99.8 1.3E-19 2.8E-24 138.1 7.4 96 76-180 1-99 (99)
4 KOG1437 Fasciclin and related 99.1 6.2E-11 1.3E-15 117.9 6.0 133 34-179 372-507 (682)
5 KOG1437 Fasciclin and related 99.0 1.5E-09 3.2E-14 108.1 9.1 133 35-183 507-645 (682)
6 COG3057 SeqA Negative regulato 31.8 35 0.00076 28.7 2.1 10 4-13 23-32 (181)
7 PF15086 UPF0542: Uncharacteri 23.9 53 0.0012 24.2 1.6 20 5-24 22-41 (74)
8 PF04839 PSRP-3_Ycf65: Plastid 22.8 1.1E+02 0.0023 20.9 2.8 28 77-105 5-35 (49)
9 PF07462 MSP1_C: Merozoite sur 22.5 1.8E+02 0.0039 29.3 5.4 6 177-182 257-262 (574)
10 PF02680 DUF211: Uncharacteriz 21.8 32 0.00068 26.6 0.1 20 163-182 67-86 (95)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=3.6e-25 Score=187.79 Aligned_cols=136 Identities=24% Similarity=0.339 Sum_probs=113.6
Q ss_pred CCCCHHHHHhcCCChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhcc----HHHHHHhhhhcc
Q 025959 34 GPVNLTGILDKNGQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNLD----NQKQVQLVLYHV 109 (245)
Q Consensus 34 ~~~nI~~iL~~~g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~Ls----~~~l~~LL~yHV 109 (245)
...+|.+...++++|++|..+++.++|.++|+. .++||||||||+||.+++.++++.|- +++|..+|.|||
T Consensus 46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~-----~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHV 120 (187)
T COG2335 46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNE-----TGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHV 120 (187)
T ss_pred chhHHHHHHccCcchHHHHHHHHhhhhHHHhcC-----CCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEE
Confidence 356788888899999999999999999999997 89999999999999999999998873 468999999999
Q ss_pred cccccchhhhccCCcceeccCCCCceeEEEEEeecceEEEecceeeeeeeeccccCCCeEEEEECccccCCCCC
Q 025959 110 TSKFYRQSDLLLVSNPVRTLASGQDVWGLNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLLPEELS 183 (245)
Q Consensus 110 ip~~~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLlP~~l~ 183 (245)
++|+++.+++... +.++|..|.. ++|...++.++|+. ++|...++..+||+||+||+||+|+...
T Consensus 121 v~Gk~~~~~l~~~-~~v~t~~G~~----~~i~~~~~~~~Vn~----a~v~~~di~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 121 VEGKITAADLKSS-GSVKTVQGAD----LKIKVTGGGVYVND----ATVTIADINASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred EcCcccHHHhhcc-ccceeecCce----EEEEEcCCcEEEee----eEEEeccEeccCcEEEEEeeeccCCCcc
Confidence 9999999999865 4799998763 44444444588874 4444445667899999999999998753
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.88 E-value=1.1e-22 Score=161.09 Aligned_cols=125 Identities=25% Similarity=0.336 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhc--cHHHHHHhhhhcccccccchhhhccCC
Q 025959 46 GQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNL--DNQKQVQLVLYHVTSKFYRQSDLLLVS 123 (245)
Q Consensus 46 g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~L--s~~~l~~LL~yHVip~~~~~s~l~~~s 123 (245)
++||+|.++|+++|+.+.|++ +.+.||||||+|+||++++.+..+.+ ..+++.++|+|||+++.++.+++....
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~----~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLND----SDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGC----SSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhc----CCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence 479999999999999999953 26899999999999999976656655 567899999999999999999998762
Q ss_pred cceec-cCCCCceeEEEEEeecceEEEecceeeeeeeeccccCCCeEEEEECccccC
Q 025959 124 NPVRT-LASGQDVWGLNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLLP 179 (245)
Q Consensus 124 ~~v~T-~~g~~~~~~LnVt~~g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLlP 179 (245)
..++| +.|. .+.++....++.++|++ +++|....+...||+||+||+||+|
T Consensus 77 ~~~~t~~~g~--~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 77 QTLETLLNGQ--PLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEEBSSTTC--EEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred ccceeccCCC--EEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 36888 5554 25555543367888876 4555545556678999999999998
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.80 E-value=1.3e-19 Score=138.09 Aligned_cols=96 Identities=40% Similarity=0.482 Sum_probs=76.2
Q ss_pred EEEecCcHHHHhchhhhhhhccHH-HHHHhhhhcccccccchhhhccCCcceeccCCCCceeEEEEEeec--ceEEEecc
Q 025959 76 TVFAPTDNAFNNLEKGLLNNLDNQ-KQVQLVLYHVTSKFYRQSDLLLVSNPVRTLASGQDVWGLNFTGQG--NQVNVSSG 152 (245)
Q Consensus 76 TVFAPTD~AF~~l~~~~l~~Ls~~-~l~~LL~yHVip~~~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g--~~V~v~~g 152 (245)
|||||+|+||+++....++.+..+ .++++|+|||+++.++.++|..+ ..++|+.|. .|.++.++ +.+.+++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~~-~~~~Tl~g~----~l~v~~~~~~~~i~in~- 74 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLNG-GTLPTLAGS----KLRVTRSGDSGTVTVNG- 74 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhccC-CccccCCCC----EEEEEEeCCCCeEEEcc-
Confidence 899999999999987666677544 89999999999999999999875 478999864 24555544 6777765
Q ss_pred eeeeeeeeccccCCCeEEEEECccccCC
Q 025959 153 VVETPINSVLRQNFPLAVYQVDKVLLPE 180 (245)
Q Consensus 153 vv~a~V~n~~~~~~ngvIhvID~VLlP~ 180 (245)
++|...++..+||+||+||+||+|+
T Consensus 75 ---~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 75 ---ARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred ---eEEEECCEecCCeEEEEECceeCCC
Confidence 3444555566789999999999986
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.12 E-value=6.2e-11 Score=117.89 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=99.6
Q ss_pred CCCCHHHHHhcCCChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhccHHHHHHhhhhcccccc
Q 025959 34 GPVNLTGILDKNGQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNLDNQKQVQLVLYHVTSKF 113 (245)
Q Consensus 34 ~~~nI~~iL~~~g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~Ls~~~l~~LL~yHVip~~ 113 (245)
+..+++++..++ +-+++.+++.+-|+.+.|.. ++.+|+|+|+|++|+.+.+... +.-++++|+||+|+.+
T Consensus 372 ~~~~l~~La~e~-~~st~~rlv~elgll~~L~~-----n~e~t~~lp~n~~fd~~~~~~~----r~l~~qIL~~HII~~~ 441 (682)
T KOG1437|consen 372 SLKNLMSLARED-EISTSMRLVAELGLLTALAP-----NDEATLLLPTNNLFDDLTPLES----RRLAEQILYNHIIPEY 441 (682)
T ss_pred hHHHHHHHHhcc-cccHHHHHHHhccceEEEcC-----CCceEEeeehhhhccCCChhhh----HHHHHHHHHHhCcchh
Confidence 467788888776 36999999999998887765 5569999999999999765322 2337999999999999
Q ss_pred cchhhhccCCcceeccCCCCceeEEEEEeec---ceEEEecceeeeeeeeccccCCCeEEEEECccccC
Q 025959 114 YRQSDLLLVSNPVRTLASGQDVWGLNFTGQG---NQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLLP 179 (245)
Q Consensus 114 ~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g---~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLlP 179 (245)
.+.+++..+.+.++|..+.. +..-+.+.. +...+..|.. +.|...+....||+||.||+||.|
T Consensus 442 ~~~~~~y~~~~~v~t~g~~~--l~~fv~r~~~s~~~t~i~~~~~-~~Ii~aDi~~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 442 LTSSSMYNGQTTVRTLGKNK--LLYFVYRHSVSANVTDILIGNE-ACIIEADISVKNGVVHIIDRVLDP 507 (682)
T ss_pred hhhhhhhcccceeeccCCeE--EEEEEecccccccceeeeccce-eeEEecccceecCceEEeeEEcCc
Confidence 99999998866788886542 332333322 2122222223 666677788889999999999999
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.98 E-value=1.5e-09 Score=108.15 Aligned_cols=133 Identities=23% Similarity=0.329 Sum_probs=91.4
Q ss_pred CCCHHHHHhcCCChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhc-cHHHHHHhhhhcccccc
Q 025959 35 PVNLTGILDKNGQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNL-DNQKQVQLVLYHVTSKF 113 (245)
Q Consensus 35 ~~nI~~iL~~~g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~L-s~~~l~~LL~yHVip~~ 113 (245)
|.++.+.|++++++|.|.++++..++.++|.. .+.||+|+|||+||.+...+... + ....+..+++||++++.
T Consensus 507 p~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~-----~~~~t~fvPt~ka~~~~~~~~~~-~~~~~~l~~~l~yH~v~~~ 580 (682)
T KOG1437|consen 507 PVSLMEDLKTDGRISGTVQGLEGVLLPEELTP-----EGNYTLFVPTNKAWQKSTKDEKS-LFHKKALQDFLKYHLVPGQ 580 (682)
T ss_pred cccHHHHHhhccchhhhHHhhhhcCChhhhcc-----CCceEEEeecccccccCCcchhh-cchHHHHHHHHHhccccce
Confidence 47899999999999999999999999999965 78999999999999988654332 3 34688999999999998
Q ss_pred cchhhhccCCcceeccCCCCceeEEEEEeecceEEE----ecceee-eeeeeccccCCCeEEEEECccccCCCCC
Q 025959 114 YRQSDLLLVSNPVRTLASGQDVWGLNFTGQGNQVNV----SSGVVE-TPINSVLRQNFPLAVYQVDKVLLPEELS 183 (245)
Q Consensus 114 ~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g~~V~v----~~gvv~-a~V~n~~~~~~ngvIhvID~VLlP~~l~ 183 (245)
+. +.-.+.+. ++.+ +.+++.+ +.+-+ .++.++ .++........||++|+||.||.|+.++
T Consensus 581 ~~---ls~~~~~~-v~~~----~k~s~~~--~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~ 645 (682)
T KOG1437|consen 581 SR---LSLGSSPY-VMIQ----VKLSLRG--DHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLP 645 (682)
T ss_pred ee---eecccccc-eeee----eeEEEec--ccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcch
Confidence 75 22221111 1111 1122222 21111 123222 2333445556789999999999998543
No 6
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=31.82 E-value=35 Score=28.69 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=8.8
Q ss_pred cchhhHHHHH
Q 025959 4 ASASHILLTL 13 (245)
Q Consensus 4 ~~~~~~~~~~ 13 (245)
-+||||||++
T Consensus 23 ESASDILRRl 32 (181)
T COG3057 23 ESASDILRRM 32 (181)
T ss_pred ccHHHHHHHH
Confidence 3799999998
No 7
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.94 E-value=53 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHhccc
Q 025959 5 SASHILLTLAPLVLLLVLPQ 24 (245)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (245)
|+.-.|++|+|+|+++..++
T Consensus 22 Fl~~vll~LtPlfiisa~lS 41 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLS 41 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 45566799999999887665
No 8
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=22.82 E-value=1.1e+02 Score=20.88 Aligned_cols=28 Identities=21% Similarity=0.583 Sum_probs=16.9
Q ss_pred EEecCcHHHHhchhhhhh---hccHHHHHHhh
Q 025959 77 VFAPTDNAFNNLEKGLLN---NLDNQKQVQLV 105 (245)
Q Consensus 77 VFAPTD~AF~~l~~~~l~---~Ls~~~l~~LL 105 (245)
.|.|.++|++.++.. |+ .+++.+...||
T Consensus 5 fFWPr~DAWe~lk~e-Le~K~WIs~~e~i~lL 35 (49)
T PF04839_consen 5 FFWPREDAWEQLKNE-LESKPWISEKERIELL 35 (49)
T ss_dssp EEETTS-HHHHHHHH-HHHSTTS-HHHHHHHH
T ss_pred ccCCCCcHHHHHHHH-HhcCCCCCHHHHHHHH
Confidence 699999999999753 33 23454444444
No 9
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.49 E-value=1.8e+02 Score=29.32 Aligned_cols=6 Identities=50% Similarity=0.755 Sum_probs=3.1
Q ss_pred ccCCCC
Q 025959 177 LLPEEL 182 (245)
Q Consensus 177 LlP~~l 182 (245)
|+|...
T Consensus 257 LLPKvt 262 (574)
T PF07462_consen 257 LLPKVT 262 (574)
T ss_pred hCCCCC
Confidence 566443
No 10
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=21.83 E-value=32 Score=26.65 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=13.5
Q ss_pred ccCCCeEEEEECccccCCCC
Q 025959 163 RQNFPLAVYQVDKVLLPEEL 182 (245)
Q Consensus 163 ~~~~ngvIhvID~VLlP~~l 182 (245)
+..-+|+||.||.|..=..+
T Consensus 67 Ie~~Gg~IHSIDeVvaG~~i 86 (95)
T PF02680_consen 67 IEELGGVIHSIDEVVAGKRI 86 (95)
T ss_dssp HHHTT-EEEEEEEEEEESS-
T ss_pred HHHcCCeEEeeeeeeeccee
Confidence 45567899999999764443
Done!