Query 025964
Match_columns 245
No_of_seqs 142 out of 1326
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 5.9E-09 2E-13 76.1 5.5 67 149-216 38-105 (137)
2 3b5d_A Multidrug transporter E 98.5 1.7E-07 5.7E-12 65.9 4.9 64 2-65 40-104 (110)
3 3b5d_A Multidrug transporter E 98.4 1.3E-06 4.3E-11 61.4 7.7 64 151-215 40-104 (110)
4 2i68_A Protein EMRE; transmemb 98.3 2.3E-07 7.8E-12 67.6 3.3 63 2-64 40-103 (137)
5 3l1l_A Arginine/agmatine antip 72.9 5.4 0.00018 33.8 5.6 22 197-218 409-430 (445)
6 3rko_J NADH-quinone oxidoreduc 58.8 54 0.0018 24.5 8.0 24 182-206 127-150 (184)
7 2jo1_A Phospholemman; FXYD1, N 58.0 8.6 0.00029 23.7 2.7 26 198-223 21-46 (72)
8 2jp3_A FXYD domain-containing 54.0 17 0.00058 22.2 3.5 24 198-221 22-45 (67)
9 2zxe_G FXYD10, phospholemman-l 39.6 19 0.00067 22.4 2.3 21 198-218 24-44 (74)
10 4aps_A DI-OR tripeptide H+ sym 17.7 4.2E+02 0.014 21.8 10.2 157 75-235 327-491 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.80 E-value=5.9e-09 Score=76.07 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHH-hhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhccc
Q 025964 149 LCTFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~a~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~ 216 (245)
++.....+++..++++.++..+..+ ..+.|+++.++|+++|||+ +++.+++|+.+++.|+.+.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~-ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344445567788999999988887 8999999999999999999 99999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.46 E-value=1.7e-07 Score=65.91 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=58.5
Q ss_pred chhhhhhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeeec
Q 025964 2 FAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 65 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 65 (245)
++.++.+...++++.|++.+..+ ..+.|+++++++++++||+++..|++++.+.++|++++...
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45677888899999999999888 89999999999999999999999999999999999887654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.38 E-value=1.3e-06 Score=61.37 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHH-hhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcc
Q 025964 151 TFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 215 (245)
Q Consensus 151 ~~~~~~~~~~~i~~~~a~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~ 215 (245)
......++..++|+.+..++-.+ ..+.|+.+.++++++|||+ +|+.+++|+.+++.|+...+..
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 33344556678999999888777 8999999999999999999 9999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.34 E-value=2.3e-07 Score=67.62 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=47.0
Q ss_pred chhhhhhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHhhhhceeeee
Q 025964 2 FAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 64 (245)
Q Consensus 2 ~~~~~~~~~~al~~~~~~~~~v~-~~~~pi~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 64 (245)
++.++.+.+.++++.|++.+..+ .++.|++++++++++++|+++..+++++++.++|++++..
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45678889999999999988888 8999999999999999999999999999999999987754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=72.95 E-value=5.4 Score=33.82 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHhhcccch
Q 025964 197 INLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 197 ~~~~G~~li~~gi~l~~~~~~~ 218 (245)
....|..++..|+.+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4556788888898888776544
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=58.77 E-value=54 Score=24.46 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=19.8
Q ss_pred hhhhhhhccccccchhhhhhHHHHH
Q 025964 182 VLFSALLFADTKLTIINLFGYGIAI 206 (245)
Q Consensus 182 ~~~~~~~~~e~~~~~~~~~G~~li~ 206 (245)
--+|..+|++. +-+.+..+..+.+
T Consensus 127 ~~iG~~Lft~Y-~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPY-VLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 46788899999 8888999888765
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=58.03 E-value=8.6 Score=23.71 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHhhcccchhHhhc
Q 025964 198 NLFGYGIAIAGVAAYNNHKLKKEASR 223 (245)
Q Consensus 198 ~~~G~~li~~gi~l~~~~~~~~~~~~ 223 (245)
.++++++.+.|+++....+-+.+.++
T Consensus 21 LifA~vLfi~GI~iilS~KckCk~~q 46 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRCKFNQ 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCC
Confidence 45566677777777655544433333
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=53.97 E-value=17 Score=22.17 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHhhcccchhHh
Q 025964 198 NLFGYGIAIAGVAAYNNHKLKKEA 221 (245)
Q Consensus 198 ~~~G~~li~~gi~l~~~~~~~~~~ 221 (245)
.++++++.+.|+++....+-+.+.
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCcccccC
Confidence 455667777787776655544433
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=39.64 E-value=19 Score=22.35 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHhhcccch
Q 025964 198 NLFGYGIAIAGVAAYNNHKLK 218 (245)
Q Consensus 198 ~~~G~~li~~gi~l~~~~~~~ 218 (245)
.+.++++.+.|+++....|-+
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 455667777787776655433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=17.74 E-value=4.2e+02 Score=21.84 Aligned_cols=157 Identities=6% Similarity=-0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHH
Q 025964 75 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFAL 154 (245)
Q Consensus 75 ~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (245)
...+...+..-+...+.++..+| +......+.....+.++...................+........+.++.....
T Consensus 327 ~~~~~~~~~~~~~~~l~~r~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 327 LNPLFIMLYTPFFAWLWTAWKKN---QPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhchh--------HHHHHHhhhhhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHhhcccchhHhhccCC
Q 025964 155 NLSVFLVISHTSA--------LTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEASRAIS 226 (245)
Q Consensus 155 ~~~~~~~i~~~~a--------~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~~~~~~~~~~~~~~ 226 (245)
............| ........+-..++..+.-++.+.. .....+....+.+.+........++.+++.++.
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS-EVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQGV 482 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-TTHHHHHTHHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CCcchhhcc
Q 025964 227 DDSQQTQLT 235 (245)
Q Consensus 227 ~~~~~~~~~ 235 (245)
+++++..++
T Consensus 483 ~~~~~~~~~ 491 (491)
T 4aps_A 483 EGSENLYFQ 491 (491)
T ss_dssp ---------
T ss_pred cccccccCC
Done!