BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025961
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
V+V HPLI+H ++ +R++ T FR + E+ L+ +E +RD LP EI++P+ A
Sbjct: 4 VYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRD-LPLEEVEIETPVSKA 62
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
+ I ++ + VIPILRAG+ +V+ ++PA K H+G
Sbjct: 63 RAKVIAGKK-LGVIPILRAGIGMVDGILKLIPAAKVGHIG 101
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183
HPLIKH V+ R + T R + ELG +L+YEA +D L E+++ +G ++
Sbjct: 7 HPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLE-EKEVRTWIGNKRFNYL 65
Query: 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
+ E + +PILRAGL +E A ++P K LG
Sbjct: 66 N-EEEIVFVPILRAGLSFLEGALQVVPNAKVGFLG 99
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+ V HPLIKH ++I+R++ T FR + E+ LL YEA+R L E+++P+
Sbjct: 16 LVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATR-HLKCEEVEVETPI-TK 73
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
++ + + + V+PILRAGLV+ + +LP H+G
Sbjct: 74 TIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIG 113
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183
HPL++H ++ LR+++T FR E+ L YEA RD L +++P+ A V+ +
Sbjct: 8 HPLVQHKLAHLRDKRTGPKDFRELAEEVAXLXAYEAXRD-LELEETTVETPIAPARVKVL 66
Query: 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
++ +A++ ILRAGLV VE ++P + H+G
Sbjct: 67 SGKK-LALVAILRAGLVXVEGILKLVPHARVGHIG 100
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+F+ HPLI+H ++ +R++ T FR + E+ L+ YE +R+ LP + +++P+
Sbjct: 11 LFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRN-LPITTKRVETPLVEI 69
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
I ++ +A++P+LRAG+ + + ++P+ + H+G
Sbjct: 70 DAPVIAGKK-LAIVPVLRAGVGMSDGLLELIPSARVGHIG 108
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183
HPL+KH + ++R + FR +E+G LL YEA+ D L T I+ G ++ I
Sbjct: 8 HPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATAD-LETEKVTIEGWNGPVEIDQI 66
Query: 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
++ + V+PILRAGL +++ +P+ + +G
Sbjct: 67 KGKK-ITVVPILRAGLGMMDGVLENVPSARISVVG 100
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M ++V P+ H ++ LR++ T FR + LGR+L YE S + L E+++P+G
Sbjct: 1 MPLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEIS-NTLDYEIVEVETPLG 59
Query: 177 VAS--VEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
V + V+ D + +I ILRA + LVE P + +G
Sbjct: 60 VKTKGVDITDLNN-IVIINILRAAVPLVEGLLKAFPKARQGVIG 102
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 104 HMATEEKSISGDRMLVFVPPHPLIKHWVSILRNEQTP 140
H ATEEK++ R + + +HW + L TP
Sbjct: 835 HFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTP 871
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,442,735
Number of Sequences: 62578
Number of extensions: 224431
Number of successful extensions: 514
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 8
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)