RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025961
(245 letters)
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 101 bits (254), Expect = 1e-26
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
V+V HPLI+H ++ +R++ T FR + E+ L+ +E +RD P EI++P+
Sbjct: 2 GKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDL-PLEEVEIETPVS 60
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
A + I ++ VIPILRAG+ +V+ ++PA K H+G
Sbjct: 61 KARAKVIAGKKLG-VIPILRAGIGMVDGILKLIPAAKVGHIG 101
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 99 bits (249), Expect = 6e-26
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
+ V HPLIKH ++I+R++ T FR + E+ LL YEA+R E+++P+
Sbjct: 14 KNLVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHL-KCEEVEVETPIT 72
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
+ + + + V+PILRAGLV+ + +LP H+G
Sbjct: 73 KT-IGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIG 113
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 100 bits (250), Expect = 7e-26
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
+V + ++ ++I+R+++TP F L RLL+ EA + LP E+ +P+ V
Sbjct: 35 VVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNE-LPFQKKEVTTPLDV 93
Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
+ + + + I+RAG + ++ ++ +
Sbjct: 94 S-YHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKIL 133
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 98.8 bits (246), Expect = 1e-25
Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M + + HPL++H ++ LR+++T FR E+ L+ YEA RD +++P+
Sbjct: 1 MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDL-ELEETTVETPIA 59
Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
A V+ + + +A++ ILRAGLV+VE ++P + H+G
Sbjct: 60 PARVKVL-SGKKLALVAILRAGLVMVEGILKLVPHARVGHIG 100
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 95.4 bits (237), Expect = 2e-24
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
++ HPLIKH V+ R + T R + ELG +L+YEA +D E+++ +G
Sbjct: 1 MIVELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDI-LLEEKEVRTWIGN 59
Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
+++ + +PILRAGL +E A ++P K LG
Sbjct: 60 KRFNYLNEE-EIVFVPILRAGLSFLEGALQVVPNAKVGFLG 99
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 94.6 bits (235), Expect = 6e-24
Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+F+ HPLI+H ++ +R++ T FR + E+ L+ YE +R+ P + +++P+
Sbjct: 11 LFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNL-PITTKRVETPLVEI 69
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHL 217
I ++ ++P+LRAG+ + + ++P+ + H+
Sbjct: 70 DAPVIAGKKLA-IVPVLRAGVGMSDGLLELIPSARVGHI 107
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 94.3 bits (234), Expect = 9e-24
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
M ++V P+ H ++ LR++ T FR + LGR+L YE S L E+++P+G
Sbjct: 1 MPLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISN-TLDYEIVEVETPLG 59
Query: 177 VASV-EFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
V + I + +I ILRA + LVE P + +G
Sbjct: 60 VKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIG 102
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 89.6 bits (222), Expect = 4e-22
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
+ HPL+KH + ++R + FR +E+G LL YEA+ D L T I+ G
Sbjct: 3 IVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATAD-LETEKVTIEGWNGPV 61
Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
++ I + + V+PILRAGL +++ +P+ + +G
Sbjct: 62 EIDQI-KGKKITVVPILRAGLGMMDGVLENVPSARISVVG 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.3
Identities = 49/267 (18%), Positives = 78/267 (29%), Gaps = 86/267 (32%)
Query: 4 PWNEYPILSHGNHISQTPSHSQTLPESDTIGCMACNINIS---IRCSTDTPRFAATCQ-L 59
+ + + G +I + + P+ D + +I IS I + T + L
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYL----LSIPISCPLI-GVIQLAHYVVTAKLL 256
Query: 60 QLDSRNPRSPL-----LLKLLPSPALTQRPNKIAYSS-----YTPRRSYVT------VRS 103
RS L + L + IA + + R +T VR
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVA------IAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 104 HMATEEKSISGDRMLVFVPPHPLIKHWVSILRNEQTPCPIF--RN-AMAELGRLLMYEAS 160
+ A S+ PP L S+ NE P P+ N ++ + +
Sbjct: 311 YEAYPNTSL---------PPSILED---SLENNEGVPSPMLSISNLTQEQVQDYV--NKT 356
Query: 161 RDWLPT----------------VSGEIQS-------------PMGV--ASVEFIDPREPV 189
LP VSG QS P G+ + + F R+
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLK 415
Query: 190 AVIPILRAGLVLV-EHASSIL-PAIKT 214
L V H S +L PA
Sbjct: 416 FSNRFLP---VASPFH-SHLLVPASDL 438
Score = 28.5 bits (63), Expect = 2.9
Identities = 42/219 (19%), Positives = 62/219 (28%), Gaps = 64/219 (29%)
Query: 43 SIRCSTDTPR---FAATCQLQLDSRNPRSPLLLKLLPSP----ALTQRPNKIA--YSSYT 93
S+ P F A+ QLQ + K+LP P A P A +
Sbjct: 15 SLEHVLLVPTASFFIAS-QLQ-EQ-------FNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 94 PRRSYVTVRSHMATEEKSISGDRMLVFV------------PPHPLIKHWVSILRNEQTPC 141
YV S + K D++L H L +L+ T
Sbjct: 66 ---GYV---SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA---AKLLQENDTTL 116
Query: 142 P----IFRN---AMAELGRLLMYEASRDWLPTV-SGEI--------QSPMGVASVEFIDP 185
+ +N A R +++ V G Q G F +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ---GNTDDYFEEL 173
Query: 186 RE-----PVAVIP-ILRAGLVLVEHASSILPAIKTYHLG 218
R+ V V I + L E + L A K + G
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 26.9 bits (60), Expect = 6.4
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 170 EIQSPMGVASVEFIDPREPV-AVIPILRAG---LVLVEH 204
+ S +E D + + I L+ V + H
Sbjct: 156 DTVSAATRVGIEARDEIKWLQRYIDELKGKVDLTVALIH 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.413
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,677,410
Number of extensions: 209372
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 13
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)