RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025961
(245 letters)
>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
Length = 244
Score = 225 bits (575), Expect = 3e-74
Identities = 94/132 (71%), Positives = 110/132 (83%), Gaps = 2/132 (1%)
Query: 91 SYTPRRSYVTVRSH--MATEEKSISGDRMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAM 148
S + R + S A+E + +MLVFVPPHPLIKHW+S+LRNEQTP PIFR+AM
Sbjct: 4 SRSSRLTRTVRASADAAASEPSPKAPQQMLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAM 63
Query: 149 AELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSI 208
AELGRLL+YEASRDWLPT++GE+Q+PMGVA VEFIDPREPVAV+PILRAGLVL+EHASS+
Sbjct: 64 AELGRLLIYEASRDWLPTMTGEVQTPMGVADVEFIDPREPVAVVPILRAGLVLLEHASSV 123
Query: 209 LPAIKTYHLGKV 220
LPA KTYHLG V
Sbjct: 124 LPATKTYHLGFV 135
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 116 bits (294), Expect = 2e-32
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 116 RMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPM 175
M V V HPLI+H +++LR++ T FR + ELGRLL YEA+RD LP EI++P+
Sbjct: 1 MMKVHVVDHPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRD-LPLEEVEIETPL 59
Query: 176 GVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
G + + I + + ++PILRAGL +V+ ++P+ + H+G
Sbjct: 60 GKTTGKRIA-GKKLVIVPILRAGLGMVDGVLKLIPSARVGHIG 101
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 104 bits (263), Expect = 1e-27
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Query: 116 RMLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPM 175
M V+V HPL+KH ++ILR++ T FR + E+GRLL YEA+RD LP EI++P+
Sbjct: 1 MMNVYVIDHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRD-LPLEKVEIETPL 59
Query: 176 GVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
G I ++ V V PILRAGL +VE ++P+ + H+G
Sbjct: 60 GPTEGVQIAGKKIVIV-PILRAGLGMVEGLLKLIPSARVGHIG 101
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 103 bits (260), Expect = 2e-27
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
V V HPLIKH +++LR++ T FR + ELGRLL YEA+RD L E+++P+G
Sbjct: 2 VVVIEHPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRD-LELEEVEVETPLGET 60
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
I + + ++PILRAGL +V+ ++P K H+G
Sbjct: 61 EGGRILGK-KIVLVPILRAGLGMVDGVLKLIPEAKVGHVG 99
>gnl|CDD|220967 pfam11073, NSs, Rift valley fever virus non structural protein
(NSs) like. This family contains several Phlebovirus
non structural proteins which act as a major determinant
of virulence by antagonising interferon beta gene
expression.
Length = 238
Score = 32.7 bits (75), Expect = 0.11
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 137 EQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFID 184
+ F + +L R + R LP + + P+G S+EF +
Sbjct: 73 TKPSTKFFDGTIEDLSRFDIESFLRSCLPNIKKALSWPLGYPSLEFFE 120
>gnl|CDD|163655 cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and
related proteins, N-terminal metallophosphatase domain.
YhcR is a Bacillus subtilis sugar-nonspecific
endonuclease. It cleaves endonucleolytically to yield
nucleotide 3'-monophosphate products, similar to
Staphylococcus aureus micrococcal nuclease. YhcR appears
to be located in the cell wall, and is thought to be a
substrate for a Bacillus subtilis sortase. YhcR is the
major calcium-activated nuclease of B. subtilis. The
N-terminal metallophosphatase domain belongs to a large
superfamily of distantly related metallophosphatases
(MPPs) that includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 288
Score = 32.7 bits (75), Expect = 0.15
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 17/57 (29%)
Query: 169 GEIQSPMGVASVEFIDPREPV-AVIPILRAGLVLVEHASSILPAIKTYHLGKVVLMH 224
+ SP GVA +EF D E + AV P L+AG V AI VVL H
Sbjct: 160 PNLVSPDGVAGLEFTDEVEAINAVAPELKAGGV---------DAI-------VVLAH 200
>gnl|CDD|226823 COG4388, COG4388, Mu-like prophage I protein [General function
prediction only].
Length = 357
Score = 31.0 bits (70), Expect = 0.46
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 152 GRLLMYEASRDWLPTVSGEIQSPMGVASVE-FIDPREPVAVIPILRAGLVLVEHASSILP 210
GRLL A ++ + + GVA++ ID R+PVA + + G V ++ L
Sbjct: 279 GRLL--PAQEEYAKQLGKQD----GVAALSALIDGRQPVAALSKTQTGGKGVADGTAALT 332
Query: 211 A 211
A
Sbjct: 333 A 333
>gnl|CDD|119304 pfam10784, Plasmid_stab_B, Plasmid stability protein. This
family is conserved in the Enterobacteriales. It is a
putative plasmid stability protein in that it is
expressed from the operon involved in stability, but
its actual function has not yet been characterized.
Length = 72
Score = 28.1 bits (63), Expect = 1.1
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 28 PESDTIGCMACNI--NISIRCSTDTPRFAATCQLQLDSRNPRSPLLLKLLPSPALT 81
P++ AC ++ + R A L L +PR P LL L + +
Sbjct: 9 PDAVRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETS 64
>gnl|CDD|227898 COG5611, COG5611, Predicted nucleic-acid-binding protein, contains
PIN domain [General function prediction only].
Length = 130
Score = 27.9 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 186 REPVAVI--PILRAGLVLVEHASSILPAIKTYHLGK 219
RE + + +L L VE I AIK Y K
Sbjct: 58 REDIYEVIETLLNDELFNVELKDFIREAIKLYSKRK 93
>gnl|CDD|165416 PHA03145, PHA03145, helicase-primase primase subunit; Provisional.
Length = 1058
Score = 28.8 bits (64), Expect = 3.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 138 QTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVAV 191
QTP P++R AMA G+ A DW V++ PR+P A+
Sbjct: 523 QTPLPVYRIAMAPRGQAFAALARDDWARITRDARLPAADVSAAAAAAPRDPGAL 576
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase.
Length = 1085
Score = 27.6 bits (61), Expect = 7.0
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 135 RNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPM-GVASVEFIDPREPVAV 191
R+E P P+ + G + + T SG + S +IDPR+PV V
Sbjct: 138 RHESQPIPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPV 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.413
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,369,919
Number of extensions: 1149042
Number of successful extensions: 795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 20
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)