BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025962
         (245 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P43634|CHA4_YEAST Activatory protein CHA4 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=CHA4 PE=1 SV=1
          Length = 648

 Score = 35.0 bits (79), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 158 LKKQISDAKSKELSGHDIFAPPPEILPRPAVRALALKENFNLGDSAPQDVQTSVGVL--- 214
           LKK I  ++  E+    IF+P   +L R    A    E +N     P ++Q +   L   
Sbjct: 430 LKKLIVLSRITEIFASKIFSPNETLLQRSEYLAKFNLEVYNWRRDLPPELQWTKRSLMEM 489

Query: 215 -----TVSDVWMHIHISLFSFSVPL 234
                T++ VW H +I L S++ P 
Sbjct: 490 TDFNPTIAYVWFHYYIVLISYNKPF 514


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.127    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,179,326
Number of Sequences: 539616
Number of extensions: 4032163
Number of successful extensions: 10358
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 10313
Number of HSP's gapped (non-prelim): 102
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)