Query 025964
Match_columns 245
No_of_seqs 142 out of 1326
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 21:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025964.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025964hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 37.4 77 0.0056 23.8 12.8 41 72-117 61-101 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 35.8 67 0.0049 22.6 11.6 31 179-210 95-125 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 22.3 35 0.0026 15.0 2.9 16 72-87 3-18 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 17.0 69 0.0051 22.0 4.1 34 179-213 77-110 (199)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 10.7 86 0.0063 14.0 2.1 14 33-46 16-29 (30)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 10.4 35 0.0025 20.5 0.5 19 201-219 27-45 (91)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 6.0 1.3E+02 0.0098 17.9 1.9 19 199-217 36-54 (100)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.2 1.8E+02 0.013 17.6 2.2 17 200-216 43-59 (107)
9 d1ppjd2 f.23.11.1 (D:196-241) 5.1 1.2E+02 0.0084 15.6 0.9 22 195-216 9-30 (46)
10 d1uptb_ a.193.1.1 (B:) Golgi a 4.5 1.8E+02 0.013 15.6 1.5 21 33-53 11-31 (58)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=37.43 E-value=77 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHhHHHHH
Q 025964 72 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSAL 117 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (245)
.|.+.... .+.+++......++.+| ..+...+.....+.++
T Consensus 61 ~g~~~s~~-~~~~~~~~~~~G~l~Dr----~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 61 LGFALSGI-SIAYGFSKFIMGSVSDR----SNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHH
Confidence 45444432 34455555555666655 3444444444443333
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=35.81 E-value=67 Score=22.59 Aligned_cols=31 Identities=19% Similarity=0.022 Sum_probs=22.5
Q ss_pred hhhhhhhhhhccccccchhhhhhHHHHHHHHH
Q 025964 179 WVVVLFSALLFADTKLTIINLFGYGIAIAGVA 210 (245)
Q Consensus 179 v~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~ 210 (245)
+.+.+.+..+.+.+ ++....+|..+.++-..
T Consensus 95 ~~~~~~~l~~~g~~-~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLT-NDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCC-BCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-hhhhhcccccchhhhhh
Confidence 35566778888999 99999888777554433
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.33 E-value=35 Score=15.04 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025964 72 IGVVYQMGGVVGEALR 87 (245)
Q Consensus 72 ~G~~~~l~~~~~~a~~ 87 (245)
+|.+..-++.+.||.|
T Consensus 3 lgli~~tl~glf~aay 18 (27)
T d2e74g1 3 LGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 5788888888989886
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.03 E-value=69 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=22.6
Q ss_pred hhhhhhhhhhccccccchhhhhhHHHHHHHHHHhh
Q 025964 179 WVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 213 (245)
Q Consensus 179 v~~~~~~~~~~~e~~~~~~~~~G~~li~~gi~l~~ 213 (245)
+........++|.+ ++.....+..+.++...-+.
T Consensus 77 i~~~~~~m~~~g~~-l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 77 LLGTFAVLAAFGFS-INTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp HHHHHHHHHTTTCC-SCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCc-hHHHHHHHHHHHHHHhcccH
Confidence 34444456788888 89888887777666555443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.69 E-value=86 Score=13.98 Aligned_cols=14 Identities=7% Similarity=-0.294 Sum_probs=8.4
Q ss_pred HHHHHHHcccccch
Q 025964 33 FILGVAAGLEVMSC 46 (245)
Q Consensus 33 ~~~~~~~~~e~~~~ 46 (245)
.++-.+++||+++.
T Consensus 16 lfffaiffreppri 29 (30)
T d2axtt1 16 LFFFAIFFREPPRI 29 (30)
T ss_dssp HHHHHHHTSCCCCC
T ss_pred HHHHHHHhcCCCCC
Confidence 33444667888763
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.39 E-value=35 Score=20.52 Aligned_cols=19 Identities=16% Similarity=-0.158 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhhcccchh
Q 025964 201 GYGIAIAGVAAYNNHKLKK 219 (245)
Q Consensus 201 G~~li~~gi~l~~~~~~~~ 219 (245)
.+.+.+.|.+.|...|.|+
T Consensus 27 iv~v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRA 45 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHhhheeeec
Confidence 3445566666776655543
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.97 E-value=1.3e+02 Score=17.87 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHhhcccc
Q 025964 199 LFGYGIAIAGVAAYNNHKL 217 (245)
Q Consensus 199 ~~G~~li~~gi~l~~~~~~ 217 (245)
..++.+++.+...|...|.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3444455556666654443
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.20 E-value=1.8e+02 Score=17.57 Aligned_cols=17 Identities=6% Similarity=-0.158 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHhhccc
Q 025964 200 FGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 200 ~G~~li~~gi~l~~~~~ 216 (245)
..+.+.+.|...|...+
T Consensus 43 ~~I~~~V~~~~~~~~~~ 59 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33444455566555443
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.11 E-value=1.2e+02 Score=15.63 Aligned_cols=22 Identities=0% Similarity=-0.197 Sum_probs=13.7
Q ss_pred chhhhhhHHHHHHHHHHhhccc
Q 025964 195 TIINLFGYGIAIAGVAAYNNHK 216 (245)
Q Consensus 195 ~~~~~~G~~li~~gi~l~~~~~ 216 (245)
-....+.+..++.++.+|...+
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~ 30 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRH 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777765443
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=1.8e+02 Score=15.58 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHcccccchhhHHHHH
Q 025964 33 FILGVAAGLEVMSCRMLLIMS 53 (245)
Q Consensus 33 ~~~~~~~~~e~~~~~~~~~~~ 53 (245)
+++.+...||..+..++++.+
T Consensus 11 vLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHHH
Confidence 456666777777777776654
Done!