RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025961
         (245 letters)



>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
           [TaxId: 274]}
          Length = 208

 Score = 97.7 bits (243), Expect = 1e-25
 Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 117 MLVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMG 176
           M + +  HPL++H ++ LR+++T    FR    E+  L+ YEA RD L      +++P+ 
Sbjct: 1   MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRD-LELEETTVETPIA 59

Query: 177 VASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
            A V+ +  ++   ++ ILRAGLV+VE    ++P  +  H+G
Sbjct: 60  PARVKVLSGKKLA-LVAILRAGLVMVEGILKLVPHARVGHIG 100


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 2/100 (2%)

Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
           V+V  HPLI+H ++ +R++ T    FR  + E+  L+ +E +RD LP    EI++P+  A
Sbjct: 3   VYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRD-LPLEEVEIETPVSKA 61

Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
             + I  +  + VIPILRAG+ +V+    ++PA K  H+G
Sbjct: 62  RAKVIAGK-KLGVIPILRAGIGMVDGILKLIPAAKVGHIG 100


>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
           [TaxId: 2336]}
          Length = 210

 Score = 95.4 bits (237), Expect = 1e-24
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
           + V  HPLIKH ++I+R++ T    FR  + E+  LL YEA+R  L     E+++P+   
Sbjct: 5   LVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATR-HLKCEEVEVETPITKT 63

Query: 179 SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
               I+ ++ V V PILRAGLV+ +    +LP     H+G
Sbjct: 64  IGYRINDKDIVVV-PILRAGLVMADGILELLPNASVGHIG 102


>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 215

 Score = 92.0 bits (228), Expect = 2e-23
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 119 VFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGVA 178
           ++V   P+  H ++ LR++ T    FR  +  LGR+L YE S         E+++P+GV 
Sbjct: 2   LYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTL-DYEIVEVETPLGVK 60

Query: 179 SVE-FIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLG 218
           +    I     + +I ILRA + LVE      P  +   +G
Sbjct: 61  TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIG 101


>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
           5811]}
          Length = 224

 Score = 91.2 bits (226), Expect = 4e-23
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 118 LVFVPPHPLIKHWVSILRNEQTPCPIFRNAMAELGRLLMYEASRDWLPTVSGEIQSPMGV 177
           +V +     ++  ++I+R+++TP   F      L RLL+ EA  +  P    E+ +P+ V
Sbjct: 16  VVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNEL-PFQKKEVTTPLDV 74

Query: 178 ASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGK 219
            S   +     +  + I+RAG  +     ++   ++   +  
Sbjct: 75  -SYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILI 115


>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 28 PESDTIGCMACNINISIR---CSTDTPRFAATCQLQLDSRNPRSPLLL 72
          P +  I C+ C +          +       TC    DS N R+ +LL
Sbjct: 25 PSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILL 72


>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 196

 Score = 25.8 bits (56), Expect = 4.8
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 36  MACNINISIRCSTDTPRFAATCQLQLDSRNPRSPLLLKLLPSPALTQRPNKIAYSSYTPR 95
           M C + I ++              +LD R+  S L L++        +   + Y+   PR
Sbjct: 35  MGCLVPIQVK-------------WKLDKRHFNSNLSLRI--RFVKYDKKENVEYAIRNPR 79

Query: 96  RSYVTVRSHMATEEK 110
              +  RSH   E+ 
Sbjct: 80  SDVMKCRSHTEREQH 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,801
Number of extensions: 39775
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 10
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)