Query 025962
Match_columns 245
No_of_seqs 94 out of 96
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 21:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025962.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025962hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2rcda1 d.17.4.18 (A:1-127) Un 12.4 48 0.0035 22.3 2.0 20 210-229 106-127 (127)
2 d1u07a_ d.212.1.2 (A:) TonB {E 11.7 22 0.0016 23.9 -0.1 43 136-178 13-55 (90)
3 d1m7ja2 b.92.1.6 (A:420-480) N 10.7 93 0.0067 19.7 2.9 39 14-58 7-45 (61)
4 d1rk8b_ d.232.1.1 (B:) Mago na 7.1 69 0.005 24.6 1.1 41 101-148 76-116 (141)
5 d1ywya1 b.55.2.1 (A:23-96) Hyp 5.6 1.6E+02 0.012 20.2 2.3 23 43-65 34-59 (74)
6 d3ci0k1 a.60.16.1 (K:204-274) 5.4 62 0.0045 21.9 -0.1 27 51-77 19-45 (71)
7 d1icaa_ g.3.7.4 (A:) Defensin 5.2 82 0.0059 19.5 0.4 9 14-22 2-10 (40)
8 d1dzfa2 d.78.1.1 (A:144-215) E 5.2 1.6E+02 0.012 19.5 2.0 28 56-83 13-40 (72)
9 d1oj4a2 d.58.26.5 (A:164-283) 4.4 83 0.006 22.1 -0.0 11 10-20 14-24 (120)
10 d1swya_ d.2.1.3 (A:) Phage T4 4.3 1.7E+02 0.012 21.0 1.8 13 41-53 18-30 (164)
No 1
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=12.45 E-value=48 Score=22.27 Aligned_cols=20 Identities=20% Similarity=0.126 Sum_probs=14.6
Q ss_pred cceeeeee--eeEEEEEEeeee
Q 025962 210 SVGVLTVS--DVWMHIHISLFS 229 (245)
Q Consensus 210 sI~lvkt~--kk~~~~~~~~~~ 229 (245)
+.-++|+. =||.|.|.|+.|
T Consensus 106 T~v~~r~~ggWkIv~~H~S~~~ 127 (127)
T d2rcda1 106 MQTWVKMPEGWRIVAAHVSLMS 127 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEcCCeEEEEEEEEeccC
Confidence 33667774 478999999875
No 2
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=11.71 E-value=22 Score=23.95 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=33.0
Q ss_pred CchhhhhhhhccCCCCCchhhhhhhcccccccccccCCCCCCC
Q 025962 136 TLPEVAKQRELSGTLESESEAKLKKQISDAKSKELSGHDIFAP 178 (245)
Q Consensus 136 s~~evaKqrELSGn~~~~~d~~~~KqlS~AK~KEmSGsdIFAd 178 (245)
.+|+.|+.+-+.|...-.-.-..+=.+.++++-+=+|+++|..
T Consensus 13 ~YP~~A~~~g~eG~V~v~f~I~~~G~v~~~~v~~ssg~~~ld~ 55 (90)
T d1u07a_ 13 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFER 55 (90)
T ss_dssp CCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSHH
T ss_pred CCCHHHHHCCCeEEEEEEEEEeCCCCEeEEEEEECCCchHHHH
Confidence 5788899999999886443344445677899999999999964
No 3
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=10.73 E-value=93 Score=19.68 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=24.9
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeCCcCCh
Q 025962 14 TADLLVWSETPPSDSPAQASSTRSSVRGQPSDGISKVVFGGQVTD 58 (245)
Q Consensus 14 tadLltWse~p~~~~~s~~~~~R~~vr~Qp~~giS~IsFg~qvt~ 58 (245)
-|||.-|...--.+. ..-.++ +|++.||..+.-.|++.-
T Consensus 7 ~ADlvvfDp~~i~d~---~~~~~~---~~~~~Gi~~v~VnG~~v~ 45 (61)
T d1m7ja2 7 YADLVVFDPATVADS---ATFEHP---TERAAGIHSVYVNGAAVW 45 (61)
T ss_dssp BCCEEEECTTTCBCC---CCSSST---TCCCBSEEEEEETTEEEE
T ss_pred CCCEEEECHHHccCc---cccccc---ccccceeEEEEECCEEEE
Confidence 488888853321111 122344 899999999888888543
No 4
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.11 E-value=69 Score=24.64 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=27.7
Q ss_pred CCCCCCccceeccccCCcccccccCCCCCCCCCCCCchhhhhhhhccC
Q 025962 101 TPNNKTGLRMYQQAIAGISHISFGEEDSISPKKPTTLPEVAKQRELSG 148 (245)
Q Consensus 101 ~~~~~tsvr~~qq~~~g~SqISFgee~svspKK~ts~~evaKqrELSG 148 (245)
|.+++.+-+..- -.-|.-|||| +.-|+.|+.+|+..++=-|
T Consensus 76 P~pdr~GrQELE-I~~g~~HisF------~TsKigSl~dv~~S~DPeG 116 (141)
T d1rk8b_ 76 PPPDRVGRQELE-IVIGDEHISF------TTSKTGSLVDVNRSKDPEG 116 (141)
T ss_dssp CCCCSSCEEEEE-EEETTEEEEE------EEECCCSHHHHTTSSSHHH
T ss_pred CCCCCcCcEEEE-EEECCEEEEE------EecccccHhhhccCCCchH
Confidence 345555555443 2335579999 7789999999988776444
No 5
>d1ywya1 b.55.2.1 (A:23-96) Hypothetical protein PA2021 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.58 E-value=1.6e+02 Score=20.25 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=18.8
Q ss_pred CCCCcceeeeCCc---CChHHHHhhh
Q 025962 43 PSDGISKVVFGGQ---VTDEEVESLN 65 (245)
Q Consensus 43 p~~giS~IsFg~q---vt~eEaesl~ 65 (245)
+--.+|-+..+|+ ||+.|||.|.
T Consensus 34 ~e~~MSv~~l~G~ri~ItEaEAdaLt 59 (74)
T d1ywya1 34 AEARLSVLYIDGKRLHISEEDAQRLV 59 (74)
T ss_dssp TTTTEEEEEETTCCEECCHHHHHHHH
T ss_pred hHHceEEEEEcceEEecCHHHhhhee
Confidence 3445688888888 9999999987
No 6
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=5.35 E-value=62 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.413 Sum_probs=16.9
Q ss_pred eeCCcCChHHHHhhhccCCCCccchhh
Q 025962 51 VFGGQVTDEEVESLNRRKPCSGYKMKE 77 (245)
Q Consensus 51 sFg~qvt~eEaesl~krK~~S~aK~KE 77 (245)
.|-++++..+|+.++..||..|.+..+
T Consensus 19 lf~~~ls~~~A~~li~~RP~~Gw~sv~ 45 (71)
T d3ci0k1 19 LFDPWLSPVQARALLQQRPAKGWEDVD 45 (71)
T ss_dssp HTC-------CCHHHHTCCTTCCSCHH
T ss_pred HhcCCCCHHHHHHHHHhCCcchhhhHH
Confidence 477788999999999999999998765
No 7
>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae) [TaxId: 34676]}
Probab=5.18 E-value=82 Score=19.54 Aligned_cols=9 Identities=44% Similarity=0.423 Sum_probs=6.6
Q ss_pred ccccccccC
Q 025962 14 TADLLVWSE 22 (245)
Q Consensus 14 tadLltWse 22 (245)
|-|||+|-.
T Consensus 2 TCDllS~~~ 10 (40)
T d1icaa_ 2 TCDLLSGTG 10 (40)
T ss_dssp CCSCSSTTS
T ss_pred ceeecccCC
Confidence 678888754
No 8
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.15 E-value=1.6e+02 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=22.4
Q ss_pred CChHHHHhhhccCCCCccchhhccCCCC
Q 025962 56 VTDEEVESLNRRKPCSGYKMKEMTGSGI 83 (245)
Q Consensus 56 vt~eEaesl~krK~~S~aK~KEmsGsgI 83 (245)
+++||++.++++-.|+...+-.|.=+|-
T Consensus 13 l~~eE~~~il~~y~i~~~qLP~I~~~DP 40 (72)
T d1dzfa2 13 LSSDEKRELLKRYRLKESQLPRIQRADP 40 (72)
T ss_dssp CCHHHHHHHHHHTTCCGGGSCEECTTCH
T ss_pred cCHHHHHHHHHHhCCCHhHCCeecccCH
Confidence 6899999999888888877777765554
No 9
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=4.39 E-value=83 Score=22.05 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=7.7
Q ss_pred CCCCccccccc
Q 025962 10 PHTSTADLLVW 20 (245)
Q Consensus 10 ~htstadLltW 20 (245)
-|.||++.+..
T Consensus 14 ~~vST~~if~~ 24 (120)
T d1oj4a2 14 VSIPTPVIFKD 24 (120)
T ss_dssp CCCCHHHHHTC
T ss_pred CCcChHHHHhC
Confidence 46788888764
No 10
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=4.33 E-value=1.7e+02 Score=20.99 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=9.9
Q ss_pred CCCCCCcceeeeC
Q 025962 41 GQPSDGISKVVFG 53 (245)
Q Consensus 41 ~Qp~~giS~IsFg 53 (245)
|+-+.|+-+|-+|
T Consensus 18 Y~D~~G~~TIGyG 30 (164)
T d1swya_ 18 YKDTEGYYTIGIG 30 (164)
T ss_dssp EECTTSCEEEETT
T ss_pred eeCCCCCeEEeEC
Confidence 6767788777777
Done!