Query 025964
Match_columns 245
No_of_seqs 142 out of 1326
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1E-29 2.3E-34 214.0 17.1 212 2-216 75-295 (302)
2 PTZ00343 triose or hexose phos 100.0 4.4E-28 9.5E-33 207.5 21.0 209 6-215 128-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 1.9E-28 4E-33 203.1 12.4 218 2-220 93-313 (316)
4 PLN00411 nodulin MtN21 family 100.0 1.4E-26 3.1E-31 197.7 21.9 213 5-221 91-335 (358)
5 PRK11453 O-acetylserine/cystei 99.9 1.9E-24 4E-29 181.8 21.2 210 5-216 72-289 (299)
6 PF06027 DUF914: Eukaryotic pr 99.9 8.5E-25 1.8E-29 183.5 17.5 211 7-223 94-314 (334)
7 TIGR00950 2A78 Carboxylate/Ami 99.9 5E-24 1.1E-28 175.6 19.6 201 3-209 58-259 (260)
8 PRK11689 aromatic amino acid e 99.9 1E-23 2.3E-28 176.9 19.6 202 4-216 73-289 (295)
9 PRK15430 putative chlorampheni 99.9 8.5E-24 1.9E-28 177.5 18.7 204 3-217 84-288 (296)
10 PRK11272 putative DMT superfam 99.9 1.3E-23 2.9E-28 176.0 19.0 205 4-216 81-287 (292)
11 PF08449 UAA: UAA transporter 99.9 4.2E-23 9.2E-28 173.8 19.3 214 2-218 74-301 (303)
12 PRK10532 threonine and homoser 99.9 8.4E-22 1.8E-26 165.2 19.7 198 4-216 83-283 (293)
13 TIGR03340 phn_DUF6 phosphonate 99.9 6.9E-22 1.5E-26 164.8 14.1 205 4-211 75-280 (281)
14 KOG1443 Predicted integral mem 99.9 8.6E-22 1.9E-26 158.5 11.2 211 3-214 95-315 (349)
15 COG0697 RhaT Permeases of the 99.8 1.5E-18 3.2E-23 144.7 21.2 202 3-215 81-288 (292)
16 KOG1444 Nucleotide-sugar trans 99.8 3.5E-19 7.7E-24 145.1 12.4 217 2-221 87-307 (314)
17 KOG2765 Predicted membrane pro 99.8 7.9E-18 1.7E-22 139.3 16.2 211 5-217 172-393 (416)
18 TIGR00688 rarD rarD protein. T 99.8 1E-17 2.2E-22 137.9 14.9 175 3-188 81-255 (256)
19 KOG1442 GDP-fucose transporter 99.8 7.9E-20 1.7E-24 145.1 -0.3 217 2-221 112-334 (347)
20 TIGR00776 RhaT RhaT L-rhamnose 99.7 7.8E-17 1.7E-21 134.8 17.0 199 2-214 69-288 (290)
21 PF04142 Nuc_sug_transp: Nucle 99.7 3.6E-16 7.7E-21 127.1 17.9 196 2-204 27-243 (244)
22 COG2962 RarD Predicted permeas 99.7 6.6E-16 1.4E-20 124.6 18.0 205 6-221 86-290 (293)
23 PF03151 TPT: Triose-phosphate 99.7 2.3E-16 5E-21 119.7 13.7 141 73-214 1-153 (153)
24 KOG4510 Permease of the drug/m 99.7 2E-18 4.3E-23 136.7 2.0 204 5-216 110-327 (346)
25 KOG1583 UDP-N-acetylglucosamin 99.7 7E-17 1.5E-21 128.6 7.4 210 2-218 74-318 (330)
26 KOG1580 UDP-galactose transpor 99.7 9.1E-17 2E-21 125.3 6.9 211 3-216 96-315 (337)
27 COG5070 VRG4 Nucleotide-sugar 99.7 3.2E-16 6.9E-21 121.3 8.4 212 6-220 82-302 (309)
28 KOG1581 UDP-galactose transpor 99.7 5E-15 1.1E-19 119.7 15.6 211 4-218 95-317 (327)
29 KOG3912 Predicted integral mem 99.6 1.5E-14 3.2E-19 115.7 15.4 207 6-215 100-335 (372)
30 KOG2234 Predicted UDP-galactos 99.6 7.3E-14 1.6E-18 115.8 19.5 208 5-219 105-327 (345)
31 COG5006 rhtA Threonine/homoser 99.6 3.3E-14 7.1E-19 112.2 13.3 198 3-215 82-283 (292)
32 KOG1582 UDP-galactose transpor 99.6 2.4E-14 5.2E-19 114.0 9.6 209 4-216 118-334 (367)
33 KOG2766 Predicted membrane pro 99.5 2.1E-14 4.5E-19 113.4 3.7 201 11-220 97-305 (336)
34 TIGR00803 nst UDP-galactose tr 99.4 4.6E-12 1E-16 102.1 11.2 191 16-212 2-222 (222)
35 PF00892 EamA: EamA-like trans 99.3 1.3E-11 2.9E-16 89.9 9.7 125 82-213 1-125 (126)
36 COG2510 Predicted membrane pro 99.3 3.9E-11 8.5E-16 85.2 9.7 134 74-213 5-138 (140)
37 PRK15430 putative chlorampheni 99.1 6.2E-09 1.3E-13 87.5 14.4 139 68-213 4-144 (296)
38 KOG4314 Predicted carbohydrate 99.1 1.3E-08 2.7E-13 78.1 14.4 206 3-215 64-277 (290)
39 TIGR00688 rarD rarD protein. T 99.1 8.1E-09 1.8E-13 84.9 14.7 136 72-213 2-141 (256)
40 PF06800 Sugar_transport: Suga 99.0 4.5E-08 9.7E-13 79.9 15.1 197 2-211 55-268 (269)
41 TIGR03340 phn_DUF6 phosphonate 98.9 2.9E-08 6.2E-13 82.9 14.0 132 74-214 3-135 (281)
42 PLN00411 nodulin MtN21 family 98.9 5.6E-08 1.2E-12 83.6 14.0 136 74-214 15-156 (358)
43 PF13536 EmrE: Multidrug resis 98.7 1.5E-08 3.2E-13 72.9 4.9 64 4-68 47-110 (113)
44 TIGR00950 2A78 Carboxylate/Ami 98.6 8.1E-07 1.8E-11 73.0 11.7 118 85-214 2-119 (260)
45 PRK02971 4-amino-4-deoxy-L-ara 98.5 6.7E-06 1.5E-10 60.2 13.5 120 72-215 2-123 (129)
46 PRK11689 aromatic amino acid e 98.5 6.7E-06 1.4E-10 69.1 14.3 130 72-214 4-137 (295)
47 PTZ00343 triose or hexose phos 98.5 1E-05 2.3E-10 69.6 15.6 125 84-214 61-186 (350)
48 PRK11272 putative DMT superfam 98.4 1E-05 2.3E-10 67.8 14.8 130 75-214 11-141 (292)
49 PRK11453 O-acetylserine/cystei 98.4 1.1E-05 2.4E-10 67.9 14.9 124 75-214 7-132 (299)
50 PRK15051 4-amino-4-deoxy-L-ara 98.4 3.9E-07 8.5E-12 65.1 5.1 62 2-63 47-108 (111)
51 PF00892 EamA: EamA-like trans 98.4 4.4E-07 9.5E-12 65.7 4.6 60 3-62 65-124 (126)
52 PF13536 EmrE: Multidrug resis 98.4 5.4E-06 1.2E-10 59.4 9.6 70 145-216 38-108 (113)
53 PF05653 Mg_trans_NIPA: Magnes 98.3 1.6E-06 3.5E-11 72.7 7.2 62 3-64 61-122 (300)
54 COG2962 RarD Predicted permeas 98.3 2E-05 4.4E-10 64.3 11.8 140 71-216 6-146 (293)
55 TIGR00817 tpt Tpt phosphate/ph 98.3 5E-05 1.1E-09 64.0 14.7 120 87-213 17-136 (302)
56 TIGR00776 RhaT RhaT L-rhamnose 98.2 2.5E-05 5.5E-10 65.5 11.9 132 73-216 2-138 (290)
57 PF08449 UAA: UAA transporter 98.2 5.7E-05 1.2E-09 63.7 14.0 128 85-218 13-140 (303)
58 PRK15051 4-amino-4-deoxy-L-ara 98.1 0.00011 2.3E-09 52.5 12.3 58 155-213 51-108 (111)
59 COG0697 RhaT Permeases of the 98.1 0.00028 6E-09 58.5 16.0 139 71-217 6-146 (292)
60 PF06027 DUF914: Eukaryotic pr 98.1 0.00015 3.2E-09 61.7 14.2 141 72-216 13-153 (334)
61 PRK13499 rhamnose-proton sympo 98.1 0.00043 9.3E-09 59.0 16.9 208 2-214 83-341 (345)
62 PF04657 DUF606: Protein of un 98.0 0.00045 9.6E-09 51.3 14.1 131 74-211 3-138 (138)
63 COG2510 Predicted membrane pro 98.0 3.6E-06 7.8E-11 60.2 2.7 61 4-64 79-139 (140)
64 PRK02971 4-amino-4-deoxy-L-ara 97.9 3.4E-05 7.3E-10 56.5 5.4 64 2-65 58-123 (129)
65 PRK10452 multidrug efflux syst 97.7 6.1E-05 1.3E-09 54.3 4.8 64 2-65 40-104 (120)
66 KOG2922 Uncharacterized conser 97.6 0.00028 6E-09 58.6 7.5 62 4-65 76-137 (335)
67 COG2076 EmrE Membrane transpor 97.6 0.00018 3.8E-09 50.3 5.2 63 2-64 40-103 (106)
68 PF04142 Nuc_sug_transp: Nucle 97.6 0.0003 6.5E-09 57.4 7.4 76 142-218 18-93 (244)
69 PRK09541 emrE multidrug efflux 97.5 0.00019 4.2E-09 51.0 5.0 63 2-64 40-103 (110)
70 PRK10532 threonine and homoser 97.5 0.0049 1.1E-07 51.7 14.1 125 71-212 11-135 (293)
71 COG3238 Uncharacterized protei 97.4 0.011 2.3E-07 44.2 13.5 138 71-214 4-146 (150)
72 PRK11431 multidrug efflux syst 97.4 0.00041 8.8E-09 48.8 5.4 63 2-64 39-102 (105)
73 PRK10452 multidrug efflux syst 97.4 0.0011 2.4E-08 47.8 7.6 58 158-216 47-105 (120)
74 PRK10650 multidrug efflux syst 97.4 0.00047 1E-08 48.8 5.3 61 2-62 45-106 (109)
75 PRK09541 emrE multidrug efflux 97.3 0.0019 4E-08 45.9 7.8 57 159-216 48-105 (110)
76 COG4975 GlcU Putative glucose 97.2 3.7E-05 7.9E-10 61.3 -1.7 201 2-215 69-286 (288)
77 PF05653 Mg_trans_NIPA: Magnes 97.2 0.0025 5.5E-08 53.6 8.7 119 70-215 5-123 (300)
78 PRK10650 multidrug efflux syst 97.2 0.0092 2E-07 42.2 10.0 54 159-213 53-107 (109)
79 PF07857 DUF1632: CEO family ( 97.1 0.0013 2.9E-08 53.6 6.4 133 73-219 1-139 (254)
80 PF00893 Multi_Drug_Res: Small 97.1 0.00097 2.1E-08 45.9 4.7 54 2-55 39-93 (93)
81 PRK13499 rhamnose-proton sympo 97.0 0.0089 1.9E-07 51.1 10.5 138 70-216 5-155 (345)
82 KOG2234 Predicted UDP-galactos 97.0 0.033 7.1E-07 47.2 13.2 140 74-214 17-164 (345)
83 COG2076 EmrE Membrane transpor 97.0 0.0074 1.6E-07 42.2 7.9 55 160-215 49-104 (106)
84 PRK11431 multidrug efflux syst 96.9 0.0069 1.5E-07 42.6 7.7 54 160-214 48-102 (105)
85 PF06800 Sugar_transport: Suga 96.6 0.012 2.6E-07 48.4 8.0 113 102-219 10-127 (269)
86 KOG4510 Permease of the drug/m 96.6 0.00042 9.1E-09 56.1 -0.7 133 72-215 38-170 (346)
87 PF03151 TPT: Triose-phosphate 96.4 0.0078 1.7E-07 45.1 5.2 58 5-62 94-151 (153)
88 COG5006 rhtA Threonine/homoser 96.3 0.01 2.3E-07 47.8 5.4 55 6-60 224-278 (292)
89 KOG1580 UDP-galactose transpor 96.0 0.047 1E-06 43.7 7.9 65 153-218 97-161 (337)
90 PF00893 Multi_Drug_Res: Small 95.9 0.027 5.8E-07 38.7 5.4 48 157-205 45-93 (93)
91 KOG2765 Predicted membrane pro 95.8 0.014 3.1E-07 49.6 4.5 75 142-217 160-234 (416)
92 PF10639 UPF0546: Uncharacteri 95.3 0.032 7E-07 39.7 4.2 57 6-62 55-112 (113)
93 PF06379 RhaT: L-rhamnose-prot 94.8 0.83 1.8E-05 38.8 11.9 140 71-218 6-157 (344)
94 TIGR00803 nst UDP-galactose tr 94.4 0.066 1.4E-06 42.9 4.5 56 6-61 166-221 (222)
95 COG4975 GlcU Putative glucose 94.4 0.034 7.3E-07 44.8 2.6 131 73-216 3-138 (288)
96 KOG1581 UDP-galactose transpor 93.3 2.5 5.3E-05 35.4 11.6 131 83-219 25-160 (327)
97 PF10639 UPF0546: Uncharacteri 92.8 0.2 4.2E-06 35.7 4.1 55 156-211 56-111 (113)
98 KOG4314 Predicted carbohydrate 91.6 0.16 3.4E-06 39.7 2.5 62 154-216 66-127 (290)
99 KOG2922 Uncharacterized conser 89.5 0.095 2E-06 43.9 -0.2 121 69-216 18-138 (335)
100 KOG1444 Nucleotide-sugar trans 89.1 12 0.00027 31.5 11.8 133 75-214 15-149 (314)
101 PRK02237 hypothetical protein; 88.2 3.1 6.8E-05 29.1 6.5 46 170-216 62-107 (109)
102 PF02694 UPF0060: Uncharacteri 86.3 3.4 7.3E-05 28.9 5.8 46 170-216 60-105 (107)
103 KOG3912 Predicted integral mem 84.6 16 0.00036 30.5 9.9 68 146-214 91-158 (372)
104 PF02694 UPF0060: Uncharacteri 83.2 2.8 6.1E-05 29.3 4.3 39 27-65 66-104 (107)
105 KOG1441 Glucose-6-phosphate/ph 82.1 1.5 3.2E-05 37.2 3.2 121 87-211 32-152 (316)
106 PRK02237 hypothetical protein; 81.7 3.5 7.7E-05 28.9 4.4 38 27-64 68-105 (109)
107 COG1742 Uncharacterized conser 80.0 3.8 8.2E-05 28.5 4.0 39 27-65 67-105 (109)
108 PF05977 MFS_3: Transmembrane 74.3 71 0.0015 29.3 12.2 23 167-189 346-368 (524)
109 PF06379 RhaT: L-rhamnose-prot 72.4 63 0.0014 27.8 14.2 206 6-212 87-338 (344)
110 PRK06638 NADH:ubiquinone oxido 71.1 49 0.0011 26.0 10.1 25 182-207 133-157 (198)
111 COG3086 RseC Positive regulato 71.0 8.3 0.00018 28.6 4.0 26 163-188 70-95 (150)
112 PF04657 DUF606: Protein of un 70.9 15 0.00032 27.1 5.6 57 5-61 77-138 (138)
113 PF04342 DUF486: Protein of un 68.5 5.5 0.00012 27.8 2.5 28 182-210 77-104 (108)
114 PF04342 DUF486: Protein of un 68.3 13 0.00028 26.0 4.4 33 30-62 74-106 (108)
115 PF07168 Ureide_permease: Urei 63.0 7.7 0.00017 32.6 2.9 71 143-215 74-147 (336)
116 KOG2766 Predicted membrane pro 59.6 0.93 2E-05 37.0 -2.9 61 154-215 91-151 (336)
117 COG5070 VRG4 Nucleotide-sugar 58.7 10 0.00022 30.6 2.7 49 7-55 239-287 (309)
118 KOG1583 UDP-N-acetylglucosamin 54.6 9.4 0.0002 31.7 2.0 53 169-222 93-145 (330)
119 TIGR00892 2A0113 monocarboxyla 53.5 1.6E+02 0.0035 26.1 10.4 12 233-244 444-455 (455)
120 COG3169 Uncharacterized protei 49.5 21 0.00046 24.6 2.8 29 182-211 84-112 (116)
121 COG1742 Uncharacterized conser 49.5 16 0.00034 25.5 2.2 44 171-215 62-105 (109)
122 PF06123 CreD: Inner membrane 47.0 2.1E+02 0.0046 25.6 10.7 67 29-97 308-376 (430)
123 PF05297 Herpes_LMP1: Herpesvi 46.9 6.4 0.00014 32.7 0.0 92 17-111 48-143 (381)
124 PF07444 Ycf66_N: Ycf66 protei 46.5 18 0.0004 24.2 2.1 23 194-216 5-27 (84)
125 PF09964 DUF2198: Uncharacteri 44.9 86 0.0019 20.4 5.8 53 42-97 18-70 (74)
126 PF15102 TMEM154: TMEM154 prot 44.1 17 0.00037 27.0 1.8 21 199-219 66-86 (146)
127 PF06570 DUF1129: Protein of u 44.0 1.6E+02 0.0034 23.2 9.8 24 73-96 112-135 (206)
128 PF09656 PGPGW: Putative trans 42.5 68 0.0015 19.4 4.0 45 48-97 5-49 (53)
129 COG3169 Uncharacterized protei 42.2 34 0.00074 23.6 2.9 30 33-62 84-113 (116)
130 PRK10655 potE putrescine trans 40.4 2.1E+02 0.0045 25.2 8.6 24 197-220 409-432 (438)
131 PF15471 TMEM171: Transmembran 38.9 28 0.0006 28.7 2.4 23 197-219 162-184 (319)
132 PF04246 RseC_MucC: Positive r 38.3 40 0.00087 24.5 3.1 25 165-189 65-89 (135)
133 KOG4831 Unnamed protein [Funct 37.6 19 0.00041 25.2 1.1 56 7-62 67-123 (125)
134 PRK10862 SoxR reducing system 37.2 53 0.0012 24.7 3.7 17 169-185 76-92 (154)
135 PRK10644 arginine:agmatin anti 37.1 1.9E+02 0.0042 25.6 7.9 39 176-216 389-428 (445)
136 MTH00057 ND6 NADH dehydrogenas 36.9 2E+02 0.0044 22.4 8.3 27 182-209 132-158 (186)
137 PF11044 TMEMspv1-c74-12: Plec 36.4 28 0.00061 20.1 1.5 16 194-209 2-17 (49)
138 TIGR00905 2A0302 transporter, 34.9 2.1E+02 0.0046 25.6 7.8 21 197-217 417-437 (473)
139 PF05961 Chordopox_A13L: Chord 34.7 39 0.00085 21.5 2.1 23 196-218 4-26 (68)
140 PRK13108 prolipoprotein diacyl 33.6 2.9E+02 0.0062 25.0 8.2 99 145-244 198-304 (460)
141 PF08507 COPI_assoc: COPI asso 30.8 51 0.0011 24.1 2.6 16 197-212 88-103 (136)
142 COG3247 HdeD Uncharacterized c 30.3 2.7E+02 0.0058 21.8 10.9 41 40-80 15-59 (185)
143 KOG1479 Nucleoside transporter 29.8 4E+02 0.0087 23.7 12.8 42 175-217 162-205 (406)
144 TIGR01167 LPXTG_anchor LPXTG-m 29.6 79 0.0017 16.6 2.6 16 194-209 10-25 (34)
145 cd01324 cbb3_Oxidase_CcoQ Cyto 28.9 56 0.0012 19.3 2.1 23 197-219 14-36 (48)
146 PF07123 PsbW: Photosystem II 28.0 65 0.0014 23.7 2.6 29 68-96 102-130 (138)
147 COG1971 Predicted membrane pro 27.5 82 0.0018 24.7 3.3 42 167-209 40-82 (190)
148 COG4736 CcoQ Cbb3-type cytochr 27.3 77 0.0017 19.7 2.5 24 197-220 13-36 (60)
149 PHA03049 IMV membrane protein; 26.9 59 0.0013 20.6 2.0 23 196-218 4-26 (68)
150 COG4657 RnfA Predicted NADH:ub 26.7 2.3E+02 0.005 21.7 5.4 17 71-87 102-118 (193)
151 PF14880 COX14: Cytochrome oxi 26.5 28 0.00061 21.5 0.5 23 194-216 16-38 (59)
152 PF11295 DUF3096: Protein of u 25.9 60 0.0013 18.2 1.7 32 178-210 1-32 (39)
153 PF03729 DUF308: Short repeat 25.9 1.7E+02 0.0036 18.0 4.7 24 50-73 2-25 (72)
154 PRK10435 cadB lysine/cadaverin 25.6 4.7E+02 0.01 23.1 9.3 20 197-216 406-425 (435)
155 PF11023 DUF2614: Protein of u 24.6 75 0.0016 22.5 2.4 25 41-65 5-29 (114)
156 TIGR03810 arg_ornith_anti argi 24.5 4.1E+02 0.0089 23.7 7.8 20 197-216 412-431 (468)
157 KOG1442 GDP-fucose transporter 24.0 7.2 0.00016 32.4 -3.1 55 158-213 119-173 (347)
158 KOG1443 Predicted integral mem 23.7 2E+02 0.0044 24.5 5.1 58 158-216 101-158 (349)
159 PRK11357 frlA putative fructos 22.3 4E+02 0.0086 23.6 7.2 19 200-218 419-437 (445)
160 PF10753 DUF2566: Protein of u 22.3 2E+02 0.0043 17.6 3.6 32 24-55 8-39 (55)
161 PF11628 TCR_zetazeta: T-cell 21.2 1.2E+02 0.0026 16.3 2.2 26 23-48 7-32 (33)
162 KOG1582 UDP-galactose transpor 21.0 5.1E+02 0.011 21.9 7.5 55 162-217 127-181 (367)
163 PF05545 FixQ: Cbb3-type cytoc 20.9 1.1E+02 0.0025 17.8 2.4 21 198-218 14-34 (49)
164 PRK15432 autoinducer 2 ABC tra 20.8 2.8E+02 0.006 23.9 5.7 41 177-218 260-310 (344)
165 CHL00196 psbY photosystem II p 20.2 1.6E+02 0.0035 16.2 2.6 20 73-92 7-26 (36)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1e-29 Score=213.99 Aligned_cols=212 Identities=25% Similarity=0.307 Sum_probs=175.7
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHH
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGV 81 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~ 81 (245)
++.+..+.|++++|++++++++++++.|+++++++++++|||++++++.+++++++|+.+...++.+.+..|++++++++
T Consensus 75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~ 154 (302)
T TIGR00817 75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISN 154 (302)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999998877666667788999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccc--cc----ccc-chH-HHHHHHH-HHH
Q 025964 82 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDAL--ET----WHF-PPL-MLTLNCL-CTF 152 (245)
Q Consensus 82 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~----~~~-~~~-~~~~~~~-~~~ 152 (245)
++||++.++.|+..+++ +.|+.+.+.|+...+++.+.|.....|++..... .. +.. ..+ .....+. +..
T Consensus 155 ~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
T TIGR00817 155 ITFVSRNIFSKKAMTIK--SLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFH 232 (302)
T ss_pred HHHHHHHHHHHHhhccC--CCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 99999999999987632 4789999999999999998888766554322110 00 111 112 1323333 333
Q ss_pred HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
..+..++.++++++|.++++.++++|++++++|++++||+ +++.+++|+.+++.|+.+|++.|
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~-lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK-ISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC-CchhHHHHHHHHHHHHHHHHHHh
Confidence 3455677899999999999999999999999999999999 99999999999999999998654
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=4.4e-28 Score=207.46 Aligned_cols=209 Identities=21% Similarity=0.301 Sum_probs=178.6
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHHHHHH
Q 025964 6 LWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEA 85 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~~~a 85 (245)
....+.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+.+.++.++++.|++++++|++++|
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a 207 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSS 207 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHH
Confidence 34467999999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHhhhcC---CCCCHHHHHHHHhHHHHHHHHHHHHhhccccccc--------ccccc--cchHHHHHHHHHHH
Q 025964 86 LRLIFMEILVKRKG---LKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA--------LETWH--FPPLMLTLNCLCTF 152 (245)
Q Consensus 86 ~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~ 152 (245)
+++++.|+..++++ .+.++.+...++.+++++.++|.....|...... ...+. ...+.++.+++..+
T Consensus 208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~ 287 (350)
T PTZ00343 208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYY 287 (350)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Confidence 99999999887542 1467888888889999999898877665432110 01111 12234566777777
Q ss_pred HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
..+...+.++++++|.++++.++++|++++++|++++||+ +++.+++|.++++.|+.+|+..
T Consensus 288 l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~-lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 288 LYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ-VTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC-CchHhHHHHHHHHHHHHHHhhc
Confidence 7788888899999999999999999999999999999999 9999999999999999999875
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=203.06 Aligned_cols=218 Identities=38% Similarity=0.550 Sum_probs=196.2
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHH
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGV 81 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~ 81 (245)
++.+.+++|.|++|+|+++++++++++|+++.++++++.+|+.++..+.+++....|+.+.+.+|.++++.|.+.++.+.
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~ 172 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISN 172 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHH-HHHHhhccccc--ccccccccchHHHHHHHHHHHHHHHHH
Q 025964 82 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLF-IPWIFLEKPKM--DALETWHFPPLMLTLNCLCTFALNLSV 158 (245)
Q Consensus 82 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (245)
+..++++++.|+.++++++++++.+++.|+.+++.+.++ |.....|+... ....+|........+..++++..|...
T Consensus 173 ~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~ 252 (316)
T KOG1441|consen 173 LAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSA 252 (316)
T ss_pred HHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999998767789999999999999999999 65555555433 022344444455566669999999999
Q ss_pred HHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhH
Q 025964 159 FLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKE 220 (245)
Q Consensus 159 ~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~ 220 (245)
|.++++++|.|.++.+++|.++.++.++++|+|+ .++.+..|+++.+.|+.+|++.+.+++
T Consensus 253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~p-vt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNP-VTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred HHHHcccCchhhhhhccceEEEEEEeEeeeecCC-CchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999 999999999999999999999876543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=197.74 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=165.1
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH------cccccchhhHHHHHHhhhhceeeeec-cc----------
Q 025964 5 TLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAA------GLEVMSCRMLLIMSVISFGVVVASYG-EI---------- 67 (245)
Q Consensus 5 ~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~------~~e~~~~~~~~~~~~~~~Gv~l~~~~-~~---------- 67 (245)
+..+.+++++|++++.++++.++.|++++++++++ +|||++++|+++++++++|+.++... +.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 44578899999999999999999999999999999 69999999999999999999875431 10
Q ss_pred -------------cch-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccccc
Q 025964 68 -------------NIN-WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA 133 (245)
Q Consensus 68 -------------~~~-~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 133 (245)
+.+ ..|+.++++++++||+|++++|+..++.+ +.....+++..++.+...++....+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP---AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 112 45999999999999999999999877532 3346667777776666666655544322111
Q ss_pred -ccccccchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHh
Q 025964 134 -LETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 212 (245)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~ 212 (245)
...+......++..++...+.+..+++++++.+|.+++++.+++|++++++|++++||+ +++.+++|+++++.|+.+.
T Consensus 248 ~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~-lt~~~~iG~~LIl~Gv~l~ 326 (358)
T PLN00411 248 WIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS-LYLGCLIGGILITLGFYAV 326 (358)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHH
Confidence 11122112223334444445566788999999999999999999999999999999999 9999999999999999998
Q ss_pred hcccchhHh
Q 025964 213 NNHKLKKEA 221 (245)
Q Consensus 213 ~~~~~~~~~ 221 (245)
++.++++.+
T Consensus 327 ~~~~~~~~~ 335 (358)
T PLN00411 327 MWGKANEEK 335 (358)
T ss_pred Hhhhhhhhh
Confidence 876554433
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=1.9e-24 Score=181.77 Aligned_cols=210 Identities=13% Similarity=0.122 Sum_probs=157.7
Q ss_pred hhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc---ccchHHHHHHHHHH
Q 025964 5 TLWLGNTAYLY-ISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE---ININWIGVVYQMGG 80 (245)
Q Consensus 5 ~~~~~~~al~~-~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~---~~~~~~G~~~~l~~ 80 (245)
.+.+.+.+++| .|++.+.++.++.|+++++++++++|||++++++++++++++|+.++..++ .+.++.|+.+++++
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~a 151 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAA 151 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHH
Confidence 33455678888 689999999999999999999999999999999999999999999876532 22346799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccc----cccccccchHHHHHHHHHHHHHHH
Q 025964 81 VVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD----ALETWHFPPLMLTLNCLCTFALNL 156 (245)
Q Consensus 81 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
+++||.+.++.|+..++.+ ..+......++...+.+.........+++... ...++.....++..+.+.+...+.
T Consensus 152 al~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~ 230 (299)
T PRK11453 152 AFSWACGNIFNKKIMSHST-RPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYG 230 (299)
T ss_pred HHHHHHHHHHHHHHhcccC-ccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999765421 23334445566555544333333333332210 011111122234444455555566
Q ss_pred HHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 157 SVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 157 ~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.+++++++.++.+++.+.+++|+++.+++++++||+ +++.+++|+.+++.|+.+..+.+
T Consensus 231 l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~-~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER-LTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHhcch
Confidence 678889999999999999999999999999999999 99999999999999998876644
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.93 E-value=8.5e-25 Score=183.47 Aligned_cols=211 Identities=20% Similarity=0.277 Sum_probs=173.0
Q ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc---------cchHHHHHHH
Q 025964 7 WLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI---------NINWIGVVYQ 77 (245)
Q Consensus 7 ~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~---------~~~~~G~~~~ 77 (245)
.+.+.|++|++++.++++.++..+++++++++++|||+++.|++|++++++|++++...|. +....|++++
T Consensus 94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~ 173 (334)
T PF06027_consen 94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA 173 (334)
T ss_pred HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence 4567899999999999999999999999999999999999999999999999998765441 2348999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccch-HHHHHHHHHHHHHHH
Q 025964 78 MGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPP-LMLTLNCLCTFALNL 156 (245)
Q Consensus 78 l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 156 (245)
+.|+.+||+++++.|+..|+ .+..+.+.+..+++.++..+.....|....... .|.... .+.+..+++.+..+.
T Consensus 174 l~~a~lya~~nV~~E~~v~~----~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~-~w~~~~~~~~v~~~~~lf~~y~ 248 (334)
T PF06027_consen 174 LLGAILYAVSNVLEEKLVKK----APRVEFLGMLGLFGFIISGIQLAILERSGIESI-HWTSQVIGLLVGYALCLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHHHHHheehhhhhcc-CCChhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 478888888888888888877776666544322 233322 233444445555555
Q ss_pred HHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhHhhc
Q 025964 157 SVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEASR 223 (245)
Q Consensus 157 ~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~~~~ 223 (245)
..-..++..+|+..++-.....+.++++++++||++ +++..++|.++++.|..+|+..+++..+++
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~-~~~ly~~af~lIiiG~vvy~~~~~~~~~~~ 314 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYK-FSWLYILAFALIIIGFVVYNLAESPEEEAR 314 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcc-ccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence 566778999999888888888999999999999999 999999999999999999998766544333
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.93 E-value=5e-24 Score=175.64 Aligned_cols=201 Identities=21% Similarity=0.160 Sum_probs=162.0
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc-ccchHHHHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-ININWIGVVYQMGGV 81 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-~~~~~~G~~~~l~~~ 81 (245)
+++..+.+.|++|++++++.++.++.|+++++++++++|||++++++.+++++++|+.++...+ .+.+..|+.++++++
T Consensus 58 ~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~ 137 (260)
T TIGR00950 58 GVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSG 137 (260)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999999998876543 445678999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 025964 82 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLV 161 (245)
Q Consensus 82 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
++|+.+.++.|+..++. +.++.....+...++.+.+.+.....+..... +......++..+.+.....+..++++
T Consensus 138 ~~~a~~~~~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a 212 (260)
T TIGR00950 138 ISFALGTVLYKRLVKKE--GPELLQFTGWVLLLGALLLLPFAWFLGPNPQA---LSLQWGALLYLGLIGTALAYFLWNKG 212 (260)
T ss_pred HHHHHHHHHHhHHhhcC--CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987542 23345555567777777777765543322211 11111123444444455666778899
Q ss_pred HhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHH
Q 025964 162 ISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGV 209 (245)
Q Consensus 162 i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi 209 (245)
+++.++.+++.+.+++|+++.+++++++||+ ++..+++|..+++.|+
T Consensus 213 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~-~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 213 LTLVDPSAASILALAEPLVALLLGLLILGET-LSLPQLIGGALIIAAV 259 (260)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 9999999999999886
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=1e-23 Score=176.86 Aligned_cols=202 Identities=14% Similarity=0.038 Sum_probs=151.6
Q ss_pred hhhhhhhhhhh----ccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc-----------c
Q 025964 4 MTLWLGNTAYL----YISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI-----------N 68 (245)
Q Consensus 4 ~~~~~~~~al~----~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~-----------~ 68 (245)
++..+.+.+++ +.++..+.++.++.|+++++++++++|||+++++++++.++++|++++..++. +
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 152 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA 152 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc
Confidence 34445555664 46778889999999999999999999999999999999999999998765432 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHH
Q 025964 69 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNC 148 (245)
Q Consensus 69 ~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (245)
.+..|+.++++++++||.|+++.|+..++ .++..... ..+.+.+.+.....+.+. ...++. .+..+.+.+
T Consensus 153 ~~~~G~~~~l~aa~~~A~~~v~~k~~~~~----~~~~~~~~---~~~~~~l~~~~~~~~~~~--~~~~~~-~~~~l~~~~ 222 (295)
T PRK11689 153 SNPLSYGLAFIGAFIWAAYCNVTRKYARG----KNGITLFF---ILTALALWIKYFLSPQPA--MVFSLP-AIIKLLLAA 222 (295)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhccCC----CCchhHHH---HHHHHHHHHHHHHhcCcc--ccCCHH-HHHHHHHHH
Confidence 23569999999999999999999997543 34444322 222333333333222211 111111 122233445
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 149 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
+.+...+..+++++++.++.+++...+++|+++++++++++||+ +++.+++|+++++.|+.+....+
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~-~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP-LSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhHHHHhhhH
Confidence 56666678889999999999999999999999999999999999 99999999999999998876543
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.92 E-value=8.5e-24 Score=177.47 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=154.5
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVV 82 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~ 82 (245)
+.+..+.+++++++|++.++++.++.|+++++++++++|||++++++.+++++++|++++...+.+.. .+++++++
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~ 159 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAF 159 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998764322221 46888999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccc-ccccccccchHHHHHHHHHHHHHHHHHHHH
Q 025964 83 GEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM-DALETWHFPPLMLTLNCLCTFALNLSVFLV 161 (245)
Q Consensus 83 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
+||.|.+..|+..+++ ..+......|..+.+.....+.. +.+.. ....++. .+..++..++.+...+.+++++
T Consensus 160 ~~a~~~i~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~g~~t~i~~~~~~~a 233 (296)
T PRK15430 160 SFAFYGLVRKKIAVEA--QTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMS-LNLLLIAAGIVTTVPLLCFTAA 233 (296)
T ss_pred HHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988864321 12334444555555544322221 11110 0111111 1233444455566777889999
Q ss_pred HhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccc
Q 025964 162 ISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 162 i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~ 217 (245)
+++.+|.+++.+.+++|+++.++|++++||+ +++.+++|+++++.|+.+......
T Consensus 234 ~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~-~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 234 ATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK-PGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999888766543
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.92 E-value=1.3e-23 Score=176.02 Aligned_cols=205 Identities=14% Similarity=0.044 Sum_probs=159.8
Q ss_pred hhhhhhhhhh-hccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec-cccchHHHHHHHHHHH
Q 025964 4 MTLWLGNTAY-LYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG-EININWIGVVYQMGGV 81 (245)
Q Consensus 4 ~~~~~~~~al-~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~-~~~~~~~G~~~~l~~~ 81 (245)
..+.+.+++. ++++++.++++.++.|+++++++++ +|||+++++++++.++++|+.++..+ +.+.+..|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~ 159 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIAS 159 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHH
Confidence 3456667788 9999999999999999999999986 69999999999999999999887643 3345568999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 025964 82 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLV 161 (245)
Q Consensus 82 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
++||.+.++.|+..++ ++.....++..+++..+.+.....+.+.. ...+......++..+.+.+...+..++++
T Consensus 160 ~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~~~~l~~~~ 233 (292)
T PRK11272 160 ASWAFGSVWSSRLPLP-----VGMMAGAAEMLAAGVVLLIASLLSGERLT-ALPTLSGFLALGYLAVFGSIIAISAYMYL 233 (292)
T ss_pred HHHHHHHHHHHhcCCC-----cchHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886432 33455677777777776666544332211 11111111223334444455556678889
Q ss_pred HhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 162 ISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 162 i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
+++.++.+++.+.+++|+.+.+++++++||+ +++.+++|+.+++.|+.+.+..+
T Consensus 234 ~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~-~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 234 LRNVRPALATSYAYVNPVVAVLLGTGLGGET-LSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999998876543
No 11
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.91 E-value=4.2e-23 Score=173.77 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=179.2
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecccc----c------hH
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEIN----I------NW 71 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~----~------~~ 71 (245)
+.++..++|.|++|+|.+..++.+++.|+.+++++.+++|||.+++|+.++++.++|+++...+|.+ . +.
T Consensus 74 ~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~ 153 (303)
T PF08449_consen 74 FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSA 153 (303)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccch
Confidence 4567789999999999999999999999999999999999999999999999999999998765421 1 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhc---cccccccc-ccccchHHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLE---KPKMDALE-TWHFPPLMLTLN 147 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~ 147 (245)
.|+.+.+++.++.|++.+++|+..+++ +.++.+.++|...++.+...+.....+ ........ .....+..+...
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~--~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKY--GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 499999999999999999999999875 578899999999998888777765521 11111100 111123446677
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccch
Q 025964 148 CLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
++.+...+...+..+++.+|.+.+++..++.++++++++++||++ +++.||+|+++++.|..+|+..+++
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~-~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP-LSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc-CChHHHHHHHHhHHHHHHHHHhhcc
Confidence 777888778888899999999999999999999999999999999 9999999999999999999887654
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=8.4e-22 Score=165.19 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=148.5
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec--c-ccchHHHHHHHHHH
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG--E-ININWIGVVYQMGG 80 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~--~-~~~~~~G~~~~l~~ 80 (245)
....+.+++++|+|++.+.++..+.|+++++++ +||+++. ..+.++++|+.++... + .+.+..|+++++++
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~a 156 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGA 156 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHH
Confidence 445667889999999999999999999999886 3565544 4466778999876532 2 23457899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 025964 81 VVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFL 160 (245)
Q Consensus 81 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
+++||.|.+..|+..++ .++... .++..++++.+.|.....+... ..++......+..+.+++...+..+++
T Consensus 157 a~~~a~~~v~~r~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~l~lgv~~t~~~~~l~~~ 228 (293)
T PRK10532 157 GACWAIYILSGQRAGAE----HGPATV-AIGSLIAALIFVPIGALQAGEA---LWHWSILPLGLAVAILSTALPYSLEMI 228 (293)
T ss_pred HHHHHHHHHHHHHHhcc----CCchHH-HHHHHHHHHHHHHHHHHccCcc---cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998654 344444 4555666666666554432211 111111112234444555555667889
Q ss_pred HHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 161 VISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 161 ~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
++++.++.+++.+.+++|+++.++|++++||+ +++.+++|+.+++.|++.+....
T Consensus 229 ~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~-~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 229 ALTRLPTRTFGTLMSMEPALAAVSGMIFLGET-LTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999 99999999999999999987654
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.88 E-value=6.9e-22 Score=164.80 Aligned_cols=205 Identities=13% Similarity=0.068 Sum_probs=151.5
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc-ccchHHHHHHHHHHHH
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-ININWIGVVYQMGGVV 82 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-~~~~~~G~~~~l~~~~ 82 (245)
.+..+.+.++++.+++....+.++.|+++++++++++|||+++++++++.++++|+.++...+ .+.+..|+.+++++++
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal 154 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAAL 154 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999998776433 2344678889999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 025964 83 GEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVI 162 (245)
Q Consensus 83 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (245)
+|+.|.+..|+..++.+...+......+.....+....+.....+.... .... ...+.+...+++.+...+..+++++
T Consensus 155 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~s~l~~~l~~~al 232 (281)
T TIGR03340 155 GTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSM-FPYA-RQILPSATLGGLMIGGAYALVLWAM 232 (281)
T ss_pred HHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccch-hhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887653321111122222333332221222222111111111 0111 1112345666666767777888999
Q ss_pred hhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHH
Q 025964 163 SHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAA 211 (245)
Q Consensus 163 ~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l 211 (245)
++.++.+++...+++|+++.++|++++||+ +++.+++|+.+++.|+.+
T Consensus 233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~-~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 233 TRLPVATVVALRNTSIVFAVVLGIWFLNER-WYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hhCCceEEEeecccHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999 999999999999999875
No 14
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.87 E-value=8.6e-22 Score=158.48 Aligned_cols=211 Identities=24% Similarity=0.429 Sum_probs=190.1
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVV 82 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~ 82 (245)
+++..++||+++|++++.|++.+++.++|+.+++..+.-||+++.-...+.++.+|++++.+.+.+++..|..+...+++
T Consensus 95 a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~ 174 (349)
T KOG1443|consen 95 ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASL 174 (349)
T ss_pred hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCCHHHHHHHHhHHHHHHHHHHHHhhccccccc-cccc--------ccchHHHHHHHHHHH
Q 025964 83 GEALRLIFMEILVKRKG-LKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA-LETW--------HFPPLMLTLNCLCTF 152 (245)
Q Consensus 83 ~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~ 152 (245)
+.++...+.+..+++.+ .+.+|...+++..+...+.++|..+.+|++.... ...+ ......+.+++..++
T Consensus 175 ~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF 254 (349)
T KOG1443|consen 175 LSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAF 254 (349)
T ss_pred hhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 6788999999999999999999999889876431 1111 112234778888999
Q ss_pred HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
.+.++-+....+++..+.++.+..+-+.+.++|+.+.+|+ ++...|+|..++..|+.++..
T Consensus 255 ~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~-ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 255 LLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQ-LSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcc-hhhhHHHHHHHHHHHHHHhcc
Confidence 9988889999999999999999999999999999999999 999999999999999999843
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=144.70 Aligned_cols=202 Identities=18% Similarity=0.198 Sum_probs=154.7
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH-HHcccccchhhHHHHHHhhhhceeeeeccccc---hHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGV-AAGLEVMSCRMLLIMSVISFGVVVASYGEINI---NWIGVVYQM 78 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~-~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~---~~~G~~~~l 78 (245)
.....+.+.++++++++.++.+.++.|+++.++++ +++|||++++++.++.+.+.|+.++...+... +..|+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l 160 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLAL 160 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHH
Confidence 44567788899999999999999999999999997 77799999999999999999999998765443 368999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHH-HHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHH-HHHH
Q 025964 79 GGVVGEALRLIFMEILVKRKGLKLNPISVMY-YVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF-ALNL 156 (245)
Q Consensus 79 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (245)
.+++++|++.+..|+.. + .++..... ++.........+.. . .... ...... .+......++... ..+.
T Consensus 161 ~a~~~~a~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~-~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 161 AAALLWALYTALVKRLS-R----LGPVTLALLLQLLLALLLLLLFF-L-SGFG--APILSR-AWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHhc-C----CChHHHHHHHHHHHHHHHHHHHH-h-cccc--ccCCHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 2 34555554 44332122212221 1 1111 111111 1222333333333 4667
Q ss_pred HHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 157 SVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 157 ~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
.+++.+++.++...+...+++|+.+.+++++++||+ ++..+++|+.+++.|+.+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~-~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEP-LSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHhcc
Confidence 788999999999999999999999999999999999 9999999999999999988765
No 16
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.5e-19 Score=145.13 Aligned_cols=217 Identities=18% Similarity=0.306 Sum_probs=184.5
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHH
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGV 81 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~ 81 (245)
|-+....+..+++|++++++++++...|+++++.+..++|.|+++..+.++..+.+|......+|.+++..|..|++...
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~ 166 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANC 166 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccc-cc-cccccc--cchHHHHHHHHHHHHHHHH
Q 025964 82 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPK-MD-ALETWH--FPPLMLTLNCLCTFALNLS 157 (245)
Q Consensus 82 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 157 (245)
++.+.+.++.|+..+.. +.+.+++++|..+.+...+.....+.++.+ .. ....|. ..+..+.++|+++++.+++
T Consensus 167 ~~~a~~~v~~kk~vd~~--~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~ 244 (314)
T KOG1444|consen 167 LTTAAFVVYVKKSVDSA--NLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYT 244 (314)
T ss_pred HHHHHHHHHHHHhhccc--cccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999987654 578899999999998877776665544322 11 111122 1234589999999999999
Q ss_pred HHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhHh
Q 025964 158 VFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 221 (245)
Q Consensus 158 ~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~~ 221 (245)
.+++.+..|+++.++++..+...+.+-+.+.+|++ .++...+|..+-+.|..+|++.+.++++
T Consensus 245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~-~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKP-FTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHhhccccceeehhhhhhHHHHHHHHhcCCce-echhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 99999999999999999666666766667777788 9999999999999999999998755433
No 17
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.78 E-value=7.9e-18 Score=139.26 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=174.9
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc--------cchHHHHHH
Q 025964 5 TLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI--------NINWIGVVY 76 (245)
Q Consensus 5 ~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~--------~~~~~G~~~ 76 (245)
...+.|.|+.|++++..+++.+++-+||.+++.++..||++..|.+++.+.++|++++..+|. +....|.++
T Consensus 172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ll 251 (416)
T KOG2765|consen 172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLL 251 (416)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999987632 234899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccc---ccccccccchHHHHHHHHHHHH
Q 025964 77 QMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM---DALETWHFPPLMLTLNCLCTFA 153 (245)
Q Consensus 77 ~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (245)
++.+++.||.|.++.|+...+++.++|......+..++..+.+.|+..+.+.... +.+...+. ..++..+.+..++
T Consensus 252 aL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~-~~vv~~~ligtvv 330 (416)
T KOG2765|consen 252 ALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQF-SLVVFNNLIGTVV 330 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCcee-EeeeHhhHHHHHH
Confidence 9999999999999999988776567888888888888888887877655432221 11111111 2234455666777
Q ss_pred HHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccc
Q 025964 154 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~ 217 (245)
.-+.+.++.-.++|..+++-..+...++++.+.++=|.+ +++.+++|.+.|++|....++..+
T Consensus 331 SDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~-~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 331 SDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH-PSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHhheecccc
Confidence 778888889999999999999999999999999888999 999999999999999999887654
No 18
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.77 E-value=1e-17 Score=137.87 Aligned_cols=175 Identities=12% Similarity=-0.007 Sum_probs=123.4
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVV 82 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~ 82 (245)
+++..+.+++++++++++++++.++.|+++++++++++|||++++++++++++++|++++..++.+.. .+++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~ 156 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAF 156 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999987754322222 35788999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 025964 83 GEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVI 162 (245)
Q Consensus 83 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (245)
+||.|.+..|+..++ +..+...+.. .......+.....+....... +....+..++..++.+...+.++..++
T Consensus 157 ~~a~~~i~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~t~i~~~l~~~a~ 229 (256)
T TIGR00688 157 SFTAYGLIRKALKNT-----DLAGFCLETL-SLMPVAIYYLLQTDFATVQQT-NPFPIWLLLVLAGLITGTPLLAFVIAA 229 (256)
T ss_pred HHHHHHHHHhhcCCC-----CcchHHHHHH-HHHHHHHHHHHHhccCccccc-CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886432 2222222221 111111111111111111111 111122333444455667788899999
Q ss_pred hhchhHHHHHHhhhhhhhhhhhhhhh
Q 025964 163 SHTSALTIRVAGVVKDWVVVLFSALL 188 (245)
Q Consensus 163 ~~~~a~~~~~~~~~~pv~~~~~~~~~ 188 (245)
|+.++.+++.+.+++|+++.+++.++
T Consensus 230 ~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 230 NRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999764
No 19
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.9e-20 Score=145.08 Aligned_cols=217 Identities=19% Similarity=0.179 Sum_probs=179.9
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc---ccchHHHHHHHH
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE---ININWIGVVYQM 78 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~---~~~~~~G~~~~l 78 (245)
|-+...+.|.+++|++++++.+-+++..+|+.++.++++|+|.+..-..+.++.+.|..+-+..+ ...++.|.++++
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGV 191 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGV 191 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHH
Confidence 44567789999999999999999999999999999999999999999999999999988876544 446799999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhh-ccccccc-cccccc-chHHHHHHHHHHHHHH
Q 025964 79 GGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFL-EKPKMDA-LETWHF-PPLMLTLNCLCTFALN 155 (245)
Q Consensus 79 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 155 (245)
.++++-|+..++.|+..... +-.-+.+.+|.++.+.+..+|...+. |...... +..+.. .|.++.++|++++.++
T Consensus 192 laSl~vAlnaiytkk~l~~v--~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mg 269 (347)
T KOG1442|consen 192 LASLAVALNAIYTKKVLPPV--GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMG 269 (347)
T ss_pred HHHHHHHHHHHhhheecccc--cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999765432 34558889999988877766665442 2111111 112222 2446899999999999
Q ss_pred HHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhHh
Q 025964 156 LSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 221 (245)
Q Consensus 156 ~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~~ 221 (245)
+...+-+|.+||.|+.+-+..+.....+++...++|. .+..-|-|-++++.|...|.+.|..+.+
T Consensus 270 yvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~-ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 270 YVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSET-KSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred heeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHH-hhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 9888899999999999999999999999999999999 9999999999999999999988765443
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.75 E-value=7.8e-17 Score=134.77 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=153.8
Q ss_pred chhhhhhhhhhhhccchhHHHHHHH-HHHHHHHHHHHHHcccccchhh----HHHHHHhhhhceeeeecccc-------c
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKA-IMPVAVFILGVAAGLEVMSCRM----LLIMSVISFGVVVASYGEIN-------I 69 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~-~~pi~~~~~~~~~~~e~~~~~~----~~~~~~~~~Gv~l~~~~~~~-------~ 69 (245)
++....+.+.+.++++++.+..+.+ +.|++..+++.+++|||.++++ .+++++.++|+++....+.+ .
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~ 148 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEF 148 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccccccc
Confidence 3455678889999999999999988 8889999999999999999999 99999999999987653211 2
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHH---HHhHHHHHHHHHHHHhhcccccccccccccchHHHH
Q 025964 70 N-WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMY---YVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLT 145 (245)
Q Consensus 70 ~-~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
+ ..|+.++++++++|+.|.+..|+. +.++.+.++ +...+++.+..++.. +.... .....+...
T Consensus 149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~ 215 (290)
T TIGR00776 149 NFKKGILLLLMSTIGYLVYVVVAKAF------GVDGLSVLLPQAIGMVIGGIIFNLGHI--LAKPL-----KKYAILLNI 215 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc------CCCcceehhHHHHHHHHHHHHHHHHHh--cccch-----HHHHHHHHH
Confidence 2 689999999999999999999865 257777744 434444444444331 11111 111122233
Q ss_pred HHHHHHHHHHHHHHHHHh-hchhHHHHHHhhhhhhhhhhhhhhhccccccchhhh----hhHHHHHHHHHHhhc
Q 025964 146 LNCLCTFALNLSVFLVIS-HTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINL----FGYGIAIAGVAAYNN 214 (245)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~-~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~----~G~~li~~gi~l~~~ 214 (245)
..|+.....+.+++...+ +.++.+++.+.+.+|+.+.+++++++||+ .+..|+ +|.++++.|+.+...
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~-~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK-KTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC-CCcceeehhHHHHHHHHHHHHHHhc
Confidence 356666666667778888 99999999999999999999999999999 999999 999999999987644
No 21
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=3.6e-16 Score=127.07 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=150.9
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc--------------
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI-------------- 67 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~-------------- 67 (245)
|+..-.+.+.++++++++.+++++.+..+++++++++++|+|++++||.++.+.++|+.+...++.
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~ 106 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHD 106 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccc
Confidence 556667788999999999999999999999999999999999999999999999999998764321
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccccccc---ccccch
Q 025964 68 ---NINWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALE---TWHFPP 141 (245)
Q Consensus 68 ---~~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~ 141 (245)
+....|+++.++++++.++..++.++.+|+.+ .+.+....+....+.++.++.....+.....+.. .+....
T Consensus 107 ~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~ 184 (244)
T PF04142_consen 107 ASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWV 184 (244)
T ss_pred cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHH
Confidence 11368999999999999999999999998754 5666666666666666655554443333322222 222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHH
Q 025964 142 L-MLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGI 204 (245)
Q Consensus 142 ~-~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~l 204 (245)
+ .+...++ ..+..-..+|+.+...-+.......+++.++++.+||.+ ++....+|..+
T Consensus 185 ~~~i~~~a~----gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~-~s~~f~lg~~~ 243 (244)
T PF04142_consen 185 WIVIFLQAI----GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFP-PSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHH----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHhhheec
Confidence 2 2233333 333445568999999999999999999999999999999 99999999765
No 22
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.72 E-value=6.6e-16 Score=124.55 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=151.3
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHHHHHH
Q 025964 6 LWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEA 85 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~~~a 85 (245)
-+...||...-.+-+++.-....|++.++++++++|||+++.|+++++++.+||........+.++..+.+ +++|+
T Consensus 86 W~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~ 161 (293)
T COG2962 86 WWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFG 161 (293)
T ss_pred HHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHH
Confidence 34444555565666677778899999999999999999999999999999999998877666677755444 55677
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 025964 86 LRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHT 165 (245)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (245)
+|...-|+. ++++.+-.......-....+......++............+.++.+.|..+..--.++..+-|+.
T Consensus 162 ~Ygl~RK~~------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~l 235 (293)
T COG2962 162 LYGLLRKKL------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRL 235 (293)
T ss_pred HHHHHHHhc------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 776664433 46777777666544333333333333332210010112234567777877777767777889999
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhHh
Q 025964 166 SALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 221 (245)
Q Consensus 166 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~~ 221 (245)
+-.+.++..|.+|..-.+++++++||+ ++..++++.+.+..|..+|.....++.+
T Consensus 236 pls~~G~lqYi~Ptl~fllav~i~~E~-~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 236 PLSTLGFLQYIEPTLMFLLAVLIFGEP-FDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 9999999999999999999887654433
No 23
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.71 E-value=2.3e-16 Score=119.70 Aligned_cols=141 Identities=33% Similarity=0.517 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccc----c--c---cccc
Q 025964 73 GVVYQMGGVVGEALRLIFMEILVKRK---GLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDAL----E--T---WHFP 140 (245)
Q Consensus 73 G~~~~l~~~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~--~---~~~~ 140 (245)
|.++++.+.++.|+++++.|+.++++ +.+.++.++++|..+.+.+.++|.+...|.+..... . + ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999999873 357899999999999999999999888776653211 1 1 1133
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 141 PLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
+..+..+++.++..+.+.+..++++||.+.++.+.+|.+...+.|+++|||+ +|+.+++|..+.+.|..+|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~-~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP-ITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc-CCHHHHHHHHHHHHHHheeeC
Confidence 4568889999999999999999999999999999999999999999999999 999999999999999999874
No 24
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.71 E-value=2e-18 Score=136.75 Aligned_cols=204 Identities=17% Similarity=0.120 Sum_probs=159.1
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee-----ccc---------cch
Q 025964 5 TLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY-----GEI---------NIN 70 (245)
Q Consensus 5 ~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~-----~~~---------~~~ 70 (245)
..++.++|++|++.+.+.++..++|.++.+++|.++|||.++...++..+.+.|++++.- ++. +.+
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~ 189 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD 189 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence 456788999999999999999999999999999999999999999999999999998763 221 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHH
Q 025964 71 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLC 150 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (245)
..|.+.++.+++..|--.++.|++-|+ .|....+.|..+++.+..++..........+. -+.. ++++...|+.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~----~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~--cgkd-r~l~~~lGvf 262 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKN----AHAIMSVSYFSLITLVVSLIGCASIGAVQLPH--CGKD-RWLFVNLGVF 262 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhcc----ccEEEEehHHHHHHHHHHHHHHhhccceecCc--cccc-eEEEEEehhh
Confidence 568888888888888888888877554 45566667777776666555443322222221 1111 1233444677
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 151 TFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 151 ~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
++..++.....+++-.|...++..+.+.+++.++.+++|||. ++++.|+|+++++.+..+....|
T Consensus 263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~-Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHW-PTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCC-ChHHHhhceeeeehhHHHHHHHH
Confidence 888888888889998888899999999999999999999999 99999999999998877765443
No 25
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.68 E-value=7e-17 Score=128.55 Aligned_cols=210 Identities=19% Similarity=0.243 Sum_probs=169.2
Q ss_pred chhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec---ccc---------
Q 025964 2 FAMTLWLGNTAYLY-ISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG---EIN--------- 68 (245)
Q Consensus 2 ~~~~~~~~~~al~~-~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~---~~~--------- 68 (245)
|-.....+|+++++ +|.+...++++-+++.+|..++++.|+|.+.+|+.++....+|+++.... |..
T Consensus 74 FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~ 153 (330)
T KOG1583|consen 74 FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSG 153 (330)
T ss_pred eeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccC
Confidence 34455678999998 79999999999999999999999999999999999999999999986542 210
Q ss_pred ---ch----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccc------ccc
Q 025964 69 ---IN----WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD------ALE 135 (245)
Q Consensus 69 ---~~----~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~ 135 (245)
.+ .+|+.+..++.+..|...++++...++++ -|+-+.++|...++ +|..++..++..+ ..+
T Consensus 154 ~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalFytH~Ls----LP~Flf~~~div~~~~~~~~se 227 (330)
T KOG1583|consen 154 SAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALFYTHFLS----LPLFLFMGDDIVSHWRLAFKSE 227 (330)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHhc----cchHHHhcchHHHHHHHHhcCc
Confidence 01 47999999999999999999999998865 48899999998776 3333332221110 000
Q ss_pred ---------ccccchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHH
Q 025964 136 ---------TWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAI 206 (245)
Q Consensus 136 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~ 206 (245)
.....++.++++++.++++.-..+.+-.++++.+++++-.++..+++++++..|+.+ +++..|+|..+++
T Consensus 228 ~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Np-ft~~h~lGa~lVF 306 (330)
T KOG1583|consen 228 SYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENP-FTPWHWLGAALVF 306 (330)
T ss_pred ceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCC-CCHHHHHHHHHHH
Confidence 111234568888988988877777788899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhcccch
Q 025964 207 AGVAAYNNHKLK 218 (245)
Q Consensus 207 ~gi~l~~~~~~~ 218 (245)
.|-.+|.....+
T Consensus 307 ~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 307 FGTLLFANVWNH 318 (330)
T ss_pred HHHHHHHHHHcC
Confidence 999999765443
No 26
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.67 E-value=9.1e-17 Score=125.26 Aligned_cols=211 Identities=19% Similarity=0.202 Sum_probs=167.7
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc-------ccchHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-------ININWIGVV 75 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-------~~~~~~G~~ 75 (245)
-+.+...|.++||+|-++..+-+++-||-+++++.++.|++.+++++..++.+++|+++..+.+ ...-..|-+
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GEl 175 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGEL 175 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHH
Confidence 3556778999999999999999999999999999999999999999999999999999887642 122357999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHh-hcccccccccc-cccchHHHHHHHHHHHH
Q 025964 76 YQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIF-LEKPKMDALET-WHFPPLMLTLNCLCTFA 153 (245)
Q Consensus 76 ~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (245)
+.+++--..++....+.++... +..+...++++.++.+.+.+....++ .|...+..... ....++-+.+.++++..
T Consensus 176 LL~lSL~mDGlTg~~Qdrira~--yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~L 253 (337)
T KOG1580|consen 176 LLILSLAMDGLTGSIQDRIRAS--YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCL 253 (337)
T ss_pred HHHHHHHhcccchhHHHHHHHh--hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 9999998888888888887543 34577888899988888776665443 22222211100 01112335555677777
Q ss_pred HHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 154 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.+.+.+..+...+|.+-+++...+..++++.++++|+.+ ++..||+|..+++.+...-....
T Consensus 254 GQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~np-ls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 254 GQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNP-LSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred hhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHhhhHhhcC
Confidence 778888899999999999999999999999999999999 99999999999999987755443
No 27
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.66 E-value=3.2e-16 Score=121.28 Aligned_cols=212 Identities=16% Similarity=0.228 Sum_probs=179.9
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccccch-------HHHHHHHH
Q 025964 6 LWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININ-------WIGVVYQM 78 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~-------~~G~~~~l 78 (245)
.....-++||.+++.+++.+.++.+.++..+.+++|.|.+.....+.++++..-+...++|.+.. -.|.+|+.
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~ 161 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF 161 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEe
Confidence 44566799999999999999999999999999999999999999999999999999888876422 25899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccccccc--ccccchHHHHHHHHHHHHHHH
Q 025964 79 GGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALE--TWHFPPLMLTLNCLCTFALNL 156 (245)
Q Consensus 79 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (245)
...++.|.+....|+..|-. +....+.++|..+++..++....+..|+....... ........+..+++++++..+
T Consensus 162 ~NclssaafVL~mrkri~lt--Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy 239 (309)
T COG5070 162 TNCLSSAAFVLIMRKRIKLT--NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY 239 (309)
T ss_pred hhhHhHHHHHHHHHHhhccc--ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh
Confidence 99999999999988876642 45778999999999988888888877766543211 111223467889999999999
Q ss_pred HHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhH
Q 025964 157 SVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKE 220 (245)
Q Consensus 157 ~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~ 220 (245)
+.-|+++-++.++.++++.++.....+.|.++|||+ .+...+..+.+-..+..+|...+.+++
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap-~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAP-VNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999988899988765443
No 28
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.66 E-value=5e-15 Score=119.74 Aligned_cols=211 Identities=21% Similarity=0.243 Sum_probs=169.8
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc---------cchHHHH
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI---------NINWIGV 74 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~---------~~~~~G~ 74 (245)
.+-.+++.|++|++-+...+.+++--+-+++.+.++.|+|.+.++++...+..+|+.+....+. ..+++|+
T Consensus 95 ~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~ 174 (327)
T KOG1581|consen 95 LSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGI 174 (327)
T ss_pred cchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhH
Confidence 4567889999999999999999999999999999999999999999999999999987764311 2458999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccccc--ccccc-cchHHHHHHHHHH
Q 025964 75 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA--LETWH-FPPLMLTLNCLCT 151 (245)
Q Consensus 75 ~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ 151 (245)
.+....-+..++.+..++++.++ .+.++++++++.+++.++.-... +...+...+. ...-+ ..++=+.+-+.++
T Consensus 175 ~Ll~~~L~fDgfTn~tQd~lf~~--~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~~g 251 (327)
T KOG1581|consen 175 LLLFGYLLFDGFTNATQDSLFKK--YKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYSTCG 251 (327)
T ss_pred HHHHHHHHHHhhHHhHHHHHhcc--CCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHHhh
Confidence 99999999999999999999984 47999999999999987765554 2222211111 00000 1112244445666
Q ss_pred HHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccch
Q 025964 152 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 152 ~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
...+.+.+..+++.++.+.+.+...+..+++.++.++||.+ +++.|++|..+++.|+.+-...+++
T Consensus 252 avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~-~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 252 AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHP-LSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCc-cchhhccCeeeehHHHHHHHHHHHh
Confidence 66777788899999999999999999999999999999999 9999999999999999886655444
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=115.69 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=162.5
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc----------cchHHHHH
Q 025964 6 LWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI----------NINWIGVV 75 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~----------~~~~~G~~ 75 (245)
..+.+.++.+++++.+|+++....+|+.+++.-+++++++.+||+++....+|++++...|. +.-..|++
T Consensus 100 sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdl 179 (372)
T KOG3912|consen 100 SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDL 179 (372)
T ss_pred hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhH
Confidence 34678999999999999999999999999999999999999999999999999998765432 22368999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhc----ccccc--ccccccc----------
Q 025964 76 YQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLE----KPKMD--ALETWHF---------- 139 (245)
Q Consensus 76 ~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~--~~~~~~~---------- 139 (245)
+.+.+.+.-|.+.++.+|..++. +++|.+.+.|..+++..++........ +..++ +...+..
T Consensus 180 lIiiaqiivaiQ~v~Eek~l~~~--nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e 257 (372)
T KOG3912|consen 180 LIIIAQIIVAIQMVCEEKQLKKS--NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQE 257 (372)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc--cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcC
Confidence 99999999999999999998874 699999999999988554433332211 11111 1111111
Q ss_pred -chHHHHHHH--HHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 140 -PPLMLTLNC--LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 140 -~~~~~~~~~--~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
+...+.+.+ +.-.+.|+.....-|..|+++-.+...++..+..++++.+..|. +...|+.|..+.+.|+.+|+..
T Consensus 258 ~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~-f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 258 SPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY-FHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred CchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222 22223466667778999999999999999999999999999999 9999999999999999999854
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.63 E-value=7.3e-14 Score=115.83 Aligned_cols=208 Identities=14% Similarity=0.108 Sum_probs=156.0
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc-----------ccchHHH
Q 025964 5 TLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-----------ININWIG 73 (245)
Q Consensus 5 ~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-----------~~~~~~G 73 (245)
.--+.+.++.+.+++++++...+-.+.|+++.++++|||++++||.++++.++|+.++..+. .+..+.|
T Consensus 105 qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G 184 (345)
T KOG2234|consen 105 QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLG 184 (345)
T ss_pred hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhh
Confidence 33467789999999999999999999999999999999999999999999999999876211 1234789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccccc---ccccccchH-HHHHHHH
Q 025964 74 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA---LETWHFPPL-MLTLNCL 149 (245)
Q Consensus 74 ~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~ 149 (245)
....+.+.++.++..++.++.+|+. +.+.+-.......++.++.+...+..++..... ...|....| .++..++
T Consensus 185 ~~avl~~c~~SgfAgvYfEkiLK~s--~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~ 262 (345)
T KOG2234|consen 185 LVAVLVACFLSGFAGVYFEKILKGS--NVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAV 262 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhc
Confidence 9999999999999999999999864 345555555555555555454444434333221 112222222 3444444
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchh
Q 025964 150 CTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 150 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~ 219 (245)
.+.. .-..+|+.+-..-+....+..+++.+.++.+||-+ +|....+|..+++.++.+|+..+.+.
T Consensus 263 gGLl----vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~-~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 263 GGLL----VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQ-LTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred cchh----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHHhhcCCccc
Confidence 4443 33446788877778888888899999999999999 99999999999999999999655443
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.59 E-value=3.3e-14 Score=112.21 Aligned_cols=198 Identities=14% Similarity=0.044 Sum_probs=146.6
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec---cccchHHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG---EININWIGVVYQMG 79 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~---~~~~~~~G~~~~l~ 79 (245)
++...+.+.+++.+|.+.+..+.++.|+.++.++ .+| .++.+.+.+.+.|+.+..-. ..+.|+.|..+++.
T Consensus 82 g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~ 155 (292)
T COG5006 82 GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALG 155 (292)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHH
Confidence 3455667789999999999999999999998775 233 34555666777888765432 24578999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHH-HHHHHH
Q 025964 80 GVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF-ALNLSV 158 (245)
Q Consensus 80 ~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (245)
++.||+.|.+..||.-+. .|..+-+...+.+++++.+|......++...+ +.. ....+..+++.. .-+..-
T Consensus 156 AG~~Wa~YIv~G~r~g~~----~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~---p~l-l~laLgvavlSSalPYsLE 227 (292)
T COG5006 156 AGACWALYIVLGQRAGRA----EHGTAGVAVGMLVAALIVLPIGAAQAGPALFS---PSL-LPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HhHHHHHHHHHcchhccc----CCCchHHHHHHHHHHHHHhhhhhhhcchhhcC---hHH-HHHHHHHHHHhcccchHHH
Confidence 999999999999988753 35566777778888888788765433332221 111 112222223322 224445
Q ss_pred HHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 159 FLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 159 ~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
..++++.++.+.+....+||.++.+.|++++||. +|+.||+|+..++.+..-....
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~-ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGET-LTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccccc
Confidence 6679999999999999999999999999999999 9999999999999987754443
No 32
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.4e-14 Score=114.00 Aligned_cols=209 Identities=19% Similarity=0.185 Sum_probs=172.4
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc----ccchHHHHHHHHH
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE----ININWIGVVYQMG 79 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~----~~~~~~G~~~~l~ 79 (245)
|++.+.|-++.|.+-+.-.+.+++--+-+++-+.++.++|..++.+.+..++..|+++....| ++++..|+.+.-.
T Consensus 118 gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsg 197 (367)
T KOG1582|consen 118 GTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISG 197 (367)
T ss_pred hccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHH
Confidence 677889999999999999999999988899999999999999999999999999999987765 5678899999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhh-ccccccc---ccccccchHHHHHHHHHHHHHH
Q 025964 80 GVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFL-EKPKMDA---LETWHFPPLMLTLNCLCTFALN 155 (245)
Q Consensus 80 ~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 155 (245)
+-++.|+-...+++.++..+ -+..++++|...++...++.+.... |...... ..++. .....++-...+++..
T Consensus 198 ALl~DA~iGNvQEk~m~~~~--~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~-tyGy~~~~s~~gylG~ 274 (367)
T KOG1582|consen 198 ALLADAVIGNVQEKAMKMNP--ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVR-TYGYAFLFSLAGYLGI 274 (367)
T ss_pred HHHHHHHhhHHHHHHHhhCC--CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHh-HHHHHHHHHHHhHhhH
Confidence 99999999999999988764 4678999999999888877776542 3221111 11221 1223444455666666
Q ss_pred HHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 156 LSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 156 ~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.+....++..+|.+++.+...+..+++++++++|..| +|....-|..+++.|+.+....+
T Consensus 275 ~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKP-fT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 275 VFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKP-FTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCc-hHHHHhhhhHHHHHHHHhhcccC
Confidence 6677889999999999999999999999999999999 99999999999999999877655
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.48 E-value=2.1e-14 Score=113.41 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=156.1
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecc--------ccchHHHHHHHHHHHH
Q 025964 11 TAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE--------ININWIGVVYQMGGVV 82 (245)
Q Consensus 11 ~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~--------~~~~~~G~~~~l~~~~ 82 (245)
.|.||++....+.+..-..+.+.+++|+++|.|.++.|..++.++..|+++++..| .+....|+.+.+.++-
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GAT 176 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGAT 176 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecce
Confidence 48899999999999999999999999999999999999999999999999887654 2334789999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 025964 83 GEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVI 162 (245)
Q Consensus 83 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (245)
+||..++..+.+.|+ .+..+++....++++++..+- +..|..+... ..|.+.....+....+.+..+...-..+
T Consensus 177 lYaVSNv~EEflvkn----~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t-l~w~~~i~~yl~f~L~MFllYsl~pil~ 250 (336)
T KOG2766|consen 177 LYAVSNVSEEFLVKN----ADRVELMGFLGLFGAIISAIQ-FIFERHHVST-LHWDSAIFLYLRFALTMFLLYSLAPILI 250 (336)
T ss_pred eeeeccccHHHHHhc----CcHHHHHHHHHHHHHHHHHHH-Hhhhccceee-EeehHHHHHHHHHHHHHHHHHHhhHHhe
Confidence 999999999998874 689999999999998887776 4445444322 1222222222234444555555555667
Q ss_pred hhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhH
Q 025964 163 SHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKE 220 (245)
Q Consensus 163 ~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~ 220 (245)
|..+++..++-.......+++. ..||-+ .+|..++....+..|.++|..+++.+.
T Consensus 251 k~~~aT~~nlslLTsDmwsl~i--~~FgYh-v~wLY~laF~~i~~GliiYs~re~~~~ 305 (336)
T KOG2766|consen 251 KTNSATMFNLSLLTSDMWSLLI--RTFGYH-VDWLYFLAFATIATGLIIYSTREKDEE 305 (336)
T ss_pred ecCCceEEEhhHhHHHHHHHHH--HHHhcc-hhhhhHHHHHHHHHhhEEeeccccCcH
Confidence 8888877776666666777766 788999 999999999999999999976554433
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.38 E-value=4.6e-12 Score=102.07 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=128.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec-------------------cc--------c
Q 025964 16 ISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG-------------------EI--------N 68 (245)
Q Consensus 16 ~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~-------------------~~--------~ 68 (245)
++++.....++..++++++.++.+.+||.+..|+++.++...|+...... +. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 46777888999999999999999999999999999999999998742111 11 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccc---cccccchHHHH
Q 025964 69 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDAL---ETWHFPPLMLT 145 (245)
Q Consensus 69 ~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~ 145 (245)
..+.|....+.+..+.++..++.++..|+++ .+.+.........+.+.........+....... ..+....+..
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD--TMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV- 158 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC--CchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH-
Confidence 3467777788888888888888888765432 222222222222222211111111111111111 1111112222
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHh
Q 025964 146 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 212 (245)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~ 212 (245)
.+.....+.+..+.+|+.++.+.++...++++++.++++++|||+ ++..++.|+.+++.|+.+|
T Consensus 159 --~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~-ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 159 --GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK-ISSTFYLGAILVFLATFLY 222 (222)
T ss_pred --HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHeeeEeC
Confidence 222333344567789999999999999999999999999999999 9999999999999987765
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.32 E-value=1.3e-11 Score=89.86 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 025964 82 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLV 161 (245)
Q Consensus 82 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
++||.+.++.|+..++ .|+....++....+.+ +++.....+..+. ...+..........+.+.....+..++++
T Consensus 1 ~~~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 74 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYA 74 (126)
T ss_pred ceeeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHH
Confidence 4688899999988764 7999999999999887 5555544443321 11112222233444444456667778899
Q ss_pred HhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 162 ISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 162 i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
+++.++..++.+.+++|+++.++++++++|+ +++.+++|+.+++.|+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~-~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 75 LKYISASIVSILQYLSPVFAAILGWLFLGER-PSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999998753
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.28 E-value=3.9e-11 Score=85.23 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHH
Q 025964 74 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 153 (245)
Q Consensus 74 ~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (245)
.++++++++.+++..++.|.-.++ .||...++...++..+.+.............. +-....+..++++|+.+..
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~-~~~~k~~lflilSGla~gl 79 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGG-EIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceeccc-ccCcceehhhhHHHHHHHH
Confidence 579999999999999999877653 67777777777776666555544433222221 1111224557788888888
Q ss_pred HHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 154 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
.+.++|+++|.-.+..+..+.-..|++++++++++++|+ +|..+++|+.++..|..+..
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~-ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER-LSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhCeeeEe
Confidence 899999999999999999999999999999999999999 99999999999999987643
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.05 E-value=6.2e-09 Score=87.50 Aligned_cols=139 Identities=9% Similarity=0.107 Sum_probs=106.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccc-c-cccccccchHHHH
Q 025964 68 NINWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM-D-ALETWHFPPLMLT 145 (245)
Q Consensus 68 ~~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 145 (245)
+....|+.+++++++.|+...++.|.. . +.++.++.+++..++.+++.+.......... . ...++. ......
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y----YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQ-KIFMLA 77 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c----CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHH-HHHHHH
Confidence 344689999999999999999999754 2 3799999999999988776665433221110 0 000111 112233
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 146 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
.+++.....+.+++++++++++..+++..+..|++..++++++++|+ ++..+++|+++.+.|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~-~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER-FRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 44555555677889999999999999999999999999999999999 99999999999999998754
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.05 E-value=1.3e-08 Score=78.09 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=141.3
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeeccc--cchHHHHHHHHHH
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI--NINWIGVVYQMGG 80 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~--~~~~~G~~~~l~~ 80 (245)
.+.-..+..+++.++++.++.+..+.-.++.+++++.+|+|+...++++.++++.|++++.+.|. ..+++|+.+++.+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~S 143 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGS 143 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHH
Confidence 44555677899999999999999999999999999999999999999999999999999998654 4679999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHH----HHHHHHH-hhcc-cccccccccccchHHHHHHHHHHHHH
Q 025964 81 VVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSAL----CLFIPWI-FLEK-PKMDALETWHFPPLMLTLNCLCTFAL 154 (245)
Q Consensus 81 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (245)
+...|+|-+.-|+...... ... ...+.+.++.. ..+|+.. ...+ .++....- .+|.-+..........
T Consensus 144 A~~aAlYKV~FK~~iGnAn--~Gd--aa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~--~PWG~l~G~A~L~lAF 217 (290)
T KOG4314|consen 144 AFMAALYKVLFKMFIGNAN--FGD--AAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAA--APWGCLCGAAGLSLAF 217 (290)
T ss_pred HHHHHHHHHHHHHHhccCc--chh--HHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhh--CCchhhhhHHHHHHHH
Confidence 9999999999988876432 211 11111212211 1222221 1111 11111111 1122222223334444
Q ss_pred HHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 155 NLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 155 ~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
++.....+..+.|...++-...........+.+ ++|-+.+.....|-.+++.|..+.-..
T Consensus 218 N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL-~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 218 NFLINFGIALLNPILISIGMLCGIPGNAAIDIL-FQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhheeehhhhhchhhheehheecCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 555666677888888887777766667777664 455448888999999999998876543
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.05 E-value=8.1e-09 Score=84.94 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccccc--c--cccccccchHHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM--D--ALETWHFPPLMLTLN 147 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 147 (245)
.|..+.++++++|+...+..|.. . +.++.++.++...++.+.+.+.......... . ...............
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~----~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K----PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c----cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 37899999999999999999863 2 3799999999999988776665433221110 0 001111112334555
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 148 CLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
++.....+.+++.+++++++.++++..+..|+++.++++++++|+ ++..+++|..+.+.|+.+..
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek-~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER-ISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH
Confidence 555666677888999999999999999999999999999999999 99999999999999987653
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.96 E-value=4.5e-08 Score=79.87 Aligned_cols=197 Identities=15% Similarity=0.096 Sum_probs=142.5
Q ss_pred chhhhhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHcccccchhhHH----HHHHhhhhceeeeecccc--------
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLL----IMSVISFGVVVASYGEIN-------- 68 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~~e~~~~~~~~----~~~~~~~Gv~l~~~~~~~-------- 68 (245)
++..+...+.|+++++++...-+. .+.-+.+.+++.++++|.-+..+++ ++++.++|+.+....|.+
T Consensus 55 W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~ 134 (269)
T PF06800_consen 55 WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKS 134 (269)
T ss_pred HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 456677788888888888766554 5677889999999999998877765 888888999887764321
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHH
Q 025964 69 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNC 148 (245)
Q Consensus 69 ~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (245)
....|+...+++.+.|..|.+..|.. +.+++...+=+++-..+..+...... .....+ ...+.-.++|
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~-----k~~~~nil~G 202 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFE-----KKSWKNILTG 202 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHHHHhhcc-cccccc-----cchHHhhHHH
Confidence 22569999999999999999887652 46888887766544333322222222 111111 1123345666
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccch----hhhhhHHHHHHHHHH
Q 025964 149 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTI----INLFGYGIAIAGVAA 211 (245)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~----~~~~G~~li~~gi~l 211 (245)
+.--..+.+++...++.+..+.=.++.+..+++.+.|++++||+| +. ..++|.++++.|..+
T Consensus 203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~K-t~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKK-TKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecC-chhhHHHHHHHHHHHHHhhhc
Confidence 666667777888889999999999999999999999999999994 54 366788888887654
No 41
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.94 E-value=2.9e-08 Score=82.86 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhc-ccccccccccccchHHHHHHHHHHH
Q 025964 74 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLE-KPKMDALETWHFPPLMLTLNCLCTF 152 (245)
Q Consensus 74 ~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
.++.+.+++++|...+..|+..+++ ++. ..+.....++.+.|...... ....... . ...+......++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~----~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE----PDF--LWWALLAHSVLLTPYGLWYLAQVGWSRL-P-ATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch----hHH--HHHHHHHHHHHHHHHHHHhcccCCCCCc-c-hhhHHHHHHHHHHHH
Confidence 4688999999999999999776542 333 35555555666666544321 1111111 1 111234555666666
Q ss_pred HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
....+.+.++++.++..++.+.+..|+++.+++++++||+ ++..+++|+.+++.|+.+...
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~-~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET-LSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhc
Confidence 7777788899999999999999999999999999999999 999999999999999987653
No 42
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.88 E-value=5.6e-08 Score=83.58 Aligned_cols=136 Identities=8% Similarity=0.088 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHH
Q 025964 74 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 153 (245)
Q Consensus 74 ~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (245)
...++...++|+.+.++.|..++. ..++....++...++++++++.....+.........+.. +..+.+.++++..
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~---G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~-~~~l~l~g~~g~~ 90 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSK---GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI-LSKIGLLGFLGSM 90 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH-HHHHHHHHHHHHH
Confidence 456777788999999999999865 589999999999999988888766543221111112222 1223333444444
Q ss_pred HHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhh------ccccccchhhhhhHHHHHHHHHHhhc
Q 025964 154 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALL------FADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~------~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
.+.+.+.+++++++..++++.+..|+++.++++++ ++|+ ++..+++|.++.+.|+.+...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er-~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKER-SSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999999 6999 999999999999999987553
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.74 E-value=1.5e-08 Score=72.86 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=58.7
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeecccc
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEIN 68 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~ 68 (245)
....+.++|+++.| +....+.++.|+++++++++++|||++++++.+++++++|++++..+|.+
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 56778899999999 58889999999999999999999999999999999999999998876644
No 44
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.59 E-value=8.1e-07 Score=73.04 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 025964 85 ALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISH 164 (245)
Q Consensus 85 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (245)
+...+..|...++ ..++....++....+.+.+.+..... .+..+ .......+++.....+.+.+.++++
T Consensus 2 g~~~~~~k~~~~~---~~~~~~~~~~r~~~~~l~l~~~~~~~-----~~~~~---~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 2 GTTGVVIGQYLEG---QVPLYFAVFRRLIFALLLLLPLLRRR-----PPLKR---LLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred cchHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHhc-----cCHhH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556665543 36889999999988877766654322 11111 1234555555556667778899999
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 165 TSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 165 ~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
+++..++++..+.|+++.+++.++++|+ +++.+++|+.+.+.|+.+...
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~-~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKER-PRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCC-CcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999 999999999999999988653
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.52 E-value=6.7e-06 Score=60.21 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCT 151 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (245)
.|.++.+.+.++.+...++.|+-.++.+. .+... .. .. .... . .. + ...+..+.++.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~---~~--~~----~~~~-~-~~-------p----~~~i~lgl~~~ 58 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAW---DF--IA----ALLA-F-GL-------A----LRAVLLGLAGY 58 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchh---HH--HH----HHHH-H-hc-------c----HHHHHHHHHHH
Confidence 47788999999999999999887765431 11111 00 00 0000 0 00 0 01223333334
Q ss_pred HHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhh--hccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 152 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSAL--LFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 152 ~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~--~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
.....++..++++.+...+..+..+.++...+.++. +|||+ +|+.+++|+.+++.|+.+.+..
T Consensus 59 ~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~-ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 59 ALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNET-FSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhccC
Confidence 444556778899999999998888888888888875 89999 9999999999999999997653
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.47 E-value=6.7e-06 Score=69.12 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCT 151 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (245)
.++++++.+.++|+......|...+ +.+|.....+...++++++.+.. ..+.. .... ......+++..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~----~~~P~~~~~~R~~~a~l~l~~~~---~~~~~---~~~~--~~~~~~~~l~~ 71 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE----SLGPVGGAAMIYSVSGLLLLLTV---GFPRL---RQFP--KRYLLAGGLLF 71 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc----cCChHHHHHHHHHHHHHHHHHHc---ccccc---cccc--HHHHHHHhHHH
Confidence 3567889999999999999987765 37999999999888887766542 11111 1111 11223333332
Q ss_pred HHHHHHHHHHH----hhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 152 FALNLSVFLVI----SHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 152 ~~~~~~~~~~i----~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
.....+.+... +..++.+++++.++.|+++.++++++++|+ ++..+++|+++.+.|+.+...
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~-~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQK-ANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhHhheec
Confidence 23333333444 346778889999999999999999999999 999999999999999987654
No 47
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.46 E-value=1e-05 Score=69.59 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhhcCCCCC-HHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 025964 84 EALRLIFMEILVKRKGLKLN-PISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVI 162 (245)
Q Consensus 84 ~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (245)
...++...|...++ .+ |+.+..++..++.+...+..... ....+...++...+..++..++++...+...+.++
T Consensus 61 s~~~~~~nK~vl~~----~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl 135 (350)
T PTZ00343 61 NVLYVVDNKLALNM----LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISM 135 (350)
T ss_pred HHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777764 56 99999999998877655443321 11111111111122234455555555555566789
Q ss_pred hhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 163 SHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 163 ~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
+++++..+.++..++|+++++++.++++|+ ++..++.|.++++.|+.+...
T Consensus 136 ~~~svs~~~iika~~Pvft~lls~~~l~ek-~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 136 GLGAVSFTHVVKAAEPVFTALLSILFLKQF-LNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999 999999999999999988764
No 48
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.44 E-value=1e-05 Score=67.84 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHH
Q 025964 75 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFAL 154 (245)
Q Consensus 75 ~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (245)
...+.-.+.|+...+..|...+ +.+|...+++...++++.+++...... .......++ ......+.+.....
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~----~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~~~~~~~~---~~~~~~g~~~~~~~ 82 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVE----SWPPLMMAGVRFLIAGILLLAFLLLRG-HPLPTLRQW---LNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHH---HHHHHHHHHHHHHH
Confidence 4556667889999999987654 479999999999999888777654322 111111111 11222222222233
Q ss_pred HHHHHHHH-hhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 155 NLSVFLVI-SHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 155 ~~~~~~~i-~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
..+.+.+. ++.++..+++..++.|+++.+++.+ ++|+ ++..+++|..+.+.|+.+...
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~-~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIR-TRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hccc-CchhHHHHHHHHHHhHHHHhc
Confidence 34445566 8899999999999999999999985 7999 999999999999999988754
No 49
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.44 E-value=1.1e-05 Score=67.91 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHH-H
Q 025964 75 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF-A 153 (245)
Q Consensus 75 ~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 153 (245)
++.++++++|+...+..|...+ +.+|....++...++++.+.+... .+.. .+ ......++... .
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~~~l~~~~~---~~~~----~~----~~~~~~g~~~~~~ 71 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH----NMPPLMLAGLRFMLVAFPAIFFVA---RPKV----PL----NLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHhc---CCCC----ch----HHHHHHHHHHHHH
Confidence 5678889999999999987764 379999999998887665544321 1111 11 11122233222 2
Q ss_pred HHHHHHHHHhh-chhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 154 LNLSVFLVISH-TSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 154 ~~~~~~~~i~~-~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
.....+...++ .++..++++..+.|+++.++++++++|+ ++..+++|.++.+.|+.+...
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~-~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGER-LQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHhHHHhcc
Confidence 22344556666 5778889999999999999999999999 999999999999999887653
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.43 E-value=3.9e-07 Score=65.06 Aligned_cols=62 Identities=19% Similarity=0.097 Sum_probs=57.4
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeee
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 63 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 63 (245)
|+.++.+...+++..|++.+..+.++.++++++++++++|||++.+|++++.++++|++++.
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45677888889999999999999999999999999999999999999999999999998764
No 51
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.39 E-value=4.4e-07 Score=65.73 Aligned_cols=60 Identities=32% Similarity=0.310 Sum_probs=56.3
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
+....+.+.++++.+++..+.+..+.|+++++++++++|||+++++++++.+++.|++++
T Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 65 ALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred ehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999998764
No 52
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.36 E-value=5.4e-06 Score=59.43 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=58.3
Q ss_pred HHHHHHHH-HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 145 TLNCLCTF-ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 145 ~~~~~~~~-~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
...+++.. ..+..++.+.++.++ .++....+.|+++.+++.++++|+ ++..+++|..++..|+.+....+
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er-~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKER-LSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhhhh
Confidence 33344443 556667788899885 788999999999999999999999 99999999999999999887654
No 53
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.32 E-value=1.6e-06 Score=72.72 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=56.4
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 3 AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 3 ~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
..+......|+.+.|.+..+-+.+..-++.++++..++|||++++.+.|..++++|..++..
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 44556788899999999999999999999999999999999999999999999999987653
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.26 E-value=2e-05 Score=64.34 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccc-cccccccccchHHHHHHHH
Q 025964 71 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPK-MDALETWHFPPLMLTLNCL 149 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 149 (245)
..|+++++.+-+.|+....+.|.+. +.++.++..+..+.+............+.. ..+.......+....+++.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~-----~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLE-----PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 4699999999999999998887663 368999999998887776555544332221 1110111112233444444
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 150 CTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 150 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.-..-...+.++..+-....++.-.+++|.+.+++|.++++|+ ++..|++...+...|+..-.+..
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr-ls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER-LSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444556788888999999999999999999999999999 99999999999999998766543
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.25 E-value=5e-05 Score=63.99 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhch
Q 025964 87 RLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTS 166 (245)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (245)
++++.|...++- ..|..+.+++...+.+.+.+..... ...... .+.. .+..+...+++......+.+.++++++
T Consensus 17 ~~~~NK~~l~~~---~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 17 FNIYNKKLLNVF---PYPYFKTLISLAVGSLYCLLSWSSG-LPKRLK-ISSA-LLKLLLPVAIVHTIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHHhhC---ChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCC-CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445567776531 4688888888877766654442111 111111 1111 122233344444555567788899999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 167 ALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 167 a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
+..++++..+.|+++.+++.++++|+ ++..++.|..+.+.|+.+..
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~-~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQE-FPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999 99999999999999997654
No 56
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.21 E-value=2.5e-05 Score=65.46 Aligned_cols=132 Identities=14% Similarity=-0.006 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHH
Q 025964 73 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 152 (245)
Q Consensus 73 G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
|++++++++++|+...+..|+.. +.++.+.. ...++.+++.........+.. +....+.....+|+.-.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~----~~~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-----GGPYSQTL--GTTFGALILSIAIAIFVLPEF----WALSIFLVGLLSGAFWA 70 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-----CCHHHHHH--HHHHHHHHHHHHHHHHhCCcc----cccHHHHHHHHHHHHHH
Confidence 57899999999999999998764 24555554 244444444433333222211 11112233455555555
Q ss_pred HHHHHHHHHHhhchhHHHHHHhh-hhhhhhhhhhhhhccccccchhh----hhhHHHHHHHHHHhhccc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGV-VKDWVVVLFSALLFADTKLTIIN----LFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~-~~pv~~~~~~~~~~~e~~~~~~~----~~G~~li~~gi~l~~~~~ 216 (245)
..+++++.++++.+...+-.+.+ +.++.+.+++.++|||+ .+..+ ++|.++++.|+.+....+
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~-~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW-STSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHhHheEEecc
Confidence 66788999999999998877777 88899999999999999 99999 999999999998875543
No 57
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.20 E-value=5.7e-05 Score=63.72 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 025964 85 ALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISH 164 (245)
Q Consensus 85 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (245)
..+.+.++++.++...+..+..+++.+.....+...+...... .......+ +.-....+++........+.++++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRKIP----LKKYAILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcCh----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888876543325777888887776665555433322 11111111 222333455666666778888999
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccch
Q 025964 165 TSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 165 ~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
++..+..+....+|+..++++.++++++ .+..+++++.++..|+.+....+.+
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~-y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKR-YSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHhhHheeeecccc
Confidence 9999999999999999999999999999 9999999999999999998876543
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.14 E-value=0.00011 Score=52.52 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=51.6
Q ss_pred HHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 155 NLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 155 ~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
..++..++++.+...+-..-.+.++.+.++|+++|||+ +++.+++|..+++.|+....
T Consensus 51 ~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~-ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 51 MVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP-VSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 34456778999999988888899999999999999999 99999999999999987653
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.10 E-value=0.00028 Score=58.51 Aligned_cols=139 Identities=22% Similarity=0.129 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccc-ccccccccccchHHHHHHHH
Q 025964 71 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKP-KMDALETWHFPPLMLTLNCL 149 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 149 (245)
..+....+..++.|+......|....+ ..+.....+.....+.+...+... .+.. ...... ...+.....++
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~ 78 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLLL-LEPRGLRPALR---PWLLLLLLALL 78 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHHH-hhccccccccc---chHHHHHHHHH
Confidence 456778888888999988887776543 245566666566555544222221 1110 111111 11234455555
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhh-hhccccccchhhhhhHHHHHHHHHHhhcccc
Q 025964 150 CTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSA-LLFADTKLTIINLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 150 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~-~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~ 217 (245)
........++..++++++..++...+..|++..+++. ++++|+ ++..++.|..+.+.|+.+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGER-LSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHhHHheecCCC
Confidence 5555667778889999999999999999999999996 777999 999999999999999998876544
No 60
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.09 E-value=0.00015 Score=61.68 Aligned_cols=141 Identities=17% Similarity=0.129 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCT 151 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (245)
.+.+++-.-+++-+..++....+.++ +.+.+..+.. +....-+++..+......+.+. ........+|.-++-+++=
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~-~~Y~~l~~vy~~~~~~r~~~~~-~~~~~~~~~w~y~lla~~D 89 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSF-FNYVLLALVYTPILLYRRGFKK-WLKVLKRPWWKYFLLALLD 89 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHH-HHHHHHHHHHhhhhhhcccccc-chhhcchhHHHHHHHHHHH
Confidence 44455555555555555556665554 3344444443 3333323333333322211110 0011112233333346777
Q ss_pred HHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 152 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 152 ~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
...++....+.++++.+.+.++.+...++++++++++++++ .++.+++|+.+++.|+.+.....
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~r-y~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRR-YSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhheeeec
Confidence 78888899999999999999999999999999999999999 99999999999999998766543
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.09 E-value=0.00043 Score=58.97 Aligned_cols=208 Identities=10% Similarity=-0.013 Sum_probs=129.2
Q ss_pred chhhhhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHccccc---c----hhhHHHHHHhhhhceeeee----ccc--
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVM---S----CRMLLIMSVISFGVVVASY----GEI-- 67 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~~e~~---~----~~~~~~~~~~~~Gv~l~~~----~~~-- 67 (245)
++...++...+++|+.++...-+. .+.-+...++..++++|-. + ..-.+++++.++|+++... .|.
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~ 162 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKM 162 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 345667788899999998877554 5788888889888888643 2 3355788888899988665 222
Q ss_pred -------cchHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcCCCCCHHHHHHHHhH---HHHHHHHHHHHhh---c
Q 025964 68 -------NINWIGVVYQMGGVVGEALRL-------IFMEILVKRKGLKLNPISVMYYVSP---CSALCLFIPWIFL---E 127 (245)
Q Consensus 68 -------~~~~~G~~~~l~~~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~---~ 127 (245)
.....|+.+++++.+.++.|. ...+.... .+.++.....-+.. ++.++.-..+... .
T Consensus 163 ~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~---~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k 239 (345)
T PRK13499 163 GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA---LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK 239 (345)
T ss_pred ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122689999999999999998 33322211 13455444333332 4444333322221 1
Q ss_pred ccccc---cccc----cccchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH----HHhhhhhhhhhhhhhhhccccccc-
Q 025964 128 KPKMD---ALET----WHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIR----VAGVVKDWVVVLFSALLFADTKLT- 195 (245)
Q Consensus 128 ~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~----~~~~~~pv~~~~~~~~~~~e~~~~- 195 (245)
....+ +... +........++|+.-+..+.++...-++.+..... +...+.-+++.++|+ +++|. =+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~-K~a 317 (345)
T PRK13499 240 NKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW-KGA 317 (345)
T ss_pred CCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc-cCC
Confidence 11111 1111 11122345666766666667666666666443332 333667799999999 59998 44
Q ss_pred -----hhhhhhHHHHHHHHHHhhc
Q 025964 196 -----IINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 196 -----~~~~~G~~li~~gi~l~~~ 214 (245)
...++|.++++.|..+...
T Consensus 318 ~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 318 SRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred CccchhHHHHHHHHHHHHHHHHhh
Confidence 5678999999999887654
No 62
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.03 E-value=0.00045 Score=51.29 Aligned_cols=131 Identities=19% Similarity=0.250 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHH
Q 025964 74 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 153 (245)
Q Consensus 74 ~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (245)
.++++.+.+.-+.+..+..++.++.+ ||+...+.....+.+.+.......+.+.... .....++.+++|+++..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g---s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~---~~~~p~w~~lGG~lG~~ 76 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG---SPLVASFISFGVGFILLLIILLITGRPSLAS---LSSVPWWAYLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHHhcccccch---hccCChHHhccHHHHHH
Confidence 56788888889998888888876532 5899888888888888777766655542221 11112344557888877
Q ss_pred HHHHHHHHHhhchhHHHHHHhhh-hhhhhhhhhhh-hcc---ccccchhhhhhHHHHHHHHHH
Q 025964 154 LNLSVFLVISHTSALTIRVAGVV-KDWVVVLFSAL-LFA---DTKLTIINLFGYGIAIAGVAA 211 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~-~pv~~~~~~~~-~~~---e~~~~~~~~~G~~li~~gi~l 211 (245)
...+....+++.++......... +-+.+++++.+ +|+ ++ +++.+.+|..+++.|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~-~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRP-FSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 77777888899999776665554 66778888886 443 55 899999999999999863
No 63
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.03 E-value=3.6e-06 Score=60.21 Aligned_cols=61 Identities=16% Similarity=0.061 Sum_probs=55.7
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
.+-.+++.+++--.++...-+..++|+++++++++++|||++..+++++++..+|++++..
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 3456788899999999999999999999999999999999999999999999999998753
No 64
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.86 E-value=3.4e-05 Score=56.52 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=57.1
Q ss_pred chhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH--HcccccchhhHHHHHHhhhhceeeeec
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVA--AGLEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~--~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
+...+.+++.+++..|++.+.-+.+..++.+.+.++. ++||+++..|++++++.++|+.++..+
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 4567888999999999999999999999888888875 899999999999999999999987653
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.72 E-value=6.1e-05 Score=54.26 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=57.4
Q ss_pred chhhhhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
|+.++.+...+++++|++.+..+- ...-+.+++++.++++|+++..|++++.+.++|++.+...
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 567888889999999999988774 6899999999999999999999999999999999877543
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00028 Score=58.59 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=56.3
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec
Q 025964 4 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 4 ~~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
..-..++.|+.|.|.+..+-+-+++.+..++++..++|||++....++..++++|-.+++..
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 34456788999999999999999999999999999999999999999999999999987754
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00018 Score=50.26 Aligned_cols=63 Identities=24% Similarity=0.243 Sum_probs=55.1
Q ss_pred chhhhhhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 2 FAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
++.++.+-..+++++|++.+-.+ .....+.+++.+++++||+++..|++++.+.++|++.+..
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 46678888899999999986554 5688999999999999999999999999999999986644
No 68
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.56 E-value=0.0003 Score=57.42 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccch
Q 025964 142 LMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
+....++++....+...+.++++.+|.+..+....+.+++.++++++++++ ++..||++..+.+.|+.+.+.....
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~-ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRR-LSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcc-cchhhHHHHHHHHHHHheeecCCcc
Confidence 446677788888888899999999999999999999999999999999999 9999999999999999998766543
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.53 E-value=0.00019 Score=50.95 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=56.0
Q ss_pred chhhhhhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 2 FAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
|+.++.+...+++.+|++.+..+ ....-+.+++++++++||+++..|++++.+.++|++++..
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56677888889999999998877 4578999999999999999999999999999999987754
No 70
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.50 E-value=0.0049 Score=51.73 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHH
Q 025964 71 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLC 150 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (245)
..|..+++++.++|+......|...++ .++....++...++++.+.+....... .. ...++ ......+++
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~~~~~~-~~-~~~~~----~~~~~~g~~ 80 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIFKPWRL-RF-AKEQR----LPLLFYGVS 80 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhHHhc-cC-CHHHH----HHHHHHHHH
Confidence 568999999999999999999987763 799999999999998877665422111 11 11111 112223334
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHh
Q 025964 151 TFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 212 (245)
Q Consensus 151 ~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~ 212 (245)
....+.+.+.++++.++..++...+..|++..+++. |+ +.. ..+..+.+.|+.+.
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~-~~~--~~~~~i~~~Gv~li 135 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RR-PVD--FVWVVLAVLGLWFL 135 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CC-hHH--HHHHHHHHHHHhee
Confidence 444556677889999999999999999999987763 55 543 34456667777654
No 71
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.011 Score=44.21 Aligned_cols=138 Identities=13% Similarity=0.071 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHH
Q 025964 71 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLC 150 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (245)
+...++++.+.++...+.-...++.+.. -+|....+.....+...+....+..+...... ..... .++...+|++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~---~spl~As~isf~vGt~~L~~l~l~~~~~~~~a-~~~~~-pwW~~~GG~l 78 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYL---GSPLLASLISFLVGTVLLLILLLIKQGHPGLA-AVASA-PWWAWIGGLL 78 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hccCC-chHHHHccch
Confidence 4557788889999999888888887653 26788888888887777777666544332222 11111 2334455566
Q ss_pred HHHHHHHHHHHHhhchhH-HHHHHhhhhhhhhhhhhhhhcc----ccccchhhhhhHHHHHHHHHHhhc
Q 025964 151 TFALNLSVFLVISHTSAL-TIRVAGVVKDWVVVLFSALLFA----DTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 151 ~~~~~~~~~~~i~~~~a~-~~~~~~~~~pv~~~~~~~~~~~----e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
+...-........+.++. +....-.-+-+.+++++.+=+. .+ +++..++|+.++++|+.+.+.
T Consensus 79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~-~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRP-LNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCC-CCHHHHHHHHHHHHHHHHhcc
Confidence 665555555667777774 4455555677788888776443 44 899999999999999666543
No 72
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.41 E-value=0.00041 Score=48.83 Aligned_cols=63 Identities=22% Similarity=0.137 Sum_probs=54.8
Q ss_pred chhhhhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
|+.++.+...+++.+|++.+-.+- ....+.+.+.+++++||+++..|++++.+.++|++.+..
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 456778888899999999876554 588999999999999999999999999999999987643
No 73
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.39 E-value=0.0011 Score=47.80 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=44.5
Q ss_pred HHHHHhhchhH-HHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 158 VFLVISHTSAL-TIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 158 ~~~~i~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
...++++.+.. ..++..-+..+.+.+.++++|||+ +|+.+++|+.+++.|+...+...
T Consensus 47 ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~-~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 47 LSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES-LSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhcCC
Confidence 33445665553 334445567778889999999999 99999999999999999876544
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.36 E-value=0.00047 Score=48.81 Aligned_cols=61 Identities=13% Similarity=0.008 Sum_probs=53.3
Q ss_pred chhhhhhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 2 FAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
++.++.+...+++.+|++.+-.+ .....+.+.+.+++++||+++..|++++.+.+.|++.+
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45677888889999999986655 45788999999999999999999999999999999764
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.30 E-value=0.0019 Score=45.92 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHhhchhH-HHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 159 FLVISHTSAL-TIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 159 ~~~i~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
..++++.+.. ..++..-+..+.+.+.|+++|||+ +++.+++|+.+++.|+...+..+
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~-~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445665543 334445567778899999999999 99999999999999999976543
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.23 E-value=3.7e-05 Score=61.32 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=138.1
Q ss_pred chhhhhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHcccccchhhH----HHHHHhhhhceeeeeccc--------c
Q 025964 2 FAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRML----LIMSVISFGVVVASYGEI--------N 68 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~~e~~~~~~~----~~~~~~~~Gv~l~~~~~~--------~ 68 (245)
++..+...+-|+++++++.+.-+. .+.-+-+.+++.+.++|-.+..+. +++++.+.|+.+-+..|. +
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~ 148 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPS 148 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChH
Confidence 345666777888998888776544 467788889999999999888776 478888899998876542 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHH
Q 025964 69 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNC 148 (245)
Q Consensus 69 ~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (245)
..-.|+...+.|.+.|-.|.+..+.. +.+.+....-++.-..+..+......+.... +...+.-...|
T Consensus 149 n~kkgi~~L~iSt~GYv~yvvl~~~f------~v~g~saiLPqAiGMv~~ali~~~~~~~~~~------~K~t~~nii~G 216 (288)
T COG4975 149 NLKKGIVILLISTLGYVGYVVLFQLF------DVDGLSAILPQAIGMVIGALILGFFKMEKRF------NKYTWLNIIPG 216 (288)
T ss_pred hhhhheeeeeeeccceeeeEeeeccc------cccchhhhhHHHHHHHHHHHHHhhcccccch------HHHHHHHHhhH
Confidence 12478888899999999998887654 3566666655544333332333222211111 11123444556
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchh----hhhhHHHHHHHHHHhhcc
Q 025964 149 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTII----NLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~----~~~G~~li~~gi~l~~~~ 215 (245)
+.-...|.+++..-++.+..+.=.++.+--+++.+=|+++++|+ =|.. .++|+++++.|..+....
T Consensus 217 ~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ek-KtkkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 217 LIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEK-KTKKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred HHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEecc-CchhhhhhhhhhHHHHHHHhhhhhee
Confidence 55566677777777777777766777888899999999999999 4443 567888888887765543
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.18 E-value=0.0025 Score=53.63 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHH
Q 025964 70 NWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCL 149 (245)
Q Consensus 70 ~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (245)
..+|+.+++.++++.+...+++|+-.+|.+.+-.+.. +.. .+...+ ..|+.......
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--------------------~~~-~~~l~~--~~W~~G~~~~~ 61 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--------------------SGG-RSYLRR--PLWWIGLLLMV 61 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--------------------chh-hHHHhh--HHHHHHHHHHh
Confidence 4689999999999999999999987765432100000 000 000000 01122111112
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 150 CTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 150 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
.+ ....+.++...++.-.+.++.+.-+...+++..++||+ ++...+.|..+++.|..+....
T Consensus 62 ~g---~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~-~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 62 LG---EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK-LTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred cc---hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc-chHhHHhhHHHHHhhheeeEEe
Confidence 22 23344557778888889999999999999999999999 9999999999999999876543
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.16 E-value=0.0092 Score=42.24 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=43.8
Q ss_pred HHHHhhchh-HHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 159 FLVISHTSA-LTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 159 ~~~i~~~~a-~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
..+.|+.+. ...++..-+..+.+.+.++++|||+ +++.+++|+.+++.|+...+
T Consensus 53 s~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~-~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 53 SQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQR-LNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhc
Confidence 344666655 4456666677888899999999999 99999999999999998754
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.14 E-value=0.0013 Score=53.61 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHH
Q 025964 73 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 152 (245)
Q Consensus 73 G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
|.+.+++|+++++.+.+=.|+.- ..|++-...+......++-....+..+.+.+ . .+..++|.+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-----~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f---~------p~amlgG~lW~ 66 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-----TGDGFFFQWVMCSGIFLVGLVVNLILGFPPF---Y------PWAMLGGALWA 66 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-----CCCcHHHHHHHHHHHHHHHHHHHHhcCCCcc---e------eHHHhhhhhhh
Confidence 45677888888888777666542 2355555444443333332222222222221 1 12334444444
Q ss_pred HHHHHHHHHHhhchh-HHHHHHhhhhhhhhhhhhhh-hccccc----cchhhhhhHHHHHHHHHHhhcccchh
Q 025964 153 ALNLSVFLVISHTSA-LTIRVAGVVKDWVVVLFSAL-LFADTK----LTIINLFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a-~~~~~~~~~~pv~~~~~~~~-~~~e~~----~~~~~~~G~~li~~gi~l~~~~~~~~ 219 (245)
..|.+..-.++.++- .-..+.+..+-+.+...|-+ +||+++ -.+..++|++++++|..++...|.+.
T Consensus 67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 445555555666554 34445555566666666644 676441 35679999999999999998766544
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.11 E-value=0.00097 Score=45.94 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=32.8
Q ss_pred chhhhhhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHh
Q 025964 2 FAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVI 55 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~ 55 (245)
|+.++.+...+++++|.+.+-.+ .....+.+.+.+.+++||+++..|++++.+.
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 56778889999999999998555 5699999999999999999999999998763
No 81
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.02 E-value=0.0089 Score=51.07 Aligned_cols=138 Identities=14% Similarity=0.018 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH--hHHHHHHHHHHHH-hhcccccc-ccccccc-chHHH
Q 025964 70 NWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYV--SPCSALCLFIPWI-FLEKPKMD-ALETWHF-PPLML 144 (245)
Q Consensus 70 ~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~~-~~~~~~~-~~~~~ 144 (245)
...|+++.+++++|++.+.+-.|+ .|+ -+++.. |- ..++- ++.|+.. ....+... ....... .+...
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~-----w~wE~~-W~v~gi~~w-l~~~~~~g~~~~~~f~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKK-----WSWETM-WSVGGIFSW-LILPWLIAALLLPDFWAYYSSFSGSTLLPV 76 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCC-----CchhHH-HHHHHHHHH-HHHHHHHHHHHhhhHHHHHHhcCHHHHHHH
Confidence 357999999999999999888877 332 223333 32 11111 1222111 11112221 1111111 22345
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHh-hhhhhhhhhhhhhhcccccc-------chhhhhhHHHHHHHHHHhhccc
Q 025964 145 TLNCLCTFALNLSVFLVISHTSALTIRVAG-VVKDWVVVLFSALLFADTKL-------TIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~-~~~pv~~~~~~~~~~~e~~~-------~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.++|+.--..++..+..+++.+.+....++ -+.-+.+.+++.+++||- . ....++|.+++++|+.+..++.
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew-~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNF-DVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcccc-ccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666778888888888875554444 467788999999999965 3 2347899999999999988744
No 82
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.033 Score=47.17 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhccc---ccc---cccccccc--hHHHH
Q 025964 74 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKP---KMD---ALETWHFP--PLMLT 145 (245)
Q Consensus 74 ~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~---~~~~~~~~--~~~~~ 145 (245)
.+..+...+-.+......|...++++.+..|...++..=++-.++.....+..+.. +.. ....+... ..-..
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 34445555566666666666655544456777777666555555544443333211 111 11111111 23355
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 146 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
...++...-|...+....+.+|.+..+...++...+.++..++++++ ++..||....+...|+.+.+.
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rk-Ls~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRK-LSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhc
Confidence 66667777777788889999999999999999999999999999999 999999999999999999883
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0074 Score=42.22 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=44.9
Q ss_pred HHHhhchh-HHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 160 LVISHTSA-LTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 160 ~~i~~~~a-~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
.++|+.+. ...++..-.-.+.+.+.|+++|||+ ++..+++|..+++.|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~-l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGES-LSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCc-CCHHHHHHHHHHHHHHHHhhhc
Confidence 34566554 3456667777888899999999999 9999999999999999887654
No 84
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.94 E-value=0.0069 Score=42.63 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=44.1
Q ss_pred HHHhhchh-HHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 160 LVISHTSA-LTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 160 ~~i~~~~a-~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
.++|+.+. ...++..-+..+.+.+.|+++|||+ +|+.+++|+.+++.|+...+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~-~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGES-ASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHhhhc
Confidence 34566554 4456666677888899999999999 999999999999999988654
No 85
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.62 E-value=0.012 Score=48.42 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhh-hhhhh
Q 025964 102 LNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGV-VKDWV 180 (245)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~-~~pv~ 180 (245)
-+|.+.+.....-+.++-+.. .....+..+.+ ...++....+|++-...+...+...++.+.+++..++. ++-+.
T Consensus 10 G~~~~Q~lG~t~Gali~alv~-~~~~~p~~~~~---~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg 85 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVV-FLFRQPAFSMS---GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVG 85 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-HHHhCCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHH
Confidence 356666655554433333333 33333333210 12235567777777777888888899988877777765 56677
Q ss_pred hhhhhhhhccccccchhh----hhhHHHHHHHHHHhhcccchh
Q 025964 181 VVLFSALLFADTKLTIIN----LFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 181 ~~~~~~~~~~e~~~~~~~----~~G~~li~~gi~l~~~~~~~~ 219 (245)
+.++++++|||. -+..+ .++.++++.|+.+.++.++++
T Consensus 86 ~sl~gv~~fgEW-~~~~~~~~G~~Al~liiiGv~lts~~~~~~ 127 (269)
T PF06800_consen 86 TSLIGVLFFGEW-TTTTQKIIGFLALVLIIIGVILTSYQDKKS 127 (269)
T ss_pred HHHHHHhhcCCC-CCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 889999999998 66554 458889999999887765443
No 86
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.58 E-value=0.00042 Score=56.11 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCT 151 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (245)
.|..+..++ ..+....+..++.... +|.++-....+.-.++..|.......+.+ .++.-.. ++++=|+.+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~-----~p~e~a~~r~l~~mlit~pcliy~~~~v~-gp~g~R~---~LiLRg~mG 107 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN-----DPMELASFRLLVRMLITYPCLIYYMQPVI-GPEGKRK---WLILRGFMG 107 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc-----ChhHhhhhhhhhehhhhheEEEEEeeeee-cCCCcEE---EEEeehhhh
Confidence 567777776 6666666666666554 44444333322222222222111111111 1111111 122334444
Q ss_pred HHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 152 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 152 ~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
+..-+..|+++++.+-.-+.++....|+++.++++.+++|+ .|....+|..+.+.|+.+..+.
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~-~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEP-FTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCC-CcHHHHHHHHHhhheEEEEecC
Confidence 44445567888999999999999999999999999999999 9999999999999999987654
No 87
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.37 E-value=0.0078 Score=45.11 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=52.9
Q ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 5 TLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 5 ~~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
.....+..++++++-..++......+.+.+++.++++|+++..++.|++++++|+.+-
T Consensus 94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 4456677889999999999999999999999999999999999999999999998764
No 88
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.25 E-value=0.01 Score=47.85 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=50.2
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhce
Q 025964 6 LWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVV 60 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~ 60 (245)
+.+.-.+++..|...+.++.++.|.+.++.++++++|+++..||.++...+++..
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 4456678999999999999999999999999999999999999999998887765
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.047 Score=43.74 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccch
Q 025964 153 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
..-...+.++++.+=-+.-+-...+|+-.+++|+++.+.. .+|.......+|+.|+.++.+.+.+
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~Ks-Y~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKS-YHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhccc-ccHHHHHHHHHHHHHHHHhhccccc
Confidence 3445567788888888888889999999999999999999 9999999999999999999887543
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.85 E-value=0.027 Score=38.74 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHHHHhhchhHHH-HHHhhhhhhhhhhhhhhhccccccchhhhhhHHHH
Q 025964 157 SVFLVISHTSALTI-RVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIA 205 (245)
Q Consensus 157 ~~~~~i~~~~a~~~-~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li 205 (245)
+...++|+.+...+ .+..-+..+...+.|+++|||+ +|+.+++|+.+|
T Consensus 45 ~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~-~s~~~~~gi~lI 93 (93)
T PF00893_consen 45 FLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGES-LSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHhheeeC
Confidence 34566777776544 5566678889999999999999 999999999875
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.80 E-value=0.014 Score=49.64 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccc
Q 025964 142 LMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~ 217 (245)
...++-+..-+..++.+..++++++....++++...-+++..+|..+-+|+ +|+...++.++.+.|+++.+....
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~-ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVER-FTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcch-hhHHHHHHHHHhhccEEEEEeccc
Confidence 356677888889999999999999999999999999999999999999999 999999999999999999877644
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.27 E-value=0.032 Score=39.66 Aligned_cols=57 Identities=25% Similarity=0.145 Sum_probs=49.0
Q ss_pred hhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 6 LWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
...+++.+...+.+.+.-+. ++.-++|++.++++.+|..+++.++++.+.++|+.+.
T Consensus 55 Sv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 55 SVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 44567778888888888775 8899999999999988888999999999999999864
No 93
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.79 E-value=0.83 Score=38.84 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHH-hhccccccc---ccccccchHHHHH
Q 025964 71 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWI-FLEKPKMDA---LETWHFPPLMLTL 146 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~---~~~~~~~~~~~~~ 146 (245)
..|+++..+++++.+.+.+=.||..+ -+++.+.++ +.+++- +.+|... ....|+..+ ..+..-.+...++
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~---WsWEs~Wlv--~gi~sw-li~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG---WSWESYWLV--QGIFSW-LIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC---ccHHHHHHH--HHHHHH-HHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 67999999999999999888887622 233333333 333333 3344432 223333221 1111111112222
Q ss_pred HHHHHHHHHHHHHHHHhhchh-HHHHHHhhhhhhhhhhhhhhh-------ccccccchhhhhhHHHHHHHHHHhhcccch
Q 025964 147 NCLCTFALNLSVFLVISHTSA-LTIRVAGVVKDWVVVLFSALL-------FADTKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~a-~~~~~~~~~~pv~~~~~~~~~-------~~e~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
+..-+. ....+=..+++++- ...++..=+-.+++.++-.++ ++++ -....++|.+++++|+.+..++...
T Consensus 80 G~lWGI-GgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~-~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 80 GVLWGI-GGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATP-SGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHhc-chhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCC-CchhhhhHHHHHHHHHHHHhHHHHh
Confidence 222221 12222223444432 222222222233333332222 3334 4557899999999999998876543
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.43 E-value=0.066 Score=42.93 Aligned_cols=56 Identities=9% Similarity=-0.031 Sum_probs=50.7
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhcee
Q 025964 6 LWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVV 61 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l 61 (245)
..+-++.++|.+.....+...+.++.+.+++.++++|+++..++.+..+.+.|+.+
T Consensus 166 ~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 166 GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34567788999999999999999999999999999999999999999999998764
No 95
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.034 Score=44.81 Aligned_cols=131 Identities=10% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHH
Q 025964 73 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 152 (245)
Q Consensus 73 G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
+++.+++-++.|+.......+. +-+|.+.+....+-+.++.+..+++ ..|.. ++ ..+...+.+|..-.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~------GG~p~qQ~lGtT~GALifaiiv~~~-~~p~~----T~-~~~iv~~isG~~Ws 70 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF------GGKPYQQTLGTTLGALIFAIIVFLF-VSPEL----TL-TIFIVGFISGAFWS 70 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec------CCChhHhhhhccHHHHHHHHHHhee-ecCcc----ch-hhHHHHHHhhhHhh
Confidence 4678888899998865554433 2356666655554433333333222 22211 11 11234455555555
Q ss_pred HHHHHHHHHHhhchhHHHHHHhh-hhhhhhhhhhhhhccccccchhh----hhhHHHHHHHHHHhhccc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGV-VKDWVVVLFSALLFADTKLTIIN----LFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~-~~pv~~~~~~~~~~~e~~~~~~~----~~G~~li~~gi~l~~~~~ 216 (245)
+.+...+.+++..+.+++..++. .+-+-+.+++++.|||- .+..+ .++.++++.|+.+..+.+
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW-~t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEW-TTPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEecc-CcchhHHHHHHHHHHHHHhheEeeeec
Confidence 66777888888888887777665 56788889999999999 87764 456777888887766544
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.33 E-value=2.5 Score=35.43 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhhcC----CC-CCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHH
Q 025964 83 GEALRLIFMEILVKRKG----LK-LNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLS 157 (245)
Q Consensus 83 ~~a~~~v~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (245)
++-.+.++++++.++.- .+ -++.-+.+-+.+.+.++........ ....+... +++-....++.......+
T Consensus 25 t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~-k~~~~~~a----pl~~y~~is~tn~~s~~~ 99 (327)
T KOG1581|consen 25 TFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWW-KKELSGVA----PLYKYSLISFTNTLSSWC 99 (327)
T ss_pred HHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcc-cccCCCCC----chhHHhHHHHHhhcchHH
Confidence 44456677888776421 11 2444555666655544432221111 11111112 223334445555555666
Q ss_pred HHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchh
Q 025964 158 VFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 158 ~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~ 219 (245)
.+-++|+++=-+..+...-+-+..++++.++.+.+ .++...+-+.+|-.|+.++...+...
T Consensus 100 ~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~k-y~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 100 GYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRK-YSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCc-cCcHHHHHHHHHHhheeeEEEecCCC
Confidence 78889999999999999999999999999999999 99999999999999999988775443
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.81 E-value=0.2 Score=35.69 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=43.3
Q ss_pred HHHHHHHhhchhHHHHHH-hhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHH
Q 025964 156 LSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAA 211 (245)
Q Consensus 156 ~~~~~~i~~~~a~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l 211 (245)
..++..+++.+-+.+..+ +.+.-+++.+.++++.+|. .+...++|+.+++.|+.+
T Consensus 56 v~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~-~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 56 VLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEV-ISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcc-cchhHHHHHHHHHcCeee
Confidence 345566777776555555 5788889999998888888 899999999999999864
No 98
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.57 E-value=0.16 Score=39.70 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 154 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.++.+..++++++|+.++.+.+-+..+..++++.+++++ +....++..++.+.|+....+..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~-~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDR-FMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccc-hhhhhHHHHHHHhCcEEEEEecc
Confidence 355567789999999999999999999999999999999 99999999999999998776543
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.54 E-value=0.095 Score=43.90 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHH
Q 025964 69 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNC 148 (245)
Q Consensus 69 ~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (245)
.+.+|.++++.+++..+...++.|+-.+|.+ . .. .--.+++.. -. .++.||...+.-
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~----~---~~-------------~ra~~gg~~-yl--~~~~Ww~G~ltm 74 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAG----A---SG-------------LRAGEGGYG-YL--KEPLWWAGMLTM 74 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHh----h---hc-------------ccccCCCcc-hh--hhHHHHHHHHHH
Confidence 4467888999998888888888777665421 0 00 000111110 00 112233333333
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 149 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
..+-. ..|.+....++.-++..+.+.-+...+++..+++|+ +++...+|++++++|-.....+.
T Consensus 75 ~vGei---~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ek-l~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 75 IVGEI---ANFAAYAFAPASLVTPLGALSVIISAILASFFLKEK-LNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHhH---hhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHH-HHHhhhhheeEEecccEEEEEec
Confidence 33333 344446677888888899999999999999999999 99999999999999987776554
No 100
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=12 Score=31.54 Aligned_cols=133 Identities=11% Similarity=0.031 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHh--hcccccccccccccchHHHHHHHHHHH
Q 025964 75 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIF--LEKPKMDALETWHFPPLMLTLNCLCTF 152 (245)
Q Consensus 75 ~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
.-++.-+++..+..+..|......+.+ ....++.+|...+.+.+...-.. .+.+..+......+... .++-+
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~-~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~-----~~lf~ 88 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFP-MGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPV-----SLLFV 88 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccH-----HHHHH
Confidence 344444444445555666666554321 23444568887776665544322 12222111111111111 12223
Q ss_pred HHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 153 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 153 ~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
+..++....+++.+.....++..+.|+...+....++|.+ ++...+.....+++|...+..
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~-~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKR-PSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcC-chhhHHHHHHHHHHHHHhhcc
Confidence 3334455668999999999999999999999999999988 999999999999998877654
No 101
>PRK02237 hypothetical protein; Provisional
Probab=88.25 E-value=3.1 Score=29.14 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=38.1
Q ss_pred HHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 170 IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 170 ~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.+..+-...+.++++++.+-|++ ++...++|..+++.|..+..+.+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~-Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVR-PDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcC-CChhHHHhHHHHHHhHHHheecC
Confidence 34445556778889999999999 99999999999999998876554
No 102
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.34 E-value=3.4 Score=28.91 Aligned_cols=46 Identities=20% Similarity=0.070 Sum_probs=38.3
Q ss_pred HHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 170 IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 170 ~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.+..+-...+.++++++.+-+++ ++...++|..+++.|+.+..+.+
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~-Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVR-PDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcC-CChHHHHhHHHHHHhHHheEecC
Confidence 34445566778899999999999 99999999999999998876654
No 103
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.62 E-value=16 Score=30.46 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhc
Q 025964 146 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 214 (245)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~ 214 (245)
..+++-.......+.++..++|+..-+..-.-.++.-+++..++|.+ ++..||.|+..+..|....-.
T Consensus 91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~t-i~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRT-ITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcc-cchhhHHHHHHHHhhhheeee
Confidence 35566555556667778888888888888888889999999999999 999999999999999876543
No 104
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=83.15 E-value=2.8 Score=29.28 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec
Q 025964 27 IMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 27 ~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
...+...+..+.+.|+|+++..+++..++++|+.++.+.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 467778888999999999999999999999999887653
No 105
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=82.12 E-value=1.5 Score=37.22 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhch
Q 025964 87 RLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTS 166 (245)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (245)
.+++.|+.+++.+- .-|..++......+.+...........+.. .. +....+.-++--++............+++.+
T Consensus 32 ~~~~nK~il~~~~f-~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~-~~-~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGF-PFPITLTMLHLFCGALALLVIKVLKLVPPS-KI-SSKLPLRTLLPLGLVFCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCC-CCccHHHHHHHHHHHHHHHHHHHhcCCCCC-cc-ccccchHHHHHHHHHHHHHHHhcchhhhccc
Confidence 34455666653222 244455544444444443333322222211 11 0111122233334444444555667789999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHH
Q 025964 167 ALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAA 211 (245)
Q Consensus 167 a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l 211 (245)
....-.+..++|+++++++.++.+|+ .+...+.-...++.|+.+
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~-~s~~~~lsL~piv~GV~i 152 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKT-YSSMTYLSLLPIVFGVAI 152 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCC-CcceEEEEEEEeeeeEEE
Confidence 99999999999999999999999999 877544444444444333
No 106
>PRK02237 hypothetical protein; Provisional
Probab=81.71 E-value=3.5 Score=28.88 Aligned_cols=38 Identities=8% Similarity=-0.029 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 27 IMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 27 ~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
...+...+..+...|+|+++..+++..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 45666778899999999999999999999999987654
No 107
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=80.04 E-value=3.8 Score=28.49 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec
Q 025964 27 IMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 27 ~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
...+...+..++.-|.++++..+.+..++++|+.++..+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 456677778888999999999999999999999887764
No 108
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=74.34 E-value=71 Score=29.31 Aligned_cols=23 Identities=13% Similarity=-0.194 Sum_probs=12.6
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhc
Q 025964 167 ALTIRVAGVVKDWVVVLFSALLF 189 (245)
Q Consensus 167 a~~~~~~~~~~pv~~~~~~~~~~ 189 (245)
+....+..-..|+-+.++|.+.=
T Consensus 346 si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 346 SIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444456666677776543
No 109
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=72.40 E-value=63 Score=27.81 Aligned_cols=206 Identities=13% Similarity=0.060 Sum_probs=100.7
Q ss_pred hhhhhhhhhccchhHHHHHH-HHHHHHHHHHHHHHc-------ccccchhhHHHHHHhhhhceeeeec----c-------
Q 025964 6 LWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAG-------LEVMSCRMLLIMSVISFGVVVASYG----E------- 66 (245)
Q Consensus 6 ~~~~~~al~~~~~~~~~v~~-~~~pi~~~~~~~~~~-------~e~~~~~~~~~~~~~~~Gv~l~~~~----~------- 66 (245)
-+..-.+++|+.++..+-+. .+.-.+-.++-.++. .++-....+++++++++|+++.... |
T Consensus 87 gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~ 166 (344)
T PF06379_consen 87 GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEA 166 (344)
T ss_pred hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccch
Confidence 34455688888777765443 233333333322322 2333456788999999999886532 1
Q ss_pred ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCCCHHHHH--HHH-hHHHHHHHHHHH-Hhh--cccccc---
Q 025964 67 ININ-WIGVVYQMGGVVGEALRLIFMEILVKRK----GLKLNPISVM--YYV-SPCSALCLFIPW-IFL--EKPKMD--- 132 (245)
Q Consensus 67 ~~~~-~~G~~~~l~~~~~~a~~~v~~~~~~~~~----~~~~~~~~~~--~~~-~~~~~~~l~~~~-~~~--~~~~~~--- 132 (245)
.+++ ..|+++++.+.+..|..+.-...-..-+ ....+++... .|. ...+..+.-..+ +.. ......
T Consensus 167 ~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~ 246 (344)
T PF06379_consen 167 KEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKG 246 (344)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCcccc
Confidence 1122 4799999999999888776554321100 0111221111 111 111222111111 111 111111
Q ss_pred ccc----ccccchHHHHHHHHHHHHHHHHHHHHHhhch----hHHHHHHhhhhhhhhhhhhhhhccccc-----cchhhh
Q 025964 133 ALE----TWHFPPLMLTLNCLCTFALNLSVFLVISHTS----ALTIRVAGVVKDWVVVLFSALLFADTK-----LTIINL 199 (245)
Q Consensus 133 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----a~~~~~~~~~~pv~~~~~~~~~~~e~~-----~~~~~~ 199 (245)
+.. .+........+.++.-|.....+-..-.+.+ ...-.+...+..+++-++|+ .++|-| .-...+
T Consensus 247 d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~ 325 (344)
T PF06379_consen 247 DYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIRVLV 325 (344)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHHHHH
Confidence 110 0111123344555555544333333334444 44555566667777777776 455532 234467
Q ss_pred hhHHHHHHHHHHh
Q 025964 200 FGYGIAIAGVAAY 212 (245)
Q Consensus 200 ~G~~li~~gi~l~ 212 (245)
+|+.+++.++.+.
T Consensus 326 ~G~~vlI~s~~iv 338 (344)
T PF06379_consen 326 LGIAVLILSVVIV 338 (344)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 110
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=71.06 E-value=49 Score=26.04 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.8
Q ss_pred hhhhhhhccccccchhhhhhHHHHHH
Q 025964 182 VLFSALLFADTKLTIINLFGYGIAIA 207 (245)
Q Consensus 182 ~~~~~~~~~e~~~~~~~~~G~~li~~ 207 (245)
--+|..+|++. .=+...+|..+.+.
T Consensus 133 ~~iG~~L~t~y-~l~fe~~silLLvA 157 (198)
T PRK06638 133 KAIGILLFTDY-LLPFELASVLLLVA 157 (198)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45688888888 87788888777653
No 111
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=70.95 E-value=8.3 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=14.8
Q ss_pred hhchhHHHHHHhhhhhhhhhhhhhhh
Q 025964 163 SHTSALTIRVAGVVKDWVVVLFSALL 188 (245)
Q Consensus 163 ~~~~a~~~~~~~~~~pv~~~~~~~~~ 188 (245)
..-+....+.+-|+-|.++++++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666555544
No 112
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=70.89 E-value=15 Score=27.12 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=41.2
Q ss_pred hhhhhhhhhhccchhHHHHHHHHH-HHHHHHHHHH----HcccccchhhHHHHHHhhhhcee
Q 025964 5 TLWLGNTAYLYISVAFAQMLKAIM-PVAVFILGVA----AGLEVMSCRMLLIMSVISFGVVV 61 (245)
Q Consensus 5 ~~~~~~~al~~~~~~~~~v~~~~~-pi~~~~~~~~----~~~e~~~~~~~~~~~~~~~Gv~l 61 (245)
...+..+....++++....+.-+. -+...+++.+ ..|++++.+|.+++.+.++|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344566677778777777776554 4455555553 36789999999999999999864
No 113
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=68.47 E-value=5.5 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.6
Q ss_pred hhhhhhhccccccchhhhhhHHHHHHHHH
Q 025964 182 VLFSALLFADTKLTIINLFGYGIAIAGVA 210 (245)
Q Consensus 182 ~~~~~~~~~e~~~~~~~~~G~~li~~gi~ 210 (245)
..++++.++|+ +.+.+..|..++++++.
T Consensus 77 ~~Fsv~~l~E~-l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEP-LKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCC-ccHHHHHHHHHHHHhhh
Confidence 35667899999 99999999999887754
No 114
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=68.29 E-value=13 Score=25.97 Aligned_cols=33 Identities=18% Similarity=-0.040 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 30 VAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 30 i~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
..-+.++.+++||++++....+.+...+++.++
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 344557788999999999999999887776543
No 115
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=63.04 E-value=7.7 Score=32.62 Aligned_cols=71 Identities=10% Similarity=-0.030 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHh-hhhhhhhhhhhhhhccccccc--hhhhhhHHHHHHHHHHhhcc
Q 025964 143 MLTLNCLCTFALNLSVFLVISHTSALTIRVAG-VVKDWVVVLFSALLFADTKLT--IINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~-~~~pv~~~~~~~~~~~e~~~~--~~~~~G~~li~~gi~l~~~~ 215 (245)
....+|+.--+.++...+++...+-+.+-+++ -+.-++++++.++. +.+ .+ ..-+.|+.++++++++-...
T Consensus 74 ~A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~-~n~a~iLF~GV~cf~iAI~lga~a 147 (336)
T PF07168_consen 74 FAMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPK-INRAEILFPGVACFLIAIILGAAA 147 (336)
T ss_pred HHHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCC-CCCceEEEccHHHHHHHHHHHHHH
Confidence 34555555555666666665554443222222 23334455555543 444 54 35677888888888776543
No 116
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=59.58 E-value=0.93 Score=37.01 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 154 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 154 ~~~~~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
.|+....+.++++-+.+....+-..+...+++|++++.+ --+.++.|.++++.|+......
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktr-Yrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTR-YRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHH-HhhheeeeEEeEecceEEEEEe
Confidence 344445667889999999999999999999999999999 9999999999999999776543
No 117
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=58.68 E-value=10 Score=30.55 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=34.8
Q ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHh
Q 025964 7 WLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVI 55 (245)
Q Consensus 7 ~~~~~al~~~~~~~~~v~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~ 55 (245)
.+.-|+++.++...+.+..++.-.-.++.+.+++.|+.++....++.++
T Consensus 239 y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillG 287 (309)
T COG5070 239 YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLG 287 (309)
T ss_pred hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHH
Confidence 3455677777778888888777777777777777777777766665543
No 118
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=54.64 E-value=9.4 Score=31.73 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=43.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhHhh
Q 025964 169 TIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEAS 222 (245)
Q Consensus 169 ~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~~~ 222 (245)
-+-++..-.++..+.+++++.|.+ -+..|+...+++-+|+.+.+..+.++.+.
T Consensus 93 lHiIfRsgsll~nM~~g~il~~k~-Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 93 LHIIFRSGSLLANMILGWILLGKR-YSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EEEEEecCcHHHHHHHHHHhccce-eehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 344555667888999999999999 99999999999999999998876654443
No 119
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=53.51 E-value=1.6e+02 Score=26.08 Aligned_cols=12 Identities=33% Similarity=0.232 Sum_probs=5.3
Q ss_pred hcccccccCCCC
Q 025964 233 QLTATTTSSTSE 244 (245)
Q Consensus 233 ~~~~~~~~~~~~ 244 (245)
++++++.+..||
T Consensus 444 ~~~~~~~~~~~~ 455 (455)
T TIGR00892 444 KKDAEGDSRESE 455 (455)
T ss_pred ccccccccccCC
Confidence 344444444444
No 120
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.55 E-value=21 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=24.7
Q ss_pred hhhhhhhccccccchhhhhhHHHHHHHHHH
Q 025964 182 VLFSALLFADTKLTIINLFGYGIAIAGVAA 211 (245)
Q Consensus 182 ~~~~~~~~~e~~~~~~~~~G~~li~~gi~l 211 (245)
+.++.+.++|+ +.|.++.|..++.+|+..
T Consensus 84 v~Fsvfyl~ep-l~~~~l~a~~~i~gav~f 112 (116)
T COG3169 84 VPFSVFYLKEP-LRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHHHH
Confidence 35788899999 999999999998887754
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=49.48 E-value=16 Score=25.48 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=35.1
Q ss_pred HHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 171 RVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 171 ~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
+-.+-...+.++.+.+++=+.+ ++...++|..+++.|..+....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~-pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVR-PDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcC-CcHHHhhhHHHHHhceeeeEeC
Confidence 3344456678888888888888 9999999999999997766554
No 122
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=47.00 E-value=2.1e+02 Score=25.58 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcccccchhhHHHHHHhhhhce--eeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025964 29 PVAVFILGVAAGLEVMSCRMLLIMSVISFGVV--VASYGEININWIGVVYQMGGVVGEALRLIFMEILVKR 97 (245)
Q Consensus 29 pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~--l~~~~~~~~~~~G~~~~l~~~~~~a~~~v~~~~~~~~ 97 (245)
+..+.++-=++.|.|+...|++-+.++.+=-. +++..+. -..+....+.++.|-.+-..+.+...|+
T Consensus 308 TF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh--i~F~~AYliAa~a~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 308 TFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEH--IGFNLAYLIAALACIGLISLYLSSVLKS 376 (430)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333345678888889865555444333 3333331 1234567777888888888888888775
No 123
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=46.88 E-value=6.4 Score=32.65 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHH--HHHHHcccccchhhHHHHHHhhhhceeeeecc--ccchHHHHHHHHHHHHHHHHHHHHHH
Q 025964 17 SVAFAQMLKAIMPVAVFI--LGVAAGLEVMSCRMLLIMSVISFGVVVASYGE--ININWIGVVYQMGGVVGEALRLIFME 92 (245)
Q Consensus 17 ~~~~~~v~~~~~pi~~~~--~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~--~~~~~~G~~~~l~~~~~~a~~~v~~~ 92 (245)
+-+...++.+...+++.+ +-.+|.|+-+...-.+++++.+.-+.+..... .+.-+.|+++.+++.+ .|+...+.-
T Consensus 48 t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~l-LaL~vW~Ym 126 (381)
T PF05297_consen 48 TQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCL-LALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333344555444333332 33344444466666777776666555544332 2334567665555433 232222222
Q ss_pred HHhhhcCCCCCHHHHHHHH
Q 025964 93 ILVKRKGLKLNPISVMYYV 111 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ 111 (245)
.+.|+. ..+-++++.++
T Consensus 127 ~lLr~~--GAs~WtiLaFc 143 (381)
T PF05297_consen 127 WLLREL--GASFWTILAFC 143 (381)
T ss_dssp -------------------
T ss_pred HHHHHh--hhHHHHHHHHH
Confidence 233432 34667766554
No 124
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=46.50 E-value=18 Score=24.20 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.7
Q ss_pred cchhhhhhHHHHHHHHHHhhccc
Q 025964 194 LTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 194 ~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
+++..++|..+++.|..+|..+.
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~ 27 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRF 27 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999996543
No 125
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=44.88 E-value=86 Score=20.41 Aligned_cols=53 Identities=8% Similarity=0.118 Sum_probs=30.0
Q ss_pred cccchhhHHHHHHhhhhceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025964 42 EVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKR 97 (245)
Q Consensus 42 e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~~~a~~~v~~~~~~~~ 97 (245)
-|.|..+++|.++.++=++-..+..-..++. ..++-+++......+.++..++
T Consensus 18 trVT~n~~vg~~lt~~Li~ASvykGyt~~~~---ii~iD~~Sl~aGf~~a~~m~~~ 70 (74)
T PF09964_consen 18 TRVTYNHYVGTILTVALIAASVYKGYTHTWW---IIFIDAVSLTAGFLYAKKMLKH 70 (74)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999998887655444333333333332 3344445555555666666554
No 126
>PF15102 TMEM154: TMEM154 protein family
Probab=44.13 E-value=17 Score=27.04 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHhhcccchh
Q 025964 199 LFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 199 ~~G~~li~~gi~l~~~~~~~~ 219 (245)
++++++++..++++.+.|+++
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHHHheeEEeecc
Confidence 555566666677766655443
No 127
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.95 E-value=1.6e+02 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025964 73 GVVYQMGGVVGEALRLIFMEILVK 96 (245)
Q Consensus 73 G~~~~l~~~~~~a~~~v~~~~~~~ 96 (245)
|+.-.++.++..++...+..++..
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555444444444444444443
No 128
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=42.53 E-value=68 Score=19.43 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=33.8
Q ss_pred hHHHHHHhhhhceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025964 48 MLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKR 97 (245)
Q Consensus 48 ~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~~~~~~a~~~v~~~~~~~~ 97 (245)
..++..+.++|+++...+.. |....+++....|......|+..++
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45778888888888776542 5667777777888888888887654
No 129
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.24 E-value=34 Score=23.61 Aligned_cols=30 Identities=17% Similarity=-0.015 Sum_probs=24.4
Q ss_pred HHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 33 FILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 33 ~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
..++.+.+||++++..+.+.++...|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 347788899999999999988888777543
No 130
>PRK10655 potE putrescine transporter; Provisional
Probab=40.44 E-value=2.1e+02 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHhhcccchhH
Q 025964 197 INLFGYGIAIAGVAAYNNHKLKKE 220 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~~~~~ 220 (245)
....|..+++.|..+|-..++|.+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRFE 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345678888899888876554433
No 131
>PF15471 TMEM171: Transmembrane protein family 171
Probab=38.87 E-value=28 Score=28.73 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHhhcccchh
Q 025964 197 INLFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~~~~ 219 (245)
.|+.|-++++.|.+.+..++.|+
T Consensus 162 lQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 162 LQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred hhhhhhHHHHHhhhhhheeeeee
Confidence 69999999999999998766543
No 132
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=38.25 E-value=40 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=15.2
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhc
Q 025964 165 TSALTIRVAGVVKDWVVVLFSALLF 189 (245)
Q Consensus 165 ~~a~~~~~~~~~~pv~~~~~~~~~~ 189 (245)
.+..+.+++.|+-|++.++.+.++-
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666777776666544
No 133
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=37.60 E-value=19 Score=25.24 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=40.4
Q ss_pred hhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceee
Q 025964 7 WLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 62 (245)
Q Consensus 7 ~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 62 (245)
.++++-++..|.+.+.-. .++.-.+++..+..+..|...++.+++..+.++|+.+.
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 345556666666655433 35678899999988877777788888999999988654
No 134
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=37.22 E-value=53 Score=24.72 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=7.5
Q ss_pred HHHHHhhhhhhhhhhhh
Q 025964 169 TIRVAGVVKDWVVVLFS 185 (245)
Q Consensus 169 ~~~~~~~~~pv~~~~~~ 185 (245)
+.+++.|+-|++.++.+
T Consensus 76 kaa~lvYllPLl~li~g 92 (154)
T PRK10862 76 RSALLVYMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 135
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=37.12 E-value=1.9e+02 Score=25.58 Aligned_cols=39 Identities=5% Similarity=0.070 Sum_probs=17.7
Q ss_pred hhhhhhhhhhhhhc-cccccchhhhhhHHHHHHHHHHhhccc
Q 025964 176 VKDWVVVLFSALLF-ADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 176 ~~pv~~~~~~~~~~-~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.-|+++++...++. ... .. ....+...+..|..+|...+
T Consensus 389 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~y~~~~ 428 (445)
T PRK10644 389 AVTLIAFVYCIWAVVGSG-AK-EVMWSFVTLMVITAFYALNY 428 (445)
T ss_pred HHHHHHHHHHHHHHHHhh-HH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443 222 22 23333444556666665443
No 136
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=36.91 E-value=2e+02 Score=22.36 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=20.1
Q ss_pred hhhhhhhccccccchhhhhhHHHHHHHH
Q 025964 182 VLFSALLFADTKLTIINLFGYGIAIAGV 209 (245)
Q Consensus 182 ~~~~~~~~~e~~~~~~~~~G~~li~~gi 209 (245)
--+|..++.|. .-+....|..+.++=+
T Consensus 132 ~~iG~~Lyt~Y-~l~fe~~s~lLLvAmI 158 (186)
T MTH00057 132 EVLGRVLYTDY-YYLFILASFILLVAMI 158 (186)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35688888888 8888888887766433
No 137
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=36.37 E-value=28 Score=20.08 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=7.1
Q ss_pred cchhhhhhHHHHHHHH
Q 025964 194 LTIINLFGYGIAIAGV 209 (245)
Q Consensus 194 ~~~~~~~G~~li~~gi 209 (245)
++|..++=.++++.|+
T Consensus 2 p~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGI 17 (49)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3454444344444444
No 138
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=34.91 E-value=2.1e+02 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHhhcccc
Q 025964 197 INLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~~ 217 (245)
....|..+...|..+|.+.++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455688888899888876443
No 139
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.69 E-value=39 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHHHHHHhhcccch
Q 025964 196 IINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 196 ~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
-.-++++.++++|.++|....++
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788888888888765443
No 140
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.60 E-value=2.9e+02 Score=25.04 Aligned_cols=99 Identities=7% Similarity=-0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh---chhHHHHHHhhhhhhhhhhhhhhhccc-----cccchhhhhhHHHHHHHHHHhhccc
Q 025964 145 TLNCLCTFALNLSVFLVISH---TSALTIRVAGVVKDWVVVLFSALLFAD-----TKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~---~~a~~~~~~~~~~pv~~~~~~~~~~~e-----~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
++-.+..++..+..++..++ -.-....++..+.-+.=.++-++=-++ . ++..|++.+.++++|+.+..+.+
T Consensus 198 LYEsi~~lllf~iLl~l~rk~~~~~G~lf~lYli~Ygi~RF~iEflR~d~~~~~~g-l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 198 LYELIWNVLVFVALIYIDRRFIIGHGRLFGFYVAFYCAGRFCVELLRDDPATLIAG-IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhccCchhhhcC-ccHHHHHHHHHHHHHHHHHHHhh
Q ss_pred chhHhhccCCCCcchhhcccccccCCCC
Q 025964 217 LKKEASRAISDDSQQTQLTATTTSSTSE 244 (245)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (245)
++++++...+...-...+.....+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (460)
T PRK13108 277 KGREAPGALRGSEYVVDEALEREPAELA 304 (460)
T ss_pred ccCCCccccCCcccccCcccCCCCCCCC
No 141
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=30.81 E-value=51 Score=24.13 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=8.4
Q ss_pred hhhhhHHHHHHHHHHh
Q 025964 197 INLFGYGIAIAGVAAY 212 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~ 212 (245)
..++|..+...|+...
T Consensus 88 ~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555665443
No 142
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=30.28 E-value=2.7e+02 Score=21.78 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=26.3
Q ss_pred cccccchhhHHHHHHhhhhceeeeeccccc----hHHHHHHHHHH
Q 025964 40 GLEVMSCRMLLIMSVISFGVVVASYGEINI----NWIGVVYQMGG 80 (245)
Q Consensus 40 ~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~----~~~G~~~~l~~ 80 (245)
+|++-......+++...+|+.....+..+. ...|..+.+.+
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~G 59 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISG 59 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455556667789999999998877654332 24566554443
No 143
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=29.85 E-value=4e+02 Score=23.69 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhhhhccccccchh--hhhhHHHHHHHHHHhhcccc
Q 025964 175 VVKDWVVVLFSALLFADTKLTII--NLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 175 ~~~pv~~~~~~~~~~~e~~~~~~--~~~G~~li~~gi~l~~~~~~ 217 (245)
.+..+..++.-...=+++ -+.. ..++.++++.++..|...++
T Consensus 162 ~l~Sl~~i~tka~~~~~~-~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 162 TLTSLLRILTKAAFSDSR-TSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred HHHHHHHHHHHHhcCCCC-ceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 344444444434344444 4443 56667777888888884443
No 144
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=29.61 E-value=79 Score=16.56 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=8.9
Q ss_pred cchhhhhhHHHHHHHH
Q 025964 194 LTIINLFGYGIAIAGV 209 (245)
Q Consensus 194 ~~~~~~~G~~li~~gi 209 (245)
-.+..++|+.++..+.
T Consensus 10 ~~~~~~~G~~l~~~~~ 25 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGG 25 (34)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4556777774444433
No 145
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=28.87 E-value=56 Score=19.26 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHhhcccchh
Q 025964 197 INLFGYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~~~~ 219 (245)
..++-..++++|++++.+.++++
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 34444568889999988776543
No 146
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=28.05 E-value=65 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025964 68 NINWIGVVYQMGGVVGEALRLIFMEILVK 96 (245)
Q Consensus 68 ~~~~~G~~~~l~~~~~~a~~~v~~~~~~~ 96 (245)
+.+.+|.++.-.-.+-|++|.++.+.+-+
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~e 130 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDE 130 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCC
Confidence 44577877777778889999999987643
No 147
>COG1971 Predicted membrane protein [Function unknown]
Probab=27.48 E-value=82 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=27.9
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHH-HHHH
Q 025964 167 ALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIA-IAGV 209 (245)
Q Consensus 167 a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li-~~gi 209 (245)
+.+.+++..+.|+.+...+.++=+-. -.+.+|+|..+. +.|.
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~i-~~~~~wigf~lL~~lG~ 82 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTFI-AEWAHWIGFVLLIILGL 82 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45566677777888888887776555 566787765543 3444
No 148
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.31 E-value=77 Score=19.75 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHhhcccchhH
Q 025964 197 INLFGYGIAIAGVAAYNNHKLKKE 220 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~~~~~ 220 (245)
...+-+.++++|++++.+.+.++.
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh
Confidence 344556777888888777655433
No 149
>PHA03049 IMV membrane protein; Provisional
Probab=26.90 E-value=59 Score=20.58 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHhhcccch
Q 025964 196 IINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 196 ~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
-..++++.++++|.++|...+++
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777888888888765543
No 150
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=26.72 E-value=2.3e+02 Score=21.66 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025964 71 WIGVVYQMGGVVGEALR 87 (245)
Q Consensus 71 ~~G~~~~l~~~~~~a~~ 87 (245)
..|+.+-++-.=|--+.
T Consensus 102 ~LGIfLPLITTNCaVLg 118 (193)
T COG4657 102 LLGIFLPLITTNCAVLG 118 (193)
T ss_pred HHHHhhhhHhhchHHHH
Confidence 56777766654444443
No 151
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=26.46 E-value=28 Score=21.50 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=17.4
Q ss_pred cchhhhhhHHHHHHHHHHhhccc
Q 025964 194 LTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 194 ~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.+...++|..++..+.+.++...
T Consensus 16 ~tV~~Lig~T~~~g~~~~~~~y~ 38 (59)
T PF14880_consen 16 TTVLGLIGFTVYGGGLTVYTVYS 38 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888877544
No 152
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=25.92 E-value=60 Score=18.23 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=21.1
Q ss_pred hhhhhhhhhhhccccccchhhhhhHHHHHHHHH
Q 025964 178 DWVVVLFSALLFADTKLTIINLFGYGIAIAGVA 210 (245)
Q Consensus 178 pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~ 210 (245)
|+.+.+.|++++=-| --....+|.-+++.|+.
T Consensus 1 pi~aliaGiLiLi~P-rllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 1 PILALIAGILILIMP-RLLNYIVAIYLIVIGLL 32 (39)
T ss_pred CHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456666666666655 44556777777777765
No 153
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=25.92 E-value=1.7e+02 Score=17.98 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=14.5
Q ss_pred HHHHHhhhhceeeeeccccchHHH
Q 025964 50 LIMSVISFGVVVASYGEININWIG 73 (245)
Q Consensus 50 ~~~~~~~~Gv~l~~~~~~~~~~~G 73 (245)
.+++....|+.+...++.......
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~ 25 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALA 25 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356667777777776655444333
No 154
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=25.64 E-value=4.7e+02 Score=23.08 Aligned_cols=20 Identities=0% Similarity=-0.197 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHHhhccc
Q 025964 197 INLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~ 216 (245)
+..++..+.+.++.++.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~ 425 (435)
T PRK10435 406 SFELAGTFIVSLIILMFYAR 425 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 155
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.61 E-value=75 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=19.1
Q ss_pred ccccchhhHHHHHHhhhhceeeeec
Q 025964 41 LEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 41 ~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
+.|+++.+-.++.+.++|++++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567888888999999998876543
No 156
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=24.50 E-value=4.1e+02 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHhhccc
Q 025964 197 INLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~ 216 (245)
....|..+...|+.+|.+.+
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~ 431 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARAR 431 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999886644
No 157
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.00 E-value=7.2 Score=32.38 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=44.2
Q ss_pred HHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 158 VFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 158 ~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
...++++.+..-.-+-..+..++++++.+++++++ -+..-..++.+|+.|..+-.
T Consensus 119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqk-Ts~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQK-TSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred cceehhhcceEEEEeccchhhhHHHHhHHhhcccc-cccccceeehhheehheecc
Confidence 44567777776666666788899999999999999 88888888999888876643
No 158
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=23.70 E-value=2e+02 Score=24.50 Aligned_cols=58 Identities=7% Similarity=0.042 Sum_probs=43.3
Q ss_pred HHHHHhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 158 VFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 158 ~~~~i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
.++..++++-+-.++...-.+++..++|..+==|+ ++|.-..=..+|-+|+.+..+.+
T Consensus 101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk-~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEK-FRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhhheeEEEecc
Confidence 45666777777777777777888888888777788 88887777777777777776654
No 159
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=22.30 E-value=4e+02 Score=23.56 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhcccch
Q 025964 200 FGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 200 ~G~~li~~gi~l~~~~~~~ 218 (245)
.+..++..|+.+|-..+++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred HHHHHHHHhhhHHhheech
Confidence 5777888888887765544
No 160
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.28 E-value=2e+02 Score=17.57 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHh
Q 025964 24 LKAIMPVAVFILGVAAGLEVMSCRMLLIMSVI 55 (245)
Q Consensus 24 ~~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~ 55 (245)
.....-...+++-+++-||+.+.|-..+++++
T Consensus 8 ~Y~ig~~is~~iT~flskDs~~iRllsa~lIG 39 (55)
T PF10753_consen 8 FYAIGAVISALITFFLSKDSLRIRLLSAILIG 39 (55)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34455667778888889998888877776654
No 161
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=21.22 E-value=1.2e+02 Score=16.34 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHcccccchhh
Q 025964 23 MLKAIMPVAVFILGVAAGLEVMSCRM 48 (245)
Q Consensus 23 v~~~~~pi~~~~~~~~~~~e~~~~~~ 48 (245)
++....-+.-.++-.++.|||+.+.+
T Consensus 7 iLDgiL~iYgiiiT~L~~R~K~~~~~ 32 (33)
T PF11628_consen 7 ILDGILFIYGIIITALYCREKFSKSK 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34444555566666777888887653
No 162
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=21.02 E-value=5.1e+02 Score=21.86 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=45.6
Q ss_pred HhhchhHHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccc
Q 025964 162 ISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 162 i~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~ 217 (245)
+.+.+=-+--++.+.+-+-.++-|+++=|.+ -.+..++.+.+...|..++..+..
T Consensus 127 lgYLNYPtQviFKccKliPVmiggifIqGkR-Y~v~d~~aA~lm~lGli~FTLADs 181 (367)
T KOG1582|consen 127 LGYLNYPTQVIFKCCKLIPVMIGGIFIQGKR-YGVHDYIAAMLMSLGLIWFTLADS 181 (367)
T ss_pred cccccCcHHHHHHhhhhhhhhheeeeecccc-ccHHHHHHHHHHHHHHHhhhhccc
Confidence 4455444567788888888899999999999 999999999999999999987653
No 163
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.94 E-value=1.1e+02 Score=17.80 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHhhcccch
Q 025964 198 NLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 198 ~~~G~~li~~gi~l~~~~~~~ 218 (245)
..+-..++++|++++.+.+++
T Consensus 14 ~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHcccc
Confidence 334456667788877775543
No 164
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=20.83 E-value=2.8e+02 Score=23.94 Aligned_cols=41 Identities=2% Similarity=-0.037 Sum_probs=22.6
Q ss_pred hhhhhhhhhhhhcc---c-------cccchhhhhhHHHHHHHHHHhhcccch
Q 025964 177 KDWVVVLFSALLFA---D-------TKLTIINLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 177 ~pv~~~~~~~~~~~---e-------~~~~~~~~~G~~li~~gi~l~~~~~~~ 218 (245)
..+.+.+++.++++ | + -.+.+++...+++..+......+++
T Consensus 260 gs~~G~viGalll~~l~~~l~~~~~~-~~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 260 GTIIGAVLGAYFLTQIDSVLVLLRIP-AWWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 34555556655554 1 2 2345677777777766665544433
No 165
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.19 E-value=1.6e+02 Score=16.22 Aligned_cols=20 Identities=15% Similarity=-0.230 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025964 73 GVVYQMGGVVGEALRLIFME 92 (245)
Q Consensus 73 G~~~~l~~~~~~a~~~v~~~ 92 (245)
=++.-++.+.+||+|++..-
T Consensus 7 iVl~Pil~A~~Wa~fNIg~~ 26 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGRL 26 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35677888999999987643
Done!