Query 025961
Match_columns 245
No_of_seqs 121 out of 1053
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 11:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0035 Upp Uracil phosphoribo 100.0 1.9E-32 4.2E-37 241.5 13.2 111 117-229 2-112 (210)
2 PLN02541 uracil phosphoribosyl 100.0 5.3E-32 1.1E-36 242.4 15.1 125 104-228 19-143 (244)
3 PF14681 UPRTase: Uracil phosp 100.0 2.1E-29 4.6E-34 218.0 12.5 106 121-226 1-106 (207)
4 TIGR01091 upp uracil phosphori 99.9 1.6E-27 3.6E-32 206.3 13.4 106 118-225 1-106 (207)
5 PRK00129 upp uracil phosphorib 99.9 3.2E-27 7E-32 204.4 13.5 107 117-225 2-108 (209)
6 KOG1017 Predicted uracil phosp 99.8 4.9E-20 1.1E-24 164.2 6.9 107 119-228 68-176 (267)
7 KOG4203 Armadillo/beta-Catenin 99.3 8.9E-13 1.9E-17 128.1 3.6 104 121-227 269-373 (473)
8 TIGR01203 HGPRTase hypoxanthin 94.0 0.25 5.4E-06 41.8 7.4 35 188-222 27-62 (166)
9 PLN02369 ribose-phosphate pyro 85.6 1.3 2.8E-05 41.3 4.7 37 187-223 151-187 (302)
10 PRK05205 bifunctional pyrimidi 81.8 6.4 0.00014 33.3 7.0 36 188-223 32-74 (176)
11 PRK15423 hypoxanthine phosphor 66.6 56 0.0012 28.3 9.0 61 140-223 10-71 (178)
12 PF15152 Kisspeptin: Kisspepti 66.2 2.1 4.6E-05 33.5 0.2 30 207-237 48-77 (78)
13 PTZ00271 hypoxanthine-guanine 59.9 47 0.001 29.8 7.6 64 140-222 29-96 (211)
14 PLN02238 hypoxanthine phosphor 42.7 1.2E+02 0.0025 26.4 7.1 34 189-222 37-74 (189)
15 PF12852 Cupin_6: Cupin 31.4 74 0.0016 26.5 4.0 43 122-164 142-185 (186)
16 PF04444 Dioxygenase_N: Catech 29.1 86 0.0019 23.9 3.7 31 124-154 9-39 (74)
17 PRK09162 hypoxanthine-guanine 27.6 3.3E+02 0.0071 23.2 7.4 61 138-223 16-77 (181)
18 cd00606 fungal_RNase fungal ty 24.8 38 0.00081 27.6 1.1 18 4-21 51-69 (100)
19 PF00156 Pribosyltran: Phospho 23.5 1.3E+02 0.0028 22.8 3.8 22 191-212 31-52 (125)
20 PTZ00149 hypoxanthine phosphor 23.1 1.6E+02 0.0034 27.1 4.8 37 187-223 81-130 (241)
21 smart00002 PLP Myelin proteoli 20.8 37 0.00079 25.4 0.2 9 2-10 31-39 (60)
22 PRK03092 ribose-phosphate pyro 20.5 1.6E+02 0.0035 27.5 4.5 38 187-224 148-185 (304)
No 1
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.98 E-value=1.9e-32 Score=241.48 Aligned_cols=111 Identities=39% Similarity=0.592 Sum_probs=105.8
Q ss_pred eEEEecCchhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeec
Q 025961 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILR 196 (245)
Q Consensus 117 M~I~VldHPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILR 196 (245)
|++++++||+++|++|+|||++|++.+||++++||+++|+|||+++ +|+++++|+||++++++..+.+ +++|+|||||
T Consensus 2 ~~v~vi~hpli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~-l~~e~~~ieTP~~~~~~~~~~~-~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVIDHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRD-LPLEKVEIETPLGPTEGVQIAG-KKIVIVPILR 79 (210)
T ss_pred CceEEeCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCc-CceeEEEEECCCcceeeeeecC-CcEEEEEEee
Confidence 5789999999999999999999999999999999999999999999 9999999999999999999975 5599999999
Q ss_pred cchhHHHHHHhhcCCCceeeEEEEeeeccceec
Q 025961 197 AGLVLVEHASSILPAIKTYHLGKVVLMHACIVD 229 (245)
Q Consensus 197 AGL~MleG~l~v~P~A~VGhIGIqRd~~~~~~~ 229 (245)
||++|++|+++++|+|++||||+|||++.....
T Consensus 80 AGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~ 112 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHIGIYRDEETLEPV 112 (210)
T ss_pred ccccHHHHHHHhCCcceEEEEEEEecCccCcee
Confidence 999999999999999999999999999987754
No 2
>PLN02541 uracil phosphoribosyltransferase
Probab=99.98 E-value=5.3e-32 Score=242.37 Aligned_cols=125 Identities=73% Similarity=1.158 Sum_probs=111.9
Q ss_pred ccccccccCCCCceEEEecCchhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEe
Q 025961 104 HMATEEKSISGDRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFI 183 (245)
Q Consensus 104 ~~~~~~~~~~~~~M~I~VldHPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l 183 (245)
.+|+++++....+|.+++.+||+++|++|+|||++|++.+||+|++||+++|+|||+++|+|+++++|+||+|.+++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~~~~~~~ 98 (244)
T PLN02541 19 AAASEPSPKAPQQMLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGVADVEFI 98 (244)
T ss_pred ccccCCCCcccccceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCeEEEEee
Confidence 45666666666678888889999999999999999999999999999999999999999999999999999998777777
Q ss_pred cCCCCeEEEeeeccchhHHHHHHhhcCCCceeeEEEEeeecccee
Q 025961 184 DPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGKVVLMHACIV 228 (245)
Q Consensus 184 ~~~k~I~iVPILRAGL~MleG~l~v~P~A~VGhIGIqRd~~~~~~ 228 (245)
...+++|+|||||||++|++|++++||+|++|||++|||++....
T Consensus 99 ~~~~~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~ 143 (244)
T PLN02541 99 DPREPVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQP 143 (244)
T ss_pred cCCCcEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccce
Confidence 644569999999999999999999999999999999999765443
No 3
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=99.96 E-value=2.1e-29 Score=218.03 Aligned_cols=106 Identities=36% Similarity=0.616 Sum_probs=93.6
Q ss_pred ecCchhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeeccchh
Q 025961 121 VPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLV 200 (245)
Q Consensus 121 VldHPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILRAGL~ 200 (245)
|++||++++++|+|||++|+..+||+|++||+++|+|||+++|+|+++++|+||+|.+.+..+..++++|+|||||||++
T Consensus 1 V~~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~ 80 (207)
T PF14681_consen 1 VPQHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGLP 80 (207)
T ss_dssp EEB-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHHH
T ss_pred CCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcHH
Confidence 57899999999999999999999999999999999999999889999999999999754445543458999999999999
Q ss_pred HHHHHHhhcCCCceeeEEEEeeeccc
Q 025961 201 LVEHASSILPAIKTYHLGKVVLMHAC 226 (245)
Q Consensus 201 MleG~l~v~P~A~VGhIGIqRd~~~~ 226 (245)
|++||+++||+|++|||++|||++..
T Consensus 81 m~~~~~~~~p~a~~g~i~i~r~~~t~ 106 (207)
T PF14681_consen 81 MLEGFREVFPDARVGHIGIQRDEETL 106 (207)
T ss_dssp HHHHHHHHSTTSEEEEEEEEEETTTS
T ss_pred HHHHHHHhCCCcceEEEEEEEcCCcc
Confidence 99999999999999999999998764
No 4
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.95 E-value=1.6e-27 Score=206.29 Aligned_cols=106 Identities=39% Similarity=0.605 Sum_probs=99.7
Q ss_pred EEEecCchhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeecc
Q 025961 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRA 197 (245)
Q Consensus 118 ~I~VldHPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILRA 197 (245)
++++++||++++++|+|||++|++.+||+|++||+++|+|||+++ +|+++++|+||+|.+.|..+.+ +++|+|+||||
T Consensus 1 ~v~~~~~p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~-l~~~~~~v~tp~g~~~~~~~~~-~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVIEHPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRD-LELEEVEVETPLGETEGGRILG-KKIVLVPILRA 78 (207)
T ss_pred CeEecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCceeEEEECCCCcEEEeEecC-CcEEEEEEeCC
Confidence 478899999999999999999999999999999999999999997 9999999999999888888864 56999999999
Q ss_pred chhHHHHHHhhcCCCceeeEEEEeeecc
Q 025961 198 GLVLVEHASSILPAIKTYHLGKVVLMHA 225 (245)
Q Consensus 198 GL~MleG~l~v~P~A~VGhIGIqRd~~~ 225 (245)
|++|++++++++|.+++||+++||+.+.
T Consensus 79 g~~~~~~l~~~l~~~~v~~i~~~r~~~t 106 (207)
T TIGR01091 79 GLGMVDGVLKLIPEAKVGHVGAYRNEET 106 (207)
T ss_pred cHHHHHHHHHhCCcCceeEEEEEeCCCC
Confidence 9999999999999999999999998643
No 5
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.95 E-value=3.2e-27 Score=204.43 Aligned_cols=107 Identities=39% Similarity=0.646 Sum_probs=101.5
Q ss_pred eEEEecCchhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeec
Q 025961 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILR 196 (245)
Q Consensus 117 M~I~VldHPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILR 196 (245)
|++|+++||++++++|+|||++|+..+||+|++||+++|+|||+++ +|+++++|+||+|.+.|..+.. +++|+|+|||
T Consensus 2 ~~v~~~~~p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~-l~~~~~~v~tp~g~~~g~~~~~-~~~vvV~Ilr 79 (209)
T PRK00129 2 MKVHVVDHPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRD-LPLEEVEIETPLGKTTGKRIAG-KKLVIVPILR 79 (209)
T ss_pred CceEecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcc-cceeEEEEECCCCcEEEEEecC-CeEEEEEEeC
Confidence 6799999999999999999999999999999999999999999999 9999999999999888888864 5799999999
Q ss_pred cchhHHHHHHhhcCCCceeeEEEEeeecc
Q 025961 197 AGLVLVEHASSILPAIKTYHLGKVVLMHA 225 (245)
Q Consensus 197 AGL~MleG~l~v~P~A~VGhIGIqRd~~~ 225 (245)
||++|++++++++|.+++|+|++||+.+-
T Consensus 80 gG~~~~~~l~~~l~~~~~~~i~~~r~~~t 108 (209)
T PRK00129 80 AGLGMVDGVLKLIPSARVGHIGLYRDEET 108 (209)
T ss_pred CCHHHHHHHHHhCCcCeeeeEEEEeCCCC
Confidence 99999999999999999999999998543
No 6
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=99.80 E-value=4.9e-20 Score=164.16 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=98.0
Q ss_pred EEecC-chhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCe-eeEEEEecCCCCeEEEeeec
Q 025961 119 VFVPP-HPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG-VASVEFIDPREPVAVIPILR 196 (245)
Q Consensus 119 I~Vld-HPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG-~t~G~~l~~~k~I~iVPILR 196 (245)
++.+. +.++..++|+||||+|++.||.|+.|||.|+.++|.+++ |||.+.+|+||.| +|+|.+.. +.-|+|+|+|
T Consensus 68 lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNq-LPytec~VtTPTG~kYEGikf~--~GNCGVSi~R 144 (267)
T KOG1017|consen 68 LKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQ-LPYTECTVTTPTGFKYEGIKFN--RGNCGVSICR 144 (267)
T ss_pred cchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhc-CCccceeeecCCcceeeceeec--CCCcceEEEe
Confidence 45554 889999999999999999999999999999999999999 9999999999999 58999886 4579999999
Q ss_pred cchhHHHHHHhhcCCCceeeEEEEeeecccee
Q 025961 197 AGLVLVEHASSILPAIKTYHLGKVVLMHACIV 228 (245)
Q Consensus 197 AGL~MleG~l~v~P~A~VGhIGIqRd~~~~~~ 228 (245)
+|++|++|+++++..+++|+|+|+-|++.-++
T Consensus 145 SGEAMEqgLRdCCRsIRIGKILi~sd~~t~~a 176 (267)
T KOG1017|consen 145 SGEAMEQGLRDCCRSIRIGKILIGSDQNTHEA 176 (267)
T ss_pred chHHHHHHHHHHHHHheeeeEEecccccccee
Confidence 99999999999999999999999999855443
No 7
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.31 E-value=8.9e-13 Score=128.05 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=96.0
Q ss_pred ecCchhHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCee-eEEEEecCCCCeEEEeeeccch
Q 025961 121 VPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV-ASVEFIDPREPVAVIPILRAGL 199 (245)
Q Consensus 121 VldHPLVkh~LTiLRDk~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~-t~G~~l~~~k~I~iVPILRAGL 199 (245)
+.++++++++++.+||++|++.+|.++.+++++++.++++.. +|+.+..|.||.|. +.+.... .++|+|+|+|||.
T Consensus 269 l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~-~p~~~~~i~~~~~~~~~~~~~~--~~i~gv~i~r~g~ 345 (473)
T KOG4203|consen 269 LPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGH-LPYTEKRIVTPRGLAYSGVNFC--KQICGVSIPRSGE 345 (473)
T ss_pred cCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCc-ccceeeeEecccccchhccccc--chhccCCCCcchh
Confidence 447999999999999999999999999999999999999998 79999999999995 6666554 5799999999999
Q ss_pred hHHHHHHhhcCCCceeeEEEEeeeccce
Q 025961 200 VLVEHASSILPAIKTYHLGKVVLMHACI 227 (245)
Q Consensus 200 ~MleG~l~v~P~A~VGhIGIqRd~~~~~ 227 (245)
.|+.++++.++++++|+|++||+++-+.
T Consensus 346 ~~~~alr~~~~~vri~~il~qr~~~t~~ 373 (473)
T KOG4203|consen 346 SMETALRAACKGVRIGKILIQRDEETGE 373 (473)
T ss_pred HHHHHHHHHcCCceeeeeEeechhhccc
Confidence 9999999999999999999999998765
No 8
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=93.99 E-value=0.25 Score=41.82 Aligned_cols=35 Identities=6% Similarity=0.242 Sum_probs=31.2
Q ss_pred CeEEEeeeccchhHHHHHHhhcC-CCceeeEEEEee
Q 025961 188 PVAVIPILRAGLVLVEHASSILP-AIKTYHLGKVVL 222 (245)
Q Consensus 188 ~I~iVPILRAGL~MleG~l~v~P-~A~VGhIGIqRd 222 (245)
++++|+|+|+|+.|...+.+.++ .+.++++.+.+.
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y 62 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSY 62 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeec
Confidence 47899999999999999999998 578999998843
No 9
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=85.62 E-value=1.3 Score=41.29 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=34.2
Q ss_pred CCeEEEeeeccchhHHHHHHhhcCCCceeeEEEEeee
Q 025961 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGKVVLM 223 (245)
Q Consensus 187 k~I~iVPILRAGL~MleG~l~v~P~A~VGhIGIqRd~ 223 (245)
+++++|++.++|..+++++.+.+++++++++..+|+.
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~ 187 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG 187 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCC
Confidence 3589999999999999999999999999999999964
No 10
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=81.82 E-value=6.4 Score=33.35 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=28.9
Q ss_pred CeEEEeeeccchhHHHHHHhhcCC-----CceeeEEE--Eeee
Q 025961 188 PVAVIPILRAGLVLVEHASSILPA-----IKTYHLGK--VVLM 223 (245)
Q Consensus 188 ~I~iVPILRAGL~MleG~l~v~P~-----A~VGhIGI--qRd~ 223 (245)
++++|.|+|+|..+...+.+.++. +.++++-+ ||+.
T Consensus 32 ~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~ 74 (176)
T PRK05205 32 NLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDD 74 (176)
T ss_pred CeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecC
Confidence 478999999999999999999974 34888654 5653
No 11
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=66.60 E-value=56 Score=28.26 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeeccchhHHHHHHhhcCC-CceeeEE
Q 025961 140 PCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPA-IKTYHLG 218 (245)
Q Consensus 140 ~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILRAGL~MleG~l~v~P~-A~VGhIG 218 (245)
+..++...+++|+.-+.+.- ++ ..+++++|.|+|+|..++.-+.+.+.- ..++++-
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~-~~----------------------~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~ 66 (178)
T PRK15423 10 PEAEIKARIAELGRQITERY-KD----------------------SGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMT 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHh-cc----------------------cCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEE
Confidence 34577778888877776522 11 013478999999999999999999974 5788888
Q ss_pred EEeee
Q 025961 219 KVVLM 223 (245)
Q Consensus 219 IqRd~ 223 (245)
+.+..
T Consensus 67 ~ssY~ 71 (178)
T PRK15423 67 ASSYG 71 (178)
T ss_pred EEEec
Confidence 87764
No 12
>PF15152 Kisspeptin: Kisspeptin
Probab=66.23 E-value=2.1 Score=33.49 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=26.0
Q ss_pred hhcCCCceeeEEEEeeeccceeccceeeeeE
Q 025961 207 SILPAIKTYHLGKVVLMHACIVDEVSLGLRF 237 (245)
Q Consensus 207 ~v~P~A~VGhIGIqRd~~~~~~~~~~~~~~~ 237 (245)
+++| |+-|-++|||||+----.=-||||||
T Consensus 48 r~ip-ap~g~~lVqRekdls~YNwNSFGLRY 77 (78)
T PF15152_consen 48 RLIP-APRGAVLVQREKDLSAYNWNSFGLRY 77 (78)
T ss_pred eecc-CCccchhhheeccccccccccccccc
Confidence 3455 88899999999999888889999997
No 13
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=59.94 E-value=47 Score=29.75 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeeccchhHHHHHHhhcC----CCcee
Q 025961 140 PCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILP----AIKTY 215 (245)
Q Consensus 140 ~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILRAGL~MleG~l~v~P----~A~VG 215 (245)
+..++...+++|+..+.+.- +. +. +.+++++++|.|||+|..|..-+.+.+. .+.++
T Consensus 29 s~e~I~~~i~~LA~~I~~~~-~~-~~-----------------~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vd 89 (211)
T PTZ00271 29 TQEQVWAATAKCAKKIAEDY-RS-FK-----------------LTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVE 89 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHh-hh-cc-----------------ccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEE
Confidence 55677788888888876532 22 10 1112467899999999999999977773 35788
Q ss_pred eEEEEee
Q 025961 216 HLGKVVL 222 (245)
Q Consensus 216 hIGIqRd 222 (245)
+|-+.+.
T Consensus 90 fi~vssY 96 (211)
T PTZ00271 90 FICASSY 96 (211)
T ss_pred EEEEEec
Confidence 8877665
No 14
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=42.71 E-value=1.2e+02 Score=26.42 Aligned_cols=34 Identities=3% Similarity=0.125 Sum_probs=26.3
Q ss_pred eEEEeeeccchhHHHHHHhhcCC----CceeeEEEEee
Q 025961 189 VAVIPILRAGLVLVEHASSILPA----IKTYHLGKVVL 222 (245)
Q Consensus 189 I~iVPILRAGL~MleG~l~v~P~----A~VGhIGIqRd 222 (245)
.++|.|+|+|..+...+.+.+.- ..+.++-+.+.
T Consensus 37 ~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy 74 (189)
T PLN02238 37 PVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSY 74 (189)
T ss_pred cEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeec
Confidence 57999999999999999998863 45556655444
No 15
>PF12852 Cupin_6: Cupin
Probab=31.45 E-value=74 Score=26.48 Aligned_cols=43 Identities=33% Similarity=0.591 Sum_probs=36.8
Q ss_pred cCchhHHHHHHhhhcC-CCCchHHHHHHHHHHHHHHHHHhcCCC
Q 025961 122 PPHPLIKHWVSILRNE-QTPCPIFRNAMAELGRLLMYEASRDWL 164 (245)
Q Consensus 122 ldHPLVkh~LTiLRDk-~T~~~dFR~~vdrIgrLLayEAl~~~L 164 (245)
...+.+..++..|+++ ..+..=....+++|+.+|..++++.|+
T Consensus 142 ~~~~~L~~~l~~l~~E~~~~~~G~~~v~~rL~e~Llv~~LR~~l 185 (186)
T PF12852_consen 142 AAAPWLAALLALLRSESAQPRPGSDAVLDRLAELLLVEALRHWL 185 (186)
T ss_pred CCchhHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3588999999999887 456678889999999999999999864
No 16
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=29.10 E-value=86 Score=23.92 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=25.5
Q ss_pred chhHHHHHHhhhcCCCCchHHHHHHHHHHHH
Q 025961 124 HPLIKHWVSILRNEQTPCPIFRNAMAELGRL 154 (245)
Q Consensus 124 HPLVkh~LTiLRDk~T~~~dFR~~vdrIgrL 154 (245)
+-+++|+...+|+.+-..++|+.+++-|.+.
T Consensus 9 ~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~ 39 (74)
T PF04444_consen 9 ARLVRHLHDFIREVDLTEDEWWAAVDFLNRV 39 (74)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999998877664
No 17
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=27.64 E-value=3.3e+02 Score=23.22 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCceeeeEecCCeeeEEEEecCCCCeEEEeeeccchhHHHHHHhhcCC-Cceee
Q 025961 138 QTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPA-IKTYH 216 (245)
Q Consensus 138 ~T~~~dFR~~vdrIgrLLayEAl~~~Lp~eeveVeTPlG~t~G~~l~~~k~I~iVPILRAGL~MleG~l~v~P~-A~VGh 216 (245)
--+-.+|...+++|+..+... +. .++.++|+|+++|..+...+.+.+-- ..++.
T Consensus 16 ~~s~~~i~~~i~~la~~i~~~-----~~--------------------~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~ 70 (181)
T PRK09162 16 LVSAAEVEAAIDRMADEITAD-----LA--------------------DENPLVLCVMGGGLVFTGQLLPRLDFPLEFDY 70 (181)
T ss_pred eecHHHHHHHHHHHHHHHHHH-----cC--------------------CCCeEEEEECCCcHHHHHHHHHHcCCCcccCE
Confidence 344557777777777776553 11 02357899999999999999998863 34555
Q ss_pred EEEEeee
Q 025961 217 LGKVVLM 223 (245)
Q Consensus 217 IGIqRd~ 223 (245)
+-..|..
T Consensus 71 l~~~~~~ 77 (181)
T PRK09162 71 LHATRYR 77 (181)
T ss_pred EEEEecC
Confidence 5555543
No 18
>cd00606 fungal_RNase fungal type ribonuclease. Ribonucleases (RNAses) cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. The members of this CD belong to the superfamily of microbial ribonucleases which are predominantly guanyl specific nucleases. Guanyl specific RNAses are endonucleases which split RNA phosphodiester bonds at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate. The alignment also contains ribotoxins, a fungal group of cytotoxins, specifically cleaving the sarcin/ricin loop (SRL) structure of the 23-28S rRNA and therefore being very potent inhibitors of protein synthesis.
Probab=24.84 E-value=38 Score=27.60 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=12.8
Q ss_pred CCCcccccc-cCCccccCC
Q 025961 4 PWNEYPILS-HGNHISQTP 21 (245)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~ 21 (245)
||-||||+. ++--..+.|
T Consensus 51 ~~~EfPi~~~g~~Y~ggsP 69 (100)
T cd00606 51 PYYEFPIFSDGHVYTGGSP 69 (100)
T ss_pred ceEEEeEecCCCeecCCCC
Confidence 899999999 544444444
No 19
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=23.45 E-value=1.3e+02 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEeeeccchhHHHHHHhhcCCC
Q 025961 191 VIPILRAGLVLVEHASSILPAI 212 (245)
Q Consensus 191 iVPILRAGL~MleG~l~v~P~A 212 (245)
+|+|.|+|.++...+.+.+.-.
T Consensus 31 ivgi~~~G~~~a~~la~~l~~~ 52 (125)
T PF00156_consen 31 IVGIPRGGIPLAAALARALGIP 52 (125)
T ss_dssp EEEETTTTHHHHHHHHHHHTHE
T ss_pred EEeehhccHHHHHHHHHHhCCC
Confidence 8999999999999999999863
No 20
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=23.06 E-value=1.6e+02 Score=27.12 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.7
Q ss_pred CCeEEEeeeccchhHHHHHHhhcCC----------Cce---eeEEEEeee
Q 025961 187 EPVAVIPILRAGLVLVEHASSILPA----------IKT---YHLGKVVLM 223 (245)
Q Consensus 187 k~I~iVPILRAGL~MleG~l~v~P~----------A~V---GhIGIqRd~ 223 (245)
+++++|.||++|..|..-+.+.+.. ..+ ++|-+.+..
T Consensus 81 ~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~ 130 (241)
T PTZ00149 81 EELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYC 130 (241)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEcc
Confidence 4578999999999999888887762 334 888887664
No 21
>smart00002 PLP Myelin proteolipid protein (PLP or lipophilin).
Probab=20.78 E-value=37 Score=25.37 Aligned_cols=9 Identities=67% Similarity=1.545 Sum_probs=6.9
Q ss_pred CCCCCcccc
Q 025961 2 ILPWNEYPI 10 (245)
Q Consensus 2 ~~~~~~~~~ 10 (245)
|||||+.|-
T Consensus 31 ilpwna~pg 39 (60)
T smart00002 31 ILPWNAFPG 39 (60)
T ss_pred eeecCCCCC
Confidence 679998773
No 22
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.54 E-value=1.6e+02 Score=27.49 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=33.9
Q ss_pred CCeEEEeeeccchhHHHHHHhhcCCCceeeEEEEeeec
Q 025961 187 EPVAVIPILRAGLVLVEHASSILPAIKTYHLGKVVLMH 224 (245)
Q Consensus 187 k~I~iVPILRAGL~MleG~l~v~P~A~VGhIGIqRd~~ 224 (245)
+++++|.+..+|..+...+.+.+++++++++..+|+..
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~ 185 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPT 185 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccC
Confidence 35789999999999999999999988999999999754
Done!