Query 025962
Match_columns 245
No_of_seqs 94 out of 96
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 21:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ip6_A PAPB, PEDB; immunity pr 11.9 39 0.0013 27.1 -0.5 30 48-85 66-98 (112)
2 3d8l_A ORF12; lactococcal phag 9.4 38 0.0013 25.7 -1.4 19 160-178 3-22 (91)
3 2e2s_A Agelenin; cystine knot, 8.8 74 0.0025 20.8 0.0 13 67-79 16-28 (36)
4 2ofg_X Zinc-transporting ATPas 7.5 1.6E+02 0.0055 21.1 1.4 9 81-89 102-110 (111)
5 3reb_B Tyrosine-protein kinase 6.8 75 0.0026 22.4 -0.7 33 42-74 57-90 (90)
6 2ln4_A Coprisin; antimicrobial 6.7 1.3E+02 0.0045 20.4 0.5 9 14-22 2-10 (44)
7 1ica_A Insect defensin A; anti 6.6 1.3E+02 0.0044 20.0 0.4 7 14-20 2-8 (40)
8 1u07_A TONB protein; beta-hair 6.0 1.1E+02 0.0039 21.5 -0.1 44 135-178 12-55 (90)
9 1nha_A TFIIF-alpha, transcript 5.7 2.5E+02 0.0085 21.3 1.6 30 42-71 4-34 (82)
10 2k9k_A TONB2; metal transport; 5.4 1.5E+02 0.0051 21.5 0.2 45 134-178 26-70 (106)
No 1
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=11.92 E-value=39 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=17.9
Q ss_pred ceeeeCCc--CChHHHHhhhccCCCCccchhhccCC-CCcc
Q 025962 48 SKVVFGGQ--VTDEEVESLNRRKPCSGYKMKEMTGS-GIFA 85 (245)
Q Consensus 48 S~IsFg~q--vt~eEaesl~krK~~S~aK~KEmsGs-gIFa 85 (245)
.++.|-+- +++||++.|- ++||+++| ++|+
T Consensus 66 ~t~clveklhl~~eE~~~L~--------~I~~ia~S~~~WG 98 (112)
T 2ip6_A 66 ASQALVDKLHFTAEENKVLA--------AINELAHSQKGWG 98 (112)
T ss_dssp HHHHHHTTCCCCHHHHHHHH--------HHHHHTTC-----
T ss_pred HHHHHHHHHcCCHHHHHHHH--------HHHHHhccccccc
Confidence 44555555 4566766554 89999999 8884
No 2
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=9.40 E-value=38 Score=25.71 Aligned_cols=19 Identities=47% Similarity=0.711 Sum_probs=15.7
Q ss_pred hccccc-ccccccCCCCCCC
Q 025962 160 KQISDA-KSKELSGHDIFAP 178 (245)
Q Consensus 160 KqlS~A-K~KEmSGsdIFAd 178 (245)
||||.| |.|-+.|.|+|-.
T Consensus 3 kqlstarkfkmitgkdlfqq 22 (91)
T 3d8l_A 3 KQLSTARKFKMITGKDLFQQ 22 (91)
T ss_dssp CCCCHHHHHHHHHSSCHHHH
T ss_pred chhhhhhhhhhhccHHHHHH
Confidence 688876 7888999999975
No 3
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=8.79 E-value=74 Score=20.84 Aligned_cols=13 Identities=46% Similarity=0.830 Sum_probs=10.6
Q ss_pred cCCCCccchhhcc
Q 025962 67 RKPCSGYKMKEMT 79 (245)
Q Consensus 67 rK~~S~aK~KEms 79 (245)
-+=||+-|+||++
T Consensus 16 PrCCsgl~CKeL~ 28 (36)
T 2e2s_A 16 PRCCSGLKCKELS 28 (36)
T ss_dssp CCBCTTCCEEEEE
T ss_pred CcccCCCceeeee
Confidence 3568999999986
No 4
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=7.45 E-value=1.6e+02 Score=21.10 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=7.0
Q ss_pred CCCccCCCC
Q 025962 81 SGIFAAGAE 89 (245)
Q Consensus 81 sgIFa~~~e 89 (245)
.|||+++.|
T Consensus 102 ~~~~~~~~e 110 (111)
T 2ofg_X 102 AGEFNLKQE 110 (111)
T ss_dssp CCCCCCCCC
T ss_pred ccccCCccc
Confidence 379998776
No 5
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}
Probab=6.77 E-value=75 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=2.0
Q ss_pred CCCCCcceeeeCCcCChHHHHhhh-ccCCCCccc
Q 025962 42 QPSDGISKVVFGGQVTDEEVESLN-RRKPCSGYK 74 (245)
Q Consensus 42 Qp~~giS~IsFg~qvt~eEaesl~-krK~~S~aK 74 (245)
++....+.-.|.+.++.++|+.++ .++..|+.|
T Consensus 57 ~~~~~~~~~~~~~~~~r~~ae~lL~~k~~~~~~~ 90 (90)
T 3reb_B 57 ARVDSGGGTSGGGRHRRRQAERMSQIKRLLSEKK 90 (90)
T ss_dssp EEECC-----------------------------
T ss_pred EECCCCCCcccccCcCHHHHHHHHhHHhhhcccC
Confidence 334444444488889999998887 577778665
No 6
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=6.66 E-value=1.3e+02 Score=20.39 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=6.9
Q ss_pred ccccccccC
Q 025962 14 TADLLVWSE 22 (245)
Q Consensus 14 tadLltWse 22 (245)
|-|||+|.-
T Consensus 2 tCDlLs~~~ 10 (44)
T 2ln4_A 2 TCDVLSFEA 10 (44)
T ss_dssp CSCCCCCCC
T ss_pred eeeeecccc
Confidence 679999754
No 7
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Probab=6.60 E-value=1.3e+02 Score=20.01 Aligned_cols=7 Identities=57% Similarity=0.510 Sum_probs=5.2
Q ss_pred ccccccc
Q 025962 14 TADLLVW 20 (245)
Q Consensus 14 tadLltW 20 (245)
|-|||+|
T Consensus 2 tCdlls~ 8 (40)
T 1ica_A 2 TCDLLSG 8 (40)
T ss_dssp CCSCSST
T ss_pred eEEeecc
Confidence 5688876
No 8
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=6.02 E-value=1.1e+02 Score=21.53 Aligned_cols=44 Identities=9% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCchhhhhhhhccCCCCCchhhhhhhcccccccccccCCCCCCC
Q 025962 135 TTLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGHDIFAP 178 (245)
Q Consensus 135 ts~~evaKqrELSGn~~~~~d~~~~KqlS~AK~KEmSGsdIFAd 178 (245)
..+++.|+.+.+.|+..-.-.-..+=.+.++++.+=||+.+|..
T Consensus 12 ~~YP~~a~~~~~~G~V~v~~~i~~~G~v~~~~v~~ssg~~~ld~ 55 (90)
T 1u07_A 12 PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFER 55 (90)
T ss_dssp CCCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSHH
T ss_pred CCCcHHHHHCCCceEEEEEEEECCCCCEEEEEEEecCCcHHHHH
Confidence 45677799999999885333233334577888888889988865
No 9
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=5.72 E-value=2.5e+02 Score=21.29 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=14.0
Q ss_pred CCCCCc-ceeeeCCcCChHHHHhhhccCCCC
Q 025962 42 QPSDGI-SKVVFGGQVTDEEVESLNRRKPCS 71 (245)
Q Consensus 42 Qp~~gi-S~IsFg~qvt~eEaesl~krK~~S 71 (245)
||+.|. +.-.+-+.||+||...-+.|||..
T Consensus 4 ~p~s~~~~~~~~~~~iTEe~VRryL~rkPmT 34 (82)
T 1nha_A 4 QPPSGKTTPNSGDVQVTEDAVRRYLTRKPMT 34 (82)
T ss_dssp ------------CCCCCHHHHHHHHHHSCBC
T ss_pred CCCccCcCCccCCCCCCHHHHHHHHHhCCcc
Confidence 444442 123345669999887666677765
No 10
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=5.45 E-value=1.5e+02 Score=21.51 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=31.8
Q ss_pred CCCchhhhhhhhccCCCCCchhhhhhhcccccccccccCCCCCCC
Q 025962 134 PTTLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGHDIFAP 178 (245)
Q Consensus 134 ~ts~~evaKqrELSGn~~~~~d~~~~KqlS~AK~KEmSGsdIFAd 178 (245)
...+++.|+.+.+.|+..-.-.-..+=.++++++.+=||+.+|..
T Consensus 26 ~~~YP~~A~~~~~eG~V~v~f~I~~~G~v~~~~v~~ssg~~~ld~ 70 (106)
T 2k9k_A 26 EPVYPSRALKRGVEGFVTLSFTIDTTGKAVDINVVDANPKRMFER 70 (106)
T ss_dssp SCCCCSHHHHHCCCCEEEEEEEEETTTEEEEEEEEEESSSSSSHH
T ss_pred CCCCCHHHHHcCCeeEEEEEEEECCCCcEEEEEEEEcCCcHHHHH
Confidence 345566789999999885332233334578889988889988865
Done!