BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025965
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
+DP+ E L G + + D ++A ++ ALEL DP +A LG + +
Sbjct: 30 LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 81
Query: 185 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
QG Y EAI+Y+ L++ R S EA+ + + Y + GD + A +Y K
Sbjct: 82 QGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
L++ R S EA+ + + Y + GD + A +Y K
Sbjct: 62 LELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
+DP+ E L G + + D ++A ++ ALEL DP +A LG + +
Sbjct: 64 LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 115
Query: 185 QGKYREAIKYHSMVLQISER 204
QG Y EAI+Y+ L++ R
Sbjct: 116 QGDYDEAIEYYQKALELDPR 135
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 232
+A LG + +QG Y EAI+Y+ L++ R S EA+ + + Y + GD + A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAI 55
Query: 233 RFYDK 237
+Y K
Sbjct: 56 EYYQK 60
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + + D ++A ++ ALEL N +A LG + +QG Y EAI+Y+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
L++ Y + EA+ + + Y + GD + A +Y K
Sbjct: 70 LEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226
DP +A LG + +QG Y EAI+Y+ L++ Y + EA+ + + Y + G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------YPNNAEAWYNLGNAYYKQG 57
Query: 227 DLERAARFYDK 237
D + A +Y K
Sbjct: 58 DYDEAIEYYQK 68
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 186
P E L G + + D ++A ++ ALEL N +A LG + +QG
Sbjct: 40 PNNAEAWYNL--GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQG 91
Query: 187 KYREAIKYHSMVLQISEREGE 207
Y EAI+Y+ L++ E
Sbjct: 92 DYDEAIEYYQKALELYPNNAE 112
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
L++ + EA+ + + Y + GD + A +Y K
Sbjct: 70 LELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226
DP +A LG + +QG Y EAI+Y+ L++ + EA+ + + Y + G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQG 57
Query: 227 DLERAARFYDK 237
D + A +Y K
Sbjct: 58 DYDEAIEYYQK 68
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
+DP E L G + + D ++A ++ ALEL DP +A LG + +
Sbjct: 38 LDPNNAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYK 89
Query: 185 QGKYREAIKYHSMVLQISEREGE 207
QG Y EAI+Y+ L++ E
Sbjct: 90 QGDYDEAIEYYQKALELDPNNAE 112
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G ++ + E A +K L LA+ +KD E ++ LG + Y +AI YH
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207
L+ A ++ L L + D + +A LG + G +R+A+ H L I++ G+
Sbjct: 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222
Query: 208 YSGSTEAYGAIADCYTELGDLERAARFYDK 237
+ AY + + Y LG+ E A+ +Y K
Sbjct: 223 KAAERRAYSNLGNAYIFLGEFETASEYYKK 252
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + QD EKA L +AQ + D I E +A LG + G + +A+ +
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELG 226
L+IS G+ SG A ++D LG
Sbjct: 334 LEISREVGDKSGELTARLNLSDLQMVLG 361
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%)
Query: 159 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218
L +A+ D E++A LG + G++ A +Y+ L ++ + + + ++ ++
Sbjct: 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273
Query: 219 ADCYTELGDLERAARFYDKYIS 240
+ YT L D E+A ++ K+++
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLA 295
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 187
K E ++ G ++ + E A +K L LA+ +KD E ++ LG +
Sbjct: 45 KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104
Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 245
Y +AI YH L I++ + G A ++ + YT LG+ ++A F +K+ ISR D
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 230
+ +A LG + G +R+A+ H L I++ G+ + AY + + Y LG+ E
Sbjct: 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET 67
Query: 231 AARFYDK 237
A+ +Y K
Sbjct: 68 ASEYYKK 74
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G ++ + E A +K L LA+ +KD E ++ LG + Y +AI YH
Sbjct: 232 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 291
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 292 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 332
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207
L+ A ++ L L + D + +A LG + G +R+A+ H L I++ G+
Sbjct: 161 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 220
Query: 208 YSGSTEAYGAIADCYTELGDLERAARFYDK 237
+ AY + + Y LG+ E A+ +Y K
Sbjct: 221 KAAERRAYSNLGNAYIFLGEFETASEYYKK 250
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + QD EKA L +AQ +KD I E +A LG + G + +A+ +
Sbjct: 272 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 331
Query: 199 LQISEREGE 207
L+IS G+
Sbjct: 332 LEISREVGD 340
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G ++ + E A +K L LA+ +KD E ++ LG + Y +AI YH
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207
L+ A ++ L L + D + +A LG + G +R+A+ H L I++ G+
Sbjct: 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218
Query: 208 YSGSTEAYGAIADCYTELGDLERAARFYDK 237
+ AY + + Y LG+ E A+ +Y K
Sbjct: 219 KAAERRAYSNLGNAYIFLGEFETASEYYKK 248
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + QD EKA L +AQ +KD I E +A LG + G + +A+ +
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329
Query: 199 LQISEREGE 207
L+IS G+
Sbjct: 330 LEISREVGD 338
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226
DP +A LG + +QG Y EAI+Y+ L++ + EA+ + + Y + G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQG 57
Query: 227 DLERAARFYDK 237
D + A +Y K
Sbjct: 58 DYDEAIEYYQK 68
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 199 LQISEREGE 207
L++ E
Sbjct: 70 LELDPNNAE 78
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 232
+A LG + +QG Y EAI+Y+ L++ R S EA+ + + Y + GD + A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAI 57
Query: 233 RFYDK 237
+Y K
Sbjct: 58 EYYQK 62
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 199 LQISER 204
L++ R
Sbjct: 64 LELDPR 69
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226
DP +A + LG + +QG Y++AI+Y+ L++ + A+ + + Y + G
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN------NASAWYNLGNAYYKQG 57
Query: 227 DLERAARFYDK 237
D ++A +Y K
Sbjct: 58 DYQKAIEYYQK 68
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
G + + D +KA ++ ALEL DP A LG + +QG Y++AI+Y+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALEL-----DP-NNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
L++ + +A+ + Y + GD ++A Y K
Sbjct: 70 LELDPN------NAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
+DP + R G + + D +KA +++ ALEL DP KA + LG + Q+
Sbjct: 72 LDPNNAKAWYR--RGNAYYKQGDYQKAIEDYQKALEL-----DP-NNAKAKQNLGNAKQK 123
Query: 185 QG 186
QG
Sbjct: 124 QG 125
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 200
NFL + E A + F+ A +A+ K P + +G Q +Y +AI Y +
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252
Query: 201 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
+ E +AY I + +LG +++A ++ K
Sbjct: 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207
E A +K L LA + + E ++ LG + ++ AI+YH+ L I++ G+
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338
Query: 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
G A ++ + ++ +G ERA ++ ++++
Sbjct: 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 154 EFKAALE-------LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202
EF A+E +AQ + D I E +A LG + G + A+KY LQ++
Sbjct: 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 230
A + G R KY +AIKY++ L++ E YS ++ CY +GDL++
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSN-------LSACYVSVGDLKK 57
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
+ EAIKY+ +++ E + Y I+ CY GDLE+ F K
Sbjct: 37 FNEAIKYYQYAIELDPNEPVF------YSNISACYISTGDLEKVIEFTTK 80
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
+ EAIKY+ +++ E + Y I+ CY GDLE+ F K
Sbjct: 41 FNEAIKYYQYAIELDPNEPVF------YSNISACYISTGDLEKVIEFTTK 84
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
N R Q ++E+A ++ ALE+ E A L + LQ+QGK +EA+ ++ +
Sbjct: 17 NIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
+IS +AY + + E+ D++ A + Y + I
Sbjct: 71 RISPT------FADAYSNMGNTLKEMQDVQGALQCYTRAI 104
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 20/77 (25%)
Query: 22 LRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGE 81
+RS + T + V TL+L P + F L+ FVA GA V RGE
Sbjct: 446 IRSLSPTDIDVVTLLLNHPGTS--------KQF----LVSFVASSGAAV--------RGE 485
Query: 82 LQRVNEQLRQINAALRR 98
L+ +NE ++IN +LR+
Sbjct: 486 LRWINENYKEINNSLRQ 502
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY-HSM 197
G F + + ++A + A EL +++ A+ +G+Y AI +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAISTLNDA 64
Query: 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
V Q E +Y ++++ I + Y +LGDL++ +Y K ++
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 156 KAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGS 211
K ALE+ + V KD + K L Q QGKY E Y+ L+I + + +
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194
Query: 212 TEAYGAIADCYTELGDLERAARFYDKYISR 241
+ +A CY + G ++A Y + ++R
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTR 224
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 216 GAIADCYTELGDLERAARFYDK 237
G + +CYT++G+L R +F DK
Sbjct: 95 GWVLNCYTQMGELSRMTQFKDK 116
>pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
Length = 542
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 191
L+ R+ G + +DL + F + + + EL +N+ + I+ ++ LGA+ Q+Q + A
Sbjct: 104 LVERVNDGS--FQLEDLAQGFRDIEQSDELYENLFEDID--LYSKKLGATPQKQNQTVAA 159
Query: 192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 235
+ VL ++ G+ G Y I T+ G ++A FY
Sbjct: 160 VXKELAVLDVAGHAGDXLGDAYEY-LIGQFATDSG--KKAGEFY 200
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 137 KTGKNFLRNQDLEKAFTEFKAALELA-----QNVKDPIE---EKKAARGLGASLQRQGKY 188
KTG F D +KA+ E K AL A ++ P E ++K G Q+ G +
Sbjct: 310 KTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPW 369
Query: 189 REAIKYHS 196
R + Y S
Sbjct: 370 RRPVAYLS 377
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-TELGDLERAARFYDKYI 239
Y AIK++S ++++ Y G+ +CY LGD RA KYI
Sbjct: 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 137 KTGKNFLRNQDLEKAFTEFKAALELA-----QNVKDPIE---EKKAARGLGASLQRQGKY 188
KTG F D +KA+ E K AL A ++ P E ++K G Q+ G +
Sbjct: 339 KTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPW 398
Query: 189 REAIKYHS 196
R + Y S
Sbjct: 399 RRPVAYLS 406
>pdb|3VK7|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK7|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK8|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
pdb|3VK8|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
Length = 295
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----EEKKAARGLGASLQRQGKYREAIK 193
G +FL+N D++ + + K PI ++KK GLG L + YR I
Sbjct: 136 GPDFLKNDDID---------ISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKID 186
Query: 194 YHSMVLQISEREGE 207
H + ++++E E
Sbjct: 187 PHKLGSNLTDQEIE 200
>pdb|3A45|A Chain A, Crystal Structure Of Mvnei1_2
pdb|3A45|B Chain B, Crystal Structure Of Mvnei1_2
pdb|3A46|A Chain A, Crystal Structure Of Mvnei1/thf Complex
pdb|3A46|B Chain B, Crystal Structure Of Mvnei1/thf Complex
Length = 289
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----EEKKAARGLGASLQRQGKYREAIK 193
G +FL+N D++ + + K PI ++KK GLG L + YR I
Sbjct: 136 GPDFLKNDDID---------ISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKID 186
Query: 194 YHSMVLQISEREGE 207
H + ++++E E
Sbjct: 187 PHKLGSNLTDQEIE 200
>pdb|3A42|A Chain A, Crystal Structure Of Mvnei1
Length = 295
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----EEKKAARGLGASLQRQGKYREAIK 193
G +FL+N D++ + + K PI ++KK GLG L + YR I
Sbjct: 136 GPDFLKNDDID---------ISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKID 186
Query: 194 YHSMVLQISEREGE 207
H + ++++E E
Sbjct: 187 PHKLGSNLTDQEIE 200
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 20/93 (21%)
Query: 136 LKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 194
L N R Q ++E+A ++ ALE+ E A L + LQ+QGK +EA+ +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMH 361
Query: 195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGD 227
+ ++IS AD Y+ +G+
Sbjct: 362 YKEAIRISP-------------TFADAYSNMGN 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,345,922
Number of Sequences: 62578
Number of extensions: 239557
Number of successful extensions: 769
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 80
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)