Query 025959
Match_columns 245
No_of_seqs 229 out of 1278
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7d_A Fasciclin-like protein; 100.0 1E-29 3.4E-34 205.4 8.2 132 35-181 2-137 (137)
2 2vxp_A Transforming growth fac 100.0 4.8E-28 1.6E-32 194.4 13.2 129 36-178 2-132 (132)
3 1nyo_A Immunogenic protein MPT 99.9 5.6E-28 1.9E-32 201.1 9.8 131 34-181 26-163 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.9 4.3E-24 1.5E-28 194.0 9.7 144 35-185 158-315 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.9 9E-24 3.1E-28 191.9 11.2 139 34-181 4-158 (324)
6 1xrx_A SEQA protein; protein f 21.4 34 0.0012 22.2 1.1 9 5-13 24-32 (50)
7 3bpd_A Uncharacterized protein 19.0 33 0.0011 25.7 0.7 17 162-178 68-84 (100)
8 2raq_A Conserved protein MTH88 16.6 30 0.001 25.8 0.0 20 163-182 69-88 (97)
9 2x3d_A SSO6206; unknown functi 15.4 32 0.0011 25.5 -0.0 16 163-178 68-83 (96)
10 2kt9_A Probable 30S ribosomal 12.9 1.1E+02 0.0038 23.3 2.3 14 77-90 40-53 (116)
No 1
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.96 E-value=1e-29 Score=205.41 Aligned_cols=132 Identities=26% Similarity=0.372 Sum_probs=113.9
Q ss_pred CCCHHHHHhcCCChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhc----cHHHHHHhhhhccc
Q 025959 35 PVNLTGILDKNGQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNL----DNQKQVQLVLYHVT 110 (245)
Q Consensus 35 ~~nI~~iL~~~g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~L----s~~~l~~LL~yHVi 110 (245)
+.||.++|++.++|++|.++|+++|+.+.|++ .++||||||+|+||++++.+.++.| ++++++++|+|||+
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv 76 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKG-----DGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVV 76 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTS-----SSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcC-----CCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence 57999999999999999999999999999987 6899999999999999988888887 45789999999999
Q ss_pred ccccchhhhccCCcceeccCCCCceeEEEEEeecceEEEecceeeeeeeeccccCCCeEEEEECccccCCC
Q 025959 111 SKFYRQSDLLLVSNPVRTLASGQDVWGLNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLLPEE 181 (245)
Q Consensus 111 p~~~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLlP~~ 181 (245)
++.++.++|..+ ..++|+.|. .|+|+.+++ ++|++ ++|...++...||+||+||+||+|+.
T Consensus 77 ~~~~~~~~l~~~-~~~~tl~G~----~l~v~~~~g-v~vn~----a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 77 PGEVMSSDLTEG-MTAETVEGG----ALTVTLEGG-PKVNG----VSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp ESCCCTTTSCSS-EEEECTTSC----EEEEECTTS-CEETT----EECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred CcEEcHHHhcCC-CeeeccCCc----eEEEEecCC-EEEeC----cEEEECCeecCCeEEEEECeeeCCCC
Confidence 999999999876 468998875 367777777 88875 45555566678999999999999974
No 2
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.95 E-value=4.8e-28 Score=194.37 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=109.0
Q ss_pred CCHHHHHhcCCChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhc--cHHHHHHhhhhcccccc
Q 025959 36 VNLTGILDKNGQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNL--DNQKQVQLVLYHVTSKF 113 (245)
Q Consensus 36 ~nI~~iL~~~g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~L--s~~~l~~LL~yHVip~~ 113 (245)
.||.++|+++++||+|.++++++|+.+.|++ .++||||||||+||++++.+.++.| ++++++++|+|||+++.
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~ 76 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNR-----EGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI 76 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHS-----SCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcC-----CCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce
Confidence 4899999999999999999999999999987 7899999999999999998877776 56889999999999999
Q ss_pred cchhhhccCCcceeccCCCCceeEEEEEeecceEEEecceeeeeeeeccccCCCeEEEEECcccc
Q 025959 114 YRQSDLLLVSNPVRTLASGQDVWGLNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLL 178 (245)
Q Consensus 114 ~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLl 178 (245)
++.+++... ..++|+.|+ .|.|+.+++.++|++ ++|...++...||+||+||+||+
T Consensus 77 ~~~~~l~~~-~~~~tl~G~----~l~v~~~~~~v~vn~----a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 77 LVSGGIGAL-VRLKSLQGD----KLEVSLKNNVVSVNK----EPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp CCSTTCSSC-EEEEBTTSS----EEEEEEETTEEEESS----CBEEEEEEEETTEEEEEESSCC-
T ss_pred eehhhccCC-ceEecCCCC----EEEEEEeCCEEEEec----cEEEEcceecCCEEEEEECcEeC
Confidence 998888764 478999875 367777788888875 33434445567899999999985
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.95 E-value=5.6e-28 Score=201.10 Aligned_cols=131 Identities=24% Similarity=0.395 Sum_probs=112.9
Q ss_pred CCCCHHHHHhcCCChHHHHHHHH-----HcCchHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhcc--HHHHHHhhh
Q 025959 34 GPVNLTGILDKNGQFTTFIKLLI-----STQVANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNLD--NQKQVQLVL 106 (245)
Q Consensus 34 ~~~nI~~iL~~~g~fS~F~~lL~-----~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~Ls--~~~l~~LL~ 106 (245)
...+|.++|+++++||+|.++|+ ++|+.+.|+. .+ ||||||||+||++++.+.++.|. +++++++|+
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~-----~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~ 99 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNS-----GQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT 99 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-----SS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCC-----CC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHH
Confidence 35799999999999999999999 9999999986 56 99999999999999887788874 478999999
Q ss_pred hcccccccchhhhccCCcceeccCCCCceeEEEEEeecceEEEecceeeeeeeeccccCCCeEEEEECccccCCC
Q 025959 107 YHVTSKFYRQSDLLLVSNPVRTLASGQDVWGLNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLLPEE 181 (245)
Q Consensus 107 yHVip~~~~~s~l~~~s~~v~T~~g~~~~~~LnVt~~g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLlP~~ 181 (245)
|||+++.++.++|. +.++|+.|. .|+|+.+++.++|++ ++|...++...||+||+||+||+|+.
T Consensus 100 yHvv~g~~~~~~l~---g~~~Tl~G~----~l~v~~~~~~v~vn~----a~V~~~di~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 100 YHVVAGQTSPANVV---GTRQTLQGA----SVTVTGQGNSLKVGN----ADVVCGGVSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp HTEEESCCCTTTSC---EEEECTTSS----EEEEEECSSCEEETT----EECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred hceECCEEcHHHhC---CccccCCCC----EEEEEEECCEEEEec----cEEEECceEcCCEEEEEECcEeCCCC
Confidence 99999999999997 479999864 367777777888875 45555566778999999999999974
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.90 E-value=4.3e-24 Score=194.01 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=114.3
Q ss_pred CCCHHHHHhcCCChHHHHHHHHHcCchHHHhhcccCCCCCeEEEecCcHHHHhch----hhhhhhccH---HHHHHhhhh
Q 025959 35 PVNLTGILDKNGQFTTFIKLLISTQVANQIQSQINSSSEGMTVFAPTDNAFNNLE----KGLLNNLDN---QKQVQLVLY 107 (245)
Q Consensus 35 ~~nI~~iL~~~g~fS~F~~lL~~tgl~~~L~~~l~~s~~~~TVFAPTD~AF~~l~----~~~l~~Ls~---~~l~~LL~y 107 (245)
+.++.++|+++++|++|.++++.+|+.++|++ ..++||||||||+||++++ .+.++.|.. ++++++|+|
T Consensus 158 ~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~----~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~y 233 (324)
T 1o70_A 158 YTTVLGKLESDPMMSDTYKMGKFSHFNDQLNN----TQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILER 233 (324)
T ss_dssp CSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC----SSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHT
T ss_pred hhhHHHHhhcCchHHHHHHHHHhhCHHHHhCC----CCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHh
Confidence 46899999999999999999999999888863 3689999999999999985 334555543 489999999
Q ss_pred ccccc--ccchhhhccCCc-----ceeccCCCCceeEEEEEeecceEEEecceeeeeeeeccccCCCeEEEEECccccCC
Q 025959 108 HVTSK--FYRQSDLLLVSN-----PVRTLASGQDVWGLNFTGQGNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVLLPE 180 (245)
Q Consensus 108 HVip~--~~~~s~l~~~s~-----~v~T~~g~~~~~~LnVt~~g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VLlP~ 180 (245)
||+++ .|+.++|.++++ .++|++ + .+.++++.+|+.++|+.+...++|...++...||+||+||+||+|+
T Consensus 234 Hvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~--~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NGvIHvID~VL~P~ 310 (324)
T 1o70_A 234 HLAISDKEYTMKDLVKFSQESGSVILPTFR-D--SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLEE 310 (324)
T ss_dssp TEEEESSCCCHHHHHHHHHHSSSEEEECSS-S--EEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCCT
T ss_pred cEeCCcceEcHHHHhhhccCCCeeeeeccC-C--cEEEEEEecCCEEEEEecCceeEEEEcccccCCCeEEEeceeecCC
Confidence 99998 888899976432 388987 4 3777776678888887444456665556666799999999999999
Q ss_pred CCCCC
Q 025959 181 ELSAA 185 (245)
Q Consensus 181 ~l~~~ 185 (245)
.....
T Consensus 311 ~~~~~ 315 (324)
T 1o70_A 311 KDVVV 315 (324)
T ss_dssp TTTC-
T ss_pred ccccc
Confidence 86543
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.90 E-value=9e-24 Score=191.87 Aligned_cols=139 Identities=22% Similarity=0.310 Sum_probs=106.5
Q ss_pred CCCCHHHHHh------cCCChHHHHHHHHHcC--chHHHhhcccCCCCCeEEEecCcHHHHhchhhhhhhc--cHHHHHH
Q 025959 34 GPVNLTGILD------KNGQFTTFIKLLISTQ--VANQIQSQINSSSEGMTVFAPTDNAFNNLEKGLLNNL--DNQKQVQ 103 (245)
Q Consensus 34 ~~~nI~~iL~------~~g~fS~F~~lL~~tg--l~~~L~~~l~~s~~~~TVFAPTD~AF~~l~~~~l~~L--s~~~l~~ 103 (245)
...||+++|+ +.++||+|.++|+++| +.+.|++ .++||||||+|+||+++. ++.| +++.+++
T Consensus 4 ~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~-----~~~~TvFAPtn~Af~~~~---~~~l~~~~~~l~~ 75 (324)
T 1o70_A 4 ADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSN---INNVLRDRNKMRQ 75 (324)
T ss_dssp ---------------CCHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTC---THHHHTCHHHHHH
T ss_pred ehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcC-----CCCeEEEEEChHhhhccc---HhhhhCCHHHHHH
Confidence 4678999998 6789999999999999 9999987 789999999999998763 3444 5688999
Q ss_pred hhhhcccccccchhhhccCCc----ceeccCCCCceeEEEEEee--cceEEEecceeeeeeeeccccCCCeEEEEECccc
Q 025959 104 LVLYHVTSKFYRQSDLLLVSN----PVRTLASGQDVWGLNFTGQ--GNQVNVSSGVVETPINSVLRQNFPLAVYQVDKVL 177 (245)
Q Consensus 104 LL~yHVip~~~~~s~l~~~s~----~v~T~~g~~~~~~LnVt~~--g~~V~v~~gvv~a~V~n~~~~~~ngvIhvID~VL 177 (245)
+|+|||++++++.++|..+.+ .++|+.|+. .++++++.+ +..+++++|.++++|...++...||+||+||+||
T Consensus 76 iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~-~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL 154 (324)
T 1o70_A 76 ILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNT-FLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVL 154 (324)
T ss_dssp HHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTC-EEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCT
T ss_pred HHHhcEeCCeecHHHHhhccCCCceEEEcCCCCc-eEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhh
Confidence 999999999999999986532 689998764 256777653 3468887766677887777788899999999999
Q ss_pred cCCC
Q 025959 178 LPEE 181 (245)
Q Consensus 178 lP~~ 181 (245)
.|+.
T Consensus 155 ~pp~ 158 (324)
T 1o70_A 155 GVPY 158 (324)
T ss_dssp TSCC
T ss_pred hhch
Confidence 9864
No 6
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=21.39 E-value=34 Score=22.22 Aligned_cols=9 Identities=56% Similarity=0.578 Sum_probs=8.3
Q ss_pred chhhHHHHH
Q 025959 5 SASHILLTL 13 (245)
Q Consensus 5 ~~~~~~~~~ 13 (245)
++|+|||+|
T Consensus 24 saSdiLRRl 32 (50)
T 1xrx_A 24 SASDILRRM 32 (50)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 689999998
No 7
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=19.01 E-value=33 Score=25.67 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.2
Q ss_pred cccCCCeEEEEECcccc
Q 025959 162 LRQNFPLAVYQVDKVLL 178 (245)
Q Consensus 162 ~~~~~ngvIhvID~VLl 178 (245)
.++.-+|+||.||.|.-
T Consensus 68 ~IE~~GgvIHSIDEVva 84 (100)
T 3bpd_A 68 VIEDMGGVIHSVDEVVA 84 (100)
T ss_dssp HHHTTTCEEEEEEEEEE
T ss_pred HHHHcCCeEEeeeeeee
Confidence 34566789999998854
No 8
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=16.62 E-value=30 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=14.4
Q ss_pred ccCCCeEEEEECccccCCCC
Q 025959 163 RQNFPLAVYQVDKVLLPEEL 182 (245)
Q Consensus 163 ~~~~ngvIhvID~VLlP~~l 182 (245)
+...+|+||.||.|.-=..+
T Consensus 69 IE~~Gg~IHSIDEVvaG~~i 88 (97)
T 2raq_A 69 IESYGGSIHSVDEVVAGRTM 88 (97)
T ss_dssp HHHTTCEEEEEEEEEEESSC
T ss_pred HHHcCCeEEeeeeeeeccee
Confidence 44567899999988654443
No 9
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=15.43 E-value=32 Score=25.54 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=12.4
Q ss_pred ccCCCeEEEEECcccc
Q 025959 163 RQNFPLAVYQVDKVLL 178 (245)
Q Consensus 163 ~~~~ngvIhvID~VLl 178 (245)
+...+|+||.||.|.-
T Consensus 68 IE~~Gg~IHSIDEVva 83 (96)
T 2x3d_A 68 LEEEGCAIHSIDEVVS 83 (96)
T ss_dssp HHHTTCEEEEEEEEEE
T ss_pred HHHcCCeEEeeeeeee
Confidence 4456789999998854
No 10
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=12.86 E-value=1.1e+02 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.8
Q ss_pred EEecCcHHHHhchh
Q 025959 77 VFAPTDNAFNNLEK 90 (245)
Q Consensus 77 VFAPTD~AF~~l~~ 90 (245)
.|.|.++|++.++.
T Consensus 40 fFWPr~DAWe~LK~ 53 (116)
T 2kt9_A 40 FFWPRADAWQQLKD 53 (116)
T ss_dssp EEETTSCHHHHHHH
T ss_pred eeCCCccHHHHHHH
Confidence 69999999999975
Done!