Query 025965
Match_columns 245
No_of_seqs 262 out of 3615
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.5 2.5E-13 5.4E-18 118.6 12.5 127 87-241 325-451 (966)
2 COG3063 PilF Tfp pilus assembl 99.5 3.9E-13 8.4E-18 104.6 11.6 128 89-242 42-169 (250)
3 PRK15359 type III secretion sy 99.4 1.3E-12 2.8E-17 97.7 10.8 97 135-243 27-123 (144)
4 PRK10370 formate-dependent nit 99.4 9E-12 2E-16 98.0 15.8 120 97-244 54-176 (198)
5 KOG4626 O-linked N-acetylgluco 99.4 3.4E-12 7.4E-17 111.6 12.0 131 84-242 356-486 (966)
6 PRK15363 pathogenicity island 99.4 1.1E-11 2.3E-16 92.2 12.6 102 129-242 32-133 (157)
7 PF13424 TPR_12: Tetratricopep 99.4 1.5E-11 3.2E-16 81.9 10.5 73 171-243 4-77 (78)
8 KOG0553 TPR repeat-containing 99.4 7.2E-12 1.6E-16 101.2 10.5 103 128-242 77-179 (304)
9 PRK11189 lipoprotein NlpI; Pro 99.3 2.7E-11 5.7E-16 101.3 14.1 102 130-243 62-163 (296)
10 PF14938 SNAP: Soluble NSF att 99.3 2.9E-10 6.2E-15 94.5 17.7 147 84-241 37-184 (282)
11 TIGR02552 LcrH_SycD type III s 99.3 4.6E-11 1E-15 88.0 11.5 100 132-243 17-116 (135)
12 TIGR02521 type_IV_pilW type IV 99.3 1.4E-10 3.1E-15 92.0 14.2 98 134-241 101-198 (234)
13 KOG1130 Predicted G-alpha GTPa 99.3 1.3E-11 2.8E-16 103.5 7.8 110 133-242 196-305 (639)
14 KOG0553 TPR repeat-containing 99.3 1.5E-10 3.3E-15 93.5 12.8 124 78-229 77-200 (304)
15 KOG1130 Predicted G-alpha GTPa 99.2 9.8E-11 2.1E-15 98.3 11.7 117 126-242 229-345 (639)
16 KOG1840 Kinesin light chain [C 99.2 7.9E-10 1.7E-14 97.5 17.8 140 96-243 255-398 (508)
17 PF13424 TPR_12: Tetratricopep 99.2 2.6E-10 5.6E-15 75.9 11.5 74 130-203 3-77 (78)
18 CHL00033 ycf3 photosystem I as 99.2 5E-10 1.1E-14 85.9 14.7 109 126-243 29-144 (168)
19 TIGR00990 3a0801s09 mitochondr 99.2 3.8E-10 8.1E-15 103.6 14.7 98 133-242 400-497 (615)
20 PRK02603 photosystem I assembl 99.2 1.1E-09 2.5E-14 84.2 14.4 108 126-242 29-143 (172)
21 TIGR00990 3a0801s09 mitochondr 99.2 4.1E-10 8.8E-15 103.4 13.9 131 85-243 334-464 (615)
22 PLN03088 SGT1, suppressor of 99.2 3.4E-10 7.4E-15 96.9 12.1 97 135-243 5-101 (356)
23 KOG1155 Anaphase-promoting com 99.2 6.1E-10 1.3E-14 94.7 13.1 117 97-241 345-461 (559)
24 PF12895 Apc3: Anaphase-promot 99.2 3.9E-10 8.5E-15 76.2 9.8 84 144-238 1-84 (84)
25 PF14938 SNAP: Soluble NSF att 99.1 1.9E-09 4.2E-14 89.5 14.5 113 131-244 34-147 (282)
26 PF13414 TPR_11: TPR repeat; P 99.1 5.8E-10 1.2E-14 72.3 8.8 64 172-241 3-67 (69)
27 KOG1155 Anaphase-promoting com 99.1 7.9E-10 1.7E-14 94.0 11.8 118 97-242 379-496 (559)
28 TIGR02795 tol_pal_ybgF tol-pal 99.1 2E-09 4.3E-14 77.0 11.7 105 134-244 4-108 (119)
29 COG3063 PilF Tfp pilus assembl 99.1 1.5E-09 3.2E-14 84.8 11.6 103 127-241 30-132 (250)
30 PF09976 TPR_21: Tetratricopep 99.1 1.9E-08 4.1E-13 75.2 17.2 100 130-239 46-145 (145)
31 cd00189 TPR Tetratricopeptide 99.1 9.5E-10 2.1E-14 74.1 9.0 97 134-242 2-98 (100)
32 KOG1126 DNA-binding cell divis 99.1 2.3E-10 5E-15 100.8 6.8 122 91-240 430-551 (638)
33 TIGR02521 type_IV_pilW type IV 99.1 2.4E-09 5.2E-14 84.9 12.2 102 132-243 65-166 (234)
34 TIGR03302 OM_YfiO outer membra 99.1 1.1E-08 2.3E-13 82.6 15.6 141 84-243 35-197 (235)
35 PRK09782 bacteriophage N4 rece 99.1 2.1E-09 4.6E-14 102.3 13.0 99 133-243 610-708 (987)
36 KOG1125 TPR repeat-containing 99.1 2.7E-10 5.9E-15 99.0 6.1 100 132-243 430-529 (579)
37 PRK11189 lipoprotein NlpI; Pro 99.0 2.1E-08 4.6E-13 83.9 17.3 128 85-241 67-194 (296)
38 KOG1173 Anaphase-promoting com 99.0 1.8E-09 3.9E-14 93.8 10.8 104 134-243 416-520 (611)
39 KOG1941 Acetylcholine receptor 99.0 5.7E-09 1.2E-13 86.6 12.3 136 97-242 137-276 (518)
40 PF13414 TPR_11: TPR repeat; P 99.0 2E-09 4.4E-14 69.7 7.9 64 132-201 3-67 (69)
41 PRK12370 invasion protein regu 99.0 5E-09 1.1E-13 95.0 13.0 97 133-241 339-435 (553)
42 KOG1840 Kinesin light chain [C 99.0 5.1E-08 1.1E-12 86.2 18.2 138 97-242 340-480 (508)
43 PRK10803 tol-pal system protei 99.0 1.2E-08 2.7E-13 83.4 13.5 105 133-243 143-248 (263)
44 PRK12370 invasion protein regu 99.0 5.1E-09 1.1E-13 94.9 12.0 118 98-243 277-403 (553)
45 PRK15359 type III secretion sy 99.0 5.1E-09 1.1E-13 78.2 9.9 109 89-225 31-139 (144)
46 PRK15174 Vi polysaccharide exp 98.9 1.6E-08 3.5E-13 93.4 12.8 93 135-239 249-345 (656)
47 KOG0547 Translocase of outer m 98.9 1.5E-08 3.3E-13 86.9 11.0 119 97-243 375-493 (606)
48 PRK11788 tetratricopeptide rep 98.9 1.4E-07 3E-12 81.6 17.0 94 135-240 183-277 (389)
49 TIGR03302 OM_YfiO outer membra 98.9 3.1E-07 6.6E-12 74.1 17.7 137 90-242 78-233 (235)
50 PRK15174 Vi polysaccharide exp 98.9 3.4E-08 7.4E-13 91.3 13.4 100 132-243 284-383 (656)
51 PRK11447 cellulose synthase su 98.9 3.8E-08 8.2E-13 96.5 14.2 124 97-242 284-415 (1157)
52 KOG0550 Molecular chaperone (D 98.9 1.2E-08 2.7E-13 85.8 9.1 138 93-242 214-351 (486)
53 KOG0543 FKBP-type peptidyl-pro 98.9 2.9E-08 6.3E-13 83.6 11.3 106 132-243 208-322 (397)
54 PRK15179 Vi polysaccharide bio 98.9 4.5E-08 9.9E-13 90.1 13.5 100 132-243 120-219 (694)
55 PRK15331 chaperone protein Sic 98.9 2.8E-08 6E-13 74.4 9.9 105 126-242 31-135 (165)
56 KOG1126 DNA-binding cell divis 98.9 9.3E-09 2E-13 90.9 8.5 102 129-242 486-587 (638)
57 COG5010 TadD Flp pilus assembl 98.9 1.3E-07 2.9E-12 75.3 14.2 93 137-241 105-197 (257)
58 PF13432 TPR_16: Tetratricopep 98.9 1.3E-08 2.9E-13 65.0 7.1 63 176-244 1-63 (65)
59 PRK11788 tetratricopeptide rep 98.8 1.6E-07 3.5E-12 81.2 15.6 105 131-242 106-210 (389)
60 PLN03088 SGT1, suppressor of 98.8 4.6E-08 9.9E-13 83.9 11.5 113 85-225 5-117 (356)
61 PF13432 TPR_16: Tetratricopep 98.8 2.1E-08 4.6E-13 64.1 6.4 59 137-201 2-60 (65)
62 PRK09782 bacteriophage N4 rece 98.8 1.4E-07 3E-12 90.2 14.5 93 138-243 582-674 (987)
63 PRK11447 cellulose synthase su 98.8 1E-07 2.2E-12 93.6 13.8 104 133-242 386-525 (1157)
64 PRK15179 Vi polysaccharide bio 98.8 1.6E-07 3.5E-12 86.6 13.7 97 132-240 86-182 (694)
65 TIGR02917 PEP_TPR_lipo putativ 98.8 1.6E-07 3.5E-12 88.6 14.0 62 172-239 125-186 (899)
66 COG1729 Uncharacterized protei 98.7 1.1E-07 2.5E-12 76.5 10.4 103 135-243 144-246 (262)
67 PF12688 TPR_5: Tetratrico pep 98.7 9.2E-07 2E-11 63.6 13.9 100 134-239 3-102 (120)
68 TIGR02917 PEP_TPR_lipo putativ 98.7 1.8E-07 3.9E-12 88.4 13.3 96 133-241 771-866 (899)
69 KOG4234 TPR repeat-containing 98.7 2.8E-07 6.1E-12 70.8 11.7 105 131-242 94-198 (271)
70 KOG0548 Molecular co-chaperone 98.7 1.6E-07 3.6E-12 81.4 10.9 99 132-242 358-456 (539)
71 KOG0547 Translocase of outer m 98.7 9.4E-08 2E-12 82.1 9.2 95 129-235 112-206 (606)
72 COG4235 Cytochrome c biogenesi 98.7 2.6E-07 5.6E-12 75.3 11.3 102 131-244 155-259 (287)
73 KOG4555 TPR repeat-containing 98.7 1.2E-06 2.6E-11 62.9 12.8 98 136-241 47-144 (175)
74 KOG0543 FKBP-type peptidyl-pro 98.7 4.4E-07 9.6E-12 76.6 12.3 150 80-242 206-356 (397)
75 KOG1173 Anaphase-promoting com 98.7 1.5E-07 3.3E-12 82.0 9.3 127 96-244 360-487 (611)
76 PF13429 TPR_15: Tetratricopep 98.6 1.1E-07 2.4E-12 78.8 8.2 98 131-240 145-242 (280)
77 COG5010 TadD Flp pilus assembl 98.6 6.8E-07 1.5E-11 71.3 11.7 120 88-235 106-225 (257)
78 PRK10049 pgaA outer membrane p 98.6 1.3E-06 2.7E-11 82.4 15.4 105 128-244 355-459 (765)
79 cd05804 StaR_like StaR_like; a 98.6 3.2E-07 6.9E-12 78.4 10.5 103 130-240 112-214 (355)
80 PF13429 TPR_15: Tetratricopep 98.6 1.9E-07 4.2E-12 77.4 8.6 118 97-242 161-278 (280)
81 KOG4234 TPR repeat-containing 98.6 1.6E-06 3.5E-11 66.7 12.5 129 78-229 91-219 (271)
82 PRK15363 pathogenicity island 98.6 1.2E-06 2.5E-11 65.5 11.0 103 79-203 32-134 (157)
83 PLN02789 farnesyltranstransfer 98.6 2.3E-06 5E-11 72.1 14.1 98 132-241 71-171 (320)
84 PRK10866 outer membrane biogen 98.6 4.6E-06 1E-10 67.7 15.0 144 84-243 34-206 (243)
85 KOG1941 Acetylcholine receptor 98.6 2.5E-06 5.4E-11 71.2 13.4 110 133-242 123-236 (518)
86 PRK10049 pgaA outer membrane p 98.5 1.1E-06 2.5E-11 82.7 12.8 97 134-243 51-147 (765)
87 PF13525 YfiO: Outer membrane 98.5 2.4E-06 5.2E-11 67.5 12.7 107 132-244 5-122 (203)
88 KOG2003 TPR repeat-containing 98.5 1.8E-07 3.9E-12 79.9 6.5 105 128-244 486-590 (840)
89 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.8E-07 1E-11 78.0 9.0 65 131-201 74-141 (453)
90 PRK10866 outer membrane biogen 98.5 3.6E-06 7.8E-11 68.3 13.3 105 134-244 34-156 (243)
91 PF13512 TPR_18: Tetratricopep 98.5 5.6E-06 1.2E-10 60.8 12.7 106 133-244 11-131 (142)
92 PRK10370 formate-dependent nit 98.5 1E-06 2.2E-11 69.3 9.4 87 145-243 52-141 (198)
93 TIGR02552 LcrH_SycD type III s 98.5 7.3E-07 1.6E-11 65.4 8.1 79 153-243 4-82 (135)
94 PRK14720 transcript cleavage f 98.5 1.5E-06 3.3E-11 81.4 11.5 102 132-242 65-179 (906)
95 KOG2002 TPR-containing nuclear 98.4 1E-06 2.2E-11 81.2 9.3 103 131-243 645-747 (1018)
96 PRK02603 photosystem I assembl 98.4 6.2E-06 1.3E-10 63.3 12.4 75 165-242 28-102 (172)
97 TIGR00540 hemY_coli hemY prote 98.4 1.9E-05 4.1E-10 69.2 16.9 97 134-241 120-216 (409)
98 KOG1129 TPR repeat-containing 98.4 7E-07 1.5E-11 73.5 7.1 66 172-240 358-423 (478)
99 CHL00033 ycf3 photosystem I as 98.4 1.2E-05 2.5E-10 61.6 13.7 103 84-205 37-146 (168)
100 COG2956 Predicted N-acetylgluc 98.4 2.2E-05 4.7E-10 64.8 15.4 103 129-242 177-279 (389)
101 PRK04841 transcriptional regul 98.4 1.7E-05 3.7E-10 76.2 17.5 113 131-243 490-604 (903)
102 KOG1586 Protein required for f 98.4 3E-05 6.4E-10 61.2 15.4 147 83-240 34-182 (288)
103 PF13371 TPR_9: Tetratricopept 98.4 1.8E-06 3.9E-11 56.3 7.5 57 139-201 2-58 (73)
104 COG2976 Uncharacterized protei 98.4 0.00011 2.3E-09 56.6 17.8 102 131-242 88-189 (207)
105 PF14559 TPR_19: Tetratricopep 98.4 9.3E-07 2E-11 56.8 5.8 65 143-219 2-66 (68)
106 PF13371 TPR_9: Tetratricopept 98.4 1.5E-06 3.3E-11 56.6 6.9 60 179-244 2-61 (73)
107 KOG0624 dsRNA-activated protei 98.4 2.8E-06 6.1E-11 70.5 9.7 102 128-241 34-135 (504)
108 COG4700 Uncharacterized protei 98.4 7.4E-06 1.6E-10 62.5 11.2 163 55-243 28-191 (251)
109 KOG0548 Molecular co-chaperone 98.4 1.2E-06 2.6E-11 76.1 7.8 94 137-242 7-100 (539)
110 PF13525 YfiO: Outer membrane 98.4 2.3E-05 5.1E-10 61.9 14.7 145 83-243 6-172 (203)
111 PF12895 Apc3: Anaphase-promot 98.4 2.7E-06 5.9E-11 57.2 8.1 60 132-198 25-84 (84)
112 PF12968 DUF3856: Domain of Un 98.4 8.6E-05 1.9E-09 52.4 15.1 111 134-244 11-132 (144)
113 KOG4648 Uncharacterized conser 98.4 1.1E-06 2.4E-11 72.8 6.5 94 136-241 101-194 (536)
114 KOG2002 TPR-containing nuclear 98.3 5E-06 1.1E-10 76.9 11.2 104 128-242 303-410 (1018)
115 PRK10747 putative protoheme IX 98.3 5.7E-05 1.2E-09 65.9 16.9 94 135-240 121-215 (398)
116 COG2956 Predicted N-acetylgluc 98.3 3.5E-05 7.6E-10 63.6 13.8 67 169-241 177-243 (389)
117 KOG1129 TPR repeat-containing 98.3 3.4E-06 7.3E-11 69.6 7.7 100 134-242 360-459 (478)
118 PF14559 TPR_19: Tetratricopep 98.3 1.4E-06 3E-11 55.9 4.5 55 183-243 2-56 (68)
119 KOG1585 Protein required for f 98.3 9.4E-05 2E-09 58.8 15.2 119 126-245 25-143 (308)
120 cd05804 StaR_like StaR_like; a 98.3 1.3E-05 2.7E-10 68.6 11.5 96 139-242 83-178 (355)
121 KOG4162 Predicted calmodulin-b 98.3 6.6E-06 1.4E-10 74.4 9.8 100 132-243 684-785 (799)
122 KOG2003 TPR repeat-containing 98.3 2.1E-05 4.5E-10 67.7 12.1 128 89-244 564-692 (840)
123 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.5E-09 54.6 15.1 100 132-237 11-110 (145)
124 TIGR02795 tol_pal_ybgF tol-pal 98.2 1E-05 2.2E-10 57.5 9.0 96 90-201 10-105 (119)
125 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 2.7E-06 5.9E-11 73.4 6.8 68 171-241 74-141 (453)
126 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.7E-05 1E-09 65.8 14.3 91 134-236 202-292 (395)
127 PLN02789 farnesyltranstransfer 98.2 6.4E-05 1.4E-09 63.5 14.6 100 132-243 106-214 (320)
128 PRK14574 hmsH outer membrane p 98.2 2.1E-05 4.5E-10 74.1 12.7 100 131-243 101-200 (822)
129 KOG2076 RNA polymerase III tra 98.2 1.8E-05 3.9E-10 72.7 11.7 101 131-243 138-238 (895)
130 COG4783 Putative Zn-dependent 98.2 2.8E-05 6.2E-10 67.2 12.3 96 132-239 340-435 (484)
131 KOG2076 RNA polymerase III tra 98.2 3.5E-05 7.6E-10 70.9 13.5 135 81-243 138-272 (895)
132 KOG0624 dsRNA-activated protei 98.2 0.00015 3.3E-09 60.4 15.8 158 78-241 34-218 (504)
133 KOG1125 TPR repeat-containing 98.2 8.2E-06 1.8E-10 71.6 8.8 115 97-233 445-563 (579)
134 KOG0551 Hsp90 co-chaperone CNS 98.2 1.9E-05 4.2E-10 65.2 10.3 109 126-242 75-183 (390)
135 PRK04841 transcriptional regul 98.2 0.00013 2.7E-09 70.2 17.6 116 126-242 525-642 (903)
136 KOG1586 Protein required for f 98.2 7.6E-05 1.6E-09 59.0 12.9 112 132-244 34-146 (288)
137 TIGR00540 hemY_coli hemY prote 98.2 3E-05 6.4E-10 67.9 12.0 91 139-242 306-400 (409)
138 PF12862 Apc5: Anaphase-promot 98.2 6E-05 1.3E-09 51.9 11.2 81 142-222 8-91 (94)
139 cd00189 TPR Tetratricopeptide 98.1 1.2E-05 2.5E-10 53.6 7.0 64 174-243 2-65 (100)
140 PRK10747 putative protoheme IX 98.1 5.8E-05 1.3E-09 65.9 12.9 86 144-242 306-391 (398)
141 PRK10803 tol-pal system protei 98.1 5.7E-05 1.2E-09 62.0 11.9 90 96-201 157-246 (263)
142 PRK10153 DNA-binding transcrip 98.1 6.4E-05 1.4E-09 67.5 12.5 64 172-242 420-483 (517)
143 KOG4555 TPR repeat-containing 98.1 0.00025 5.4E-09 51.2 12.5 100 84-201 45-144 (175)
144 KOG4642 Chaperone-dependent E3 98.0 1.7E-05 3.8E-10 62.7 7.0 97 135-243 13-109 (284)
145 COG4785 NlpI Lipoprotein NlpI, 98.0 1.3E-05 2.8E-10 62.6 5.7 100 129-240 62-161 (297)
146 KOG3060 Uncharacterized conser 98.0 0.00034 7.5E-09 56.0 13.3 92 140-243 128-222 (289)
147 PF12688 TPR_5: Tetratrico pep 98.0 7E-05 1.5E-09 53.8 8.6 68 173-243 2-69 (120)
148 COG4783 Putative Zn-dependent 97.9 0.00011 2.3E-09 63.7 10.4 101 131-243 305-405 (484)
149 PF09986 DUF2225: Uncharacteri 97.9 0.00044 9.5E-09 55.0 13.2 97 145-241 90-194 (214)
150 KOG1128 Uncharacterized conser 97.9 3.2E-05 6.9E-10 69.8 7.2 96 134-241 487-582 (777)
151 KOG0550 Molecular chaperone (D 97.9 0.00024 5.3E-09 60.4 11.7 105 81-203 248-352 (486)
152 PF12569 NARP1: NMDA receptor- 97.9 0.00075 1.6E-08 60.5 15.1 100 126-237 188-287 (517)
153 PF13431 TPR_17: Tetratricopep 97.8 2E-05 4.4E-10 43.3 3.0 33 195-233 2-34 (34)
154 PF06552 TOM20_plant: Plant sp 97.8 0.00022 4.7E-09 54.3 9.3 84 148-243 7-104 (186)
155 PRK11906 transcriptional regul 97.8 0.00039 8.5E-09 60.4 11.9 83 147-241 319-401 (458)
156 PF03704 BTAD: Bacterial trans 97.8 0.001 2.2E-08 49.5 12.5 103 135-243 9-127 (146)
157 PF13176 TPR_7: Tetratricopept 97.8 9.2E-05 2E-09 41.2 5.1 29 175-203 2-30 (36)
158 PRK14574 hmsH outer membrane p 97.8 0.0008 1.7E-08 63.7 14.2 106 127-244 411-516 (822)
159 PF00515 TPR_1: Tetratricopept 97.7 6.5E-05 1.4E-09 41.0 4.2 28 174-201 3-30 (34)
160 PF00515 TPR_1: Tetratricopept 97.7 0.00013 2.8E-09 39.8 5.1 33 212-244 1-33 (34)
161 PF13176 TPR_7: Tetratricopept 97.7 0.0001 2.2E-09 41.0 4.7 30 214-243 1-30 (36)
162 KOG3060 Uncharacterized conser 97.7 0.00048 1E-08 55.2 10.0 92 137-240 91-182 (289)
163 COG4105 ComL DNA uptake lipopr 97.7 0.0048 1E-07 49.7 15.6 145 83-243 35-198 (254)
164 PF07719 TPR_2: Tetratricopept 97.7 0.00013 2.8E-09 39.7 4.9 29 214-242 3-31 (34)
165 COG1729 Uncharacterized protei 97.7 0.00057 1.2E-08 55.4 10.4 101 85-201 144-244 (262)
166 PRK14720 transcript cleavage f 97.7 0.00055 1.2E-08 64.7 11.4 104 133-243 117-254 (906)
167 PF13428 TPR_14: Tetratricopep 97.7 0.00012 2.5E-09 42.7 4.6 42 173-220 2-43 (44)
168 KOG1127 TPR repeat-containing 97.6 0.0002 4.3E-09 66.9 7.8 99 133-243 563-661 (1238)
169 PF10602 RPN7: 26S proteasome 97.6 0.0059 1.3E-07 47.1 14.8 105 133-240 37-141 (177)
170 KOG1174 Anaphase-promoting com 97.6 0.0005 1.1E-08 58.7 9.1 65 131-201 333-397 (564)
171 KOG4642 Chaperone-dependent E3 97.6 0.00028 6E-09 56.0 7.1 102 83-206 11-112 (284)
172 KOG0545 Aryl-hydrocarbon recep 97.6 0.0013 2.9E-08 52.5 10.8 104 132-241 178-293 (329)
173 PF13512 TPR_18: Tetratricopep 97.6 0.0015 3.2E-08 48.1 10.2 103 84-202 12-129 (142)
174 PF12862 Apc5: Anaphase-promot 97.5 0.0013 2.7E-08 45.2 9.0 64 181-244 7-73 (94)
175 PRK10153 DNA-binding transcrip 97.5 0.0012 2.7E-08 59.4 11.3 110 127-242 334-450 (517)
176 PF07719 TPR_2: Tetratricopept 97.5 0.00035 7.6E-09 37.9 4.9 29 173-201 2-30 (34)
177 KOG1128 Uncharacterized conser 97.5 0.00032 7E-09 63.5 7.1 100 131-242 518-617 (777)
178 PF13431 TPR_17: Tetratricopep 97.5 0.0001 2.2E-09 40.5 2.2 32 155-192 2-33 (34)
179 KOG1156 N-terminal acetyltrans 97.5 0.0012 2.7E-08 59.1 10.1 97 134-242 77-173 (700)
180 PF13181 TPR_8: Tetratricopept 97.4 0.00049 1.1E-08 37.4 5.0 31 213-243 2-32 (34)
181 KOG4648 Uncharacterized conser 97.4 0.0019 4.2E-08 54.0 10.5 96 84-201 99-194 (536)
182 PF09986 DUF2225: Uncharacteri 97.4 0.0026 5.6E-08 50.6 10.9 96 97-201 92-194 (214)
183 KOG1156 N-terminal acetyltrans 97.4 0.0013 2.7E-08 59.1 9.6 96 134-241 43-138 (700)
184 PF12569 NARP1: NMDA receptor- 97.4 0.004 8.6E-08 56.0 12.8 121 97-243 209-336 (517)
185 KOG1585 Protein required for f 97.4 0.011 2.3E-07 47.4 13.5 108 133-240 111-218 (308)
186 PRK15331 chaperone protein Sic 97.4 0.0016 3.5E-08 49.0 8.6 67 170-242 35-101 (165)
187 PF10300 DUF3808: Protein of u 97.4 0.0053 1.2E-07 54.7 13.4 104 132-242 267-377 (468)
188 KOG2376 Signal recognition par 97.4 0.0065 1.4E-07 54.2 13.4 109 135-243 113-255 (652)
189 KOG3785 Uncharacterized conser 97.3 0.0086 1.9E-07 50.5 13.3 30 130-159 55-84 (557)
190 KOG1127 TPR repeat-containing 97.3 0.0015 3.2E-08 61.3 9.6 97 136-244 6-106 (1238)
191 COG4105 ComL DNA uptake lipopr 97.3 0.0079 1.7E-07 48.5 12.2 106 132-243 34-147 (254)
192 PF04733 Coatomer_E: Coatomer 97.3 0.0029 6.4E-08 52.8 10.0 96 132-239 165-263 (290)
193 KOG4340 Uncharacterized conser 97.3 0.0043 9.2E-08 51.1 10.4 64 173-242 145-208 (459)
194 KOG0376 Serine-threonine phosp 97.3 0.0002 4.4E-09 62.0 2.9 96 137-244 9-104 (476)
195 KOG1174 Anaphase-promoting com 97.2 0.0025 5.3E-08 54.6 9.0 97 135-243 303-399 (564)
196 KOG2376 Signal recognition par 97.1 0.0084 1.8E-07 53.5 11.5 99 136-243 83-206 (652)
197 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.5E-08 38.5 4.2 41 134-180 3-43 (44)
198 PF13174 TPR_6: Tetratricopept 97.1 0.0011 2.3E-08 35.6 3.8 30 214-243 2-31 (33)
199 PF13181 TPR_8: Tetratricopept 97.1 0.0018 3.8E-08 35.1 4.6 30 134-163 3-32 (34)
200 COG0457 NrfG FOG: TPR repeat [ 97.1 0.054 1.2E-06 41.4 14.8 94 141-243 139-233 (291)
201 PF13374 TPR_10: Tetratricopep 97.0 0.0026 5.7E-08 36.0 4.9 28 214-241 4-31 (42)
202 COG4785 NlpI Lipoprotein NlpI, 96.9 0.065 1.4E-06 42.4 13.5 134 85-240 68-265 (297)
203 PF11817 Foie-gras_1: Foie gra 96.9 0.032 6.8E-07 45.5 12.6 91 147-237 153-243 (247)
204 PRK11906 transcriptional regul 96.9 0.013 2.9E-07 51.1 10.7 94 131-237 337-432 (458)
205 PF13374 TPR_10: Tetratricopep 96.9 0.0036 7.8E-08 35.4 5.0 34 172-205 2-35 (42)
206 KOG0545 Aryl-hydrocarbon recep 96.9 0.0082 1.8E-07 48.1 8.4 132 71-214 167-300 (329)
207 PF06552 TOM20_plant: Plant sp 96.8 0.012 2.7E-07 44.9 8.8 61 147-213 50-115 (186)
208 COG3071 HemY Uncharacterized e 96.8 0.16 3.5E-06 43.4 16.2 97 131-238 117-213 (400)
209 KOG1308 Hsp70-interacting prot 96.8 0.00036 7.8E-09 58.1 0.3 95 135-241 117-211 (377)
210 KOG3785 Uncharacterized conser 96.8 0.0036 7.9E-08 52.7 6.1 86 142-238 32-117 (557)
211 KOG0551 Hsp90 co-chaperone CNS 96.8 0.019 4.2E-07 47.9 10.1 103 83-203 82-184 (390)
212 KOG2796 Uncharacterized conser 96.7 0.01 2.2E-07 48.1 8.1 104 133-242 213-316 (366)
213 PF10579 Rapsyn_N: Rapsyn N-te 96.6 0.064 1.4E-06 35.1 9.9 73 132-207 6-78 (80)
214 PF03704 BTAD: Bacterial trans 96.6 0.035 7.7E-07 41.0 10.1 107 97-210 21-135 (146)
215 PF08631 SPO22: Meiosis protei 96.6 0.082 1.8E-06 43.8 13.2 90 143-233 4-105 (278)
216 COG3071 HemY Uncharacterized e 96.6 0.016 3.4E-07 49.4 8.6 100 137-243 268-392 (400)
217 PF10602 RPN7: 26S proteasome 96.6 0.099 2.1E-06 40.3 12.5 90 151-243 15-104 (177)
218 KOG3617 WD40 and TPR repeat-co 96.5 0.13 2.7E-06 48.3 14.4 104 133-240 859-995 (1416)
219 KOG0495 HAT repeat protein [RN 96.4 0.027 5.8E-07 51.1 9.5 89 141-242 627-715 (913)
220 KOG2471 TPR repeat-containing 96.4 0.0078 1.7E-07 52.7 6.0 110 134-244 242-367 (696)
221 PF04733 Coatomer_E: Coatomer 96.4 0.0073 1.6E-07 50.4 5.6 94 136-241 135-230 (290)
222 PF12968 DUF3856: Domain of Un 96.4 0.22 4.7E-06 35.6 13.8 105 96-204 23-132 (144)
223 PF09295 ChAPs: ChAPs (Chs5p-A 96.3 0.074 1.6E-06 46.3 11.5 91 139-244 176-266 (395)
224 PF04184 ST7: ST7 protein; In 96.3 0.043 9.4E-07 48.3 10.0 88 148-239 216-322 (539)
225 PF13174 TPR_6: Tetratricopept 96.3 0.0098 2.1E-07 31.7 4.0 29 173-201 1-29 (33)
226 PF10345 Cohesin_load: Cohesin 96.3 0.27 5.7E-06 45.6 15.6 115 127-243 54-170 (608)
227 smart00028 TPR Tetratricopepti 96.2 0.0067 1.5E-07 31.3 3.2 28 214-241 3-30 (34)
228 PLN03218 maturation of RBCL 1; 96.2 0.076 1.6E-06 52.1 12.1 59 175-238 652-710 (1060)
229 COG0457 NrfG FOG: TPR repeat [ 96.2 0.13 2.8E-06 39.2 11.4 98 134-243 97-198 (291)
230 KOG4340 Uncharacterized conser 96.1 0.042 9.1E-07 45.5 8.3 100 130-235 142-264 (459)
231 PLN03218 maturation of RBCL 1; 96.0 0.1 2.2E-06 51.2 12.0 98 134-239 544-641 (1060)
232 KOG2471 TPR repeat-containing 95.9 0.016 3.5E-07 50.8 5.4 120 99-224 250-381 (696)
233 KOG4814 Uncharacterized conser 95.9 0.11 2.3E-06 47.2 10.5 100 137-242 359-458 (872)
234 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.06 1.3E-06 32.6 6.4 39 173-217 2-40 (53)
235 COG4700 Uncharacterized protei 95.9 0.37 8.1E-06 37.4 12.0 121 96-242 103-223 (251)
236 PLN03081 pentatricopeptide (PP 95.8 0.064 1.4E-06 50.4 9.6 26 134-159 292-317 (697)
237 KOG0376 Serine-threonine phosp 95.8 0.0095 2.1E-07 51.9 3.6 107 87-221 9-115 (476)
238 KOG4162 Predicted calmodulin-b 95.8 0.11 2.4E-06 48.0 10.2 98 132-241 650-749 (799)
239 KOG2796 Uncharacterized conser 95.7 0.16 3.4E-06 41.4 9.9 103 134-241 179-281 (366)
240 KOG3824 Huntingtin interacting 95.7 0.024 5.1E-07 47.1 5.3 81 129-221 113-193 (472)
241 KOG0495 HAT repeat protein [RN 95.7 0.17 3.8E-06 46.2 10.9 94 134-239 653-746 (913)
242 PF10300 DUF3808: Protein of u 95.6 0.083 1.8E-06 47.2 9.1 88 145-240 246-333 (468)
243 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.24 5.2E-06 32.5 8.8 66 175-243 9-74 (80)
244 PLN03081 pentatricopeptide (PP 95.6 0.038 8.3E-07 51.9 7.3 60 175-240 497-556 (697)
245 PF04781 DUF627: Protein of un 95.6 0.23 5E-06 34.9 9.2 97 138-243 2-109 (111)
246 KOG2300 Uncharacterized conser 95.6 0.35 7.5E-06 42.7 12.0 108 129-236 442-551 (629)
247 PF10516 SHNi-TPR: SHNi-TPR; 95.5 0.04 8.7E-07 30.8 4.2 32 173-204 2-33 (38)
248 PRK13184 pknD serine/threonine 95.4 0.078 1.7E-06 51.0 8.4 104 137-243 480-583 (932)
249 KOG3617 WD40 and TPR repeat-co 95.4 0.22 4.8E-06 46.7 10.7 91 151-242 838-942 (1416)
250 COG4235 Cytochrome c biogenesi 95.4 0.13 2.8E-06 42.5 8.4 65 171-241 155-222 (287)
251 PRK10941 hypothetical protein; 95.2 0.21 4.5E-06 41.2 9.3 73 166-244 175-247 (269)
252 COG2976 Uncharacterized protei 95.2 0.5 1.1E-05 36.8 10.6 69 126-201 120-188 (207)
253 PLN03077 Protein ECB2; Provisi 95.1 0.17 3.7E-06 48.7 10.1 97 133-238 555-651 (857)
254 KOG2053 Mitochondrial inherita 95.1 0.09 2E-06 49.3 7.6 88 144-243 21-108 (932)
255 smart00028 TPR Tetratricopepti 95.1 0.042 9.1E-07 28.0 3.6 29 173-201 2-30 (34)
256 KOG3081 Vesicle coat complex C 95.0 0.97 2.1E-05 37.0 12.3 88 136-235 175-264 (299)
257 KOG1915 Cell cycle control pro 94.8 1.1 2.4E-05 39.6 12.9 88 139-239 411-498 (677)
258 KOG2610 Uncharacterized conser 94.8 1.2 2.5E-05 37.9 12.5 94 138-239 181-274 (491)
259 KOG3616 Selective LIM binding 94.7 0.34 7.4E-06 45.0 9.9 101 137-238 666-791 (1636)
260 KOG0687 26S proteasome regulat 94.7 2.2 4.7E-05 36.0 13.7 110 131-243 103-212 (393)
261 PF05843 Suf: Suppressor of fo 94.5 0.13 2.7E-06 42.8 6.5 100 134-242 37-137 (280)
262 PF15015 NYD-SP12_N: Spermatog 94.5 0.78 1.7E-05 39.9 11.1 103 130-238 174-288 (569)
263 KOG4814 Uncharacterized conser 94.5 0.13 2.7E-06 46.8 6.6 69 173-241 355-423 (872)
264 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.095 2.1E-06 29.3 3.8 31 213-243 2-32 (38)
265 PF11817 Foie-gras_1: Foie gra 94.4 0.97 2.1E-05 36.8 11.3 71 128-198 174-244 (247)
266 COG3118 Thioredoxin domain-con 94.3 1.4 3E-05 36.6 11.7 101 135-241 137-265 (304)
267 KOG1550 Extracellular protein 94.3 0.33 7.1E-06 44.4 9.1 100 132-240 244-356 (552)
268 KOG2300 Uncharacterized conser 94.2 0.69 1.5E-05 40.9 10.3 110 129-242 401-515 (629)
269 PF05843 Suf: Suppressor of fo 94.2 1.1 2.4E-05 37.2 11.5 93 138-242 7-100 (280)
270 PF14853 Fis1_TPR_C: Fis1 C-te 94.2 0.15 3.4E-06 30.8 4.7 30 213-242 2-31 (53)
271 COG2909 MalT ATP-dependent tra 94.2 4.5 9.8E-05 38.5 16.0 91 137-228 463-553 (894)
272 PLN03077 Protein ECB2; Provisi 94.1 0.39 8.4E-06 46.3 9.8 91 140-240 597-719 (857)
273 KOG4507 Uncharacterized conser 94.0 0.092 2E-06 47.3 4.7 93 139-242 614-706 (886)
274 KOG2610 Uncharacterized conser 93.9 0.45 9.8E-06 40.2 8.4 100 131-238 136-235 (491)
275 COG5187 RPN7 26S proteasome re 93.9 1 2.2E-05 37.3 10.2 79 146-224 89-167 (412)
276 KOG3616 Selective LIM binding 93.8 2.8 6E-05 39.4 13.7 104 137-240 770-910 (1636)
277 PF09613 HrpB1_HrpK: Bacterial 93.8 1.3 2.9E-05 33.3 10.0 85 132-228 10-94 (160)
278 KOG1464 COP9 signalosome, subu 93.7 1.1 2.4E-05 36.9 10.0 135 97-243 42-176 (440)
279 KOG3081 Vesicle coat complex C 93.6 1.9 4.2E-05 35.3 11.1 52 186-243 187-238 (299)
280 KOG1308 Hsp70-interacting prot 93.5 0.045 9.7E-07 46.0 1.9 64 132-201 148-211 (377)
281 PF10373 EST1_DNA_bind: Est1 D 93.4 0.22 4.7E-06 40.9 6.0 62 151-224 1-62 (278)
282 PF02259 FAT: FAT domain; Int 93.3 2.3 5E-05 36.0 12.3 114 128-243 142-289 (352)
283 COG5187 RPN7 26S proteasome re 93.3 4.1 8.8E-05 34.0 12.7 113 128-243 111-223 (412)
284 PF07721 TPR_4: Tetratricopept 93.2 0.14 3E-06 25.9 2.8 22 214-235 3-24 (26)
285 PF02259 FAT: FAT domain; Int 92.7 4.2 9E-05 34.4 13.0 86 134-225 186-305 (352)
286 COG0790 FOG: TPR repeat, SEL1 92.7 2.5 5.4E-05 35.0 11.3 95 134-241 111-220 (292)
287 COG2909 MalT ATP-dependent tra 92.5 10 0.00022 36.2 16.0 114 129-242 494-648 (894)
288 PF07079 DUF1347: Protein of u 92.4 4 8.8E-05 36.0 12.1 52 179-237 469-520 (549)
289 PF07721 TPR_4: Tetratricopept 92.4 0.21 4.5E-06 25.2 2.8 23 174-196 3-25 (26)
290 KOG3364 Membrane protein invol 92.3 2.7 5.9E-05 30.8 9.4 71 134-214 34-107 (149)
291 COG4649 Uncharacterized protei 92.3 4.2 9.1E-05 31.3 12.6 101 132-240 94-195 (221)
292 PF13281 DUF4071: Domain of un 92.3 4.4 9.5E-05 35.1 12.3 97 138-241 147-255 (374)
293 PF11207 DUF2989: Protein of u 92.2 1.6 3.5E-05 34.2 8.7 84 142-233 116-199 (203)
294 PF07079 DUF1347: Protein of u 92.2 1.6 3.4E-05 38.5 9.4 62 129-197 459-520 (549)
295 KOG3364 Membrane protein invol 92.1 2.9 6.3E-05 30.7 9.2 68 171-242 31-101 (149)
296 KOG3783 Uncharacterized conser 92.0 1.6 3.5E-05 39.1 9.4 80 163-242 440-521 (546)
297 KOG1839 Uncharacterized protei 91.9 0.98 2.1E-05 44.4 8.7 111 132-242 973-1087(1236)
298 KOG1070 rRNA processing protei 91.9 7.1 0.00015 39.3 14.2 97 134-240 1532-1628(1710)
299 KOG2053 Mitochondrial inherita 91.9 3.1 6.8E-05 39.5 11.5 82 134-228 45-126 (932)
300 KOG1310 WD40 repeat protein [G 91.8 0.9 2E-05 40.7 7.6 95 136-242 378-475 (758)
301 KOG2908 26S proteasome regulat 91.5 7.9 0.00017 32.9 12.6 96 143-238 86-183 (380)
302 KOG2581 26S proteasome regulat 91.5 4.2 9.1E-05 35.4 11.0 110 132-243 169-278 (493)
303 KOG1550 Extracellular protein 91.4 1.6 3.6E-05 39.9 9.3 92 134-241 290-393 (552)
304 PRK10941 hypothetical protein; 91.3 3.3 7.1E-05 34.2 10.2 65 131-201 180-244 (269)
305 PF04184 ST7: ST7 protein; In 91.3 11 0.00023 33.9 14.7 64 130-197 257-320 (539)
306 PF14561 TPR_20: Tetratricopep 90.8 1.3 2.8E-05 30.0 6.2 77 152-238 8-84 (90)
307 KOG2047 mRNA splicing factor [ 90.8 4.9 0.00011 37.1 11.3 111 131-241 247-416 (835)
308 PF04190 DUF410: Protein of un 90.7 8.3 0.00018 31.6 13.1 102 134-236 12-114 (260)
309 PF10952 DUF2753: Protein of u 90.6 4.9 0.00011 28.9 9.4 64 177-240 6-78 (140)
310 COG3629 DnrI DNA-binding trans 90.4 7.2 0.00016 32.4 11.3 66 171-242 152-217 (280)
311 KOG3824 Huntingtin interacting 90.3 1.1 2.4E-05 37.5 6.4 61 175-241 119-179 (472)
312 PF12739 TRAPPC-Trs85: ER-Golg 90.2 10 0.00022 33.5 12.9 105 137-241 213-329 (414)
313 KOG0686 COP9 signalosome, subu 90.0 5.1 0.00011 34.8 10.3 102 134-238 152-255 (466)
314 KOG1839 Uncharacterized protei 89.9 11 0.00023 37.7 13.4 118 126-243 1009-1130(1236)
315 PF10952 DUF2753: Protein of u 89.8 5.4 0.00012 28.7 8.7 67 136-202 5-80 (140)
316 PF10345 Cohesin_load: Cohesin 89.8 17 0.00036 33.8 19.5 111 130-242 98-209 (608)
317 PF08631 SPO22: Meiosis protei 89.7 10 0.00023 31.3 14.6 109 130-242 33-151 (278)
318 KOG0687 26S proteasome regulat 89.5 8.1 0.00018 32.7 10.8 77 148-224 80-156 (393)
319 TIGR02561 HrpB1_HrpK type III 89.3 4.9 0.00011 30.0 8.5 83 134-228 12-94 (153)
320 KOG1915 Cell cycle control pro 89.0 2.7 5.9E-05 37.3 8.1 90 143-243 448-538 (677)
321 COG3898 Uncharacterized membra 88.9 13 0.00028 32.4 11.9 95 134-240 122-216 (531)
322 COG4976 Predicted methyltransf 88.8 0.8 1.7E-05 36.7 4.4 55 182-242 5-59 (287)
323 PF15015 NYD-SP12_N: Spermatog 88.6 14 0.00031 32.5 12.0 106 95-206 189-296 (569)
324 KOG1497 COP9 signalosome, subu 88.6 12 0.00026 31.7 11.2 112 128-240 99-212 (399)
325 cd02682 MIT_AAA_Arch MIT: doma 88.6 1.6 3.5E-05 28.4 5.0 30 172-201 6-35 (75)
326 TIGR03504 FimV_Cterm FimV C-te 88.5 1.1 2.4E-05 25.9 3.8 25 216-240 3-27 (44)
327 COG3947 Response regulator con 88.5 4.8 0.0001 33.6 8.7 63 175-243 282-344 (361)
328 KOG1463 26S proteasome regulat 88.4 15 0.00033 31.4 12.7 94 146-239 102-195 (411)
329 COG5159 RPN6 26S proteasome re 88.3 6.4 0.00014 32.8 9.3 94 146-239 99-192 (421)
330 KOG1070 rRNA processing protei 88.1 18 0.00038 36.7 13.5 99 132-240 1564-1662(1710)
331 PF04212 MIT: MIT (microtubule 88.0 2 4.4E-05 27.3 5.3 30 172-201 5-34 (69)
332 KOG0546 HSP90 co-chaperone CPR 87.9 0.29 6.3E-06 41.4 1.6 101 136-242 226-339 (372)
333 KOG2041 WD40 repeat protein [G 87.8 19 0.0004 33.9 12.7 70 167-236 791-876 (1189)
334 PF07720 TPR_3: Tetratricopept 87.8 2.7 5.8E-05 23.1 4.9 22 174-195 3-24 (36)
335 COG4976 Predicted methyltransf 87.7 1.1 2.3E-05 36.0 4.5 54 142-201 5-58 (287)
336 KOG1463 26S proteasome regulat 87.3 17 0.00038 31.0 11.5 102 127-228 163-265 (411)
337 PF07720 TPR_3: Tetratricopept 87.3 2.9 6.4E-05 22.9 4.9 28 213-240 2-31 (36)
338 TIGR03504 FimV_Cterm FimV C-te 86.6 3.1 6.8E-05 24.0 5.0 25 176-200 3-27 (44)
339 cd02679 MIT_spastin MIT: domai 85.9 2.2 4.8E-05 28.1 4.6 30 172-201 8-37 (79)
340 KOG3783 Uncharacterized conser 85.8 20 0.00043 32.4 11.7 76 126-201 443-520 (546)
341 cd02680 MIT_calpain7_2 MIT: do 85.7 7.7 0.00017 25.3 7.3 20 185-204 19-38 (75)
342 COG4649 Uncharacterized protei 85.6 5.3 0.00011 30.8 7.0 88 139-234 65-154 (221)
343 PF05053 Menin: Menin; InterP 85.6 8.3 0.00018 35.0 9.3 87 156-243 261-349 (618)
344 PF14561 TPR_20: Tetratricopep 85.1 5.2 0.00011 27.0 6.3 44 192-241 8-51 (90)
345 cd02681 MIT_calpain7_1 MIT: do 84.9 3.3 7.1E-05 27.1 5.0 31 171-201 5-35 (76)
346 COG3629 DnrI DNA-binding trans 84.5 9 0.00019 31.8 8.6 73 131-209 152-225 (280)
347 COG5091 SGT1 Suppressor of G2 84.3 3.9 8.3E-05 33.6 6.1 60 145-204 52-111 (368)
348 PF04212 MIT: MIT (microtubule 84.2 4.5 9.8E-05 25.6 5.5 34 131-164 4-37 (69)
349 KOG2047 mRNA splicing factor [ 83.0 11 0.00023 35.0 9.0 95 138-242 483-580 (835)
350 KOG1464 COP9 signalosome, subu 83.0 26 0.00056 29.2 10.4 95 146-242 41-135 (440)
351 COG0790 FOG: TPR repeat, SEL1 82.9 25 0.00054 28.9 11.9 91 134-241 150-266 (292)
352 COG5091 SGT1 Suppressor of G2 82.9 2.1 4.5E-05 35.1 4.1 59 186-244 53-111 (368)
353 PF11207 DUF2989: Protein of u 82.7 3.6 7.8E-05 32.3 5.3 59 132-193 141-199 (203)
354 PF10255 Paf67: RNA polymerase 82.3 7.3 0.00016 34.1 7.6 72 134-206 124-198 (404)
355 PF10255 Paf67: RNA polymerase 82.3 3.3 7.1E-05 36.2 5.5 69 174-243 124-195 (404)
356 KOG4014 Uncharacterized conser 82.2 6.6 0.00014 30.5 6.4 88 146-241 41-141 (248)
357 KOG4507 Uncharacterized conser 82.2 3.1 6.8E-05 37.9 5.3 62 134-201 644-705 (886)
358 cd02681 MIT_calpain7_1 MIT: do 81.7 12 0.00026 24.4 8.4 34 131-164 5-38 (76)
359 COG2912 Uncharacterized conser 81.3 12 0.00025 30.9 7.9 70 169-244 178-247 (269)
360 cd02679 MIT_spastin MIT: domai 81.0 6.9 0.00015 25.8 5.4 36 129-164 5-40 (79)
361 cd02683 MIT_1 MIT: domain cont 81.0 5.1 0.00011 26.2 4.8 30 172-201 6-35 (77)
362 KOG4322 Anaphase-promoting com 80.9 39 0.00085 29.8 14.9 117 126-242 267-383 (482)
363 COG2178 Predicted RNA-binding 80.1 22 0.00047 27.8 8.6 104 138-241 35-150 (204)
364 PF08626 TRAPPC9-Trs120: Trans 80.0 5 0.00011 40.4 6.6 56 130-185 240-295 (1185)
365 PRK13184 pknD serine/threonine 79.5 4.4 9.5E-05 39.4 5.7 98 97-207 490-587 (932)
366 COG5159 RPN6 26S proteasome re 79.2 37 0.0008 28.5 14.7 111 131-241 44-154 (421)
367 COG3947 Response regulator con 78.7 24 0.00051 29.6 8.9 59 137-201 284-342 (361)
368 KOG0686 COP9 signalosome, subu 78.0 44 0.00096 29.3 10.6 84 155-241 133-216 (466)
369 cd02680 MIT_calpain7_2 MIT: do 77.7 17 0.00036 23.7 7.3 40 131-170 5-44 (75)
370 PF13281 DUF4071: Domain of un 77.5 15 0.00032 31.9 7.9 89 147-242 241-335 (374)
371 cd02683 MIT_1 MIT: domain cont 76.3 10 0.00022 24.8 5.2 34 131-164 5-38 (77)
372 KOG2041 WD40 repeat protein [G 75.6 8.5 0.00018 36.0 6.1 34 206-239 790-823 (1189)
373 cd02682 MIT_AAA_Arch MIT: doma 74.9 20 0.00044 23.3 8.4 34 131-164 5-38 (75)
374 smart00745 MIT Microtubule Int 74.7 15 0.00032 23.7 5.7 20 185-204 21-40 (77)
375 COG3118 Thioredoxin domain-con 73.6 17 0.00036 30.4 6.8 56 176-237 138-193 (304)
376 PF00244 14-3-3: 14-3-3 protei 73.6 25 0.00054 28.4 7.9 53 189-241 143-198 (236)
377 cd02656 MIT MIT: domain contai 73.0 13 0.00028 23.9 5.1 30 172-201 6-35 (75)
378 cd02684 MIT_2 MIT: domain cont 72.2 15 0.00033 23.8 5.2 25 138-162 12-36 (75)
379 smart00671 SEL1 Sel1-like repe 71.9 9.2 0.0002 20.1 3.6 28 213-240 2-33 (36)
380 PF05053 Menin: Menin; InterP 71.6 21 0.00045 32.6 7.4 59 148-207 295-353 (618)
381 KOG1310 WD40 repeat protein [G 71.4 29 0.00062 31.6 8.1 97 81-199 373-472 (758)
382 COG3914 Spy Predicted O-linked 71.2 52 0.0011 30.3 9.8 100 138-243 73-173 (620)
383 PF01535 PPR: PPR repeat; Int 71.1 8.4 0.00018 19.3 3.2 25 215-239 3-27 (31)
384 PF08238 Sel1: Sel1 repeat; I 70.8 13 0.00027 20.0 4.1 28 213-240 2-36 (39)
385 cd02677 MIT_SNX15 MIT: domain 70.7 13 0.00028 24.2 4.6 30 172-201 6-35 (75)
386 PF12854 PPR_1: PPR repeat 70.4 12 0.00027 19.9 3.8 26 212-237 7-32 (34)
387 PF09670 Cas_Cas02710: CRISPR- 70.2 74 0.0016 27.7 14.6 106 133-242 132-271 (379)
388 cd02678 MIT_VPS4 MIT: domain c 70.0 18 0.00038 23.4 5.2 25 138-162 12-36 (75)
389 COG2178 Predicted RNA-binding 69.5 36 0.00078 26.6 7.4 74 156-236 20-93 (204)
390 PF04910 Tcf25: Transcriptiona 69.0 76 0.0017 27.4 12.5 102 131-238 39-165 (360)
391 PF04053 Coatomer_WDAD: Coatom 68.8 63 0.0014 28.9 9.9 41 155-199 334-374 (443)
392 cd02656 MIT MIT: domain contai 68.5 20 0.00044 23.0 5.2 33 132-164 6-38 (75)
393 PF07219 HemY_N: HemY protein 68.2 32 0.0007 23.9 6.6 31 131-161 58-88 (108)
394 TIGR00756 PPR pentatricopeptid 68.2 14 0.00031 18.8 4.0 26 215-240 3-28 (35)
395 PF08626 TRAPPC9-Trs120: Trans 68.1 13 0.00029 37.5 6.2 54 171-224 241-294 (1185)
396 cd02684 MIT_2 MIT: domain cont 67.9 19 0.0004 23.4 4.9 30 172-201 6-35 (75)
397 KOG2114 Vacuolar assembly/sort 67.3 14 0.0003 35.2 5.6 49 153-201 348-397 (933)
398 COG3014 Uncharacterized protei 65.2 91 0.002 26.9 12.9 71 131-201 57-154 (449)
399 cd02677 MIT_SNX15 MIT: domain 65.2 29 0.00063 22.5 5.4 28 134-161 8-35 (75)
400 PF13041 PPR_2: PPR repeat fam 64.7 19 0.00041 20.8 4.2 28 213-240 4-31 (50)
401 KOG2908 26S proteasome regulat 63.6 96 0.0021 26.6 12.1 62 181-242 84-145 (380)
402 PF00244 14-3-3: 14-3-3 protei 63.6 63 0.0014 26.1 8.3 56 149-205 143-202 (236)
403 PF04781 DUF627: Protein of un 63.2 27 0.0006 24.6 5.3 45 178-225 2-46 (111)
404 KOG4563 Cell cycle-regulated h 62.8 45 0.00097 28.8 7.4 67 128-194 37-105 (400)
405 PF11846 DUF3366: Domain of un 62.3 70 0.0015 24.6 8.4 30 172-201 144-173 (193)
406 KOG2581 26S proteasome regulat 62.2 1.1E+02 0.0024 27.0 15.9 64 127-190 242-305 (493)
407 PHA02537 M terminase endonucle 62.1 83 0.0018 25.4 8.9 98 143-242 94-208 (230)
408 PF13812 PPR_3: Pentatricopept 61.4 21 0.00045 18.2 4.4 27 214-240 3-29 (34)
409 smart00745 MIT Microtubule Int 61.3 41 0.00088 21.6 8.5 37 128-164 4-40 (77)
410 KOG0739 AAA+-type ATPase [Post 61.1 69 0.0015 27.2 8.0 15 186-200 24-38 (439)
411 PF04190 DUF410: Protein of un 60.2 82 0.0018 25.8 8.5 89 152-241 70-170 (260)
412 PF04053 Coatomer_WDAD: Coatom 58.9 59 0.0013 29.0 7.9 30 211-240 346-375 (443)
413 COG3162 Predicted membrane pro 58.7 48 0.001 22.8 5.6 36 55-90 62-97 (102)
414 KOG0546 HSP90 co-chaperone CPR 58.5 11 0.00025 32.1 3.2 61 135-201 278-338 (372)
415 KOG2114 Vacuolar assembly/sort 57.8 35 0.00076 32.7 6.4 28 131-158 367-394 (933)
416 smart00101 14_3_3 14-3-3 homol 57.7 1E+02 0.0022 25.1 9.5 74 130-203 116-202 (244)
417 PF09613 HrpB1_HrpK: Bacterial 56.7 85 0.0018 23.8 8.8 65 170-240 8-72 (160)
418 COG2912 Uncharacterized conser 55.5 74 0.0016 26.3 7.3 59 137-201 186-244 (269)
419 KOG2034 Vacuolar sorting prote 53.6 28 0.0006 33.5 5.1 27 171-197 388-414 (911)
420 KOG0985 Vesicle coat protein c 53.4 1.2E+02 0.0027 30.2 9.2 60 172-242 1104-1163(1666)
421 COG3898 Uncharacterized membra 51.9 1.7E+02 0.0037 25.9 12.4 55 141-201 163-217 (531)
422 PF14863 Alkyl_sulf_dimr: Alky 51.4 78 0.0017 23.4 6.3 50 174-229 72-121 (141)
423 PRK15180 Vi polysaccharide bio 51.0 77 0.0017 28.7 7.1 92 138-241 329-420 (831)
424 KOG3807 Predicted membrane pro 51.0 1.6E+02 0.0035 25.4 9.2 33 168-200 271-303 (556)
425 KOG2709 Uncharacterized conser 49.7 1.1E+02 0.0023 27.2 7.6 33 172-204 22-54 (560)
426 COG1747 Uncharacterized N-term 49.4 2.1E+02 0.0046 26.3 11.1 74 154-242 88-161 (711)
427 PF09670 Cas_Cas02710: CRISPR- 49.1 1.8E+02 0.0039 25.3 13.2 105 88-204 137-273 (379)
428 PF09205 DUF1955: Domain of un 49.1 1.1E+02 0.0023 22.7 7.5 31 210-240 118-148 (161)
429 smart00101 14_3_3 14-3-3 homol 48.5 1.5E+02 0.0032 24.2 8.5 70 172-241 125-200 (244)
430 KOG4014 Uncharacterized conser 47.8 1.2E+02 0.0025 23.9 6.8 74 134-223 70-155 (248)
431 KOG2561 Adaptor protein NUB1, 47.4 2.1E+02 0.0046 25.6 10.0 109 134-242 165-297 (568)
432 cd02678 MIT_VPS4 MIT: domain c 47.2 75 0.0016 20.4 8.3 28 177-204 11-38 (75)
433 TIGR01716 RGG_Cterm transcript 47.2 1.4E+02 0.0029 23.4 9.1 74 134-207 130-203 (220)
434 PF04910 Tcf25: Transcriptiona 44.6 2.1E+02 0.0045 24.8 11.0 71 171-241 39-132 (360)
435 PF14689 SPOB_a: Sensor_kinase 43.5 78 0.0017 19.5 7.2 28 215-242 26-53 (62)
436 cd09247 BRO1_Alix_like_2 Prote 42.4 2.2E+02 0.0048 24.4 9.2 56 150-205 214-286 (346)
437 PF03635 Vps35: Vacuolar prote 42.3 3.3E+02 0.0071 26.4 11.2 111 133-243 593-716 (762)
438 COG3014 Uncharacterized protei 40.6 2.4E+02 0.0053 24.4 11.8 112 129-242 122-243 (449)
439 KOG2709 Uncharacterized conser 40.2 1.1E+02 0.0024 27.0 6.3 34 131-164 21-54 (560)
440 PF08969 USP8_dimer: USP8 dime 40.2 95 0.0021 21.8 5.2 31 212-242 38-68 (115)
441 PF14858 DUF4486: Domain of un 40.1 2.9E+02 0.0063 25.4 9.1 69 175-243 154-228 (542)
442 KOG0890 Protein kinase of the 39.2 2.8E+02 0.0061 30.4 9.8 68 168-243 1666-1733(2382)
443 KOG4563 Cell cycle-regulated h 38.7 1.7E+02 0.0037 25.4 7.1 61 172-232 41-103 (400)
444 PF07219 HemY_N: HemY protein 38.7 1.3E+02 0.0029 20.8 7.4 49 173-227 60-108 (108)
445 PHA02537 M terminase endonucle 38.5 99 0.0022 24.9 5.5 47 127-173 164-219 (230)
446 KOG0890 Protein kinase of the 38.2 5.9E+02 0.013 28.2 14.6 108 128-243 1666-1786(2382)
447 KOG4151 Myosin assembly protei 36.5 74 0.0016 30.3 5.0 93 134-234 55-149 (748)
448 cd09245 BRO1_UmRIM23-like Prot 35.4 2.3E+02 0.0051 25.0 7.9 34 171-204 295-328 (413)
449 TIGR03362 VI_chp_7 type VI sec 35.4 2.5E+02 0.0055 23.6 7.7 62 179-243 220-281 (301)
450 PF11846 DUF3366: Domain of un 35.3 1.1E+02 0.0025 23.4 5.4 30 134-163 146-175 (193)
451 cd08977 SusD starch binding ou 34.7 1.3E+02 0.0029 25.6 6.2 32 209-240 173-209 (359)
452 PF02064 MAS20: MAS20 protein 34.0 1.2E+02 0.0025 21.8 4.8 26 177-202 68-93 (121)
453 TIGR02561 HrpB1_HrpK type III 33.0 2.1E+02 0.0046 21.5 7.7 64 171-240 9-72 (153)
454 cd09034 BRO1_Alix_like Protein 31.6 2.8E+02 0.0062 23.5 7.7 55 150-204 211-283 (345)
455 cd09243 BRO1_Brox_like Protein 31.5 3E+02 0.0065 23.8 7.7 35 170-204 246-280 (353)
456 PRK04778 septation ring format 31.4 4.3E+02 0.0093 24.5 9.4 68 177-244 484-551 (569)
457 KOG2034 Vacuolar sorting prote 30.2 1.2E+02 0.0026 29.5 5.3 18 139-156 365-382 (911)
458 cd09242 BRO1_ScBro1_like Prote 29.9 3.3E+02 0.0072 23.4 7.8 34 171-204 243-276 (348)
459 PF12309 KBP_C: KIF-1 binding 29.5 1.3E+02 0.0029 26.1 5.3 55 189-243 266-340 (371)
460 PRK04778 septation ring format 29.1 3.4E+02 0.0074 25.1 8.2 78 140-225 487-564 (569)
461 KOG1953 Targeting complex (TRA 28.8 41 0.00089 33.0 2.2 51 171-221 244-294 (1235)
462 COG5290 IkappaB kinase complex 28.4 1.7E+02 0.0037 28.4 5.9 26 214-239 937-962 (1243)
463 KOG0276 Vesicle coat complex C 28.2 1E+02 0.0023 28.7 4.5 28 213-240 667-694 (794)
464 PRK11619 lytic murein transgly 28.0 5.2E+02 0.011 24.4 10.0 52 183-240 323-374 (644)
465 PF08969 USP8_dimer: USP8 dime 27.7 2.2E+02 0.0047 19.9 5.4 35 130-164 36-70 (115)
466 PF08424 NRDE-2: NRDE-2, neces 27.4 3.8E+02 0.0082 22.6 10.5 86 149-243 48-133 (321)
467 COG4455 ImpE Protein of avirul 27.3 1.7E+02 0.0038 23.7 5.1 29 173-201 36-64 (273)
468 KOG4521 Nuclear pore complex, 27.2 3.8E+02 0.0081 27.4 8.1 64 136-206 924-997 (1480)
469 KOG2396 HAT (Half-A-TPR) repea 27.1 4.2E+02 0.009 24.3 7.8 48 188-241 121-169 (568)
470 TIGR01716 RGG_Cterm transcript 26.9 3E+02 0.0066 21.3 9.9 73 171-243 127-199 (220)
471 smart00386 HAT HAT (Half-A-TPR 26.8 90 0.002 15.2 3.7 16 186-201 1-16 (33)
472 cd09247 BRO1_Alix_like_2 Prote 26.6 2.4E+02 0.0051 24.2 6.4 33 211-243 252-284 (346)
473 PF02064 MAS20: MAS20 protein 26.5 1.1E+02 0.0024 21.9 3.6 31 134-164 65-95 (121)
474 COG5107 RNA14 Pre-mRNA 3'-end 25.9 3E+02 0.0065 24.9 6.7 74 154-242 290-363 (660)
475 PF08771 Rapamycin_bind: Rapam 25.5 2.3E+02 0.0049 19.4 8.2 77 138-224 20-96 (100)
476 PF12753 Nro1: Nuclear pore co 24.9 89 0.0019 27.4 3.4 35 191-226 330-364 (404)
477 KOG1258 mRNA processing protei 24.9 5.7E+02 0.012 23.8 11.2 105 135-245 369-474 (577)
478 KOG1920 IkappaB kinase complex 24.5 7.8E+02 0.017 25.2 12.6 14 99-112 890-903 (1265)
479 PF04097 Nic96: Nup93/Nic96; 24.0 6.1E+02 0.013 23.8 10.2 100 132-237 414-530 (613)
480 COG4259 Uncharacterized protei 23.2 2.7E+02 0.0058 19.4 5.4 29 173-201 73-101 (121)
481 PF06295 DUF1043: Protein of u 23.0 2.9E+02 0.0064 19.8 5.9 8 103-110 42-49 (128)
482 KOG3677 RNA polymerase I-assoc 22.6 84 0.0018 27.8 2.8 68 134-205 237-305 (525)
483 KOG1953 Targeting complex (TRA 22.0 60 0.0013 31.9 1.9 49 134-182 247-295 (1235)
484 cd00215 PTS_IIA_lac PTS_IIA, P 21.8 2.7E+02 0.0059 19.0 6.8 34 131-164 14-47 (97)
485 smart00770 Zn_dep_PLPC Zinc de 21.5 3.9E+02 0.0085 21.8 6.2 44 127-170 109-152 (241)
486 PRK11677 hypothetical protein; 21.4 3.4E+02 0.0073 19.9 6.3 8 157-164 80-87 (134)
487 PF03745 DUF309: Domain of unk 21.4 2.1E+02 0.0046 17.6 4.7 55 138-194 5-61 (62)
488 KOG2997 F-box protein FBX9 [Ge 21.2 2.2E+02 0.0048 24.3 4.9 39 126-164 13-51 (366)
489 cd08977 SusD starch binding ou 21.2 3.4E+02 0.0074 23.0 6.4 31 170-200 174-209 (359)
490 KOG2460 Signal recognition par 20.9 4E+02 0.0086 24.5 6.6 98 148-245 387-495 (593)
491 PF08311 Mad3_BUB1_I: Mad3/BUB 20.5 3.3E+02 0.0071 19.4 11.4 87 146-239 40-126 (126)
492 PF07980 SusD: SusD family; I 20.2 2.5E+02 0.0053 22.3 5.1 28 171-198 132-159 (266)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.50 E-value=2.5e-13 Score=118.58 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965 87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK 166 (245)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 166 (245)
+....+.+.++-.++...|.+++.+.+. .+.+.+++|++|..+|++++|...|++|++..+.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~----------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-- 386 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPN----------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-- 386 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh--
Confidence 3333344444444555566666665543 3557788899999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+.+++|||.+|..+|++++|+..|+++|++ +|..++++.|+|.+|.++|+.+.|+++|.+||..
T Consensus 387 ----~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 387 ----FAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred ----hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999 8999999999999999999999999999999875
No 2
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=3.9e-13 Score=104.63 Aligned_cols=128 Identities=17% Similarity=0.221 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965 89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 168 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 168 (245)
+..+....+...+..++.+++...|. ...++..++.+|...|+.+.|.+.|++|+.+.|+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---- 101 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---- 101 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----
Confidence 34444455667777788888887665 3557778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....++|.|..++.+|+|++|..+|++|+.-. ..+..+.++.|+|.|..+.|+.++|.++|+++++.-
T Consensus 102 --~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 102 --NGDVLNNYGAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred --ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 88899999999999999999999999998642 245678899999999999999999999999999864
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=1.3e-12 Score=97.69 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=91.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
....|.++...|++++|..+|++++.+.|. ...++.++|.++...|++++|+..|.+++.+ +|..+.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHH
Confidence 445799999999999999999999999888 8899999999999999999999999999998 8889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++++|.++...|++++|+..|+++++...
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998654
No 4
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=9e-12 Score=97.99 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=103.9
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+..+..+++++...|. ....+..+|.+|...|++++|+..|++++++.++ ....+.
T Consensus 54 ~~~~~i~~l~~~L~~~P~----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~ 111 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYA 111 (198)
T ss_pred hHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 445666677777776654 2447788899999999999999999999999998 889999
Q ss_pred HHHHHH-HHcCC--HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 177 GLGASL-QRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 177 ~lg~~~-~~~g~--~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
++|.++ ...|+ +++|...++++++. +|....++.++|..+...|++++|+.+|+++++....
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999975 67787 59999999999999 8889999999999999999999999999999987643
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=3.4e-12 Score=111.62 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+++.+.-..+.+..+.++.-|.+++...+. -+.++.++|.+|.++|++++|+..|++|+++.|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~----------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPE----------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChh----------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 4444444444444556677777777776654 455788899999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
. .+.++.|+|.+|..+|+.+.|+..|.+||.+ .|..++++.|+|.+|...|+..+|++.|+.++.+-
T Consensus 420 ~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 420 T------FADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred h------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9 9999999999999999999999999999999 99999999999999999999999999999998753
No 6
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=1.1e-11 Score=92.19 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
...+...+..|..++..|++++|...|+-...+.+. ....+++||.++..+|+|++|+..|.+++.+ +
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~ 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------K 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence 445667888899999999999999999999999998 8999999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++.+.++.+.|.||...|+.+.|.+.|+.++...
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999876
No 7
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.35 E-value=1.5e-11 Score=81.94 Aligned_cols=73 Identities=29% Similarity=0.560 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.++.++|.++..+|+|++|+++|++++++.+..+++. ..+.++.++|.+|..+|++++|.+++++++++.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 678899999999999999999999999999977777654 5689999999999999999999999999999875
No 8
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=7.2e-12 Score=101.15 Aligned_cols=103 Identities=25% Similarity=0.365 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
....+..+-.-|+-....++|.+|+..|.+|+++.|+ .+..|.+.+.+|.++|.|+.|++.++.++.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 4566777778899999999999999999999999998 8999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+|..+.+|..+|.+|..+|++++|++.|++++++-
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999864
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=2.7e-11 Score=101.35 Aligned_cols=102 Identities=20% Similarity=0.094 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
..+..++.+|.+|...|++++|+..|++++++.|+ ...+++++|.++...|++++|+..|++++++ +|
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------DP 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CC
Confidence 34567888899999999999999999999998887 7889999999999999999999999999998 88
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....++.++|.++...|++++|.+.++++++...
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999999999987654
No 10
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.30 E-value=2.9e-10 Score=94.47 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
-....+..+........+.+.|.++...... .++....+..+...+.+|... ++++|+.+|++|++++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence 3334444444444667777778877776654 255556666777777777665 99999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 164 NVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~-g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+++...+.++.++|.+|... |++++|+++|++|+++++..+.......++..+|.++..+|+|++|++.|++....
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998 99999999999999999999977788889999999999999999999999998764
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=4.6e-11 Score=87.98 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
......+|..+...|++++|...++++++..+. ...++.++|.++..+|++++|+.+++++++. .|..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAAL------DPDD 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCC
Confidence 456778899999999999999999999998776 7788999999999999999999999999988 6778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++++|.+|...|++++|..+++++++...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999998754
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.4e-10 Score=91.95 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
....+|..+...|++++|...++++++..+ .......+.++|.++...|++++|...+.++++. .+....
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~ 170 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------DPQRPE 170 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCChH
Confidence 566778999999999999999999886422 1224556788999999999999999999999887 555667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++..+|.++...|++++|..+++++++.
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999998876
No 13
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-11 Score=103.55 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.++-++|+.|+.+|+|+.|+.+.+.-+++++..+|......++.|+|.++.-.|+++.|+++|++.+.++.+.++....+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555554445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...|.+|.+|.-..++++|+.|+++=+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544443
No 14
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.5e-10 Score=93.54 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025965 78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 157 (245)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 157 (245)
.....+++..++.+.....+++.++..|.++|.+.|. .+..+.+++.+|.++|.|+.|+...+.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445568999999999999999999999999998875 244666899999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025965 158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 229 (245)
Q Consensus 158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~ 229 (245)
|+.+.+. ..++|..||.+|..+|+|++|++.|+++|++ +|.......+|..+-.++++-+
T Consensus 141 Al~iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLel------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALEL------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999 9999999999999999999999999999999 8888888888887777666544
No 15
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.24 E-value=9.8e-11 Score=98.33 Aligned_cols=117 Identities=20% Similarity=0.286 Sum_probs=109.5
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+|+-.+-.++.++|++|.-.|+++.|+++|++++.++..+++..-.+..++.+|..|.-..++++||+|+.+-+.++++.
T Consensus 229 GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 229 GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555666777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+|..+...+++.+|.+|..+|+.++|..+.++.++..
T Consensus 309 ~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 309 EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888754
No 16
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=7.9e-10 Score=97.47 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=118.9
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHH
Q 025965 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKK 173 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~ 173 (245)
.....++..|++++..... ....+.+..+..+.++|..|+..|+|++|..++++|+++.... ..+.....
T Consensus 255 ~k~~eAv~ly~~AL~i~e~--------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREE--------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred ccHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3567777778888776543 1225667788889999999999999999999999999999873 35555777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 174 AARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.+++.++..++++++|+.++++++++.... .+++..+..+.++|.+|...|++++|.+.|++|+.+.+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999853 44557888999999999999999999999999999875
No 17
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.24 E-value=2.6e-10 Score=75.88 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
..+.++.++|.+|..+|++++|+.+|++++++....++... .+.++.++|.++..+|++++|++++++++++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 35667889999999999999999999999999888887654 689999999999999999999999999999865
No 18
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.24 E-value=5e-10 Score=85.86 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
.+....+..++..|..+..+|++++|+..|++++.+.++ +.....++.++|.++...|++++|+.++++++++
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---- 101 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---- 101 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 444557788889999999999999999999999987543 3334568999999999999999999999999988
Q ss_pred CCcchHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHhh
Q 025965 206 GEYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~-------~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.....+.++|.+|. .+|+++.|..++++++..++
T Consensus 102 --~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 102 --NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred --CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5555666777777777 88999988888888776643
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=3.8e-10 Score=103.62 Aligned_cols=98 Identities=9% Similarity=0.156 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
..++.+|.+++..|++++|+..|++++++.|+ ...++.++|.++..+|++++|+..|+++++. .|..+
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~ 467 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAP 467 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCh
Confidence 35556677777777777777777777777665 5566777777777777777777777777766 56666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.++.++|.++...|++++|+.+|++++...
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 777777777777778888887777777654
No 20
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=1.1e-09 Score=84.20 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
.++...+..++..|..+...|++++|+.+|+++++..++.. ....++.++|.++...|++++|+..++++++.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 45566788889999999999999999999999998766422 23568899999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHh
Q 025965 206 GEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISRL 242 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~-------~~~A~~~y~~al~~~ 242 (245)
.|....++.++|.+|...|+ +++|...|+++++.+
T Consensus 102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence 67778888899999988766 455555555555543
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.18 E-value=4.1e-10 Score=103.40 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
++..+.-.....+.+.++..+.+++...|. ....++.+|.++...|++++|+..+++++++.++
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPR----------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 344344444455788899999999987654 2346778899999999999999999999998776
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+++++|.++...|++++|+.+|++++++ .|....++.++|.++..+|++++|...|+++++...
T Consensus 398 ------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 398 ------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999999998 787888999999999999999999999999998654
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.17 E-value=3.4e-10 Score=96.94 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=90.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
+...|...+..|+|++|+..|++|+++.+. ...++.++|.++..+|++++|+..+++++++ .|..+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHH
Confidence 445689999999999999999999999887 7889999999999999999999999999999 8888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|+++|.+|..+|++++|+.+|+++++...
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998653
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.1e-10 Score=94.69 Aligned_cols=117 Identities=19% Similarity=0.355 Sum_probs=75.7
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++.-+++++...|. ...++..+|.-|..+++...|+..|++|+++.|. .-.+++
T Consensus 345 eHEKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWY 402 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWY 402 (559)
T ss_pred hHHHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHh
Confidence 345555566666655443 2334445577777777777777777777777666 666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++|.+|-.++.+.=|+-+|++|+.. .|+.+..+..+|.||.++++.++|+++|.+++..
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6776666666666666666666666 6666666666666666666666666666666643
No 24
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.17 E-value=3.9e-10 Score=76.19 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=69.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965 144 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 223 (245)
Q Consensus 144 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~ 223 (245)
.+|+|+.|+.+++++++..+. ++ ....+..+|.+++++|+|++|+..+++ ++. ++......+.+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLL 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHH
Confidence 368999999999999998875 22 455677799999999999999999999 555 5556778888899999
Q ss_pred HcCCHHHHHHHHHHH
Q 025965 224 ELGDLERAARFYDKY 238 (245)
Q Consensus 224 ~~g~~~~A~~~y~~a 238 (245)
.+|++++|++.++++
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999875
No 25
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.14 E-value=1.9e-09 Score=89.53 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
-+..+...|..|...|++++|.+.|.++.++....+++...+.++...+.++... ++++|+.+|++|++++.+.|+...
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3445557899999999999999999999999999999999999999999888776 999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc
Q 025965 211 STEAYGAIADCYTEL-GDLERAARFYDKYISRLES 244 (245)
Q Consensus 211 ~~~a~~~la~~y~~~-g~~~~A~~~y~~al~~~~~ 244 (245)
.+.++.++|.+|... |++++|+++|++|++.++.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999998864
No 26
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=5.8e-10 Score=72.31 Aligned_cols=64 Identities=31% Similarity=0.482 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISR 241 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~ 241 (245)
+..+..+|..+...|+|++|+.+|++++++ +|..+.+++++|.+|..+| ++++|+++++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999999 8999999999999999999 799999999999986
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.9e-10 Score=94.02 Aligned_cols=118 Identities=27% Similarity=0.366 Sum_probs=105.7
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
...+++++|..+++..|. ...+++.+|+.|-.++.+.=|+-+|++|.++-|+ ....+.
T Consensus 379 Nt~AAi~sYRrAvdi~p~----------------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~ 436 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPR----------------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWV 436 (559)
T ss_pred ccHHHHHHHHHHHhcCch----------------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHH
Confidence 457888888888887664 5668999999999999999999999999999988 888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.||.+|...++.++|+..|+.|+.. ......++..+|.+|.+++++++|..+|++.++..
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILL------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 33356789999999999999999999999999854
No 28
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=2e-09 Score=77.04 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.++..|..+...|++++|+..++++++..++ ......++..+|.++...|++++|+.+|++++... .+.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccH
Confidence 5677899999999999999999999876543 22346778899999999999999999999998772 22333467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
++..+|.++...|++++|..+++++++...+
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999999987643
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=1.5e-09 Score=84.83 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
+....+...+.+|..|+..|++..|...+++|++..|+ ...++..++.+|...|+.+.|-+.|++|+++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 44455667788899999999999999999999999999 8899999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.|...++++|.|.-...+|++++|..+|++|+..
T Consensus 99 -~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 99 -APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred -CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 8888999999999999999999999999999863
No 30
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.10 E-value=1.9e-08 Score=75.19 Aligned_cols=100 Identities=25% Similarity=0.279 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
....+.+.+|..++..|++++|...|+++++. ..++.....+...++.++..+|+|++|+..++.. .+.+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~ 115 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEA 115 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcc
Confidence 45567888999999999999999999998873 3566777788999999999999999999998662 2355
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 210 GSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
..+.++..+|++|...|++++|...|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 567788899999999999999999999885
No 31
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=9.5e-10 Score=74.14 Aligned_cols=97 Identities=27% Similarity=0.399 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.++.+|..+...|++++|+..++++++..+. ...++..+|.++...|++++|+..++++++. .+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchh
Confidence 3567899999999999999999999987766 4477889999999999999999999999887 455557
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++..+|.++...|++++|..+++++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 89999999999999999999999988654
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=2.3e-10 Score=100.81 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965 91 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
.+.-+.+.+.++..+++++...+. .++++-..|.-+..+.+||+|+.+|++|+.+.++
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------ 487 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPR----------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------ 487 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCc----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------
Confidence 333345667777777777775543 2333444466666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
...|++++|.+|.++++++.|.-+|++|+++ .|........+|..+..+|+.|+|+..|++|+-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 6666666666666666666666666666666 666666666666666666666666666666654
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=2.4e-09 Score=84.89 Aligned_cols=102 Identities=23% Similarity=0.355 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+..+|.++...|++++|...++++++..+. ...++.++|.++...|++++|+..++++++... .+..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~ 134 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQP 134 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccc
Confidence 345566788888888888888888888877655 456777888888888888888888888876421 3344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+.++|.++...|++++|..+++++++...
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 56778888888888888888888888887643
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=1.1e-08 Score=82.56 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+.......+.+.++..+.+.+...|. ++ ....+++.+|.++...|++++|+..|+++++..|
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----------~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPF-----------SP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------ch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 4444455555556677777778877776653 22 2234567889999999999999999999999887
Q ss_pred hCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCcchHH--------------HHHHHHHHH
Q 025965 164 NVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYSGST--------------EAYGAIADC 221 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~--------g~~~~Ai~~~~~al~~~~~~~d~~~~~--------------~a~~~la~~ 221 (245)
+... ...+++.+|.++... |++++|++.++++++.... .+... .....+|.+
T Consensus 102 ~~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 102 NHPD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred CCCc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5332 345788899998876 8899999999999877322 11111 123478999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhh
Q 025965 222 YTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 222 y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|...|++++|...|+++++.++
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCC
Confidence 9999999999999999998754
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=2.1e-09 Score=102.32 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
..+..+|.++...|++++|+..+++++++.|+ ...++.++|.++...|++++|+..|+++++. .|..+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------~P~~~ 677 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKG------LPDDP 677 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCH
Confidence 46678899999999999999999999999998 7889999999999999999999999999998 88889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+++++|.++..+|++++|..+|+++++...
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998653
No 36
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.7e-10 Score=98.99 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
......+|..|+..|+|++|++.|+.||...|+ ....++.||.++....+.++||..|++|+++ .|+.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~y 497 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQL------QPGY 497 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCe
Confidence 346667899999999999999999999999998 8889999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+.+|+|.+|..+|.|++|.++|-.||.+-+
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998654
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=2.1e-08 Score=83.89 Aligned_cols=128 Identities=15% Similarity=0.059 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
..+.+......+..+.++..|.+++...|. ...++..+|.++...|++++|+..|++++++.|+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT 130 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 444444444445677777888888886654 2457788999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...++.++|.++...|++++|+..++++++. .|..+.. ..........+++++|...+++++..
T Consensus 131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~------~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD------DPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999987 4443321 11122345678899999999877654
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-09 Score=93.81 Aligned_cols=104 Identities=22% Similarity=0.306 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
....+|.+.+..+.|.+|..+|+.++...++...... ......|||.++++++.|++||.+|+++|.+ .|..+
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l------~~k~~ 489 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL------SPKDA 489 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc------CCCch
Confidence 5566799999999999999999999988777655543 4456899999999999999999999999999 88889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+|..+|.+|..+|+++.|+++|.+++.+-.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999987543
No 39
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=5.7e-09 Score=86.56 Aligned_cols=136 Identities=24% Similarity=0.280 Sum_probs=120.9
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----ChHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEK 172 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----d~~~~~ 172 (245)
..+..++.+++++.++.. ++|...+...+..+|..|-...|+++|..+..+|.++..+.+ ......
T Consensus 137 ~fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 567778888888888776 477777788888899999999999999999999999998876 233456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
-+++.++.+++.+|....|.++.+++.+++-..||.+..+.+...+|++|..+||.|.|...|+.|....
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998753
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=2e-09 Score=69.72 Aligned_cols=64 Identities=28% Similarity=0.441 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQI 201 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~ 201 (245)
+..+...|..++..|++++|+.+|++++++.++ ...+++++|.++..+| ++++|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456778899999999999999999999999988 8999999999999999 799999999999987
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=5e-09 Score=94.97 Aligned_cols=97 Identities=16% Similarity=-0.018 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.++..+|.++...|++++|+..|++|+++.|+ ...+++.+|.++...|++++|+..+++++++ +|...
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------~P~~~ 406 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKL------DPTRA 406 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCh
Confidence 34556688888888899999889988888887 7778888888888888888888888888887 56555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.++..++.++...|++++|...++++++.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 55555565666677777777777777654
No 42
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.00 E-value=5.1e-08 Score=86.15 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=113.0
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC--hHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD--PIEEKKA 174 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d--~~~~~~a 174 (245)
..+.+...++++++..... ...++...+....++|..|+.+|+|++|.+.|++|++......+ .......
T Consensus 340 ~~Eea~~l~q~al~i~~~~--------~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDA--------PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred chhHHHHHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 5566666666666654321 11233356667778999999999999999999999999988765 5667888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~-d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++++|..+.+.+++.+|...|.+++.+.+..| +.|+....|.|||-+|..+|+++.|.++-++++..-
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996554 567888999999999999999999999999988643
No 43
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.00 E-value=1.2e-08 Score=83.41 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=89.3
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 133 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 133 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+..|..+ ...|+|++|+..|++.++.+|+ ......+++.+|.+|+..|+|++|+..|+++++.+ .+++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence 3455566665 5679999999999999998876 33456789999999999999999999999998773 356678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++++.+|.+|..+|++++|...|++.++.+.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 89999999999999999999999999998764
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=5.1e-09 Score=94.93 Aligned_cols=118 Identities=15% Similarity=0.064 Sum_probs=96.8
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhCCCh
Q 025965 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR---------NQDLEKAFTEFKAALELAQNVKDP 168 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~g~~~~A~~~~~~al~l~~~~~d~ 168 (245)
.+.++..+.+++...|. . ..++..+|.+|.. .+++++|...+++|+++.|+
T Consensus 277 ~~~A~~~~~~Al~ldP~--------------~--a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---- 336 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN--------------S--IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---- 336 (553)
T ss_pred HHHHHHHHHHHHhcCCc--------------c--HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----
Confidence 34556666666665543 2 3344455665542 34589999999999999988
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++..+|.++...|++++|+..|++++++ +|+.+.+++++|.++...|++++|...++++++.-.
T Consensus 337 --~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 337 --NPQALGLLGLINTIHSEYIVGSLLFKQANLL------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 7889999999999999999999999999999 898899999999999999999999999999988643
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=5.1e-09 Score=78.21 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965 89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 168 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 168 (245)
+.......+.+.++..|.+++...|. ....+..+|.++...|++++|+..|++++++.|.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---- 90 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---- 90 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----
Confidence 33334444566677777777776553 3457788899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
...++.++|.++...|++++|+..|.+++++ .|..+..+.+.|.+...+
T Consensus 91 --~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~------~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 --HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM------SYADASWSEIRQNAQIMV 139 (144)
T ss_pred --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999 888888888888776543
No 46
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.92 E-value=1.6e-08 Score=93.39 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCHHH----HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 135 RLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~----A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
...+|..+...|++++ |...|++++++.|+ ...++.++|.++..+|++++|+.++++++++ .|.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~ 316 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLAT------HPD 316 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCC
Confidence 3344555555555543 45555555554444 3444555555555555555555555555544 344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
...++.++|.+|...|++++|...|++++
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444455555555555555555554444
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.5e-08 Score=86.91 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=105.3
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+..+..+.++.+..|. +++ +++.+|.+++.+++|++|+..|++++++.|+ .+.++.
T Consensus 375 ~~~~~~~~F~~A~~ldp~-----------n~d-----vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~i 432 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPE-----------NPD-----VYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYI 432 (606)
T ss_pred ccHHHHHHHHHHHhcCCC-----------CCc-----hhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHH
Confidence 456666667777776665 333 7888999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.++.+.++++++++++..|+.+++- =|..+.+|...|.+...++++++|.++|++|++.-+
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999887 677888999999999999999999999999998643
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.89 E-value=1.4e-07 Score=81.62 Aligned_cols=94 Identities=24% Similarity=0.291 Sum_probs=52.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STE 213 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~~ 213 (245)
+..+|..+...|++++|..+++++++..+. ...++..+|.++...|++++|+..++++++. .+. ...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~ 250 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQ------DPEYLSE 250 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------ChhhHHH
Confidence 344556666666666666666666655444 3445555666666666666666666665544 221 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
++..++.+|...|++++|...++++++
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=3.1e-07 Score=74.07 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH
Q 025965 90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN--------QDLEKAFTEFKAALEL 161 (245)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~l 161 (245)
.......+.+.++..|.+.+...|. ++.. ..+++..|.+++.. |++++|+..++++++.
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~~~--~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFIRLHPN-----------HPDA--DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcC-----------CCch--HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 3333444677788888888877664 2221 23566778888876 7899999999999988
Q ss_pred HHhCCChHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH
Q 025965 162 AQNVKDPIEE-----------KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 230 (245)
Q Consensus 162 ~~~~~d~~~~-----------~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~ 230 (245)
.|+....... ......+|..+..+|++++|+..++++++... +.+..+.+++++|.+|..+|++++
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHH
Confidence 7764332211 11234788999999999999999999987733 345678899999999999999999
Q ss_pred HHHHHHHHHHHh
Q 025965 231 AARFYDKYISRL 242 (245)
Q Consensus 231 A~~~y~~al~~~ 242 (245)
|..+++.....+
T Consensus 222 A~~~~~~l~~~~ 233 (235)
T TIGR03302 222 AQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHhhC
Confidence 999988876654
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.88 E-value=3.4e-08 Score=91.26 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
..++..+|.++...|++++|+..+++++++.|. ...+..++|.++...|++++|+..|+++++. .|..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~ 351 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVT 351 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------Cccc
Confidence 456677899999999999999999999998887 6778889999999999999999999999887 6666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+..+|.++...|++++|...|+++++...
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 66777789999999999999999999988643
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=3.8e-08 Score=96.48 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=98.9
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH------
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------ 170 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~------ 170 (245)
+.+.++..+++++...|. ...++..+|.+|..+|++++|+.+|+++++..++......
T Consensus 284 ~~~~A~~~l~~aL~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPK----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 445566666666665443 1346777899999999999999999999998775433210
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 171 --EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 171 --~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.......+|..+...|++++|+..|+++++. +|....++..+|.+|...|++++|+++|+++++..
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1223456788999999999999999999998 77778899999999999999999999999999764
No 52
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-08 Score=85.76 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025965 93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 172 (245)
+-......++..+++++...|..-... ..--....+...-..|+-.+..|+|.+|.+.|..|+.+.|+ +....+
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk----~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~na 287 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSK----SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNA 287 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHH----hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhH
Confidence 333345556667888887766420000 00112234556667899999999999999999999999987 444567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..|.|.+.+..+.|+.++|+..++.++++ ++....++...|.||..+++|++|.++|+++++.-
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88999999999999999999999999999 89999999999999999999999999999998753
No 53
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.9e-08 Score=83.62 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--C-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--D-------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--d-------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
+...-..|+.|+..|+|..|..-|++|+....... + ......++.|++.++..+++|.+|+..+.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 33444679999999999999999999998776321 1 1113456889999999999999999999999999
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 203 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 203 ~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++++..+++..|.++..+|+|+.|+..|+++++.-.
T Consensus 287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999998653
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=4.5e-08 Score=90.12 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
..+....+.+..+.+++++|...++++++..++ ...+++.+|.++...|+|++|+..|++++.- .|+.
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~ 187 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEF 187 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCc
Confidence 345556688888999999999999999988888 8888889999999999999999999998774 6677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.++...|+.++|...|+++++...
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 88899999999999999999999999988653
No 55
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=2.8e-08 Score=74.41 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+-....+...+..|..++..|++++|...|+-...+.+. ......+||.++..+++|++|+..|..+..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---- 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---- 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 334556778888899999999999999999987766555 5667899999999999999999999999888
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+++.+...+..|.||..+|+.++|..+|..+++..
T Consensus 101 --~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 101 --LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred --ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 45556678899999999999999999999998743
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=9.3e-09 Score=90.88 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
.....+++.+|.+|..+++++.|.-+|++|+++.|. .......+|..+.+.|+.++|+..|++|+.+ +
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l------d 553 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRKDKALQLYEKAIHL------D 553 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc------C
Confidence 335678899999999999999999999999999988 7788888999999999999999999999888 6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..+.+.+..|.++..++++++|..-+++.-+..
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 7777777788888888888888887777665543
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=1.3e-07 Score=75.30 Aligned_cols=93 Identities=25% Similarity=0.292 Sum_probs=84.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
..|......|+|..|+..+.++.++.|+ ..++++.+|.+|.+.|++++|-..|.+++++ .++.+.+..
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p~~~n 172 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEPSIAN 172 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCchhhh
Confidence 3688999999999999999999999998 8999999999999999999999999999999 777788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 217 AIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
|+|..|.-.||++.|..++..+...
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999998887643
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=1.3e-08 Score=65.04 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
+.+|..+...|+|++|+..|+++++. .|....+++.+|.++..+|++++|..+|+++++...+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 35789999999999999999999887 7889999999999999999999999999999987654
No 59
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.84 E-value=1.6e-07 Score=81.20 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
....+..+|..|...|++++|...|+++++..+. ...++..++.++...|++++|++.++++++..... ....
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 178 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVE 178 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHH
Confidence 3445666777777778888887777777665433 45667777778888888888888887776542100 0112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+.++|.++...|++++|..+|+++++..
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 34456678888888888888888888887654
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.83 E-value=4.6e-08 Score=83.90 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+..++.......+.+.++..|.+++...+. ....++.+|.+|...|++++|+..+++++++.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 445556666666788888889888887664 2346778899999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
...+++.+|.++...|+|++|+..|++++++ .|....+...++.+...+
T Consensus 69 ------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 ------LAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999 777788888888886655
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=2.1e-08 Score=64.06 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=55.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
..|..++..|++++|+..|+++++..|. ...++..+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998887 8999999999999999999999999999988
No 62
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=1.4e-07 Score=90.15 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=82.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
++......|++++|+..|++++++.|+ ..++.++|.++.+.|++++|+..|++++.+ +|..+.++.+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~n 648 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAA 648 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 345555669999999999999987763 457889999999999999999999999999 8888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 218 IADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 218 la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|.++...|++++|+..|+++++...
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998654
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.78 E-value=1e-07 Score=93.55 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH------------------------------------HHHHHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------------------------------------EKKAAR 176 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~------------------------------------~~~a~~ 176 (245)
.++..+|.++...|++++|+.+|++++++.+....... ....+.
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 46677899999999999999999999987665221100 012234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+|..+...|++++|+..|+++++. .|..+.+++.+|.+|...|++++|...++++++..
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5677788899999999999999998 78888899999999999999999999999998754
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=1.6e-07 Score=86.59 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
..++..+|.+....|.+++|...++.+++++|+ ...+..+++.++.+.+++++|+..++++++. .|..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSSS 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCCC
Confidence 457778899999999999999999999999999 9999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+.+++.+|.+...+|++++|...|++++.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 99999999999999999999999999986
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.76 E-value=1.6e-07 Score=88.63 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
..++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|.+.+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAI------DPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555555555555443 33333344444444444444444444444443
No 66
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=1.1e-07 Score=76.50 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=92.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
.+..|.-++..|+|..|...|..-++.+|+ ......+++.||.+++.+|+|++|...|..+++- .++.+..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~---~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD---YPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh---CCCCCCChHH
Confidence 778899999999999999999999887765 5557889999999999999999999999997664 6667788899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.-+|.+...+|+.++|...|++.++.+.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999998774
No 67
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.73 E-value=9.2e-07 Score=63.58 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+.+..|..+...|+.++|+.+|+++++. .+ +......++.++|.++...|++++|+..+++++.- ..+++....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHH
Confidence 5678899999999999999999999874 22 23345678999999999999999999999998764 233344566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
....++.+....|+.++|...+-.++
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67778999999999999998876654
No 68
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.73 E-value=1.8e-07 Score=88.37 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.....+|.+|...|++++|+..|+++++..|+ ...++.++|.++...|+ .+|+.+++++++. .|..+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~------~~~~~ 837 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKL------APNIP 837 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh------CCCCc
Confidence 45566677777778888888888877776655 45556666666666666 6666666666665 44445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+.++|.+|...|++++|.++|+++++.
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55666666666667777777766666654
No 69
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=2.8e-07 Score=70.84 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
++..+-.-|+-++..|+|++|..-|..|+++.|.... .....+|.|.|.+...++.++.||..+.++|++ .|.
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pt 166 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPT 166 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------Cch
Confidence 3445556799999999999999999999999987554 446678899999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.-.++...|.+|.+...++.|++.|++.++..
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999988754
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.6e-07 Score=81.37 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+......|+.++..|+|..|+.+|.+|+...|+ .+..|.|.+.+|...|.+..|+...++++++ +|..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~ 425 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNF 425 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchH
Confidence 444455699999999999999999999999888 8999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+|..-|.++..+.+|++|.+.|+++++.-
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998753
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=9.4e-08 Score=82.14 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
...+..+-..|+-++.+|+|++|+.+|.+|+++.++ .+..|-|++.+|...|++++-++...+++++ +
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl------~ 179 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALEL------N 179 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc------C
Confidence 445667778999999999999999999999999998 6888999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y 235 (245)
|....+++..+.++..+|++++|....
T Consensus 180 P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 180 PDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 999999999999999999999998755
No 72
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.6e-07 Score=75.34 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCC
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d 207 (245)
.+..+..+|.+|..+|+++.|...|.+|+++.++ ....+.++|.+++.+.+ ..++...+++++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------ 222 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKARALLRQALAL------ 222 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------
Confidence 3446777899999999999999999999999999 88889999999877654 57899999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
++....+...+|..++..|+|.+|...+++.++....
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999987643
No 73
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.68 E-value=1.2e-06 Score=62.90 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=86.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 215 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~ 215 (245)
-..|......|+.+.|++.|.+++.+.|. .+.+|+|.+..++-+|+.++|++.++++++++-.. ......++
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~ 118 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAF 118 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHH
Confidence 34688888999999999999999999998 89999999999999999999999999999984311 22456788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 216 GAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 216 ~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...|.+|..+|+-+.|...|+.+-+.
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 99999999999999999999988654
No 74
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.4e-07 Score=76.61 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965 80 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 159 (245)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 159 (245)
....+..+.+..+.....+..+...|.++++....-......+.. .-......++++++.++..+++|..|+....++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~-~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQK-KAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHH-HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444567777888888888999999999998886532111111100 1112345678899999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 025965 160 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE-RAARFYDKY 238 (245)
Q Consensus 160 ~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~-~A~~~y~~a 238 (245)
++.++ ...+++..|.++..+|+|+.|+..|++++++ .|.+-.+...+..+.....++. +..+.|.+.
T Consensus 285 e~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 285 ELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred hcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999 7877778888887776655554 447777777
Q ss_pred HHHh
Q 025965 239 ISRL 242 (245)
Q Consensus 239 l~~~ 242 (245)
+...
T Consensus 353 F~k~ 356 (397)
T KOG0543|consen 353 FAKL 356 (397)
T ss_pred hhcc
Confidence 6644
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-07 Score=82.02 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=104.3
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
...++++..|..+-...+.- -.-.+++|.-|...+++..|..+|.+|+.++|. .+..+
T Consensus 360 ~EhdQAmaaY~tAarl~~G~----------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~ 417 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGC----------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVL 417 (611)
T ss_pred chHHHHHHHHHHHHHhccCC----------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhh
Confidence 35577777777777666531 113556899999999999999999999999999 88899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
..+|.+.+..+.|.+|..+|++++...+...... -......|+|.+|.+++.+++|+.+|++++...+.
T Consensus 418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999997666554333 24456899999999999999999999999986543
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.65 E-value=1.1e-07 Score=78.82 Aligned_cols=98 Identities=24% Similarity=0.369 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
....+...|.++...|++++|+..|++++++.|+ ...+...++..+...|+++++.+.++...+.. +.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~ 212 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD 212 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence 4556777899999999999999999999999987 44455555555555555555444444433331 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+..+..+|.+|..+|++++|..+|++++.
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccccc
Confidence 222334445555555555555555555544
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=6.8e-07 Score=71.30 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC
Q 025965 88 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD 167 (245)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d 167 (245)
+++..-...++..++..+.++....|. +...+..+|.+|.+.|+++.|...|.+++++.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~----------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--- 166 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT----------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN--- 166 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC----------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---
Confidence 444444445667777777777766553 2336667799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965 168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y 235 (245)
.....+|+|.++.-.||++.|..++..+... .+....+..|++.+-...|+++.|...-
T Consensus 167 ---~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 167 ---EPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ---CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8999999999999999999999999998655 5556778999999999999999998654
No 78
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.62 E-value=1.3e-06 Score=82.39 Aligned_cols=105 Identities=13% Similarity=-0.002 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
+.....+....|.++...|++++|++.+++++...|. ...++..+|.++...|++++|+..+++++.+
T Consensus 355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------ 422 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASVLQARGWPRAAENELKKAEVL------ 422 (765)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------
Confidence 3334556677899999999999999999999999887 6789999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
.|.....+..+|.++...|++++|...++++++...+
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 7888889999999999999999999999999987654
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=3.2e-07 Score=78.42 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
.........|.++..+|++++|...+++++++.|+ ...++..+|.++...|++++|+.++.++++.... +..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~ 183 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSM 183 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccc
Confidence 34556667799999999999999999999999887 5778899999999999999999999999887332 112
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 210 GSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.....+..+|.++...|++++|...|++++.
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2345677899999999999999999999863
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.61 E-value=1.9e-07 Score=77.38 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=77.2
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+...++..|++++...|. . ......+++.+...|+++++.+.++......+. ....+.
T Consensus 161 ~~~~A~~~~~~al~~~P~--------------~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~ 218 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD--------------D--PDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWD 218 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCH
T ss_pred CHHHHHHHHHHHHHcCCC--------------C--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHH
Confidence 667777888888887664 1 224555688899999999988888877776655 444566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+|.++...|++++|+.+++++++. .|..+..+.++|.++...|+.++|...+.+++...
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHhccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999988 88889999999999999999999999999988754
No 81
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.6e-06 Score=66.74 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025965 78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 157 (245)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 157 (245)
+..+.+++...+..+...+.++.+...|+.++...+. .+...+...+.+.|.+...++..+.|+....+
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~-----------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS-----------TSTEERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc-----------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 3455568888888888888999999999999999886 45566777888999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025965 158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 229 (245)
Q Consensus 158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~ 229 (245)
|+++.+. ...++...+.+|-.+..|++|++.|++.++. +|..-.+...+.++--...+..
T Consensus 160 aiel~pt------y~kAl~RRAeayek~ek~eealeDyKki~E~------dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 160 AIELNPT------YEKALERRAEAYEKMEKYEEALEDYKKILES------DPSRREAREAIARLPPKINERN 219 (271)
T ss_pred hHhcCch------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CcchHHHHHHHHhcCHHHHHHH
Confidence 9999998 8888889999999999999999999999988 7877777777766655444433
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.58 E-value=1.2e-06 Score=65.46 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 025965 79 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 158 (245)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 158 (245)
.+.++.+..-...+...++.+.+..-|+....+.+. ...-++++|.++..+|+|++|++.|.+|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------SFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566666666677777777777777766665553 3557888999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 159 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 159 l~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
..+.++ .+..+.++|.++...|+.+.|.+.|+.++..+.
T Consensus 96 ~~L~~d------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 96 AQIKID------APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999998 899999999999999999999999999999973
No 83
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=2.3e-06 Score=72.15 Aligned_cols=98 Identities=10% Similarity=0.064 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCc
Q 025965 132 LLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~--~~Ai~~~~~al~~~~~~~d~ 208 (245)
..++..+|.++..+| ++++++..+.++++..++ ...++.+.+.+....|+. ++++.++.++++. +
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~------d 138 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSL------D 138 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh------C
Confidence 335556677777666 467777777777776666 566667777777666653 5667777777776 6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+.+..++.+.|.++...|++++|+++++++|+.
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777764
No 84
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.55 E-value=4.6e-06 Score=67.72 Aligned_cols=144 Identities=12% Similarity=0.036 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...........+.+.++..|.+.+...|. . .....+.+.+|.+|+..++|++|+..+++.++.+|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-----------s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF-----------G--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------C--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444455555556777888888888887764 2 23344577899999999999999999999999888
Q ss_pred hCCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHcCCcc-----------hHHHH
Q 025965 164 NVKDPIEEKKAARGLGASLQRQG---------------K---YREAIKYHSMVLQISEREGEYS-----------GSTEA 214 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g---------------~---~~~Ai~~~~~al~~~~~~~d~~-----------~~~~a 214 (245)
+..+ ...+++.+|.++...+ | ..+|+..+++.++.+.+....+ ..+.-
T Consensus 101 ~~~~---~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 101 THPN---IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred CCCc---hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 7544 5777888887764443 1 3567888888877755332111 12223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
-..+|..|.+.|.|..|+..++..++.++
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp 206 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYP 206 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence 44689999999999999999999998764
No 85
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.55 E-value=2.5e-06 Score=71.19 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-Ccc--
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYS-- 209 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~-d~~-- 209 (245)
.....+|..+.-++.|++++++|++|+.++.+++|+......+..+|..+....|+++|+.+..+|.++....+ ++.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 45566899999999999999999999999999999999999999999999999999999999999999988766 332
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 210 -GSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 210 -~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+++.++.++..+|..-.|.++.+++.++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345568889999999999999999999998754
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.54 E-value=1.1e-06 Score=82.71 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
++..+|..+...|++++|+..++++++..|. ...+..++|.++...|++++|+..++++++. .|....
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------~P~~~~ 118 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSG------APDKAN 118 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH
Confidence 4566677888888888888888888877666 5566677788888888888888888887777 666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+..+|.++...|++++|...++++++...
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77778888888888888888888777543
No 87
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.54 E-value=2.4e-06 Score=67.54 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
....+..|..++..|+|.+|+..|++....+|. +.....+...+|.+++..|+|++|+..+++.++.+ .+++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~~~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNSPKA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-TTH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence 447788899999999999999999998887665 44567788999999999999999999999988774 446667
Q ss_pred HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhhc
Q 025965 212 TEAYGAIADCYTELG-----------DLERAARFYDKYISRLES 244 (245)
Q Consensus 212 ~~a~~~la~~y~~~g-----------~~~~A~~~y~~al~~~~~ 244 (245)
..+++.+|.++.... ...+|...++..++.+.+
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 889999999976543 345788888888887654
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=1.8e-07 Score=79.92 Aligned_cols=105 Identities=22% Similarity=0.220 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
+...+.+..+.|++-+.+|++++|.+.|++|+.-... -.++++|+|..+-.+|+.++|++.|-+...+
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas------c~ealfniglt~e~~~~ldeald~f~klh~i------ 553 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS------CTEALFNIGLTAEALGNLDEALDCFLKLHAI------ 553 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------
Confidence 3445567778899999999999999999999875555 6788999999999999999999999998777
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
-.+.+..+..++.+|..+.+..+|+++|.++.....+
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 5567888999999999999999999999998776554
No 89
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=4.8e-07 Score=77.99 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---ARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a---~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
....++++|..|+..|+|++|+..|++|+++ ......+ ++|+|.+|..+|++++|+..+++|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555555555555555555555554442 2222212 455555555555555555555555443
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.51 E-value=3.6e-06 Score=68.35 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
..+..|..++..|+|++|+..|++.++.+|. +.....+...+|.++++.++|++|+..+++.++. ..+++....
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~---~P~~~~~~~ 107 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CcCCCchHH
Confidence 4667799999999999999999999887664 4556677899999999999999999999999888 445677888
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHhhc
Q 025965 214 AYGAIADCYTELG---------------D---LERAARFYDKYISRLES 244 (245)
Q Consensus 214 a~~~la~~y~~~g---------------~---~~~A~~~y~~al~~~~~ 244 (245)
+++.+|.++..++ | ..+|.+.++..++.+.+
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence 9999999875554 2 24677888888877653
No 91
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.50 E-value=5.6e-06 Score=60.78 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
..++..|...+..|+|++|++.++....-+| -......+...+|.+|+..++|++|+..+++-|++ +..++...
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL---hP~hp~vd 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL---HPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCCCcc
Confidence 3667789999999999999999998766444 34556688899999999999999999999999988 44566788
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHhhc
Q 025965 213 EAYGAIADCYTELGD---------------LERAARFYDKYISRLES 244 (245)
Q Consensus 213 ~a~~~la~~y~~~g~---------------~~~A~~~y~~al~~~~~ 244 (245)
.+++..|.++..+.+ ..+|...+++.++.+.+
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999999999877 78999999998887754
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1e-06 Score=69.35 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HH
Q 025965 145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YT 223 (245)
Q Consensus 145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~-y~ 223 (245)
.++.++++..++++++..|+ ...++..+|.++...|++++|+..|++++++ .|..+..+.++|.+ |.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Confidence 46778999999999999988 8889999999999999999999999999999 88889999999997 47
Q ss_pred HcCC--HHHHHHHHHHHHHHhh
Q 025965 224 ELGD--LERAARFYDKYISRLE 243 (245)
Q Consensus 224 ~~g~--~~~A~~~y~~al~~~~ 243 (245)
..|+ +++|.+.++++++.-.
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCC
Confidence 7787 5999999999998644
No 93
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=7.3e-07 Score=65.39 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 025965 153 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 232 (245)
Q Consensus 153 ~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~ 232 (245)
+.++++++..|+ ...+...+|..+...|++++|+..+++++.. .|....++.++|.+|...|++++|.
T Consensus 4 ~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSE------QLEQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChh------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 357778777776 6778899999999999999999999999888 7778899999999999999999999
Q ss_pred HHHHHHHHHhh
Q 025965 233 RFYDKYISRLE 243 (245)
Q Consensus 233 ~~y~~al~~~~ 243 (245)
.+++++++...
T Consensus 72 ~~~~~~~~~~p 82 (135)
T TIGR02552 72 DAYALAAALDP 82 (135)
T ss_pred HHHHHHHhcCC
Confidence 99999987643
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=1.5e-06 Score=81.38 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
...++..|.+++..++++++.-. .++...+. +++......+++++|.+|-++|++++|...|+++
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44666778888888887777654 44433332 2223335578999999999999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+++ +|..+.+++++|..|... ++++|.+++.+|+.++
T Consensus 143 L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 143 VKA------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred Hhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 999 799999999999999999 9999999999999865
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1e-06 Score=81.20 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+++...+|.++...|++.+|...|.+..+-... ...++.|+|++|..+|+|..|+..|+.+++.+- ..+
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~----~~~ 714 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY----KKN 714 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC
Confidence 5677888999999999999999999998876665 567789999999999999999999999988765 334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....+..||++++..|++.+|.++..+|+....
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 567889999999999999999999999987654
No 96
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.44 E-value=6.2e-06 Score=63.34 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.++......+++++|..+...|++++|+.+|+++++... +.+....++.++|.+|...|++++|..+|+++++..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445555778899999999999999999999999998733 223346789999999999999999999999999864
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.44 E-value=1.9e-05 Score=69.15 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.++..|.++..+|+++.|..+++++.+..+. .. ..+....+.++...|++++|...+++.++. .|..+.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~ 188 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN--ILVEIARTRILLAQNELHAARHGVDKLLEM------APRHKE 188 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH
Confidence 4556799999999999999999999876554 11 123334588999999999999999999888 788888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++..++.+|...||+++|.+.+.+..+.
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999888754
No 98
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=7e-07 Score=73.53 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+.++|+|.++.-.++++-++..|.+|+..+.+ +...++.|+|+|.+....||+.-|..+++-++.
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 444556666666666666666666666665442 223455666666666666666666666665553
No 99
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.43 E-value=1.2e-05 Score=61.55 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.....+.......+.+.++..+.+++...+. ......++.++|.++...|++++|+..+++++++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3444444444555777888888888775432 122345788899999999999999999999999876
Q ss_pred hCCChHHHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHc
Q 025965 164 NVKDPIEEKKAARGLGASLQ-------RQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~-------~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
. ....+.++|.++. ..|++++|+..+.+++..+++.
T Consensus 104 ~------~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 104 F------LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred C------cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 6 3344455555555 9999999999999988887764
No 100
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=2.2e-05 Score=64.76 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
..-+..+..++..+....+.+.|...+.+|++..++ -..+-.-+|.+....|+|+.|++.++.+++- |.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~ 245 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQ-----NP 245 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHh-----Ch
Confidence 345666678899999999999999999999999888 7788888999999999999999999998876 33
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...+.+...+-.||..+|+.++...+..++.+..
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3467788889999999999999999999988754
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=1.7e-05 Score=76.18 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-- 208 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~-- 208 (245)
...+...+|.++...|++++|...+++++......++......++.++|.++...|++++|...+.+++.+....+..
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 445666789999999999999999999999999888888888889999999999999999999999999998876532
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.....+..+|.++...|++++|...+.+++....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 33344567889999999999999999999887643
No 102
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=3e-05 Score=61.21 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965 83 QRVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 161 (245)
Q Consensus 83 ~~l~~~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l 161 (245)
..+..+........ ...++-..|.++-+....+ ++...-+..+...+.+|. ..++.+|+...++++++
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~----------~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKA----------GSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc----------CCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHH
Confidence 34444444444433 4444555666666665442 444444555555555555 46999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 162 AQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 162 ~~~~~d~~~~~~a~~~lg~~~~~~-g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+.+.+.....+.-+..+|.+|-.- .++++||.+|+++-+.++..........++.-.|..-..+++|.+|+..|++...
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888889999999664 8999999999999999887665555666778888888899999999999988764
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.41 E-value=1.8e-06 Score=56.30 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=46.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
..+|...+++++|...+++++.+.|. ....+...|.++..+|++++|+..++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888777 7777888888888888888888888888877
No 104
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=0.00011 Score=56.62 Aligned_cols=102 Identities=25% Similarity=0.205 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
-....+.++..+...+++++|...++.++. ..+|......+-..++.+...+|.+++|+..+... .++..
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w 157 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESW 157 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccH
Confidence 445667789999999999999999999876 34566677778889999999999999999877663 22334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+..-...|+++..+|+.++|...|+++++..
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45556778999999999999999999999874
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=9.3e-07 Score=56.80 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=47.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965 143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 219 (245)
Q Consensus 143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la 219 (245)
...|++++|+..|+++++..|+ ...+...+|.++...|++++|...+++++.. .|..+..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHh
Confidence 4567888888888888887777 6777778888888888888888888887666 555455544444
No 106
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.39 E-value=1.5e-06 Score=56.65 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=55.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 179 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 179 g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
..++.+.++|++|++++++++.+ +|..+..+...|.+|..+|++++|.+.++++++..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999 8888999999999999999999999999999987543
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=2.8e-06 Score=70.48 Aligned_cols=102 Identities=24% Similarity=0.264 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
.+.++.-.+.+|..++..|++..|+..|-.|++..|+ ...+++..|.+|..+|+-.-|+..+.++|++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------ 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLEL------ 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhc------
Confidence 3446667888999999999999999999999999998 8899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.|+...+....|.+..++|++++|...|++.++.
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999874
No 108
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=7.4e-06 Score=62.48 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=101.7
Q ss_pred chhHHHHHHHHHHHHhhchhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHH
Q 025965 55 FNMPLLLFVALIGATVGGLLARQRRGELQ-RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELL 133 (245)
Q Consensus 55 ~~~~~~~~i~l~g~~~~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 133 (245)
+.+.+++...++|+++.+...--.....+ .-...+....+.++.+.......+.++.++. ..
T Consensus 28 YWlfIif~Fp~iG~VaYfvav~LPEl~~~R~a~~~~~a~~q~ldP~R~~Rea~~~~~~ApT-----------------vq 90 (251)
T COG4700 28 YWLFIIFCFPVIGCVAYFVAVMLPELGADRHAHTLLMALQQKLDPERHLREATEELAIAPT-----------------VQ 90 (251)
T ss_pred HHHHHHHHhcccchhhHHHHHhhhHhcccchhHHHHHHHHHhcChhHHHHHHHHHHhhchh-----------------HH
Confidence 44555556666777655433221111111 1112223333344455555555555555553 22
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
-.+.+|......|++.+|..+|++++. +-.......+.+++......+++..|...+++..+... ....++
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p----a~r~pd 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP----AFRSPD 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----ccCCCC
Confidence 345678888888999999999998865 11112455677888888888999988888888766621 123455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+..+|++|...|.+.+|...++.+++.+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 677788889899998888888888887653
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-06 Score=76.13 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=87.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
..|+..+..|+|+.|+.+|..|+.+.|. ....|.|...+|..+|+|++|+..-.+..++ .|..+..|.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy~ 74 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGYS 74 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHHH
Confidence 4588999999999999999999999887 6667888999999999999999999999999 999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 217 AIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..|....-+|+|++|...|.+.++.-
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d 100 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKD 100 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99999999999999999999998754
No 110
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.39 E-value=2.3e-05 Score=61.87 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+.+...+......++...++..+.+.+...|. .+. ...+.+.+|.+++..|++++|+..+++.++.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----------s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----------SPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----------STT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------ChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35666677777777888888888888888775 332 23366778999999999999999999999988
Q ss_pred HhCCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCcc-----------hHHHHHHHHHH
Q 025965 163 QNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYS-----------GSTEAYGAIAD 220 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~-----------g~~~~Ai~~~~~al~~~~~~~d~~-----------~~~~a~~~la~ 220 (245)
|+... ...+++.+|.++..+ +...+|+..|+..++.+......+ ..+.--..+|.
T Consensus 73 P~~~~---~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 73 PNSPK---ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp TT-TT---HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcc---hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87443 567778888876554 334578888888887755432211 12233455899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhh
Q 025965 221 CYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 221 ~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.|.+.|.+..|...++.+++.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHcccHHHHHHHHHHHHHHCC
Confidence 99999999999999999998765
No 111
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.38 E-value=2.7e-06 Score=57.21 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
....+.+|.+|+..|+|++|+..+++ .+..+. ...+...+|.++..+|+|++|++.++++
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 33566689999999999999999999 666666 6677778899999999999999999875
No 112
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.36 E-value=8.6e-05 Score=52.39 Aligned_cols=111 Identities=20% Similarity=0.208 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-----h-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----P-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-----~-~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
..+.-|.-....|-|++|...+++|+++.+++.. + -..+.++..|+.++...|+|++++..-.+++.++.+.|+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE 90 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE 90 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence 3344566667779999999999999999988753 2 236778889999999999999999999999999998764
Q ss_pred cc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 208 YS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 208 ~~-----~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
-. ....+.++.|..+..+|..++|...|+++-+.+.+
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 22 23446788999999999999999999999887653
No 113
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.35 E-value=1.1e-06 Score=72.82 Aligned_cols=94 Identities=12% Similarity=0.166 Sum_probs=87.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 215 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~ 215 (245)
-..|+-|+.+|+|++|++.|.+++.+++. ....+.|.+.+|.+++.+..|...+..|+.+ +.....+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHH
Confidence 46799999999999999999999999986 6777889999999999999999999999999 77888999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 216 GAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 216 ~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...|.+-..+|...+|.+.|+.++++
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 99999999999999999999999875
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.34 E-value=5e-06 Score=76.86 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
....+.+++++|..|..+|+|++|..+|.+++...++. ....+.++|..+...|++++|+..|+++++.
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~------ 371 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ------ 371 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHh------
Confidence 34566778888999999999999999999888766651 2566788899999999999999999988877
Q ss_pred cchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHh
Q 025965 208 YSGSTEAYGAIADCYTELG----DLERAARFYDKYISRL 242 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g----~~~~A~~~y~~al~~~ 242 (245)
.|+...+...+|.+|...+ ..++|..+..+++...
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7777777777888887765 4566666666666543
No 115
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.32 E-value=5.7e-05 Score=65.94 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=77.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a-~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
++..+.....+|+++.|..+++++.+..++ ...+ ....+..+...|++++|+..+++..+. .|..+.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~ 188 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN------DQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPE 188 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHH
Confidence 444577779999999999999999876554 2222 223488999999999999999999888 788889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
++..++.+|...||+++|.+.+.+..+
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988877664
No 116
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=3.5e-05 Score=63.56 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..++..|+.++..+....+.+.|+..+.+|++. +|....+-..+|+++...|+|++|.+.++.+++.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 346677888999998889999999999999888 7878888888999999999999999999888764
No 117
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=3.4e-06 Score=69.60 Aligned_cols=100 Identities=20% Similarity=0.190 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+.++|.+.+..+++|-++..|++|+..+.. +...+..++|+|.+....||+.-|-..|+-++.- ++....
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~e 430 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGE 430 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHH
Confidence 4567899999999999999999999986653 4446788999999999999999999999999876 788899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+++|+|.+-...|+.++|..+++.|-+..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887653
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=1.4e-06 Score=55.95 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 183 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 183 ~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...|+|++|+..|++++.. .|....++..+|.+|...|++++|...+++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5789999999999999998 888899999999999999999999999998876543
No 119
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=9.4e-05 Score=58.85 Aligned_cols=119 Identities=15% Similarity=0.079 Sum_probs=100.0
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
.|....+..+...+..|...++|++|...+.+|.+.+++.......+.++...|........+.|+..+|++|..++.+.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34444555666778889999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~~ 245 (245)
|....-+.++..-|.+.. .-+.++|++.|++++.+++++
T Consensus 105 GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred CCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhcc
Confidence 976666666666666555 458999999999999988753
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=1.3e-05 Score=68.58 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=75.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l 218 (245)
+..+...|++..+.....++++. ..........+...+|.++..+|++++|+..+++++++ .|....++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHH
Confidence 55566666665555555555543 22333335667778999999999999999999999998 67778889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 219 ADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 219 a~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
|.+|...|++++|..+++++++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhcc
Confidence 999999999999999999998754
No 121
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.26 E-value=6.6e-06 Score=74.38 Aligned_cols=100 Identities=24% Similarity=0.228 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcCCcc
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEYS 209 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~--~~~~al~~~~~~~d~~ 209 (245)
...++..|..+...|+..+|...|..|+.+.|+ ...+...+|.++.+.|+..-|.. ....++++ +|
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------dp 751 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRL------DP 751 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------CC
Confidence 445677889999999999999999999999998 88888999999999999888888 99999999 99
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+..+|+++|.++..+||.++|.++|+.|++.-+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998643
No 122
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=2.1e-05 Score=67.65 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=100.0
Q ss_pred HHHHHHHH-HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC
Q 025965 89 LRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD 167 (245)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d 167 (245)
+..++..+ ...++|+.|.++.+..|. +|. .+..+|..|-+.|+-..|..++-...+..|.
T Consensus 564 ianiye~led~aqaie~~~q~~slip~-----------dp~-----ilskl~dlydqegdksqafq~~ydsyryfp~--- 624 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPN-----------DPA-----ILSKLADLYDQEGDKSQAFQCHYDSYRYFPC--- 624 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCC-----------CHH-----HHHHHHHHhhcccchhhhhhhhhhcccccCc---
Confidence 44444444 556777777777777664 332 4556789999999999999888777778777
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
..+....+|..|....-+++||.||+++--+ .|....-...++.|+...|+|++|.+.|+..-..+.+
T Consensus 625 ---nie~iewl~ayyidtqf~ekai~y~ekaali------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 625 ---NIETIEWLAAYYIDTQFSEKAINYFEKAALI------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ---chHHHHHHHHHHHhhHHHHHHHHHHHHHHhc------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 6777778888888888899999999998777 7777776777899999999999999999887776654
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=0.00012 Score=54.58 Aligned_cols=100 Identities=17% Similarity=0.053 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+...+.........++...+...+++..+ +.+++.....+...+|.++...|++++|+..|++++.. ..++...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~ 84 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHH
Confidence 33444445555568899888877777555 55566677888999999999999999999999999875 3444556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
..+...+|.++...|++++|...++.
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77899999999999999999999865
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.25 E-value=1e-05 Score=57.48 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025965 90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 169 (245)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 169 (245)
.......+.+.++..+.+.+...+. . .....+.+.+|.++...|++++|+..+++++...|.. .
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~-----------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~ 73 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPK-----------S--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---P 73 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-----------c--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---C
Confidence 3333344556666666666654432 1 1123467778999999999999999999999876542 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
....++..+|.++...|++++|+.+++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 23567889999999999999999999999888
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.24 E-value=2.7e-06 Score=73.40 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...+++|+|.++..+|+|++|+..|++++++.....+ ...+|+|+|.+|..+|++++|+.++++|++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae---A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE---AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999888432 2357999999999999999999999999986
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=4.7e-05 Score=65.81 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
....++.++...++..+|+....+++...|. ....+...+..+...++|+.|+...+++.+. .|....
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~ 269 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFE 269 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHH
Confidence 3445688888999999999999999976665 4777888899999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYD 236 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~ 236 (245)
+|+.++.+|..+||+++|....+
T Consensus 270 ~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 270 TWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999987665
No 127
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=6.4e-05 Score=63.49 Aligned_cols=100 Identities=13% Similarity=0.032 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965 132 LLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~--~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
..++..++.+....|+. ++++.+++++++..++ ...++.+.|.+....|+|++|++++.++|+. ++
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~ 173 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DV 173 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CC
Confidence 33577778888888874 6789999999999988 8899999999999999999999999999999 88
Q ss_pred hHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHhh
Q 025965 210 GSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~---g~~----~~A~~~y~~al~~~~ 243 (245)
....++++.+.+.... |.+ +++.++..++|....
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P 214 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP 214 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC
Confidence 8899999999998776 333 578888889887653
No 128
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.22 E-value=2.1e-05 Score=74.14 Aligned_cols=100 Identities=7% Similarity=0.049 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
........|..|..+|++++|++.|+++++..|+ ...++..++..+...+++++|+..++++.+. ++.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~ 168 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAER------DPT 168 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc------Ccc
Confidence 3445666688999999999999999999998887 6677778889999999999999999998776 554
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
... +..++.++...++..+|++.|+++++...
T Consensus 169 ~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 169 VQN-YMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred hHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 332 34455556567777779999999998754
No 129
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.22 E-value=1.8e-05 Score=72.71 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+...+..|+..+..|++++|...+.+++...+. ...++..||.+|..+||.++++.....|-.+ +|.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~ 205 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPK 205 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCC
Confidence 4667788899999999999999999999999998 8999999999999999999999999888877 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...-|..++....++|.+++|.-+|.+||+.-.
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p 238 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANP 238 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 778888999999999999999999999998643
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=2.8e-05 Score=67.18 Aligned_cols=96 Identities=23% Similarity=0.230 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
.+.....+.++...++.++|.+.+++++.+.|. ......++|.++...|++++|+..++..+.- +|..
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~------~p~d 407 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFN------DPED 407 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCC
Confidence 344556799999999999999999999999988 6777889999999999999999999998665 7777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
+..|..+|.+|..+|+..+|...+.+..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888777666555443
No 131
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.21 E-value=3.5e-05 Score=70.87 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
++..+..+.......++.+.+.......|...|. ...++..+|.+|-.+|+.+++......|--
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----------------chhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4556666666666667778888888888887665 244778889999999999999999888777
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+.|+ ...-+..++.....+|++++|.-+|.+||+. .|......+..+.+|.+.|++..|...|.+.++
T Consensus 202 L~p~------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 202 LNPK------DYELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred cCCC------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 6665 4466677888899999999999999999999 888888999999999999999999999999887
Q ss_pred Hhh
Q 025965 241 RLE 243 (245)
Q Consensus 241 ~~~ 243 (245)
...
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 653
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.20 E-value=0.00015 Score=60.43 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc------------------cCCCccccccCChHHHHHHHHHHH
Q 025965 78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG------------------SRIPEDEVIVDPKKEELLSRLKTG 139 (245)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~g 139 (245)
.+.++++..+.+.++....+...++..|..+++..|.. ..+........-.+.-+.+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34555666666666666666666666666666554431 111111112223334455667789
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCChH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 140 KNFLRNQDLEKAFTEFKAALELAQNVKDPI---------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~---------~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.++..+|+++.|...|...+...++.+... ...+.+......+...||+..|+++..+.|++ .|.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~W 187 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI------QPW 187 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc------Ccc
Confidence 999999999999999999887665422111 12233445556677788899999998888888 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+..+...+.||...|+..+|+...+.+-..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 8888888999999999999999888777554
No 133
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=8.2e-06 Score=71.64 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=87.3
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
.++.+++.|+.++..-|. ....+..+|-..-.-.+..+|+..|.+|+++-|. ..++.+
T Consensus 445 efdraiDcf~~AL~v~Pn----------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~Ry 502 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN----------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVRY 502 (579)
T ss_pred HHHHHHHHHHHHHhcCCc----------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeeeh
Confidence 566666777777665543 4557888899999999999999999999999999 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---cc-hHHHHHHHHHHHHHHcCCHHHHHH
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGE---YS-GSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d---~~-~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
|+|.++..+|.|++|+++|-.||.+-++... .+ ..-..+..|=.+....+..|-+..
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999999999877322 11 112344444455555555554433
No 134
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.9e-05 Score=65.18 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+.....+.-+-.-|+-|+..++|..|...|.+++. .+..|+...+..|.|.+.+....|+|..|+..+.+|+.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 44444666666789999999999999999999865 688999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+|....+++.=|.|+..+..++.|..+++..+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999988877654
No 135
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.18 E-value=0.00013 Score=70.23 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=94.2
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~--~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
++..........+|.++...|++++|...+++++++....+.. ......+..+|.++...|++++|...+.+++.+.+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 3444456677788999999999999999999999998875432 22334466789999999999999999999999877
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+ ......++..+|.++...|++++|...+.++....
T Consensus 605 ~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 605 NYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred ccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 554 33456678889999999999999999999987754
No 136
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=7.6e-05 Score=58.97 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+..-|+.|...++++.|-..|.++-++.-..++....+.+|...+.+|.+ +++.+|+..++++++++...|.-..-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455668888888999999999999999998888877788888888877755 59999999999999999988866566
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc
Q 025965 212 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES 244 (245)
Q Consensus 212 ~~a~~~la~~y~~~-g~~~~A~~~y~~al~~~~~ 244 (245)
+.-+..||..|..- .++++|+.+|+++-+.+..
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 67788899999854 9999999999999887753
No 137
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.17 E-value=3e-05 Score=67.94 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=72.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHcCCcchHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK--KAARGLGASLQRQGKYREAIKYHSM--VLQISEREGEYSGSTEA 214 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~--~a~~~lg~~~~~~g~~~~Ai~~~~~--al~~~~~~~d~~~~~~a 214 (245)
.......++.+.+....+++++..|+ .. ..+..+|.++.+.|+|++|.++|++ +++. .|+...
T Consensus 306 ~~~~l~~~~~~~~~~~~e~~lk~~p~------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~------~p~~~~- 372 (409)
T TIGR00540 306 PIPRLKPEDNEKLEKLIEKQAKNVDD------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE------QLDAND- 372 (409)
T ss_pred HhhhcCCCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc------CCCHHH-
Confidence 34444457788888888888877666 55 6778899999999999999999995 5554 555444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..+|.++..+|+.++|.++|++++...
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5589999999999999999999998754
No 138
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.17 E-value=6e-05 Score=51.86 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=69.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965 142 FLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218 (245)
Q Consensus 142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~---~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l 218 (245)
....|+|..|.+.+.+..+......... ....+..++|......|++++|+..++++++++++.+|......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4567999999999999999888766655 5677889999999999999999999999999999999988877777666
Q ss_pred HHHH
Q 025965 219 ADCY 222 (245)
Q Consensus 219 a~~y 222 (245)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6543
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=1.2e-05 Score=53.61 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.++|..+..+|++++|+..++++++. .+....++..+|.++...|++++|.++++++++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999887 555567899999999999999999999999987543
No 140
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.13 E-value=5.8e-05 Score=65.87 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=74.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965 144 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 223 (245)
Q Consensus 144 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~ 223 (245)
..+++++++...++.++..|+ ....+..+|..+...+++++|.++|+++++. .|... .+..++.++.
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------~P~~~-~~~~La~~~~ 372 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGD------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------RPDAY-DYAWLADALD 372 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHH-HHHHHHHHHH
Confidence 447888888888887777776 6777889999999999999999999999988 66654 4668999999
Q ss_pred HcCCHHHHHHHHHHHHHHh
Q 025965 224 ELGDLERAARFYDKYISRL 242 (245)
Q Consensus 224 ~~g~~~~A~~~y~~al~~~ 242 (245)
..|+.++|.++|++++...
T Consensus 373 ~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HcCCHHHHHHHHHHHHhhh
Confidence 9999999999999998765
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.12 E-value=5.7e-05 Score=61.96 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=73.6
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
.++..++..|...+...|. .+ ....+++++|.+|+..|++++|+..|+++++.+|+ ......++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~-----------s~--~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---s~~~~dAl 220 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPD-----------ST--YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---SPKAADAM 220 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC-----------Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhHHH
Confidence 3566777777777777764 11 12346788999999999999999999999887664 45577889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 176 RGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
..+|.++..+|++++|...|+++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999887
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=6.4e-05 Score=67.52 Aligned_cols=64 Identities=19% Similarity=0.130 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..++.-+|......|++++|...+++|+.+ .++ +.+|..+|.++...|++++|.+.|++|+..-
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 466777888888999999999999999999 664 6799999999999999999999999998753
No 143
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.05 E-value=0.00025 Score=51.15 Aligned_cols=100 Identities=18% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+.-++......++-..+++.|.+++...|. .+.++++.+..+..+|+.++|++..++|++++.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 3444555666666788899999999999876 456888999999999999999999999999875
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.- +.....++...|.+|+.+|+-+.|-..|+.+-++
T Consensus 109 ~~--trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 109 DQ--TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred cc--chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 43 4446778899999999999999999999988765
No 144
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.7e-05 Score=62.67 Aligned_cols=97 Identities=9% Similarity=0.056 Sum_probs=89.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
+...|+.++....|+.|+..|.+|+.+.|. .+..+.|.+.++....+++...+..++++++ .++...+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHH
Confidence 345688888889999999999999999998 7788889999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.+|.+......++.|+..++++.+...
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999987654
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=62.61 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
..++..++..|..|-..|-...|.-.|.+++.+.|+ .+.+++.+|..+...|+|+.|.+.|...+++ +
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------D 129 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------D 129 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhcc------C
Confidence 446778888999999999999999999999999999 8999999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
|..-.++.|.|..++--|.++-|.+.+.+-.+
T Consensus 130 p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 130 PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 88888999999999999999999887765543
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00034 Score=55.97 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=81.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965 140 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 219 (245)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la 219 (245)
-+...+|+.-+|++....-++.+.. ..+++..++.+|...|+|++|.-.+++.+=+ .|-.+..+..+|
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rla 195 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLA 195 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHH
Confidence 3455678888999999999999888 8999999999999999999999999999887 888888889999
Q ss_pred HHHHHcC---CHHHHHHHHHHHHHHhh
Q 025965 220 DCYTELG---DLERAARFYDKYISRLE 243 (245)
Q Consensus 220 ~~y~~~g---~~~~A~~~y~~al~~~~ 243 (245)
.+++-+| +++-|.+||.++++...
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9988776 46789999999998764
No 147
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=7e-05 Score=53.83 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.+++|.++-..|+.++|+.+|++++.. .-+.+....++..+|.++..+|++++|...+++++..+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 46788999999999999999999999875 223445677999999999999999999999999987654
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.00011 Score=63.71 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.....+..+..++..|++++|...+...+...|+ ..+...-.|.++...++.++|++.+++++.. +|+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~ 372 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALAL------DPN 372 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCC
Confidence 3446777888899999999999999987776665 6777778999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
......++|.+|.+.|++++|+...+..+....
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 788899999999999999999999988876543
No 149
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.92 E-value=0.00044 Score=54.98 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CC----cchHHHHHH
Q 025965 145 NQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE---GE----YSGSTEAYG 216 (245)
Q Consensus 145 ~g~~~~A~~~~~~al~l~~~~~-d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~---~d----~~~~~~a~~ 216 (245)
..++++|++.|.-|+-.+...+ ++...+..+..+++.|..+|+.+....++++|++.+++. .+ ..+.....+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3578889999888888877655 455578889999999999999888888888888877763 12 224566888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 217 AIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+|.++...|++++|..+|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999998864
No 150
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=3.2e-05 Score=69.75 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+....|...+.+++|.++.++++.++++.+- ....++++|.+....++++.|..+|.....+ +|+...
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~e 554 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAE 554 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchh
Confidence 4444566667789999999999999999887 7888999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+++|++.+|...|+..+|...+++|++.
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999999999999999999999998864
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00024 Score=60.45 Aligned_cols=105 Identities=18% Similarity=0.142 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
.++...+++.+....+....+.+.|..+|...|. .....+..+.++|.+..+.|+..+|+...+.|+.
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 3344455566666666667777888888887664 2334567788999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
+.+. ..+++...|.++...++|++|+++|+++++.-.
T Consensus 316 iD~s------yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 316 IDSS------YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred cCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999 999999999999999999999999999998743
No 152
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.87 E-value=0.00075 Score=60.55 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
.+......+++.++..|...|++++|+.+.++|++..|+ ..+.+...|.++-+.|++++|.+.+..|-.+
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---- 257 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEAREL---- 257 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----
Confidence 455566788899999999999999999999999999988 8899999999999999999999999999877
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
+...-..-...+..+...|+.++|.+....
T Consensus 258 --D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 258 --DLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred --ChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 444434444457777889999999876543
No 153
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=2e-05 Score=43.26 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965 195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 195 ~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
|+++|++ +|+.+.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 7889999 99999999999999999999999963
No 154
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.82 E-value=0.00022 Score=54.29 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----------KYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g----------~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
|+.|.+.++......|. ....+++=|.++..+. -+++|+.-|++||.+ +|...+++++
T Consensus 7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHH
Confidence 56777777777777776 5666666666655543 367788888888888 8999999999
Q ss_pred HHHHHHHcC----CHHHHHHHHHHHHHHhh
Q 025965 218 IADCYTELG----DLERAARFYDKYISRLE 243 (245)
Q Consensus 218 la~~y~~~g----~~~~A~~~y~~al~~~~ 243 (245)
+|.+|..++ |..+|.++|++|.+.++
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 999998655 44566666666665543
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=97.81 E-value=0.00039 Score=60.41 Aligned_cols=83 Identities=13% Similarity=0.013 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226 (245)
Q Consensus 147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g 226 (245)
+-.+|.+..++|+++.+. .+.++..+|.+....++++.|+..|++|+.+ +|+.+.+++..|.+....|
T Consensus 319 ~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 319 AAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNE 386 (458)
T ss_pred HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcC
Confidence 345667788889888888 8999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 025965 227 DLERAARFYDKYISR 241 (245)
Q Consensus 227 ~~~~A~~~y~~al~~ 241 (245)
+.++|.+..+++++.
T Consensus 387 ~~~~a~~~i~~alrL 401 (458)
T PRK11906 387 KIEEARICIDKSLQL 401 (458)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999998875
No 156
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.78 E-value=0.001 Score=49.48 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=78.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----CC-h----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-P----------IEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~d-~----------~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
....|......++.+.++..+++++.+++.- .+ . .....+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344666667788888998899888877531 11 1 112345667888899999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.. +|..-.++..+-.+|...|+...|...|+++.+.+.
T Consensus 89 l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 89 LAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred Hhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999 899999999999999999999999999999988764
No 157
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.78 E-value=9.2e-05 Score=41.17 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
+.+||.+|..+|+|++|+++|++++.+..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45666666666666666666666665544
No 158
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.76 E-value=0.0008 Score=63.67 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
+++.........+.++...|++++|.+.+++.+..+|. .......+|.++...|.+.+|...++.+..+
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l----- 479 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA------NQNLRIALASIYLARDLPRKAEQELKAVESL----- 479 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----
Confidence 44444456666788888999999999999999999998 8888999999999999999999999888877
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
+|....+....|.++..+|++++|....++.++...+
T Consensus 480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 480 -APRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 7888889999999999999999999999888877654
No 159
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.75 E-value=6.5e-05 Score=41.04 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 174 AARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+++++|.++..+|++++|+.+|++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=0.00013 Score=39.79 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
+.+++++|.+|..+|++++|+++|++++++-++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999987653
No 161
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.71 E-value=0.0001 Score=40.97 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.+||.+|...|++++|+++|++++....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999876543
No 162
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00048 Score=55.17 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=74.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
..|..+-..|++++|+++|+..++-.|. ....+-..-.+...+|+.-+||+...+-++. =+++.+++.
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~ 158 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWH 158 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHH
Confidence 3477888899999999999998876554 3333333334567789999999999998887 456688999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 217 AIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.++.+|...|++++|.-+|++.+=
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.70 E-value=0.0048 Score=49.74 Aligned_cols=145 Identities=15% Similarity=0.081 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+.+.+++......+....++..|....+..|- ++... .+.+.++.+++..++|++|+...++-+.++
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-----------s~~~~--qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPF-----------SPYSE--QAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 45666666666666777777777777766654 33332 256667999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHcCCcc-----------hHHHHHHHHHHHHH
Q 025965 163 QNVKDPIEEKKAARGLGASLQRQGK--------YREAIKYHSMVLQISEREGEYS-----------GSTEAYGAIADCYT 223 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~--------~~~Ai~~~~~al~~~~~~~d~~-----------~~~~a~~~la~~y~ 223 (245)
|...+ ...+++-.|.++...=+ -.+|+..+++.+.-+......+ ..+.--..+|+.|.
T Consensus 102 P~~~n---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 102 PTHPN---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCCCC---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87555 45556666666543222 3556677777665544322111 12222345799999
Q ss_pred HcCCHHHHHHHHHHHHHHhh
Q 025965 224 ELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 224 ~~g~~~~A~~~y~~al~~~~ 243 (245)
+.|.+..|...++..++.++
T Consensus 179 kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred HhcChHHHHHHHHHHHhccc
Confidence 99999999999999988764
No 164
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.69 E-value=0.00013 Score=39.69 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+++.+|.+|..+|++++|+++|++++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555554443
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.00057 Score=55.38 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+.+...+.....++..+...|..-+..+|.. .....+++++|.+++.+|+|++|...|..+.+ +
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~ 207 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---D 207 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------cccchhHHHHHHHHHhcccchHHHHHHHHHHH---h
Confidence 3343444444445566666666667666652 12344788999999999999999999999877 4
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.++....++++..+|.+..++|+.++|-..++++++.
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555567889999999999999999999999999887
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.66 E-value=0.00055 Score=64.68 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH-
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS- 211 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~- 211 (245)
.++..+|.+|..+|++++|...|++++++.++ .+.+++++|..+... +.++|+.++++|+..+-..+.....
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~ 189 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE 189 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 47888999999999999999999999999988 999999999999999 9999999999998776543211110
Q ss_pred ---------------H------HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 ---------------T------EAYGAIA------------DCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ---------------~------~a~~~la------------~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
. .....++ .+|...+++++++++++.+++.-+
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 0 1122344 788899999999999999988643
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.65 E-value=0.00012 Score=42.72 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 220 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~ 220 (245)
.++..+|.+|..+|++++|+..|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCCHHHHHHhhh
Confidence 45778999999999999999999999998 8888888888875
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.63 E-value=0.0002 Score=66.86 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
..+..+|..|...+++..|+..|+.|++..|+ ...+..++|.+|.+.|+|..|++.|.++..+ +|...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~ 630 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSK 630 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhH
Confidence 34445788899999999999999999999998 8899999999999999999999999999998 88888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.+-.+..-...|+|++|...+.+.+..+.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998887653
No 169
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.62 E-value=0.0059 Score=47.09 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.++..+|..|...|+.++|.+.|.++.+. ...+......+.++-.+....+++.....+..++-.+.+..+|.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 46677899999999999999999997774 344555667777788888889999999999999999988766644444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.....-|..+...++|..|.+.|-.+..
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 4555567778889999999998866543
No 170
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0005 Score=58.72 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
...++...|......|+.++|+-.|+.|..+.|. ...+|.++-.+|..+|.+.||...-+.+++.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 4556777799999999999999999999999887 7888888888888888888887666655544
No 171
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00028 Score=56.01 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+++.+++.+....-.+..++..|.++|...|.. +.-+-+.+.+|+..++++...+..++|+++.
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~----------------~~Y~tnralchlk~~~~~~v~~dcrralql~ 74 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV----------------ASYYTNRALCHLKLKHWEPVEEDCRRALQLD 74 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCc----------------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence 577777888777778899999999999988752 1233367889999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
++ ...+.+.+|.+......|++||..+.++..+.+...
T Consensus 75 ~N------~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 75 PN------LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred hH------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99 999999999999999999999999999998887654
No 172
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0013 Score=52.50 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC------CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIE------EKKAARGLGASLQRQGKYREAIKYHSMVL 199 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------~d~~~------~~~a~~~lg~~~~~~g~~~~Ai~~~~~al 199 (245)
..++-..|+-++..|+|.+|...|..|+...+++ +++.. ....+.|.+.++...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445578999999999999999999999887764 22222 22347899999999999999999999999
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 200 ~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+. .|++..+|+..|.+....=+.++|...+.++++.
T Consensus 258 ~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 88 8899999999999999888999999999998864
No 173
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.56 E-value=0.0015 Score=48.10 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+.+++........+..++..++.-....|- ++- .-.+.+.+|.+|+..+++++|+..+++-+++.|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-----------g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPF-----------GEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------Ccc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4444555555555666666666666666554 222 223677789999999999999999999999998
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHH
Q 025965 164 NVKDPIEEKKAARGLGASLQRQGK---------------YREAIKYHSMVLQIS 202 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~---------------~~~Ai~~~~~al~~~ 202 (245)
+..+ ...+++..|.+++.+.. ..+|...|++.++.+
T Consensus 79 ~hp~---vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPN---VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCC---ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 8554 66788899999988876 788888888887773
No 174
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.52 E-value=0.0013 Score=45.24 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 181 SLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 181 ~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
...+.|||.+|++.+.+..+......... ....+..++|.++...|++++|...+++++++.++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999988877655 56778899999999999999999999999998753
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0012 Score=59.35 Aligned_cols=110 Identities=16% Similarity=0.078 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q 025965 127 PKKEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR----EAIKYHSMVL 199 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~----~Ai~~~~~al 199 (245)
+....++.++..|..|...++ ...|+..|++|+++.|+ .+.++..++.++.....+. ..+....++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344578888889998887665 78999999999999998 7777777777765543322 1222222222
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 200 ~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
........++..+.+|..+|..+...|++++|..++++|++.-
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2222222244456789999999999999999999999999754
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.50 E-value=0.00035 Score=37.89 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.+++.+|.++..+|++++|+++|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999888
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.49 E-value=0.00032 Score=63.52 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
....++..|.+..+.+++..|...|...+.+.|+ ...+++|++.+|.+.|+-.+|...+++|++. +..
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc------n~~ 585 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC------NYQ 585 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc------CCC
Confidence 4557888999999999999999999999999999 9999999999999999999999999999998 455
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+.|.-.+-.+.|.+++|.+.|.+.++.-
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 56677788888899999999999999887754
No 178
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=0.0001 Score=40.45 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 025965 155 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 192 (245)
Q Consensus 155 ~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai 192 (245)
|++|+++.|+ ...+++++|.++...|++++|+
T Consensus 2 y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN------NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhc
Confidence 7899999999 9999999999999999999986
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.45 E-value=0.0012 Score=59.09 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
++-..|.++...++|++|+..|+.|+.+.++ ....++.++.....+++|+-....-.+.++. .|+.-.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~~ra 144 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL------RPSQRA 144 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhhhHH
Confidence 3445677778888888888888888887777 7778888888888888888777777776666 677777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.|...+.++...|++..|....+...+..
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888888877766554
No 180
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.45 E-value=0.00049 Score=37.39 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+++.+|.+|..+|++++|.++|++++++-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566667777777777777777777766543
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.44 E-value=0.0019 Score=54.02 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
++.+++..+..++.++.+|+.|.+++...+- + ...+.+.+..|+..++|..|...++.|+.+.+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-----------N-----pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-----------N-----PVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCC-----------C-----ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 5778888888889999999999999998763 1 12455779999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
. ...+|...|.+....|+..+|-+.++.++++
T Consensus 163 ~------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 L------YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred H------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 8 8999999999999999999999999999988
No 182
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.43 E-value=0.0026 Score=50.60 Aligned_cols=96 Identities=22% Similarity=0.223 Sum_probs=74.2
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-------CChH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPI 169 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------~d~~ 169 (245)
..+.++..|..++-.+... ..+....+...+.+|+.|...|+.+....++++|++.+... ....
T Consensus 92 t~~~ai~~YkLAll~~~~~---------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIK---------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 4567777777777665431 24556788899999999999999888888888887776642 1233
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
......+-+|..+++.|++++|+.+|.+++..
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45667888999999999999999999998765
No 183
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.41 E-value=0.0013 Score=59.08 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+.-..|.....+|+-++|..+...++..... ...|+.-+|.+++...+|++||++|+.|+.+ ++++..
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~q 110 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQ 110 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcc------cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHH
Confidence 3444589999999999999999999886555 6678889999999999999999999999999 888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+.-++.+-..+||++-....-.+.++.
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 9999999999999998877766666553
No 184
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.39 E-value=0.004 Score=55.99 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=88.8
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++....++|+..|. ....++..|.++-..|++.+|.+..+.|..+... .-....
T Consensus 209 ~~~~Al~~Id~aI~htPt----------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------DRyiNs 266 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPT----------------LVELYMTKARILKHAGDLKEAAEAMDEARELDLA------DRYINS 266 (517)
T ss_pred CHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh------hHHHHH
Confidence 444555555555555443 3446778899999999999999999999998776 555556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc----hHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS----GSTEA---YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~----~~~~a---~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+-.+.+.|+.++|...+..- .+.+.++ ....+ ....|.+|...|++..|.+.|....+.+.
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6777889999999998877663 3333122 12222 34469999999999999999999988775
No 185
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.011 Score=47.45 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
...+..+--.....++++|+..|++++.+...-.........+...+.++.+...|++|-..+.+-.....+....+...
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 34444455566778999999999999999887666666677788899999999999999999888777776666556666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
..+...-.+|.-..||..|..+|+..-+
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 6677667778888899999999987544
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=97.37 E-value=0.0016 Score=49.01 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
......+..|..++.+|++++|...|+-..-+ ++...+.+..+|.|+..+++|++|+..|..+...-
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 36777889999999999999999999987776 77788899999999999999999999999887654
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.37 E-value=0.0053 Score=54.74 Aligned_cols=104 Identities=20% Similarity=0.114 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
..-.+..|+.+...|+.++|++.+++++......+ .....++..+|.++..+.+|++|..++.+..+. .....
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~--Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSk 339 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK--QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSK 339 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH--hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHH
Confidence 34556789999999999999999999885333322 224567899999999999999999999997765 24456
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHh
Q 025965 212 TEAYGAIADCYTELGDL-------ERAARFYDKYISRL 242 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~-------~~A~~~y~~al~~~ 242 (245)
+-.++..|.++...|+. ++|.+++.++-...
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 66777789999999999 77777777765544
No 188
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0065 Score=54.17 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh------------------------CC-ChHHHHHHHHHHHHHHHHcCCHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQN------------------------VK-DPIEEKKAARGLGASLQRQGKYR 189 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------------------~~-d~~~~~~a~~~lg~~~~~~g~~~ 189 (245)
....|.+.+++|+|++|...|+...+-... .. -+......++|.+.++...|+|.
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 334589999999999999988775321100 00 01113345789999999999999
Q ss_pred HHHHHHHHHHHHHHHc---CCcc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 190 EAIKYHSMVLQISERE---GEYS------GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 190 ~Ai~~~~~al~~~~~~---~d~~------~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|++.+++|+++.++. +|.. ....+...++.++..+|+.++|...|...+....
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 9999999999888763 2111 3444677789999999999999999999887543
No 189
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0086 Score=50.49 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAAL 159 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 159 (245)
.+-...+++|.+++..|+|++|...|+-+.
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~ 84 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLM 84 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 334566778999999999999988665443
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.34 E-value=0.0015 Score=61.30 Aligned_cols=97 Identities=27% Similarity=0.390 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
+.-+.--..+++|++|++..+++++..|+ ...+..-+|.++...+. .++|-+.|..|.++ +|+..-+
T Consensus 6 LK~Ak~al~nk~YeealEqskkvLk~dpd------NYnA~vFLGvAl~sl~q~le~A~ehYv~AaKl------dpdnlLA 73 (1238)
T KOG1127|consen 6 LKSAKDALRNKEYEEALEQSKKVLKEDPD------NYNAQVFLGVALWSLGQDLEKAAEHYVLAAKL------DPDNLLA 73 (1238)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCC------cchhhhHHHHHHHhccCCHHHHHHHHHHHHhc------ChhhhHH
Confidence 34466667789999999999999999988 78888899999999988 99999999999999 8999999
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHHhhc
Q 025965 215 YGAIADCYTE---LGDLERAARFYDKYISRLES 244 (245)
Q Consensus 215 ~~~la~~y~~---~g~~~~A~~~y~~al~~~~~ 244 (245)
+-.++..|.. ..+++++-..|.+++..+++
T Consensus 74 WkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~ 106 (1238)
T KOG1127|consen 74 WKGLGNLYERYNDILDLDRAAKCYQRAVLILEN 106 (1238)
T ss_pred HHHHHHHHHccchhhhhhHhHHHHHHHHHhhhh
Confidence 9999999986 55789999999999887754
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.30 E-value=0.0079 Score=48.49 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..++..|......|++++|+.+|++.....|. .....++...++.++++.++|++|+...++-+++ .+.+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~---s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l---yP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF---SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL---YPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---CCCCCCh
Confidence 346778899999999999999999997754443 3345788899999999999999999999998888 4456778
Q ss_pred HHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELG-----D---LERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g-----~---~~~A~~~y~~al~~~~ 243 (245)
..+++..|.++...= | ..+|...++..++.+.
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 889999999976432 2 2455666666666554
No 192
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.27 E-value=0.0029 Score=52.76 Aligned_cols=96 Identities=21% Similarity=0.280 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965 132 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
....+..+++....| ++.+|...|++..+.++. ....+++++.+...+|+|++|.+.+.+++.. ++
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~ 232 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DP 232 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------cc
Confidence 345555677777666 588999999985443322 4567899999999999999999999998765 77
Q ss_pred hHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 025965 210 GSTEAYGAIADCYTELGDL-ERAARFYDKYI 239 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~-~~A~~~y~~al 239 (245)
..++++.|+..+...+|+. +.+.++.++.-
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8889999999999999998 55555555543
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0043 Score=51.14 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+.|-+.++.|+|++|+.-|+.|++. .|. .+..-+|++.+++..|+++.|.++..+.+++-
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqv---sGy---qpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQV---SGY---QPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhh---cCC---CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 44668888889999999999999999888 333 34456789999999999999999998888753
No 194
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.25 E-value=0.0002 Score=62.02 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=85.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
..+..++..++|+.|+..|.+|+++.++ -+..+-+.+.++.+.++|..|+..+.++++. +|....+|+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~ 76 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYV 76 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhc------Cchhhheee
Confidence 3467777889999999999999999998 6667778888999999999999999999999 899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 217 AIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
..|.+...++++.+|...|++......+
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence 9999999999999999999887765543
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0025 Score=54.62 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
++.-|...+..+++..|+.+.+++++..++ ...++.-.|..+...|+.++|+-.|+.|..+ .|...++
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L------ap~rL~~ 370 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQML------APYRLEI 370 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhc------chhhHHH
Confidence 334466777889999999999999999888 8889999999999999999999999999999 7888899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|..+-.+|...|.+.+|...-+.++..+.
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 99999999999999999988888877654
No 196
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0084 Score=53.46 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS------------- 202 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~------------- 202 (245)
+..+++.|++++.++|+..++-. .+. ......-.|.+++++|+|++|+..|+..++--
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~---~~~------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL---DRL------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc---ccc------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 57899999999999999988821 111 12345556788999999999999998763211
Q ss_pred -----------HHcCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 203 -----------EREGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 203 -----------~~~~d~-~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+..... .+..+.++|.|.++...|+|.+|++.+++++++..
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~ 206 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICR 206 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 111111 13556789999999999999999999999966553
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.09 E-value=0.0011 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA 180 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~ 180 (245)
.++.+|..|..+|++++|++.|+++++..|+ ...+...+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~------~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD------DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------CHHHHHHhhh
Confidence 4667899999999999999999999999998 7777776664
No 198
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.09 E-value=0.0011 Score=35.58 Aligned_cols=30 Identities=33% Similarity=0.709 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++++|.+|...|++++|.+.|++.++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 556667777777777777777776666554
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.06 E-value=0.0018 Score=35.09 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
+++.+|.+|...|++++|..+|++++++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445556666666666666666666666554
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.06 E-value=0.054 Score=41.38 Aligned_cols=94 Identities=29% Similarity=0.388 Sum_probs=74.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHH
Q 025965 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA 219 (245)
Q Consensus 141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~~a~~~la 219 (245)
++...|+++.|...+.+++...+. ...........+..+...+++++|+..+.+++.. .+. ....+.+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKL------NPDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh------CcccchHHHHHhh
Confidence 888999999999999999553321 1124455566666688889999999999999888 444 567888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 220 DCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 220 ~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+...+++++|...+..++....
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCc
Confidence 999999999999999999887643
No 201
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.96 E-value=0.0026 Score=36.01 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++.++|.+|..+|++++|..++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4444555555555555555555544443
No 202
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.92 E-value=0.065 Score=42.41 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+.+++.-+...+-..-+-..+.+++...|. ...+++.+|..+...|+|+.|.+.|...+++.|.
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 334444444444343333445555555443 3446777888888899999999988888888877
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------------HHHHH----------
Q 025965 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL------------------------------QISER---------- 204 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al------------------------------~~~~~---------- 204 (245)
...+..|.|..++--|+|+-|.+.+.+-. +.+++
T Consensus 132 ------y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i 205 (297)
T COG4785 132 ------YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNI 205 (297)
T ss_pred ------chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHH
Confidence 55555566655555555555443332111 00000
Q ss_pred --------------------cCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 205 --------------------EGEYS----GSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 205 --------------------~~d~~----~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
..++. ...++|..+|.-|...|+.++|...|+-++.
T Consensus 206 V~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 206 VEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 01111 2455788899999999999999999988875
No 203
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.91 E-value=0.032 Score=45.48 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226 (245)
Q Consensus 147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g 226 (245)
.-...++.+++|++.+...+...........+|.-|...|+|++|+.+++.+...+++.|=..-.......+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34466788999999999888888888889999999999999999999999999988887766677888999999999999
Q ss_pred CHHHHHHHHHH
Q 025965 227 DLERAARFYDK 237 (245)
Q Consensus 227 ~~~~A~~~y~~ 237 (245)
+.+....+.-+
T Consensus 233 ~~~~~l~~~le 243 (247)
T PF11817_consen 233 DVEDYLTTSLE 243 (247)
T ss_pred CHHHHHHHHHH
Confidence 99888776543
No 204
>PRK11906 transcriptional regulator; Provisional
Probab=96.90 E-value=0.013 Score=51.12 Aligned_cols=94 Identities=14% Similarity=-0.058 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+.++..+|.+....++++.|...|++|+.+.|+ .+.+++..|.+....|+.++|++..++++++ +|.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL------sP~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICIDKSLQL------EPR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------Cch
Confidence 3556777799999999999999999999999999 8999999999999999999999999999999 665
Q ss_pred HHHH-HHHHHH-HHHHcCCHHHHHHHHHH
Q 025965 211 STEA-YGAIAD-CYTELGDLERAARFYDK 237 (245)
Q Consensus 211 ~~~a-~~~la~-~y~~~g~~~~A~~~y~~ 237 (245)
...+ ...+-. .|... -.+.|+..|-+
T Consensus 405 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 405 RRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred hhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 3332 222222 45543 46777766643
No 205
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.88 E-value=0.0036 Score=35.43 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+.++.++|.++..+|++++|+.++++++.+.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4578899999999999999999999999887764
No 206
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0082 Score=48.13 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=99.1
Q ss_pred hchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc--cCCCccccccCChHHHHHHHHHHHHHHHHCCCH
Q 025965 71 GGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG--SRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL 148 (245)
Q Consensus 71 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 148 (245)
|.+....+...+.-+.+++..+....++..+...|..++....+- -..+.....+.-+......+++.+.++...|+|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 333334445556678889999999999999999999988765431 011111111122233445677889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
-+++++....+...+. ...+++..|.+....=+.++|-..+.+++++ +|..+.+
T Consensus 247 yevleh~seiL~~~~~------nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l------dpslasv 300 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPG------NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL------DPSLASV 300 (329)
T ss_pred HHHHHHHHHHHhcCCc------hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------ChhhHHH
Confidence 9999999999999888 8999999999999999999999999999998 6655443
No 207
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.83 E-value=0.012 Score=44.91 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHcCC-cchHHH
Q 025965 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK----YREAIKYHSMVLQISEREGE-YSGSTE 213 (245)
Q Consensus 147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~----~~~Ai~~~~~al~~~~~~~d-~~~~~~ 213 (245)
-+++|+.-|++|+.+.|+ ...++.++|.++..++. ..+|..+|++|.+.+++.-+ +|++..
T Consensus 50 miedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 356778889999999998 88999999999887665 33455555555555443211 555443
No 208
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.83 E-value=0.16 Score=43.44 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
....++.-+.....+||++.|-.+..++-+..++ . ..-.....+.....+|||+.|.....+++++ .|.
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr 185 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---D--TLAVELTRARLLLNRRDYPAARENVDQLLEM------TPR 185 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---c--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcC
Confidence 3456666788889999999999999998876433 1 2334556778899999999999999999998 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
...+....-++|...|+++....+..+.
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8889999999999999999888776554
No 209
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.79 E-value=0.00036 Score=58.10 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=81.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
....+.-.+..|.++.|++.|..++++.+. .+..+...+.++...++...|+..|..++++ +++.+..
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ 184 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKG 184 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhcc------Ccccccc
Confidence 334466677789999999999999999888 7888889999999999999999999999998 7777778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
|-..|.+...+|++++|..++..+.++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 888899999999999999999888753
No 210
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0036 Score=52.67 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=64.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221 (245)
Q Consensus 142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~ 221 (245)
+....||..|+...+-.+.+.++ ........+|.++++.|||++|+..|+-+.+- +...+....|+|-|
T Consensus 32 fls~rDytGAislLefk~~~~~E-----EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDRE-----EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACC 100 (557)
T ss_pred HHhcccchhHHHHHHHhhccchh-----hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHH
Confidence 44567899999887766543332 23355667899999999999999999887552 33345677899999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 025965 222 YTELGDLERAARFYDKY 238 (245)
Q Consensus 222 y~~~g~~~~A~~~y~~a 238 (245)
++-+|.|.+|...-.++
T Consensus 101 ~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999998876654
No 211
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.019 Score=47.92 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+...+++......-++..++..|.+++..-. +|....+..+.+.+-+.+..|+|..|+....+|+.+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKC------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677778888888888889999998887653 4555567778888999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
|. ...+++.-+.++....++++|..+++..+.+..
T Consensus 150 P~------h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 PT------HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred cc------hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 98 899999999999999999999999998877633
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.01 Score=48.09 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.....+|.+-.+-||-+.|..+|+..-+....+.+-....-...+.+.++.-+++|.+|...|.+.+.. ++..+
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~------D~~~~ 286 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM------DPRNA 286 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc------CCCch
Confidence 344567999999999999999999777666666666667777888999999999999999999998888 77788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+.+|-|.|..-+|+...|++..+.++++.
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999999998887654
No 213
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.64 E-value=0.064 Score=35.14 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
+......|.-.+...+.++|+...+++++... +....-.++..+..++...|+|.+++.+-..=++++++.+|
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455567777788888888888888887443 34455666777778888888898888888888888776654
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.62 E-value=0.035 Score=41.03 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=68.8
Q ss_pred HHHHHHhhhhhhhcccccccCCCccc--cccCCh-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDE--VIVDPK-----KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 169 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 169 (245)
.....+..+.++++..... .+.... ....+. .....+...++..+...|++++|+..+++++...|-
T Consensus 21 ~~~~~~~~~~~al~ly~G~-~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----- 94 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGD-FLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----- 94 (146)
T ss_dssp -HHHHHHHHHHHHTT--SS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred CHHHHHHHHHHHHHHhCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Confidence 4455556667777665432 111111 111111 122334446677889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCcch
Q 025965 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYSG 210 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~-~~d~~~ 210 (245)
...++..+-.++..+|++.+|+..|++.-+...+ .|..|+
T Consensus 95 -~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 95 -DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred -CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 7888899999999999999999999999877764 465554
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.62 E-value=0.082 Score=43.83 Aligned_cols=90 Identities=24% Similarity=0.323 Sum_probs=70.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH----cCCcc----h
Q 025965 143 LRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER----EGEYS----G 210 (245)
Q Consensus 143 ~~~g~~~~A~~~~~~al~l~~~~~d~---~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~----~~d~~----~ 210 (245)
..+|+++.|..++.++-.+.. ..++ ...+..+++.|......+ ++++|+.++++|+++... ....+ .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467999999999999988775 2232 336777999999999999 999999999999999654 12222 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
...++..++.+|...++.+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 56678889999999888764443
No 216
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.58 E-value=0.016 Score=49.37 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=75.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH---------HhC--CChH--------------HHHHHHHHHHHHHHHcCCHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELA---------QNV--KDPI--------------EEKKAARGLGASLQRQGKYREA 191 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~---------~~~--~d~~--------------~~~~a~~~lg~~~~~~g~~~~A 191 (245)
..+.-+...|++++|.+..+.+++.. +.+ +|+. ..+..+..+|..+++.+.|.+|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 44667788899999988777666421 111 1111 1224577899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 192 i~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
-++++.|++. .+. ...+..+|.++..+|+.++|.+.+++++-.+.
T Consensus 348 ~~~leaAl~~------~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 348 SEALEAALKL------RPS-ASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHhc------CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 9999999887 443 45678899999999999999999999986543
No 217
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.57 E-value=0.099 Score=40.30 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH
Q 025965 151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 230 (245)
Q Consensus 151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~ 230 (245)
-.+.++.-++-+++.........++..+|.-|.+.||+++|++.|.++.+... ......+.+.++-++....||+..
T Consensus 15 ~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34445555555555556666788999999999999999999999999877633 233466778889999999999999
Q ss_pred HHHHHHHHHHHhh
Q 025965 231 AARFYDKYISRLE 243 (245)
Q Consensus 231 A~~~y~~al~~~~ 243 (245)
...+..++-...+
T Consensus 92 v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 92 VEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877664
No 218
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.13 Score=48.26 Aligned_cols=104 Identities=22% Similarity=0.330 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HhCCC-hHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELA----QNVKD-PIE---------EKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~~~d-~~~---------~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
..+++.+......+|-+.|+++|+++-.-+ +-+.+ +.. ....+..-|...-..|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 356667777778888999999888753211 11111 111 1123455677788899999999999765
Q ss_pred H-------------------HHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 199 L-------------------QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 199 l-------------------~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
- .++++.|| -.+.|.+|+.|...|+..+|..+|.+|-.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGD----KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhccc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4 44444443 44677899999999999999999988743
No 219
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.44 E-value=0.027 Score=51.15 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=68.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025965 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 220 (245)
Q Consensus 141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~ 220 (245)
+-+.+.+++.|...+.+|....+. ...++.-+.....+++.++|+..++++++. -|.....|..+|.
T Consensus 627 le~en~e~eraR~llakar~~sgT-------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISGT-------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQ 693 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCCc-------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhH
Confidence 445556677777777776665443 456667777788888999999999999888 6777888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHh
Q 025965 221 CYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 221 ~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++..+++.+.|.+.|...+...
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999888776543
No 220
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.0078 Score=52.69 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCC-
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGE- 207 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~-~~~~~~d- 207 (245)
+.+..+..+|..|+|.+|....... .+...-+ ..-......+|+|.+.++.|.|.-++.+|.+|++ ...+...
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445677788889988888766532 1111211 1111344468999999999999999999999995 4444221
Q ss_pred -c---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 208 -Y---------SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 208 -~---------~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
. .......||.|..|...|+.-.|.++|.++...+..
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 1 134567999999999999999999999999988753
No 221
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.40 E-value=0.0073 Score=50.41 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=63.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g--~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
...-.++...++++.|...++.+.+..++ ......-.+++....| .+.+|...|++..+. .+..+.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~ 202 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPK 202 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHH
Confidence 33467889999999999888876543322 2222333344444444 699999999985332 233456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.++.+|.++..+|++++|.+.++++++.
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999988653
No 222
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.38 E-value=0.22 Score=35.57 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=73.1
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----C-hHH
Q 025965 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----D-PIE 170 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----d-~~~ 170 (245)
..++.+..++.++++..+. ++..+.. +-.-..+.++-.++..+..+|+|++++....+++.+...-+ | -+.
T Consensus 23 g~~~eAa~s~r~AM~~srt---iP~eEaF-Dh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRT---IPAEEAF-DHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTT---S-TTS----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhcc---CChHhhc-ccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 4556666778888877653 1111111 22334666777789999999999999999999999887633 2 223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
...+..+.+..+-..|+.++|+..|+++-++..+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999887654
No 223
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.33 E-value=0.074 Score=46.27 Aligned_cols=91 Identities=18% Similarity=0.045 Sum_probs=74.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l 218 (245)
-......++++.|+..+++..+..++ ....++.++...++-.+|+....++++. .|..+..+...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---------v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---------VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---------HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence 34455668899999999986654432 3445788888999999999999999966 66668888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 219 ADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 219 a~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
+..+...++++.|.+..+++++....
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~ 266 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPS 266 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 99999999999999999999987543
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.33 E-value=0.043 Score=48.32 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 148 LEKAFTEFKAALELAQNVK-------------------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 148 ~~~A~~~~~~al~l~~~~~-------------------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
..+|.++|++|++..+..- |..-...+-+.+|.+.++.|+.++|++.++..++... .
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~ 291 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----N 291 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----c
Confidence 5677777777777665420 1111245567899999999999999999999887621 2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.+....++|+-.++...+.|.++.....++=
T Consensus 292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 292 LDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred cchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 2356789999999999999988877776653
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.29 E-value=0.0098 Score=31.65 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
++++++|.++...|++++|+..|++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36788899999999999999999998776
No 226
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.28 E-value=0.27 Score=45.57 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 127 PKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+...++...+.+|.+++ ...+++.|..+.++++.+..+.+-......+..-++.++...+... |+...++.++.++..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 45678889999999988 7899999999999999998773333334555566688888777666 999999999998875
Q ss_pred CCcchHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 206 GEYSGSTEAYGAI-ADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 206 ~d~~~~~~a~~~l-a~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+..+... +...+ ...+...+|+..|.+.++.......
T Consensus 133 ~~~~w~~-~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 133 GHSAWYY-AFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred CchhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 5444332 22223 3333334899999999998887663
No 227
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.25 E-value=0.0067 Score=31.28 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++.++|.+|...|++++|..+++++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4455566666666666666666655544
No 228
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.20 E-value=0.076 Score=52.07 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
+..+...+.+.|++++|...+++..+. +-.+ ...+|..+..+|.+.|++++|.+.|++.
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQ----GIKL-GTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 334444444455555555444443221 1111 1234444444455555555555444443
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.15 E-value=0.13 Score=39.19 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcc---
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYS--- 209 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~-~~~~~g~~~~Ai~~~~~al~~~~~~~d~~--- 209 (245)
.....|..+...+++..++..+.+++...+.. .......+. ++...|++++|+..+.+++.. .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 164 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALEL------DPELN 164 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcc
Confidence 34445555555555555665555555433321 112222233 666777777777777776443 22
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.....+...+..+...++++.|...+.+++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 4555566666666677777777777777666543
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.042 Score=45.48 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG--- 206 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~--- 206 (245)
..+....+.|-+.+..|+|+.|..-|+.|++...- .+...++++.+.++.|+|+.|+++-.+.++.--+..
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 34556777888999999999999999999987665 566678999999999999999999988776543310
Q ss_pred ---------------C-----cchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965 207 ---------------E-----YSGSTEAYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 207 ---------------d-----~~~~~~a~~~la~~y~~~g~~~~A~~~y 235 (245)
+ ......+.+.-+-+++..|+++.|.+..
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 0 0133455666677888899998887654
No 231
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.02 E-value=0.1 Score=51.16 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+..+-..|...|++++|.+.+.+.......+.. ....++.+-..|.+.|++++|.+.|++..+. + -+....
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P---D~vTynaLI~ay~k~G~ldeA~elf~~M~e~----g-i~p~~~ 615 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP---DHITVGALMKACANAGQVDRAKEVYQMIHEY----N-IKGTPE 615 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-CCCChH
Confidence 3344455555666666666666655432100000 1233444445555566666666655554322 1 111233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.|..+...|.+.|++++|.+.|++..
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44445555555555555555554443
No 232
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.016 Score=50.79 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=83.7
Q ss_pred HHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhC----CC------
Q 025965 99 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNV----KD------ 167 (245)
Q Consensus 99 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~----~d------ 167 (245)
+-...+|.++.+.......-.+...-+.+.-..+..+.++|-++++.|.|.-+..+|.+|++ ....+ +.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44445677776665432222222222344555666778899999999999999999999996 22221 11
Q ss_pred -hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965 168 -PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 168 -~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
.....+.++|+|..+...|++-.|...|.++.+.+. ..+..|..+|.|...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh------~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH------RNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 112456799999999999999999999999998854 345678888887753
No 233
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.11 Score=47.22 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=79.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
+.|.-.++..+|..+++.|...+...+........++..++++.+|....+.|.|.+++.+|-+. +|...-.-.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------d~~~~l~q~ 432 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------DRQSPLCQL 432 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------ccccHHHHH
Confidence 56778888999999999999998877754444445788999999999999999999999998777 665555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 217 AIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+-.+...-|.-++|.....+....+
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 66666777788899998887776654
No 234
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.89 E-value=0.06 Score=32.60 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
.+++.++..+++.|+|++|..+.+.++++ +|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCCcHHHHHH
Confidence 46788999999999999999999999999 7776665443
No 235
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.88 E-value=0.37 Score=37.36 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=87.9
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
++.-.+...|+++++-... + +...++.+++..+..+++..|....++..+..+....+. ..
T Consensus 103 Gr~~EA~~hy~qalsG~fA-----------~----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd----~~ 163 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFA-----------H----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD----GH 163 (251)
T ss_pred hhhhhhHHHHHHHhccccC-----------C----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC----ch
Confidence 3555555667777665432 2 233677889999999999999999998877665433322 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.-+|.++..+|++.+|...|+.++.. .|+ +.+....+....++|..++|...|....+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~------ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY------YPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh------CCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 45678899999999999999999988 443 3455556888889998888888887766654
No 236
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.83 E-value=0.064 Score=50.41 Aligned_cols=26 Identities=8% Similarity=-0.066 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAAL 159 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al 159 (245)
.+..+...|...|++++|...|++..
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45556677777777777777776654
No 237
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.80 E-value=0.0095 Score=51.95 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965 87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK 166 (245)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 166 (245)
+++...........++..|.++|+.-+.- +.-+-+.+..+...++|..|+....+|+++.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnc----------------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-- 70 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNC----------------AIYFANRALAHLKVESFGGALHDALKAIELDPT-- 70 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcc----------------eeeechhhhhheeechhhhHHHHHHhhhhcCch--
Confidence 34444444456788888899999877641 112224567888889999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221 (245)
Q Consensus 167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~ 221 (245)
...+|...|.+....+.+.+|+..|++...+ .|+...+...+..|
T Consensus 71 ----~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l------~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 71 ----YIKAYVRRGTAVMALGEFKKALLDLEKVKKL------APNDPDATRKIDEC 115 (476)
T ss_pred ----hhheeeeccHHHHhHHHHHHHHHHHHHhhhc------CcCcHHHHHHHHHH
Confidence 8999999999999999999999999999888 67666666555544
No 238
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.77 E-value=0.11 Score=48.00 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...++..|..+...++.++|.....+|..+.+. ....++..|..+...|...+|...|..|+.+ +|+.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~h 717 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDH 717 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCC
Confidence 344556788888889999999899999888877 8889999999999999999999999999999 8988
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAAR--FYDKYISR 241 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~--~y~~al~~ 241 (245)
..+...+|.++.+.|+..-|.. ....++++
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 9999999999999998887777 66666654
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.16 Score=41.44 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+.+-+..++.-.|.|.-++..+.+.++.++. ........+|.+.+..||-+.|..+++.+-+...+...-.+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-----~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-----QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 4455677777789999999999998885432 24556778999999999999999999988777666666667778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+.|.+.+|...+++-.|...|++++..
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhcccc
Confidence 8999999999999999999999887754
No 240
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.69 E-value=0.024 Score=47.06 Aligned_cols=81 Identities=27% Similarity=0.251 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
..++...++.+.-....|+.++|...|+-|+.++|+ ..+++..+|...-..++.-+|-.+|-+|+.+ +
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti------s 180 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTI------S 180 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeee------C
Confidence 456677777888888999999999999999999999 8999999999998889999999999999998 8
Q ss_pred chHHHHHHHHHHH
Q 025965 209 SGSTEAYGAIADC 221 (245)
Q Consensus 209 ~~~~~a~~~la~~ 221 (245)
|+...++-|.++.
T Consensus 181 P~nseALvnR~RT 193 (472)
T KOG3824|consen 181 PGNSEALVNRART 193 (472)
T ss_pred CCchHHHhhhhcc
Confidence 8888887776654
No 241
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.66 E-value=0.17 Score=46.17 Aligned_cols=94 Identities=17% Similarity=0.046 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.++..+..-..+++.++|+..++++++.+|. ....+..+|.++-.+++.+.|-+.|...++. -|....
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~------cP~~ip 720 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKK------CPNSIP 720 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc------CCCCch
Confidence 4555567777788899999999999998888 7788888999999999999998888887766 555556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.+..++.+-...|+.-+|...++++.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 66666666666666666666666554
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=0.083 Score=47.23 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965 145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
..+.+.|.+......+.+|+ -...+...|..+...|+.++|++.+++++....+ -..-...+++.+|.++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHH
Confidence 34566777778888888887 6777888999999999999999999998853222 123345678999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 025965 225 LGDLERAARFYDKYIS 240 (245)
Q Consensus 225 ~g~~~~A~~~y~~al~ 240 (245)
+.+|++|.+++.+..+
T Consensus 318 ~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLK 333 (468)
T ss_pred HchHHHHHHHHHHHHh
Confidence 9999999999988775
No 243
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.65 E-value=0.24 Score=32.51 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...-|.=++.+.+.++|+..++++++. ..+.++...++..+..+|.+.|+|++.+.+--.=+++.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k---~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEK---ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677889999999999999876 444667788899999999999999999998777666654
No 244
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.64 E-value=0.038 Score=51.89 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+..+...+...|+.+.|...+++.+++ .|.....|..+..+|...|++++|.+.+++..+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGM------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCC------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444555555666666666665555444 455556788888889999999999888877654
No 245
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.59 E-value=0.23 Score=34.92 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHH-------HHHHHHHHHHHHHHHcC
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYR-------EAIKYHSMVLQISEREG 206 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~-------~Ai~~~~~al~~~~~~~ 206 (245)
.+..++..||+-+|++..+..+...++..+.. ..+.--|.++.. ..|.+ .|++.|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence 36778899999999999999887666544322 233334444432 33433 345555555555
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.|..+..++.+|.=+.....|+++..-.++++.+..
T Consensus 74 -sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~ 109 (111)
T PF04781_consen 74 -SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTN 109 (111)
T ss_pred -ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence 666677777777765555567777777777666544
No 246
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.35 Score=42.73 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
..++..++..|...+.++++.+|.....+.++++..-..-...+-.+.-+|.+....|+..++.+..+-++.++++..|.
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 44666777889999999999999999999999884323333345557789999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 025965 209 SGSTEAYGAIADCYTELGD--LERAARFYD 236 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~--~~~A~~~y~ 236 (245)
+......-.+-..|...|+ -+...+.|.
T Consensus 522 ~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 522 PVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred hHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 8777777777888888888 555544443
No 247
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.49 E-value=0.04 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.++..||.+....++|++|+..|++++++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35666777777788888888888888777554
No 248
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.40 E-value=0.078 Score=50.97 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=79.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
....++...+.|+.|+..|++... +..+...-.++...+|.+...+-.-..--..|.+|+..++...+.++.+--|.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRE---SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhh---cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 344566667778888888887443 45555556677888888877654443334678888888888877888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 217 AIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.-|.+|..+|++++-+++|..|++++.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998874
No 249
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.22 Score=46.74 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHcCCcchH----------HHHHH
Q 025965 151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV----LQISEREGEYSGS----------TEAYG 216 (245)
Q Consensus 151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a----l~~~~~~~d~~~~----------~~a~~ 216 (245)
+.....+|+++++ ..|.......|++.+.-+...+|-+.|++||+|+ .++.+-..++|.. ...|.
T Consensus 838 s~g~w~eA~eiAE-~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~ 916 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAE-TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS 916 (1416)
T ss_pred hcccHHHHHHHHh-hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH
Confidence 3334445555554 3566666777888888888999999999999874 3333333333322 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 217 AIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
-.|......|+.|.|+.+|..|-+.+
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhhhh
Confidence 67999999999999999999998765
No 250
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.13 Score=42.51 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISR 241 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g---~~~~A~~~y~~al~~ 241 (245)
..+.+.-||.+|..+|+++.|...|.+|+++ .+.+++.+..+|.++.... +..++...+++++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 6677889999999999999999999999999 6667778888888876443 457888888888864
No 251
>PRK10941 hypothetical protein; Provisional
Probab=95.18 E-value=0.21 Score=41.19 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
.+.......+.++=.++.+.++++.|+...+..+.+ .|+.+.-+.-.|.+|..+|.+..|...++..++...+
T Consensus 175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 334446777889999999999999999999999999 7877778888999999999999999999999887654
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.5 Score=36.77 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.|..........+|.+...+|.+|+|+.... ...++...+....-.|.++...|+-++|...|++++..
T Consensus 120 ~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 120 KDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4455566677789999999999888776554 45555556666777899999999999999999999887
No 253
>PLN03077 Protein ECB2; Provisional
Probab=95.14 E-value=0.17 Score=48.71 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.++..+...|...|+.++|++.|++..+.- +.. ....+..+-..+.+.|+.++|..+|+...+. .+..|+ .
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g--~~P---d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P~-~ 625 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESG--VNP---DEVTFISLLCACSRSGMVTQGLEYFHSMEEK---YSITPN-L 625 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC---CcccHHHHHHHHhhcChHHHHHHHHHHHHHH---hCCCCc-h
Confidence 345566777888899999999998866421 111 1233445556788889999999999875422 333443 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
..|..+..+|.+.|++++|.+.+++.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 67888999999999999999888763
No 254
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.13 E-value=0.09 Score=49.27 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=57.1
Q ss_pred HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965 144 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 223 (245)
Q Consensus 144 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~ 223 (245)
..++|.+|.....+.++..|+ ...+..--|.+..++|++++|...++. +... .+.....+..+-.+|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~-----~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEA-LYGL-----KGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhh-hccC-----CCCchHHHHHHHHHHH
Confidence 346777777777777776666 555555566677788888888744333 2221 1223445666777788
Q ss_pred HcCCHHHHHHHHHHHHHHhh
Q 025965 224 ELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 224 ~~g~~~~A~~~y~~al~~~~ 243 (245)
.+|++++|...|++++..+.
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCC
Confidence 88888888888888776543
No 255
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.12 E-value=0.042 Score=28.02 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.++..+|.++..+|++++|+..+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678899999999999999999998876
No 256
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.97 Score=36.98 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=63.6
Q ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 136 LKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 136 ~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+..+++-...| +..+|.-+|++.-+..+. ....+++.+.+...+|+|++|...++.++.- ++..++
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpe 242 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPP------TPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPE 242 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCC------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHH
Confidence 33344444433 456666667664442322 5677899999999999999999999999876 777788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y 235 (245)
++.|+-.+-...|.-.++.+.+
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHH
Confidence 9999888888888776665544
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.80 E-value=1.1 Score=39.64 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l 218 (245)
|..-.++.+...|....-.|+..+|. .....+.-..-...++++.--..|++-|+. +|....++...
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~~W~ky 477 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCYAWSKY 477 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhHHHHHH
Confidence 44444444455554444444444442 122222222333334444444444444444 44444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 025965 219 ADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 219 a~~y~~~g~~~~A~~~y~~al 239 (245)
|..=..+||.|.|...|+-|+
T Consensus 478 aElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHh
Confidence 444444444444444444444
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=1.2 Score=37.85 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
.+......|-|++|.+..++++++ +. ....+....+.++...|+..++.++..+.-..-+ ...-..+.-|..
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqi----N~--~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH 252 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQI----NR--FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWH 252 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccC----CC--cchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHH
Confidence 344455556666666666665542 11 1234445556666666666666665554211110 000012233555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 025965 218 IADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 218 la~~y~~~g~~~~A~~~y~~al 239 (245)
.|.+|.+-++|+.|.+.|+.-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 6777777777777777776543
No 259
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.71 E-value=0.34 Score=45.03 Aligned_cols=101 Identities=31% Similarity=0.438 Sum_probs=62.3
Q ss_pred HHHHHHHHCCCHHHHHHHHH------HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------
Q 025965 137 KTGKNFLRNQDLEKAFTEFK------AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS-------------- 196 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~------~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~-------------- 196 (245)
..|.+|-...++++|.++|+ +|+++++- .-+......-..-|.-+..+|+++.|+..|-
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ 744 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG 744 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh
Confidence 34556666677888888654 45555442 2222222222334555666777887777664
Q ss_pred -----HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 197 -----MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 197 -----~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
+++.+.....|.......|..++.-|..+|+++.|.+.|.++
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 344444444454445556777899999999999999988654
No 260
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=2.2 Score=35.99 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
...+....|..|.+-||-+.|.+.+.+..+-.-.++.......+...+|..|....-.. +..++|-.+.++.||=..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChhh
Confidence 34467788999999999999999999998888888888888888889999886544334 444556667777776332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.-..--.-|.......++.+|...+-.++..+.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 222223346666777899999998888776654
No 261
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.51 E-value=0.13 Score=42.78 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=39.9
Q ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 134 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.+...|..-+. .++.+.|...|+.+++.++. ....+......+...++.+.|-..|++++.. .......-
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~ 107 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSK 107 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHH
Confidence 33334444333 33333355555555554444 3333333333444455555555555554433 11111011
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+......=...|+.+...+.++++.+.+
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 223333333334455555555555554443
No 262
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.49 E-value=0.78 Score=39.92 Aligned_cols=103 Identities=18% Similarity=0.084 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CC--------hHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---KD--------PIE-EKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---~d--------~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
....+.+.-|..++++++|..|..-|..|+++..+- ++ -.. .......+..+|.++++.+-|+..-.+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 455666777889999999999999999999988752 11 111 234466899999999999999999999
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
.|.+ +|....-+...|.|+..+..|.+|..-..-+
T Consensus 254 sI~l------nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 254 SINL------NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhc------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 8888888889999999999998887655444
No 263
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.13 Score=46.82 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+.+-+.-.++..+|..|+++|+..++.......+...+....+++.||..+.+.|+|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 345566777889999999999999999987766656667888999999999999999999999998653
No 264
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.40 E-value=0.095 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++|..+|.+-...++|++|.+.|++++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999998764
No 265
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.40 E-value=0.97 Score=36.79 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
..........+|..|+..|++++|..+++.+...+..-+=.......+..+-.++...|+.+..+.+.-+.
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33445566678999999999999999999998888877777777888899999999999999888776554
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=1.4 Score=36.62 Aligned_cols=101 Identities=23% Similarity=0.226 Sum_probs=78.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VL 199 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~---------------al 199 (245)
.+..+.-....|++.+|...+..++...++ ...+...++.++...|+.+.|...+.. -+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344566778889999999999999999888 677888899999999999888766643 23
Q ss_pred HHHHHcC-------------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 200 QISEREG-------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 200 ~~~~~~~-------------d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++..+.. .+|+...+-+.+|..|...|+.+.|.+.+-..+..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4443322 24566778888999999999999999887665543
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.26 E-value=0.33 Score=44.44 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQI 201 (245)
Q Consensus 132 ~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-----~~~~Ai~~~~~al~~ 201 (245)
..+...+|.+|..- .|.+.|+.+++.+.+-... ........+.+.+|.+|.+.. |++.|+.+|.++-+.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~-~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK-AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH-HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 34555667776653 6899999999998772111 000113446778888888743 678888888887544
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 025965 202 SEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS 240 (245)
Q Consensus 202 ~~~~~d~~~~~~a~~~la~~y~~~g---~~~~A~~~y~~al~ 240 (245)
+.+++.+.+|.+|..-. |+.+|.++|..|..
T Consensus 323 --------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 323 --------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred --------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 34567888899888655 67899999988865
No 268
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.69 Score=40.94 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
.-.+....++|..|.+.|+-+. +.++++..... ......+.+++-.|...+.++++.||-...++.++++.
T Consensus 401 dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 401 DLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 3466677788999998776443 33333322211 12233556688889999999999999999999999985
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+.....+-.+..+|.++...|+..++.+-..-+++..
T Consensus 477 aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 477 AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 444444555667788999999999999887776666544
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.19 E-value=1.1 Score=37.18 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
......+.+..+.|...|.+|++- +.. ....+...|...+. .++.+.|...|+.+++.+ +.....+.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~----~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f------~~~~~~~~ 74 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKD----KRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF------PSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----CCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH------TT-HHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHHcC----CCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCCHHHHH
Confidence 344555555688888899998731 211 23445566777566 566677999999999883 33444455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 217 AIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.........||.+.|...|++++..+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 55567788999999999999997653
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.17 E-value=0.15 Score=30.79 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++++.+|..+.++|+|++|..+.+.+++.-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 468889999999999999999999998864
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.16 E-value=4.5 Score=38.53 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=77.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
-.|.+....|++++|++..+.++...+... ......++..+|.+..-.|++++|..+..++.+++++.+...-...+.+
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 458888889999999999999999877533 3335667889999999999999999999999999998887777777788
Q ss_pred HHHHHHHHcCCH
Q 025965 217 AIADCYTELGDL 228 (245)
Q Consensus 217 ~la~~y~~~g~~ 228 (245)
..+.+...+|+.
T Consensus 542 ~~s~il~~qGq~ 553 (894)
T COG2909 542 QQSEILEAQGQV 553 (894)
T ss_pred HHHHHHHHhhHH
Confidence 889999999943
No 272
>PLN03077 Protein ECB2; Provisional
Probab=94.15 E-value=0.39 Score=46.34 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------
Q 025965 140 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------------- 197 (245)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~---------------------- 197 (245)
..+...|+.++|..+|++..+...-.. ....|..+...+.+.|++++|.+.+++
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 345666777777777776653322111 124455666666667777776666654
Q ss_pred ----------HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 198 ----------VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 198 ----------al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+++ +|.....|..++.+|...|++++|.+..+...+
T Consensus 673 ~e~~e~~a~~l~~l------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 673 VELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 2222 455566778888899999999998887766543
No 273
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.98 E-value=0.092 Score=47.26 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=76.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l 218 (245)
|......|+...|+.....|+...|.-.+ ....+++.+...-|-.-.|-..+.+++.+ ....+..++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhc
Confidence 55556689999999999999887775222 23567888888888889999999999988 44456678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 219 ADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 219 a~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
|++|..+.+.++|++.++.|++.-
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC
Confidence 999999999999999999998753
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.45 Score=40.22 Aligned_cols=100 Identities=18% Similarity=0.038 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
...+....-..++.+|+.+.....+++.+..-. .|.........-++..+...|-|++|.+.-++++++ ++.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~ 207 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI------NRF 207 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC------CCc
Confidence 455666667788888999999999999887622 222223444445677788999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
.+-+....+.+....|+..++.++-.+-
T Consensus 208 D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 208 DCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8889999999999999999998876554
No 275
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=1 Score=37.33 Aligned_cols=79 Identities=9% Similarity=0.076 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
+.-++-++.+.+.++-.+..+......++..|+|..|...+|-+.+.+++.+.++-+-.+|-.-+..-+-..+|..|-.
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 4556777778777777776666666788899999999999999999999988887777666555555555555555543
No 276
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.82 E-value=2.8 Score=39.36 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=68.9
Q ss_pred HHHHHHHHCCCHHHHHHHHH------HHH-------------HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Q 025965 137 KTGKNFLRNQDLEKAFTEFK------AAL-------------ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH-- 195 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~------~al-------------~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~-- 195 (245)
..+..|...|+|+.|.+.|. .|+ +++...-.+......|...+.-.-..|+|.+|...|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 45667777777777766442 233 333333334444445666666777888888887777
Q ss_pred ----HHHHHHHHHcCCcc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 196 ----SMVLQISEREGEYS------------GSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 196 ----~~al~~~~~~~d~~------------~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.++|.++.+.+-+. ...+.+..+|.-|...|+++.|.+.|-++-+
T Consensus 850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 46777777755322 2345677789999999999999988876643
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.80 E-value=1.3 Score=33.32 Aligned_cols=85 Identities=19% Similarity=0.081 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+.....+-...++.+++...+....-+.|+ ....-..-|..+...|++.+|+..++....- .+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~~ 77 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APGF 77 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCCC
Confidence 345556667777788999998888887777787 6677777889999999999999999996433 5656
Q ss_pred HHHHHHHHHHHHHcCCH
Q 025965 212 TEAYGAIADCYTELGDL 228 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~ 228 (245)
+.+--.++.|+..+||.
T Consensus 78 p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 78 PYAKALLALCLYALGDP 94 (160)
T ss_pred hHHHHHHHHHHHHcCCh
Confidence 66666778888888875
No 278
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.69 E-value=1.1 Score=36.92 Aligned_cols=135 Identities=7% Similarity=0.053 Sum_probs=80.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
....++.++++.+..-... +++ -..++-.+-.+++.+++|++-++.|.+.+...+..-.......+.+
T Consensus 42 ~p~~Al~sF~kVlelEgEK----------geW--GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN 109 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEK----------GEW--GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN 109 (440)
T ss_pred CHHHHHHHHHHHHhccccc----------chh--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3456677777777765431 222 2334555678899999999999999999987765211111111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++-..-....+.+---++|+..++..+...++......-.-+|.+|+..|+|.+-.+..++.-...+
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq 176 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ 176 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence 2211111222333334556666665555554544455566789999999999888777766655543
No 279
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=1.9 Score=35.31 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 186 g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.+.+|.-+|++--+ + .+..+...+.++.|...+|++++|....+.+++.-.
T Consensus 187 ek~qdAfyifeE~s~---k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE---K---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred hhhhhHHHHHHHHhc---c---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 446677777766322 1 334566788899999999999999999999987643
No 280
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.48 E-value=0.045 Score=45.97 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+-..|.++..+++...|+..+..|+++.++ ...-|-..|.+.+.+|++++|-.++..+.++
T Consensus 148 a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 148 AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 445556799999999999999999999999888 6666777788888999999999999998876
No 281
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.44 E-value=0.22 Score=40.89 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965 151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
|..+|.+|..+.|. .+..++.+|.+....|+.=+|+-+|-+++-. ......+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHH
Confidence 67899999999999 7888999999999999999999999999855 33347788899888887
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.32 E-value=2.3 Score=35.97 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHc-
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE- 205 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~-~~~~~- 205 (245)
....+..++..+.+....|+++.|.....++....+...+. ........+......|+..+|+..++..++ .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 34456677888999999999999999999877654322211 344455667888999999999999988887 22221
Q ss_pred --------------------------CCcchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhh
Q 025965 206 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE 243 (245)
Q Consensus 206 --------------------------~d~~~~~~a~~~la~~y~~~------g~~~~A~~~y~~al~~~~ 243 (245)
.+....+.++..+|...... ++.+.+...|+++++..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 11234566778888887777 888999999999987643
No 283
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=4.1 Score=33.96 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
......+..++|..|.+-++-+.+.+...+.++-+...+-......+-..+|.+|..+.=.++.++..+ .+.++.+|
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~---~~iEkGgD 187 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVAD---DIIEKGGD 187 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH---HHHHhCCC
Confidence 344566788899999999999999999999998888888777777777788988866655555554444 45566665
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
=...-..-...|.-.....++.+|...+-..+..++
T Consensus 188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 322222222335555667788888888777766554
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.24 E-value=0.14 Score=25.86 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y 235 (245)
++.++|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455566666666666665544
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.68 E-value=4.2 Score=34.41 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHh---------------------------CCChHHHHHHHHHHHHHHHHc
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALE-LAQN---------------------------VKDPIEEKKAARGLGASLQRQ 185 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~---------------------------~~d~~~~~~a~~~lg~~~~~~ 185 (245)
..+..+......|+..+|+...+..+. .... ..+....+.++..+|......
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 555668889999999999998887776 2211 112344677888899988888
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 186 ------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 186 ------g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
++.++++..|+++.++ .+....+++.+|..+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKL------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccccHHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHH
Confidence 9999999999999999 777777888888887654
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.65 E-value=2.5 Score=34.97 Aligned_cols=95 Identities=21% Similarity=0.258 Sum_probs=67.0
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-------KYREAIKYHSMVLQIS 202 (245)
Q Consensus 134 ~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-------~~~~Ai~~~~~al~~~ 202 (245)
..+.+|..|.. ..|+.+|..+|++|.+.-.. .. ..+...+|..+..-. +...|+.+|.++...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~- 184 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL- 184 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-
Confidence 55567777776 45899999999998775322 11 344677777776541 233688888887544
Q ss_pred HHcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965 203 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 203 ~~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
....+..++|.+|.. ..|+++|..+|.++-+.
T Consensus 185 -------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 185 -------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred -------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 256788899988864 44899999999998753
No 287
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.47 E-value=10 Score=36.24 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC--HHHHHHHHH----------
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK--YREAIKYHS---------- 196 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~--~~~Ai~~~~---------- 196 (245)
...+.+....|.+....|++++|..+..++.+.+...........+....+.+...+|+ +.+....+.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566777889999999999999999999999988877777777777777777777773 222222221
Q ss_pred ----------------------------HHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 197 ----------------------------MVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 197 ----------------------------~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++++.-......+ ...-+++.++.++..+||+++|....+......
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1111111111111 222234589999999999999998888776554
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.43 E-value=4 Score=36.03 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=44.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 179 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 179 g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
+..++.+|+|.++.-+-.=..++ .| .+.+|..+|.|.....+|++|..++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34468899999999888777777 66 678999999999999999999998864
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.40 E-value=0.21 Score=25.17 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 025965 174 AARGLGASLQRQGKYREAIKYHS 196 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~ 196 (245)
+..++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566667777777777766554
No 290
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.33 E-value=2.7 Score=30.80 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 134 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
..++++++.....+. .+.+..++..++ ..++.....+.+.|+..+++.++|+.|+.|.+..++. +|+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~------e~~ 103 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET------EPN 103 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh------CCC
Confidence 455566666554443 344555555443 3445556778889999999999999999999998887 555
Q ss_pred HHHH
Q 025965 211 STEA 214 (245)
Q Consensus 211 ~~~a 214 (245)
+.++
T Consensus 104 n~Qa 107 (149)
T KOG3364|consen 104 NRQA 107 (149)
T ss_pred cHHH
Confidence 5444
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.29 E-value=4.2 Score=31.31 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
..+.+..|.+....|+...|+.+|.++-... .-+.. .-.+...-+..+...|-|++-..-.+. + ....+|.
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep---L--a~d~n~m 165 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP---L--AGDGNPM 165 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhccccHHHHHHHhhh---c--cCCCChh
Confidence 4567778999999999999999999854322 21221 233445566778888888875554433 1 1223566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
...+...+|..-++-||+.+|.+.|.+..+
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777888999999999999999999987654
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.29 E-value=4.4 Score=35.08 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=63.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
+=..|....+|+.=+...+..-.+ |... ...........|.++.+ .|+.++|+..+..++.- +....++.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~~~d~ 219 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-----DENPDPDT 219 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCCChHH
Confidence 345577777877766666543322 2111 11133445566777777 99999999999997443 24456788
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHHHH
Q 025965 215 YGAIADCYTE---------LGDLERAARFYDKYISR 241 (245)
Q Consensus 215 ~~~la~~y~~---------~g~~~~A~~~y~~al~~ 241 (245)
+..+|++|.. ...+++|+.+|.++.+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 9999999964 22468888998888764
No 293
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.19 E-value=1.6 Score=34.21 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=57.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221 (245)
Q Consensus 142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~ 221 (245)
++.+-.-+.|...|.++ +-.+.+ ..++....+|..|. ..|.++|+..+.+++++.... +.-+++.+..++.+
T Consensus 116 ~Wsr~~d~~A~~~fL~~-E~~~~l----~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~ 187 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQL-EGTPEL----ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASI 187 (203)
T ss_pred HhhccCcHHHHHHHHHH-cCCCCC----CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHH
Confidence 33443446666666543 111222 23556677776665 679999999999999985532 13457889999999
Q ss_pred HHHcCCHHHHHH
Q 025965 222 YTELGDLERAAR 233 (245)
Q Consensus 222 y~~~g~~~~A~~ 233 (245)
|..+|++++|.-
T Consensus 188 ~~~~~~~e~AYi 199 (203)
T PF11207_consen 188 YQKLKNYEQAYI 199 (203)
T ss_pred HHHhcchhhhhh
Confidence 999999999864
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.18 E-value=1.6 Score=38.50 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
..+..-.+.-|...+..|+|.++.-+-.=..+++|+ ..+++-+|.+.....+|++|..++.+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 334445555677788999999999888777778885 78999999999999999999999887
No 295
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.06 E-value=2.9 Score=30.66 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 171 EKKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~---~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...+..++++++.+..+. .+.+..++..++ ..++...-++.+.++..+..+|+|+++..|.+..++.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 456677888888776554 456666666554 22234566788999999999999999999999888753
No 296
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=1.6 Score=39.10 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=65.3
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 025965 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYIS 240 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~-~~~d~~~~~~a~~~la~~y~~~g~-~~~A~~~y~~al~ 240 (245)
+.+.|.....--+.-+|.+..+.|+...|..+|+.+.+-.. +..|....+-+++-+|..|..+|. ..+|..++.+|-+
T Consensus 440 ~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 440 PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 34456666666677899999999999999999998875433 345566788999999999999999 9999999999977
Q ss_pred Hh
Q 025965 241 RL 242 (245)
Q Consensus 241 ~~ 242 (245)
..
T Consensus 520 ~~ 521 (546)
T KOG3783|consen 520 YA 521 (546)
T ss_pred hc
Confidence 65
No 297
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.91 E-value=0.98 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCC
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--EGE 207 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~--~~d 207 (245)
+..+..++.++...+++++|+.+-.+|.-+.... .|+......+.+++......++...|+..+.++..+..- ..+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 3445567889999999999999999888777654 467778888999999999999999999999888665332 235
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.|..+....+++.++...++++.|..+.+.|.+.-
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999999999998743
No 298
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.89 E-value=7.1 Score=39.26 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+..+..+|...+++++|.++++..++-... ....+...|..+.++.+-+.|-..+.+|++...+. ....
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~----eHv~ 1601 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ----EHVE 1601 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh----hhHH
Confidence 4445566666666777777777666655553 45555566666666666666666666666654321 1222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
...-.|.+-++.||-+++...|+..+.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 333345555555555555555544443
No 299
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.86 E-value=3.1 Score=39.51 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+....|....++|+.++|....+. +..-+. + ....+--+-.+|.++|++++|...|++++.. .|+ -.
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~---~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~------~P~-ee 111 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLEA-LYGLKG---T--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK------YPS-EE 111 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHhh-hccCCC---C--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------CCc-HH
Confidence 344458888999999999854443 332221 1 3344556778899999999999999999877 454 33
Q ss_pred HHHHHHHHHHHcCCH
Q 025965 214 AYGAIADCYTELGDL 228 (245)
Q Consensus 214 a~~~la~~y~~~g~~ 228 (245)
..+.+=.+|..-++|
T Consensus 112 ll~~lFmayvR~~~y 126 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444444
No 300
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.80 E-value=0.9 Score=40.70 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
...|+--+..+....|+..|.+++...+. ....+.+.+.++.+ .|+--.|+.....|+++ ++...
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~ 445 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQ 445 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHH
Confidence 33444444556677888889999888877 77778887777765 45667788888888888 89999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+++.|+++..+++.+.+|+++...+...+
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~ 475 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSF 475 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcC
Confidence 999999999999999999999887665544
No 301
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=7.9 Score=32.89 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=71.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHH
Q 025965 143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADC 221 (245)
Q Consensus 143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~~a~~~la~~ 221 (245)
.+.+|.++|+++.++..+.....+.+.........+|.++...||.+++.+.....-+......+-+. ....||.++.-
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 34468999999999999988888887778888889999999999999999988887776655544443 55556666554
Q ss_pred -HHHcCCHHHHHHHHHHH
Q 025965 222 -YTELGDLERAARFYDKY 238 (245)
Q Consensus 222 -y~~~g~~~~A~~~y~~a 238 (245)
|...|++.......-++
T Consensus 166 Yyk~~~d~a~yYr~~L~Y 183 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHALLY 183 (380)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 55677776554443333
No 302
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=4.2 Score=35.38 Aligned_cols=110 Identities=11% Similarity=-0.043 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+++...+|-..|+...-...+..-+..+.--.|....+...+-+=..|..-+.|++|-..-.++- . .+...+...
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~-pe~~snne~ 246 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-Y-PEAASNNEW 246 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-C-ccccccHHH
Confidence 44566677777777776555555555555544333555566566666677777788888877766642 1 111122356
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+...+.+|....-++||..|.+++-+|+....
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 67788889999999999999999988877553
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.36 E-value=1.6 Score=39.92 Aligned_cols=92 Identities=29% Similarity=0.420 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHc
Q 025965 134 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE 205 (245)
Q Consensus 134 ~~~~~g~~~~~~g-----~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g---~~~~Ai~~~~~al~~~~~~ 205 (245)
+.+.+|.+|.... ++..|..+|.++-+.- ...+.+.+|.++..-. |+..|.++|..|.+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~----- 356 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK----- 356 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence 3456788888743 6788999988876542 3566778888876654 67899999999853
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965 206 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
.+...+.+++|.+|.. ..+.+.|..+|+++.+.
T Consensus 357 ---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 357 ---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred ---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 3456789999999874 35789999999998764
No 304
>PRK10941 hypothetical protein; Provisional
Probab=91.33 E-value=3.3 Score=34.21 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
-.....++=.+|...++++.|....+..+.+.|+ ...-.+..|.+|.+.|.+..|...++..++.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344556778899999999999999999999998 7777888999999999999999999998877
No 305
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.30 E-value=11 Score=33.92 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
...++...+|.+....|+.++|++.++..++..+. ........++-.++...+.|.++-..+.+
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34566678899999999999999999998876552 11445788999999999999999888877
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.84 E-value=1.3 Score=29.99 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH
Q 025965 152 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 231 (245)
Q Consensus 152 ~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A 231 (245)
+..++++++..|+ ...+.+.++..+...|++++|++.+-..++.....++ ..+.-.+=.++..+|.-+--
T Consensus 8 ~~al~~~~a~~P~------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~----~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 8 IAALEAALAANPD------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYED----DAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC----CHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc----cHHHHHHHHHHHHcCCCChH
Confidence 4556777777776 7788999999999999999999999888766332222 23445556667777775544
Q ss_pred HHHHHHH
Q 025965 232 ARFYDKY 238 (245)
Q Consensus 232 ~~~y~~a 238 (245)
..-|.+-
T Consensus 78 v~~~RRk 84 (90)
T PF14561_consen 78 VSEYRRK 84 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 307
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.83 E-value=4.9 Score=37.09 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH----------------------------------
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR---------------------------------- 176 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~---------------------------------- 176 (245)
-...+..+|..|.+.|.+++|...|++++..--...|....-.+|.
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 3456667899999999999999999888864433333222111110
Q ss_pred -------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH
Q 025965 177 -------------------------GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 231 (245)
Q Consensus 177 -------------------------~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A 231 (245)
.+-.+-...|++.+-+..|.+|++.-.=..-.-.....+..+|..|...|+.+.|
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 1111122334566666677766543210000112345678899999999999999
Q ss_pred HHHHHHHHHH
Q 025965 232 ARFYDKYISR 241 (245)
Q Consensus 232 ~~~y~~al~~ 241 (245)
...++++...
T Consensus 407 Rvifeka~~V 416 (835)
T KOG2047|consen 407 RVIFEKATKV 416 (835)
T ss_pred HHHHHHhhcC
Confidence 9999998763
No 308
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.69 E-value=8.3 Score=31.65 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCCcchHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~-~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.++.-+....+.|++..|.+...-.++.+...+.+.... ...++..+....+.-+ +=....+++++-.+..+...+.+
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 333446778888999999888777777777655444332 3356666666554333 45566677888774444455788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYD 236 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~ 236 (245)
..|..+|..|.+-|++.+|..++-
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999998873
No 309
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=90.61 E-value=4.9 Score=28.91 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---------~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+|......+++-.|+-.|++|+.+.++..... -......|+|..+...||.+-..+|++-|-+
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444455555555555555555544432000 1122355667777777777766666665544
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.43 E-value=7.2 Score=32.36 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...++..+...+...|+++.+++.+++.+.. +|-.-..|..+=..|...|+...|+..|++.-+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 5677889999999999999999999999988 78778889999999999999999999998876643
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.27 E-value=1.1 Score=37.52 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+.+.-..+.|+.++|...|+.|+.+ .|..++++..+|......++.=+|.++|-+|+.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 344455567889999999999999999 8888999999999999999999999999988754
No 312
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.20 E-value=10 Score=33.47 Aligned_cols=105 Identities=16% Similarity=0.018 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc----
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE---- 205 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~-------~~Ai~~~~~al~~~~~~---- 205 (245)
.+|..++..+||+.|...|+.+..-+.+.+.....+.++...|.+....+.. ++...+++.|+..+.+.
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~ 292 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPR 292 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccc
Confidence 5799999999999999999999987776666666777777788888777744 37778888888887762
Q ss_pred CC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 206 GE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 206 ~d-~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.. ......+....+.++...|.+.+|...+-+....
T Consensus 293 ~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 293 CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 11 2245556777788888999988887777666544
No 313
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.98 E-value=5.1 Score=34.85 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--cchH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE--YSGS 211 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d--~~~~ 211 (245)
++..+|..|..-|+.+.|++.|-++.+...+.+ .....+.|+-.+...+|+|..-..+-.+|......... ....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 455679999999999999999999888776633 35556677777788889999999998888776311000 1112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
+...+.-|.+...+++|+.|.+++-.+
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 234555566777778999998887543
No 314
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.86 E-value=11 Score=37.67 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=94.2
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
-+.......+.+++...+..++...|...+.+++.+..-. .+.........+++..+...++++.|+.+.+.|+...+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4556677788888999999999999999988887765422 23444556678899999999999999999999999777
Q ss_pred HcCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 204 REGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 204 ~~~d--~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+... ....+..+..+++++...+++..|....+....++.
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 6432 335677899999999999999999999988887764
No 315
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.85 E-value=5.4 Score=28.70 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--ChHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DPIE-------EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--d~~~-------~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
..+|...+..+++-.++-+|++|+.+..++. +... ......|++..++.+||.+-.++|++-|-+.-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3468888999999999999999999998863 1111 22347799999999999999999998765443
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.82 E-value=17 Score=33.82 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL-GASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~l-g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
.+..+...++.++...+... |....++.++..+..+..... .++.-+ .......+|+..|++.++.....+...+|.
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 34555556689999887776 999999999998875544433 333333 222323389999999999999999888887
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.....+....|.+....+..+.+.+..++++...
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 7777777777888888888888888888886544
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.71 E-value=10 Score=31.29 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh----CC---Ch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 130 EELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN----VK---DP-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 200 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~----~~---d~-~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~ 200 (245)
.-+..+++.|...+..+ +++.|..++++|.++.+. .. +. .....++..++.++...+.++...+ ..++++
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~ 111 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence 45667889999999999 999999999999999633 11 11 3456778999999999988865444 455555
Q ss_pred HHHH-cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 201 ISER-EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 201 ~~~~-~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+. .++.+... +..+-.+. ..++.+.+.+.+.+.+...
T Consensus 112 ~l~~e~~~~~~~~--~L~l~il~-~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 112 LLESEYGNKPEVF--LLKLEILL-KSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHhCCCCcHHH--HHHHHHHh-ccCChhHHHHHHHHHHHhc
Confidence 5543 33333322 12222222 2678888888887777643
No 318
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=8.1 Score=32.71 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
-++-++.+.+.++-+.+........++..+.|..|.+.||-+.|++.+++..+-.-..|..-+..-+...+|..|..
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence 35556677777777766555666889999999999999999999999999887766667666666666667766653
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.25 E-value=4.9 Score=29.95 Aligned_cols=83 Identities=23% Similarity=0.155 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+......-...++++++........-+.|+ ....-.--|.++...|++++|+..++...+- .+..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchH
Confidence 3334444555578899988888877777787 5555566788999999999999999986443 334455
Q ss_pred HHHHHHHHHHHcCCH
Q 025965 214 AYGAIADCYTELGDL 228 (245)
Q Consensus 214 a~~~la~~y~~~g~~ 228 (245)
+--.++.|..-+||.
T Consensus 80 ~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 80 GKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHhcCCh
Confidence 555677788878774
No 320
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.95 E-value=2.7 Score=37.34 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=68.3
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHH
Q 025965 143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADC 221 (245)
Q Consensus 143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~ 221 (245)
..+++++.....|++-++..|. .+.+..+.|..-...|+.+.|-..|+-|++-.. -|.| ....+|. +-
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~--ldmpellwkaYI---dF 516 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPE------NCYAWSKYAELETSLGDTDRARAIFELAISQPA--LDMPELLWKAYI---DF 516 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChH------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc--cccHHHHHHHhh---hh
Confidence 4567889999999999998888 899999999999999999999999999876421 1111 1122222 22
Q ss_pred HHHcCCHHHHHHHHHHHHHHhh
Q 025965 222 YTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 222 y~~~g~~~~A~~~y~~al~~~~ 243 (245)
=...|++++|...|++.++..+
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhcc
Confidence 2468999999999999988653
No 321
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.92 E-value=13 Score=32.42 Aligned_cols=95 Identities=25% Similarity=0.225 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.++.-++.-...|+++.|..-|+..+ .|+......+++|=.--.+.|+++.|..|-..+... -|....
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~W 189 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPW 189 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCch
Confidence 44445778888899999999998754 344445556777777778899999999999998776 444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+....=......||++.|++..+...+
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444444456678999999998876654
No 322
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.75 E-value=0.8 Score=36.70 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 182 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 182 ~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+|.+.|.+.|.+++.+ -|.....+..+|....+.|+++.|...|++.+++-
T Consensus 5 ~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34567778888888888777 66667777888888888888888888887777653
No 323
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.64 E-value=14 Score=32.45 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025965 95 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSR--LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK 172 (245)
Q Consensus 95 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 172 (245)
+..+..+...|..+++....+..+........++-....++ -.+..+|..+++++.|+.+--+.+.+.|. ..
T Consensus 189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~f 262 (569)
T PF15015_consen 189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YF 262 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hh
Confidence 34556666677777777666544444221111222222222 26788999999999999999999888887 55
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
.-+..-+.+++...+|.+|-.-+.-+.=++--.|
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566778889999999999887777765555443
No 324
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.63 E-value=12 Score=31.67 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ--NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
...-+.....+|.+|-..+++..|...... +.+.. .-.|.......+..+|..|...++..+|..+-.++-=+....
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 344555667889999999999998876542 21111 112233345567889999999999999999888763332222
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.++......-...|++....+++=+|.+.|.+...
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32232333333457777778888777777765443
No 325
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.56 E-value=1.6 Score=28.40 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+...+.-+-..|++.+|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444666677777777777777777777665
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.51 E-value=1.1 Score=25.91 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 216 GAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 216 ~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+++|.+|...||++.|.+..++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577778888888888777777764
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.47 E-value=4.8 Score=33.57 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+...+..|...|.+.+|+.+.++++.+ +|.....+..+-.++..+||--.|.+.|++.-+..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 445667789999999999999999999 888888888888899999999999999988766543
No 328
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=15 Score=31.37 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
+.++.-+......++.+..-+.+...-..-..+...|...++|.+|+......++-.++..|.....+.+..-..+|+.+
T Consensus 102 ~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l 181 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHAL 181 (411)
T ss_pred CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHH
Confidence 44556666777777777664444433344456778899999999999999999999999999888888888888899999
Q ss_pred CCHHHHHHHHHHHH
Q 025965 226 GDLERAARFYDKYI 239 (245)
Q Consensus 226 g~~~~A~~~y~~al 239 (245)
.+..+|...+..|-
T Consensus 182 ~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 182 RNLPKAKASLTSAR 195 (411)
T ss_pred hcchhHHHHHHHHH
Confidence 99888887766553
No 329
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=6.4 Score=32.82 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
..++.-+...+..++.+..-+........-..+...++..|.|.+|+......+.-.++..|.++....|..-..+|...
T Consensus 99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~i 178 (421)
T COG5159 99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEI 178 (421)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHH
Confidence 44555566666666666553333333344456778899999999999999999999999999998888888889999999
Q ss_pred CCHHHHHHHHHHHH
Q 025965 226 GDLERAARFYDKYI 239 (245)
Q Consensus 226 g~~~~A~~~y~~al 239 (245)
.+..++..-...|-
T Consensus 179 rnv~KskaSLTaAr 192 (421)
T COG5159 179 RNVSKSKASLTAAR 192 (421)
T ss_pred HhhhhhhhHHHHHH
Confidence 88888877665553
No 330
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=88.13 E-value=18 Score=36.72 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+...|...+.+.+-+.|.....+|+...|..+ .......-+..-+..||.+.+-..|+-.+.- .|-.
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKR 1633 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPKR 1633 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------Cccc
Confidence 34566668888887777788888899998877622 3344455677788889999988888887766 5555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+.|.-..+.=.+.|+.+.+...|++++.
T Consensus 1634 tDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55666666666777888888888887775
No 331
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.02 E-value=2 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+...|.-.-..|+|++|+.+|.++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344556666777777777777777777654
No 332
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=0.29 Score=41.40 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------C-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVK--------D-----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--------d-----~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
-..|.-.+..++++.|..-|.+++....... + .........+++.+-...+++..|+.....+++.
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~- 304 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD- 304 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc-
Confidence 3467788999999999999999887665211 0 1112234678888999999999999988887773
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 203 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 203 ~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++....+++..+..|..+.++++|.+.+..+....
T Consensus 305 -----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 305 -----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred -----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 77788899999999999999999999998886543
No 333
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.77 E-value=19 Score=33.94 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------cC-------CcchHHHHHHHHHHHHHHcCCHHH
Q 025965 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER---------EG-------EYSGSTEAYGAIADCYTELGDLER 230 (245)
Q Consensus 167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~---------~~-------d~~~~~~a~~~la~~y~~~g~~~~ 230 (245)
|......+.+++|..+..+..+++|.++|.+.-..... -+ .-|.....+--+|..+...|--++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 44556778888888888888888888888654221110 00 012223334457777777787777
Q ss_pred HHHHHH
Q 025965 231 AARFYD 236 (245)
Q Consensus 231 A~~~y~ 236 (245)
|.+.|-
T Consensus 871 AV~a~L 876 (1189)
T KOG2041|consen 871 AVEAYL 876 (1189)
T ss_pred HHHHHH
Confidence 777663
No 334
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.75 E-value=2.7 Score=23.07 Aligned_cols=22 Identities=36% Similarity=0.618 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 025965 174 AARGLGASLQRQGKYREAIKYH 195 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~ 195 (245)
...++|..+..+|+|++|+..|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3556677777777777777773
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.71 E-value=1.1 Score=35.99 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=49.4
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
....++.+.|.+.|.+++++.+. ....+..+|......|+.+.|...|++++++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 44568999999999999999998 7888899999999999999999999999988
No 336
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=17 Score=31.01 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~-~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
|+..-....+.-...|+...+..+|......|...+..+--+. ..+..-..-|..+..-.||..|..||-+|.+-+...
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 3333334555557788888888999888888887776654333 344444555677777788999999998888777766
Q ss_pred CCcchHHHHHHHHHHHHHHcCCH
Q 025965 206 GEYSGSTEAYGAIADCYTELGDL 228 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~ 228 (245)
+++.....++-.+=.|-..++..
T Consensus 243 ~~~v~A~~sLKYMlLcKIMln~~ 265 (411)
T KOG1463|consen 243 DDDVKALTSLKYMLLCKIMLNLP 265 (411)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCH
Confidence 66544444433333333333333
No 337
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.30 E-value=2.9 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYD--KYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~--~al~ 240 (245)
+.++.+|-.+...|++++|.+.|+ -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778999999999999999954 4443
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.58 E-value=3.1 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 176 RGLGASLQRQGKYREAIKYHSMVLQ 200 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~ 200 (245)
.+++.+|..+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4678888899999999988888763
No 339
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.95 E-value=2.2 Score=28.11 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+.+.|..+-..|+.++|+.+|+++++.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 333444444444455555555555555444
No 340
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.80 E-value=20 Score=32.45 Aligned_cols=76 Identities=22% Similarity=0.088 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQI 201 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~ 201 (245)
+|......-.+..|.+...+|+...|..+|...++-. ....|+...+.+++.+|..+..++. ..++..++.+|-+.
T Consensus 443 ~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 443 DDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4555667777789999999999999999998777543 3456788889999999999999999 99999999998665
No 341
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.68 E-value=7.7 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 025965 185 QGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 185 ~g~~~~Ai~~~~~al~~~~~ 204 (245)
.|+|++|+..|.++++.+..
T Consensus 19 ~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 19 KGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 35566666666666655554
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.63 E-value=5.3 Score=30.78 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=53.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH--HHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEAYG 216 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~--~~a~~ 216 (245)
+.-.-..++.++|+.-|... .+.+...+...+....|.+....|+...|+.+|.++-.- .. .|.. -.+..
T Consensus 65 AL~lA~~~k~d~Alaaf~~l----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~-~P~~~rd~ARl 136 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDL----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TS-IPQIGRDLARL 136 (221)
T ss_pred HHHHHHcCCchHHHHHHHHH----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CC-CcchhhHHHHH
Confidence 33344456667776665542 234444555667788899999999999999999986332 11 2221 22334
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 025965 217 AIADCYTELGDLERAARF 234 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~ 234 (245)
.-|.+....|-|++-...
T Consensus 137 raa~lLvD~gsy~dV~sr 154 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSR 154 (221)
T ss_pred HHHHHHhccccHHHHHHH
Confidence 445556677877765543
No 343
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.57 E-value=8.3 Score=35.03 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965 156 KAALELAQNVKDPIEEKKAARGLGASLQ--RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~--~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
++.+-+.-+.+.-...+-++.+||.+-- ...+-..++..|.+|+..++..-++. ....|..+|..|+..++|.+|..
T Consensus 261 q~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~~~~eA~~ 339 (618)
T PF05053_consen 261 QDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHKRYREALR 339 (618)
T ss_dssp HHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHHHHHHHHH
Confidence 3444444445555556667777777643 23345668999999999988765433 33457788999999999999999
Q ss_pred HHHHHHHHhh
Q 025965 234 FYDKYISRLE 243 (245)
Q Consensus 234 ~y~~al~~~~ 243 (245)
+|..|-+.+.
T Consensus 340 ~Wa~aa~Vi~ 349 (618)
T PF05053_consen 340 SWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.11 E-value=5.2 Score=27.01 Aligned_cols=44 Identities=25% Similarity=0.217 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 192 i~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+..+++.+.- +|....+.+.+|..+...|++++|.+.+-..++.
T Consensus 8 ~~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666665 8888999999999999999999999988777654
No 345
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.88 E-value=3.3 Score=27.08 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.+..+...+.-.-..|+|++|+.+|.++++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445667777888899999999999998776
No 346
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.46 E-value=9 Score=31.80 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCCcc
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGEYS 209 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~-~~~~~~d~~ 209 (245)
...++..++..+...|+++.++...++-++..|- .-.++..+-..|...|+...|+..|++.-+ ..+..|-.|
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 4455666788888999999999999999888876 677788888899999999999999999876 444444444
No 347
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=84.26 E-value=3.9 Score=33.58 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.-....|.++...|+-.++.-+|...+..+....|..|+...+|+-|-.+|.+|.+.+.+
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 346788999999999999999999988888888999999999999999999999998664
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.20 E-value=4.5 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+......|...-..|++++|+.+|.++++....
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3455667788888999999999999999886654
No 349
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.04 E-value=11 Score=35.00 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=66.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH--
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY-- 215 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~-- 215 (245)
.+..--..|-++.....|++.+++--. .+..-.|.|..+-...-+++|...|++.+.+++ -|...+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~t 552 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNT 552 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHH
Confidence 344455556666666777777766544 566677888888888888999999999998876 55554443
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 216 -GAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 216 -~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
......-+.--..+.|...|++|++..
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 333333344457899999999999854
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.03 E-value=26 Score=29.16 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
.++++|+..|++.+++-+.-++ .--.++-.+-.+++++++|++-++.|++.+...+..-.....-.+.+++-+.-...
T Consensus 41 ~~p~~Al~sF~kVlelEgEKge--WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGE--WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cCHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4899999999999998754222 23456777888999999999999999998877664321111122333333333344
Q ss_pred CCHHHHHHHHHHHHHHh
Q 025965 226 GDLERAARFYDKYISRL 242 (245)
Q Consensus 226 g~~~~A~~~y~~al~~~ 242 (245)
.+.+--.++|+.-++.+
T Consensus 119 ~~m~LLQ~FYeTTL~AL 135 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDAL 135 (440)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555556666555544
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.90 E-value=25 Score=28.94 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQ-------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 134 ~~~~~g~~~~~~g-------~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~ 202 (245)
+.+.+|..|..-. +...|...|.++-... ...+...+|..|.. ..++++|..+|.++-+.
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~- 220 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ- 220 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-
Confidence 3555666666531 2235666676665433 46678888877754 44899999999998654
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHH
Q 025965 203 EREGEYSGSTEAYGAIADCYTELG---------------DLERAARFYDKYISR 241 (245)
Q Consensus 203 ~~~~d~~~~~~a~~~la~~y~~~g---------------~~~~A~~~y~~al~~ 241 (245)
.. ..+.++++ ++...| +...|..++.++...
T Consensus 221 -----g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 221 -----GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred -----CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 22 66788888 666555 888888888877654
No 352
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=82.88 E-value=2.1 Score=35.10 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 186 g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
-....|.+...+|+-.++..+|......+....+..|+...||+.|..||.+|...+..
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 45678999999999999999987766667777888999999999999999999987654
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.72 E-value=3.6 Score=32.28 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 193 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~ 193 (245)
+...+.+|..|. ..|.++|+..+.+++++.+. +....++.+..|+.++..+|+++.|--
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 335555666555 68999999999999998765 224457888999999999999998854
No 354
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.31 E-value=7.3 Score=34.13 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
+...+.+++...|||..|+...+-. ++.+. .+-+......++.+|.+|..+++|.+|+..|...+-...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4446778899999999998865421 11110 112333556689999999999999999999999987766554
No 355
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.31 E-value=3.3 Score=36.22 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 174 AARGLGASLQRQGKYREAIKYHSMVLQISER---EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~---~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+..++..++.-.|||..|++..+. +++-++ ....+.....++.+|-+|..+++|.+|+..+...+-...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788899999999998764 222111 111234555789999999999999999999999886553
No 356
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=82.18 E-value=6.6 Score=30.52 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=61.7
Q ss_pred CCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965 146 QDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQR-----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 219 (245)
Q Consensus 146 g~~~~A~~-~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~-----~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la 219 (245)
|+|-+++. .|++|..+++..-|....+...+.+|.-+.. .++...|++.|+.+-+ .+.+.+-.++|
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~g 112 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLG 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhh
Confidence 55666665 3777777777766777777777877765542 4568888988888754 34567778888
Q ss_pred HHHHH-----cCC--HHHHHHHHHHHHHH
Q 025965 220 DCYTE-----LGD--LERAARFYDKYISR 241 (245)
Q Consensus 220 ~~y~~-----~g~--~~~A~~~y~~al~~ 241 (245)
.+... .+| .++|..|+.++-+.
T Consensus 113 Ll~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 113 LLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 88764 233 78999999888653
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.17 E-value=3.1 Score=37.91 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
...+++++....|-...|-....+++.+.-. .....+.+|..+....+.+.|++.+++|++.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4556788888888888999999999988755 6667888999999999999999999999988
No 358
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.67 E-value=12 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+..+...|.-.-..|+|++|+.+|..++++...
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4556667788889999999999999999997754
No 359
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.26 E-value=12 Score=30.88 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
........++=..+.+.++++.|..+-.+.+.+ .|..+.-..-.|.+|..+|.+.-|++.++..++...+
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 335666778888899999999999999999888 7777777778899999999999999998887776543
No 360
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.01 E-value=6.9 Score=25.78 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
...+......|..+-..|+.++|+.+|++++.....
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777666554
No 361
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.99 E-value=5.1 Score=26.20 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+...|.-.-..|+|++|+.+|.++|+.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444556666777778888888888777655
No 362
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=39 Score=29.83 Aligned_cols=117 Identities=5% Similarity=-0.072 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
.+-.......+..+.++....++..|.....+..-..............+..++.++.+.+....++.+.-.++....+.
T Consensus 267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey 346 (482)
T KOG4322|consen 267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY 346 (482)
T ss_pred chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence 34444556677789999999999999999988877777777777788889999999988888899999998888887777
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+...+.+-.+++.....+|-.++|......++..+
T Consensus 347 ~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~I 383 (482)
T KOG4322|consen 347 SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLI 383 (482)
T ss_pred ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHH
Confidence 6666677778889999999999999999998887654
No 363
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=80.08 E-value=22 Score=27.85 Aligned_cols=104 Identities=22% Similarity=0.177 Sum_probs=59.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHcCCcc----
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL----QISEREGEYS---- 209 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al----~~~~~~~d~~---- 209 (245)
.+......|++++|...+++|.+....++.........++-|.+-..+..|.+|...|.-.- ....+.+-++
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yi 114 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYI 114 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHH
Confidence 35555667899999999999988887755443333445555666666677888877664321 1111111111
Q ss_pred -hHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHH
Q 025965 210 -GSTEAYGAI---ADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 210 -~~~~a~~~l---a~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+.+++-.-+ .......|++++|..+++-.-++
T Consensus 115 lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 115 LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111111111 22234688999999888655443
No 364
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=80.00 E-value=5 Score=40.37 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~ 185 (245)
........+|..+...|.+.+|+.+|.+|++..+..+|..+.+.|+-+++.+..-.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 44555667899999999999999999999999999999999999999998776544
No 365
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.47 E-value=4.4 Score=39.44 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
.+++++..|.+.....|. ++.--.+.+..|.....+-+-..--..|.+|+.....+-++...+--|.
T Consensus 490 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 490 LYDQALIFYRRIRESFPG-------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred HHHHHHHHHHHHhhcCCC-------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 345555666665555543 1112224555566655432222222567888888887777777788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
+.+.+|.++|+|+|-++.|..|++.+.+...
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999988665443
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.16 E-value=37 Score=28.49 Aligned_cols=111 Identities=12% Similarity=0.055 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
+-.+.+.++..|...|++..-.+......+...+...+........-+-..-.....++.-+..+...++.+.+.+....
T Consensus 44 qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL 123 (421)
T COG5159 44 QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL 123 (421)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788999999999988777666666655555444433322222233345566788888999988888776554444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
....-.-+..++.+.|+|.+|+...+-.+.-
T Consensus 124 r~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 124 RLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4445566788899999999998877665543
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.67 E-value=24 Score=29.63 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=50.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
..+..|...|.+.+|+.+.++++++.|- ....+..+-.++...||--++++.|++--+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 4577899999999999999999999886 5566677778899999999999999885444
No 368
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.99 E-value=44 Score=29.32 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 025965 155 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 234 (245)
Q Consensus 155 ~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~ 234 (245)
.+.-++-+++..-......++..+|.-|...|+.+.|+..|-++-+.+...+ .....+.|+=.+-...|+|..-..+
T Consensus 133 L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy 209 (466)
T KOG0686|consen 133 LDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSY 209 (466)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhH
Confidence 3333333444334444677899999999999999999999999888776433 3556677777777788888888887
Q ss_pred HHHHHHH
Q 025965 235 YDKYISR 241 (245)
Q Consensus 235 y~~al~~ 241 (245)
-.+|.+.
T Consensus 210 ~~~A~st 216 (466)
T KOG0686|consen 210 ISKAEST 216 (466)
T ss_pred HHHHHhC
Confidence 7777665
No 369
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.69 E-value=17 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
++..+...|..--..|+|++|+..|..|+++.-..+++..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~ 44 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETM 44 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhh
Confidence 4555666677778889999999999999998876444433
No 370
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.52 E-value=15 Score=31.89 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHH---HHcCC--cchHHHHHHHHHH
Q 025965 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL-QIS---EREGE--YSGSTEAYGAIAD 220 (245)
Q Consensus 147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al-~~~---~~~~d--~~~~~~a~~~la~ 220 (245)
..++|+..|.++.++.++ ...--|++..+...|.-.+.....++.. .+. -+.++ .......+-.++.
T Consensus 241 ~ldkAi~~Y~kgFe~~~~-------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~E 313 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPD-------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLE 313 (374)
T ss_pred HHHHHHHHHHHHHcCCcc-------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 467888889888887643 2333456666666666444443344332 222 12221 2223334556777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHh
Q 025965 221 CYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 221 ~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..-.||+++|.+.+++++...
T Consensus 314 a~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 314 ASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHcCCHHHHHHHHHHHhhcC
Confidence 8889999999999999998653
No 371
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.30 E-value=10 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+..+...|.-.-..|+|++|+.+|.++++....
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445556677888889999999999888887654
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=75.64 E-value=8.5 Score=36.04 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=29.4
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.|+....+++.++|..+.++-++++|.+||.+.-
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466788899999999999999999999998754
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.91 E-value=20 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+..+...|.-+-..|++.+|+.+|++++++...
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3456667788899999999999999999987665
No 374
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=74.75 E-value=15 Score=23.71 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 025965 185 QGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 185 ~g~~~~Ai~~~~~al~~~~~ 204 (245)
.|++++|+.+|.++++....
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 45555555555555544443
No 375
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.62 E-value=17 Score=30.40 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
..-+.-....|++.+|...+..++.. .+....+...++.+|...|+.+.|...+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQA------APENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHh------CcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34455677889999999999999998 666677889999999999999998877754
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.61 E-value=25 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q 025965 189 REAIKYHSMVLQISERE--GEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISR 241 (245)
Q Consensus 189 ~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y-~~~g~~~~A~~~y~~al~~ 241 (245)
+.|...|++|+++++.. ..+|.......|.+..| .-+|+.++|.+..++|++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55666677777766662 23344444444444443 3467777776666666554
No 377
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=73.03 E-value=13 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334555666677788888888888887654
No 378
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.18 E-value=15 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=11.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
.|.-.-..|+|++|...|..+++..
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 379
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=71.90 E-value=9.2 Score=20.06 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTE----LGDLERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~----~g~~~~A~~~y~~al~ 240 (245)
.+.+.+|.+|.. ..|.++|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 356677777753 2378888888888765
No 380
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.64 E-value=21 Score=32.60 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
-+.+++.|.+|+..++..-+. ....-|..+|-.+++.++|.+|+..+.+|-+...+.+.
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY 353 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNY 353 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB-
T ss_pred CCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345677888888877764432 23445677888899999999999999998777665443
No 381
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=71.37 E-value=29 Score=31.63 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC---CCHHHHHHHHHH
Q 025965 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---QDLEKAFTEFKA 157 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~~ 157 (245)
.++...+++........-..++..|.+++.+.+.+ .+.+.+.+.++... |+--.|+.....
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~----------------~~~l~nraa~lmkRkW~~d~~~AlrDch~ 436 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA----------------IYLLENRAAALMKRKWRGDSYLALRDCHV 436 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch----------------hHHHHhHHHHHHhhhccccHHHHHHhHHh
Confidence 33444444444444445566777788888777652 33444445555443 456677777888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199 (245)
Q Consensus 158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al 199 (245)
|+++.+. ...+++.|+.++...+++.+|+.....+.
T Consensus 437 Alrln~s------~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 437 ALRLNPS------IQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred hccCChH------HHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 8888887 88899999999999999999999765543
No 382
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.23 E-value=52 Score=30.28 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=68.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHcCCcchHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM-VLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~-al~~~~~~~d~~~~~~a~~ 216 (245)
+...+...++...+......++...++ .+.+..++|.+....|....++..+.+ +.........-.+....++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPE------NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcc------cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 677777788888888888888888777 788889999988777777666666555 4444111111111111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 217 AIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+|.....+|...++..+..++.+...
T Consensus 147 ~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 147 QLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 368888888998888888888877543
No 383
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.11 E-value=8.4 Score=19.28 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 215 YGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
|..+=..|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4556666777777777777776654
No 384
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=70.76 E-value=13 Score=19.98 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=17.2
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHH
Q 025965 213 EAYGAIA--DCYTELG-----DLERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la--~~y~~~g-----~~~~A~~~y~~al~ 240 (245)
.+.+++| .+|..-. |.++|.++|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4566667 4444322 46788888887754
No 385
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.68 E-value=13 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+...|.-.-..|+|++|+..|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555566666677777777666554
No 386
>PF12854 PPR_1: PPR repeat
Probab=70.41 E-value=12 Score=19.87 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
...|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34677777788888888888877764
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.22 E-value=74 Score=27.74 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHH------
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG--LGASLQRQGKYREAIKYHSMVLQISER------ 204 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~--lg~~~~~~g~~~~Ai~~~~~al~~~~~------ 204 (245)
......+...+..++|..|...+....+- +.+... ...+.. .|..++..-++++|.+.+++.+.....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~ 207 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE 207 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence 34556778889999999999999987763 333222 233444 455568889999999999977653221
Q ss_pred -c--------------C--CcchHH---HHHHHHHHHH------HHcCCHHHHHHHHHHHHHHh
Q 025965 205 -E--------------G--EYSGST---EAYGAIADCY------TELGDLERAARFYDKYISRL 242 (245)
Q Consensus 205 -~--------------~--d~~~~~---~a~~~la~~y------~~~g~~~~A~~~y~~al~~~ 242 (245)
. . +..... ..+..++.++ ...|+|+.|.-.+=++++.+
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 0 000000 0333444444 35888999998888888765
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=70.02 E-value=18 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=11.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
.|.-.-..|++++|+.+|.+|++..
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444444455555555555544433
No 389
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=69.49 E-value=36 Score=26.64 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965 156 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y 235 (245)
++++.+.+. ...+.+.+......|++++|...++++.+..++...........++-|.+-..+.+|-+|...|
T Consensus 20 EE~l~lsRe-------i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 20 EEALKLSRE-------IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLY 92 (204)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHH
Confidence 455556554 4456667777889999999999999998887765533222223333344444445566665554
Q ss_pred H
Q 025965 236 D 236 (245)
Q Consensus 236 ~ 236 (245)
.
T Consensus 93 ~ 93 (204)
T COG2178 93 S 93 (204)
T ss_pred H
Confidence 3
No 390
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.04 E-value=76 Score=27.44 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-----------------------hHHHHHHHHHHHHHHHHcCC
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----------------------PIEEKKAARGLGASLQRQGK 187 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-----------------------~~~~~~a~~~lg~~~~~~g~ 187 (245)
.+.+++.++.++..+|++..|.+..++|+=..+..-. -...-.++........+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4557888899999999999999999999865553111 11122445566778889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcch-HH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 188 YREAIKYHSMVLQISEREGEYSG-ST-EAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~~d~~~-~~-~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
+..|+++.+-.+.+ +|. ++ .+.+.|-......++++--++.++..
T Consensus 119 ~rTAlE~~KlLlsL------dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 119 WRTALEWCKLLLSL------DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHHHhc------CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 99999999999888 443 33 33444444445667776555555543
No 391
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.82 E-value=63 Score=28.88 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 155 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199 (245)
Q Consensus 155 ~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al 199 (245)
++.|++++..+.+ ...+..||.....+|+++-|.+.|.++-
T Consensus 334 L~~A~~~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 334 LDIALEIAKELDD----PEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 4445555544433 3367889999999999999999988753
No 392
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=68.46 E-value=20 Score=22.97 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+..+...|.-.-..|++++|+.+|..|++..-.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344555677788889999999999999887654
No 393
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=68.21 E-value=32 Score=23.91 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 161 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l 161 (245)
+....+..|...+..||+..|.....++-+.
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4445666799999999999999999998654
No 394
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=68.17 E-value=14 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 215 YGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
|+.+=..|.+.|++++|.+.|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555667777777777777766543
No 395
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=68.09 E-value=13 Score=37.46 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
.++..-.+|..+...|++.+|+..|.+|+..++..+|..+.+.|+..++.+..-
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l 294 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLL 294 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHH
Confidence 455666799999999999999999999999999999999999999988877654
No 396
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.94 E-value=19 Score=23.39 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+...|.-.-..|+|++|+..|.++++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344556666677778888888888887665
No 397
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.26 E-value=14 Score=35.20 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 153 TEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 153 ~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
..|.-|+.+++....... ...+....|.-++..|++++|+.+|.++|..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 467788888888777777 4566777888888888888888888887766
No 398
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.23 E-value=91 Score=26.90 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------------------------hHHHHHHHHHHHHHHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------------------------PIEEKKAARGLGASLQ 183 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------------------------~~~~~~a~~~lg~~~~ 183 (245)
...--+..|.+++..++|.++...+..+-+-.+.-.| .....-....+|..|.
T Consensus 57 ~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm 136 (449)
T COG3014 57 ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYM 136 (449)
T ss_pred HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHH
Confidence 4555667788888888888877665544332222111 1112233445677777
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 025965 184 RQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 184 ~~g~~~~Ai~~~~~al~~ 201 (245)
+..|++.|.-.|+++...
T Consensus 137 ~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 137 LLNDSAKARVEFNRANER 154 (449)
T ss_pred HhcchhhhHHHHHHHHHH
Confidence 777777777777776554
No 399
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=65.18 E-value=29 Score=22.51 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALEL 161 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l 161 (245)
.....|.-.-..|+|++|...|..+++.
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 400
>PF13041 PPR_2: PPR repeat family
Probab=64.73 E-value=19 Score=20.79 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
..|+.+=..|.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3566677778888888888888877664
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.63 E-value=96 Score=26.64 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 181 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 181 ~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..+.+|.++|+++.++.++-......+.........+|+++...||.+++.+..+..-+..
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~l 145 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSML 145 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34556799999999999988877666555667778889999999999999998887665543
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.63 E-value=63 Score=26.06 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHc
Q 025965 149 EKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASL-QRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 149 ~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~-~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
++|...|++|++++.. +. +|....-++ |.+..+ -..|+.++|+...++|++-+...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~L-N~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLAL-NYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHH-HHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 6788899999999988 43 444444444 445554 55999999999999998887653
No 403
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.20 E-value=27 Score=24.59 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
.+..++..||+-+|++..+..+.. .+++...+..+...|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~---h~~~~~~~~lh~~QG~if~~l 46 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR---HGEDESSWLLHRLQGTIFYKL 46 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH---ccCCCchHHHHHHHhHHHHHH
Confidence 355678889999999999998765 333443345566667776543
No 404
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.81 E-value=45 Score=28.80 Aligned_cols=67 Identities=25% Similarity=0.301 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-C-hHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-D-PIEEKKAARGLGASLQRQGKYREAIKY 194 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-d-~~~~~~a~~~lg~~~~~~g~~~~Ai~~ 194 (245)
....+..++..|+-.+.++++++|...|..|..+...+. + +.....+++..|.+++..++....+-.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666777889999999999999999999999988753 2 233556677778888877776665443
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.27 E-value=70 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
...+.+++.++...|+.++|.....++..+
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555566666666666665555555555
No 406
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.24 E-value=1.1e+02 Score=26.98 Aligned_cols=64 Identities=16% Similarity=-0.023 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHH
Q 025965 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE 190 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~ 190 (245)
.+...+.-.+++|.+...+++|..|.+++-+|+..+|....-.....+.-.+-.+-.-+|++.+
T Consensus 242 snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 242 SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPE 305 (493)
T ss_pred ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcc
Confidence 3446777888899999999999999999999999888622222222222223333444566554
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.06 E-value=83 Score=25.38 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=60.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH--HHH
Q 025965 143 LRNQDLEKAFTEFKAALELAQNVKD------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEA 214 (245)
Q Consensus 143 ~~~g~~~~A~~~~~~al~l~~~~~d------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~--~~a 214 (245)
+..|+|+.|++...-|++..-.+.+ +...++-...-+......|..-+. .+......+ ....|-|.. +.-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l-~~~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDL-TTEWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHH-HhcCCCChHHHHHH
Confidence 5679999999999999987554433 222344444555556666653221 123333333 334454544 444
Q ss_pred HHHHHHHH---------HHcCCHHHHHHHHHHHHHHh
Q 025965 215 YGAIADCY---------TELGDLERAARFYDKYISRL 242 (245)
Q Consensus 215 ~~~la~~y---------~~~g~~~~A~~~y~~al~~~ 242 (245)
|-..|..+ ...++.+.|..++++|++.-
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Confidence 66667766 34568889999999998864
No 408
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=61.43 E-value=21 Score=18.24 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.|..+-.++.+.|+.+.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666777777777777777766543
No 409
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=61.29 E-value=41 Score=21.56 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
....+..+...|..+-..|++++|+.+|.++++....
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455666667777777888888888888888776655
No 410
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.11 E-value=69 Score=27.20 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHHH
Q 025965 186 GKYREAIKYHSMVLQ 200 (245)
Q Consensus 186 g~~~~Ai~~~~~al~ 200 (245)
++|++|+.+|..+++
T Consensus 24 ~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 24 KNYEEALRLYQNALE 38 (439)
T ss_pred hchHHHHHHHHHHHH
Confidence 344444444444433
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.24 E-value=82 Score=25.82 Aligned_cols=89 Identities=24% Similarity=0.308 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHcCCcchHHHHHHHHHH
Q 025965 152 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV-----------LQISEREGEYSGSTEAYGAIAD 220 (245)
Q Consensus 152 ~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a-----------l~~~~~~~d~~~~~~a~~~la~ 220 (245)
....++|++..+.-+.+.+.+..+.-+|..+++.|++.+|..+|-.+ +......+ .+...+.+...|.
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~-~~~e~dlfi~RaV 148 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKG-YPSEADLFIARAV 148 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHT-SS--HHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-CCcchhHHHHHHH
Confidence 34566777777555566667888888999999999999999888421 11111122 2333445555544
Q ss_pred H-HHHcCCHHHHHHHHHHHHHH
Q 025965 221 C-YTELGDLERAARFYDKYISR 241 (245)
Q Consensus 221 ~-y~~~g~~~~A~~~y~~al~~ 241 (245)
. |...|+...|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4 67889999999888777665
No 412
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.92 E-value=59 Score=29.02 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....|..+|......|+++-|.++|+++-+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 456899999999999999999999988643
No 413
>COG3162 Predicted membrane protein [Function unknown]
Probab=58.72 E-value=48 Score=22.77 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHHhhchhHHhhHHHHHHHHHHHH
Q 025965 55 FNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLR 90 (245)
Q Consensus 55 ~~~~~~~~i~l~g~~~~~l~~~~~~~~~~~l~~~~~ 90 (245)
+.+++++.+.+.+-+++++.....+.+.|+++..+.
T Consensus 62 ~Gip~gvg~fv~tfVlt~IYv~rAn~~fDrl~~~i~ 97 (102)
T COG3162 62 RGIPFGVGVFVMTFVLTGIYVRRANGEFDRLNAEIL 97 (102)
T ss_pred hhHhHHHHHHHHHHHHHHHHhhHhhccchHHHHHHH
Confidence 345555555566556677776666666677766544
No 414
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.51 E-value=11 Score=32.15 Aligned_cols=61 Identities=20% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
..+.+.+-...+++..|......+++..++ ...+++..|..+....++++|+..++.+...
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERS------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChh------hCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 334667777788888888877766663333 7788999999999999999999999998766
No 415
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.77 E-value=35 Score=32.71 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAA 158 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 158 (245)
........|...+..|++++|...|-++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t 394 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIET 394 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445556788889999999999988874
No 416
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=57.74 E-value=1e+02 Score=25.08 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHHHh-C--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025965 130 EELLSRLKTGKNFLRN-----QD-----LEKAFTEFKAALELAQN-V--KDPIEEKKAARGLGASLQRQGKYREAIKYHS 196 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~-----g~-----~~~A~~~~~~al~l~~~-~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~ 196 (245)
.++.-+-..|..|... |+ -++|...|++|.+++.. + .+|.....+++.--..|--+++.++|+...+
T Consensus 116 skVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk 195 (244)
T smart00101 116 SKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAK 195 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444566666443 22 34778899999999875 3 3455455444433333445799999998888
Q ss_pred HHHHHHH
Q 025965 197 MVLQISE 203 (245)
Q Consensus 197 ~al~~~~ 203 (245)
++.+-+-
T Consensus 196 ~afd~Ai 202 (244)
T smart00101 196 QAFDEAI 202 (244)
T ss_pred HHHHHHH
Confidence 8776654
No 417
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.69 E-value=85 Score=23.77 Aligned_cols=65 Identities=14% Similarity=-0.064 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....++..+..+-...++.+++...+.-.--+ .|.....-..-|..+...|++++|...++...+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 35566777777778888999888877665555 788888888889999999999999999987644
No 418
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=74 Score=26.29 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
++=..+...++++.|...-++.+.+.|. ...-....|.+|.+.|.+.-|++.+...++.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 4556778889999999999999999887 6666788999999999999999999987666
No 419
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.65 E-value=28 Score=33.49 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
.-..+..-+..+...++|..|-++|-+
T Consensus 388 le~Vl~~qAdf~f~~k~y~~AA~~yA~ 414 (911)
T KOG2034|consen 388 LETVLLKQADFLFQDKEYLRAAEIYAE 414 (911)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333344444444444444444444443
No 420
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.43 E-value=1.2e+02 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...+..+|.+....|...+|++.|-+| |+| ..|...-++....|.|++-..|+..|-+..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 345678899999999999999999875 343 467777788889999999999988876654
No 421
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=51.90 E-value=1.7e+02 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.022 Sum_probs=45.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
--...|+.+-|..|-+.+-+.++. ..++....-...+..|+++.|+.........
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ------LPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC------CchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345689999999999999999998 7777776667788899999999988765443
No 422
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.44 E-value=78 Score=23.35 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025965 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 229 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~ 229 (245)
.....+......|+|.-|.+....++.. +|....+....+.+|..+|.-.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~a------dp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFA------DPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHHHhc
Confidence 3445566778899999999999999887 7777788888899888877543
No 423
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.00 E-value=77 Score=28.71 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
.+.+....|+|+.|......+-..... ++.. ..-+-......|++++|.....-.+. |.-...+...-
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~-----~~~~~r~~~~l~r~~~a~s~a~~~l~------~eie~~ei~~i 396 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGT-TDST-----LRCRLRSLHGLARWREALSTAEMMLS------NEIEDEEVLTV 396 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcC-CchH-----HHHHHHhhhchhhHHHHHHHHHHHhc------cccCChhheee
Confidence 477788889888888766544332222 2222 22223345566788887765544322 22222333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 218 IADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 218 la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
-|.....+|-+|+|..++++.+.+
T Consensus 397 aa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ecccHHHHhHHHHHHHHHHHHhcc
Confidence 344555667778888888777654
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.98 E-value=1.6e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 200 (245)
Q Consensus 168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~ 200 (245)
..-....-+.++.+.+++|+..+|++.++...+
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 333445567899999999999999999987644
No 425
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.73 E-value=1.1e+02 Score=27.19 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
+.+..+.|.++-..+++++|+.+|+++|.+..+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 445567777788888888888888888877665
No 426
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.36 E-value=2.1e+02 Score=26.25 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965 154 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 154 ~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
.+.+.+.+.++ .-+++.++.+|... ..++=...+++..+. +-+....-..++..|.. ++.+++..
T Consensus 88 ~c~~~l~~~e~-------kmal~el~q~y~en-~n~~l~~lWer~ve~------dfnDvv~~ReLa~~yEk-ik~sk~a~ 152 (711)
T COG1747 88 LCTRVLEYGES-------KMALLELLQCYKEN-GNEQLYSLWERLVEY------DFNDVVIGRELADKYEK-IKKSKAAE 152 (711)
T ss_pred HHHHHHHhcch-------HHHHHHHHHHHHhc-CchhhHHHHHHHHHh------cchhHHHHHHHHHHHHH-hchhhHHH
Confidence 46676666553 56788888888777 556666777776666 45555555667777776 88899999
Q ss_pred HHHHHHHHh
Q 025965 234 FYDKYISRL 242 (245)
Q Consensus 234 ~y~~al~~~ 242 (245)
+|.+++.++
T Consensus 153 ~f~Ka~yrf 161 (711)
T COG1747 153 FFGKALYRF 161 (711)
T ss_pred HHHHHHHHh
Confidence 999998765
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.10 E-value=1.8e+02 Score=25.34 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---
Q 025965 88 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN--- 164 (245)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--- 164 (245)
+........++..+...+.......+ +.........+-.|..++...++.+|.+.++..+.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~------------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~ 204 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLP------------GREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQ 204 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC------------chhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHh
Confidence 34444444455665555555444311 111134555666788899999999999988866653211
Q ss_pred ------------------------CC----C-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 165 ------------------------VK----D-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 165 ------------------------~~----d-~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.. + .......+...+.=-...|+|+.|+..+-+++++..+
T Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 205 EREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00 0 1112222333333345689999999999999988765
No 428
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=49.07 E-value=1.1e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 210 GSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
..+..+.-+|.+|.+.|+..+|.+...+|-+
T Consensus 118 ~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3456677788888888888888877777654
No 429
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=48.54 E-value=1.5e+02 Score=24.18 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH
Q 025965 172 KKAARGLGASLQRQ---GKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADC-YTELGDLERAARFYDKYISR 241 (245)
Q Consensus 172 ~~a~~~lg~~~~~~---g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~-y~~~g~~~~A~~~y~~al~~ 241 (245)
+..++.++.+.... .--+.|...|++|++++.+. ..+|-......|.+.. |.-+++.++|.+.-+++++-
T Consensus 125 GDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 125 GDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666553211 12568999999999997752 2244444445555554 45679999998776666653
No 430
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=47.81 E-value=1.2e+02 Score=23.86 Aligned_cols=74 Identities=27% Similarity=0.267 Sum_probs=46.1
Q ss_pred HHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFL-----RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-------YREAIKYHSMVLQI 201 (245)
Q Consensus 134 ~~~~~g~~~~-----~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-------~~~Ai~~~~~al~~ 201 (245)
+.+..|..+. ..++...|++.++.+-+ .+ .+.+..++|.+...-.. ..+|.+++.++-++
T Consensus 70 SCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n------~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 70 SCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--AN------IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred HHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cC------CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 4555555443 34678899999998876 23 56788888888765433 45666777666433
Q ss_pred HHHcCCcchHHHHHHHHHHHHH
Q 025965 202 SEREGEYSGSTEAYGAIADCYT 223 (245)
Q Consensus 202 ~~~~~d~~~~~~a~~~la~~y~ 223 (245)
+...+-+++...|.
T Consensus 142 --------~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 142 --------EDGEACFLLSTMYM 155 (248)
T ss_pred --------CCchHHHHHHHHHh
Confidence 22344555555554
No 431
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.39 E-value=2.1e+02 Score=25.63 Aligned_cols=109 Identities=9% Similarity=-0.034 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-----HHHHHHHHHHHHHHcCCH---HHH-------HHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-----EKKAARGLGASLQRQGKY---REA-------IKYHSMV 198 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-----~~~a~~~lg~~~~~~g~~---~~A-------i~~~~~a 198 (245)
.+...|.+......|++|......|-+.+-....... .+-....+-++|++..+. +.| -+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3345677778888888888876666555543222111 112223455667666652 223 2222222
Q ss_pred H-----HHHH-HcCCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 199 L-----QISE-REGEYSGS---TEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 199 l-----~~~~-~~~d~~~~---~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
. ++.. +.++.|.. ...+..-|.+.+.+|+.++|.++++.+...+
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1 1110 12344433 3345567999999999999999999987755
No 432
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.23 E-value=75 Score=20.37 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
..|.-.-..|+|++|+.+|.++++.+..
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3445566779999999999999988765
No 433
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=47.21 E-value=1.4e+02 Score=23.36 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
...+.-..+...++++.|.......-++...-.+........+.-|...+..|+..++....++++++.+..|.
T Consensus 130 il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~ 203 (220)
T TIGR01716 130 LLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGY 203 (220)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence 44445556667778888887777654444221233334444555666677888888888889999998887664
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.65 E-value=2.1e+02 Score=24.78 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--------------C---------CcchHHHHHHHHHHHHHHcCC
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--------------G---------EYSGSTEAYGAIADCYTELGD 227 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--------------~---------d~~~~~~a~~~la~~y~~~g~ 227 (245)
...++..++.++..+|++..|.+..++|+=.++.. | ++.....+.+........+|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 67889999999999999999999999998665531 0 122344456666777789999
Q ss_pred HHHHHHHHHHHHHH
Q 025965 228 LERAARFYDKYISR 241 (245)
Q Consensus 228 ~~~A~~~y~~al~~ 241 (245)
+..|.++.+-.+..
T Consensus 119 ~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 119 WRTALEWCKLLLSL 132 (360)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988776654
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.46 E-value=78 Score=19.52 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 215 YGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+...-..|...|++++|.+|.++..+..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3344445667777777777777666543
No 436
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=42.40 E-value=2.2e+02 Score=24.42 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhCCC-----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 150 KAFTEFKAALELAQNVKD-----------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 150 ~A~~~~~~al~l~~~~~d-----------------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
++.++|++|.....+.++ ....+.+++..|......+++.+|+.+++.|.+..++.
T Consensus 214 ~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~ 286 (346)
T cd09247 214 GATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKK 286 (346)
T ss_pred HHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 344577777776654331 12244567788888888899999999999998865543
No 437
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=42.30 E-value=3.3e+02 Score=26.38 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCCHH-HHHH-HHHHHHHHHHHcCCcc
Q 025965 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGKYR-EAIK-YHSMVLQISEREGEYS 209 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~d~~~~~~a~~~lg~~~~~~g~~~-~Ai~-~~~~al~~~~~~~d~~ 209 (245)
..++.-|.+....+--+-|.++|.+|..+++ ++.|......+...+..+..+...+. +-.+ .-.++-..+.+.-..+
T Consensus 593 kL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~ 672 (762)
T PF03635_consen 593 KLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKP 672 (762)
T ss_dssp HHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHH
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcH
Confidence 3444445555555544457778999999998 67888888888777666665554432 2222 2223334444445578
Q ss_pred hHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHhh
Q 025965 210 GSTEAYGAIADCYTELG----------DLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g----------~~~~A~~~y~~al~~~~ 243 (245)
+...+.+.-+..++..+ |-++..++.++++++++
T Consensus 673 DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAd 716 (762)
T PF03635_consen 673 DQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIAD 716 (762)
T ss_dssp HHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHH
Confidence 88888888888887543 67889999999999875
No 438
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.56 E-value=2.4e+02 Score=24.41 Aligned_cols=112 Identities=16% Similarity=0.062 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHH--------
Q 025965 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--QRQGKYREAIKYHSMV-------- 198 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~--~~~g~~~~Ai~~~~~a-------- 198 (245)
-......++.|..|....|++.|...++++.+.-+..+...... .--+....- -...+++..+..-.++
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~e-i~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny 200 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEE-VQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNY 200 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 34566777899999999999999999988877655422211110 000111110 0111222222222221
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..++... +...+.+-+.-|..|.-.|++-++..++..+.-+.
T Consensus 201 ~~~yea~~-~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~ 243 (449)
T COG3014 201 LDKYEAYQ-GLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGIS 243 (449)
T ss_pred HHHHHhhc-ccchHHHHHHHHHhcccCccHhHHHHHHHHHhccC
Confidence 22222222 23344555556777777778888888877765543
No 439
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=1.1e+02 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.++.....|.+|-..+++++|+.+|++++.+..+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999999999999998765
No 440
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=40.21 E-value=95 Score=21.75 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965 212 TEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+......|..|...||.++|.-+|-+.+.++
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445667888888888888888888887765
No 441
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=40.08 E-value=2.9e+02 Score=25.39 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 175 ARGLGASLQRQGKYREAIKYHSMVLQISER------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~------~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
-++++.-+...|.-.++++++.-+..-.+. ...-+.....|..+..+|...|.+++|.....+++...+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~ 228 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKID 228 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 346677777889999999988665333222 133456778899999999999999999999999987654
No 442
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.19 E-value=2.8e+02 Score=30.38 Aligned_cols=68 Identities=12% Similarity=-0.088 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....++++...+.+.+..|+++.|-.+.-+|.+. . .+.++.-.|......||-.+|....++.++...
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~------r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES------R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc------c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4557889999999999999999999999888655 2 567888899999999999999999999987653
No 443
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.72 E-value=1.7e+02 Score=25.43 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CC-cchHHHHHHHHHHHHHHcCCHHHHH
Q 025965 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GE-YSGSTEAYGAIADCYTELGDLERAA 232 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d-~~~~~~a~~~la~~y~~~g~~~~A~ 232 (245)
..-+...|.-.+.+++++.|...|..|..++.+. |+ ......+++..|.++...++.+...
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446678888999999999999999999887764 23 3457788888999999888776554
No 444
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=38.67 E-value=1.3e+02 Score=20.77 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 227 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~ 227 (245)
.....-|......||+..|.+...++-+. .+.....|..-+++-...||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~------~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKL------SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHcCC
Confidence 33445677788889999999999998544 23334455555666666665
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.47 E-value=99 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHHHhCCChHHHHH
Q 025965 127 PKKEELLSRLKTGKNFL---------RNQDLEKAFTEFKAALELAQNVKDPIEEKK 173 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~---------~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 173 (245)
++...+..+...|..+. ..++...|..++++|+++.+++|-......
T Consensus 164 pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~ 219 (230)
T PHA02537 164 PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIER 219 (230)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 45556666667788773 456788999999999999988776665443
No 446
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.18 E-value=5.9e+02 Score=28.16 Aligned_cols=108 Identities=15% Similarity=0.051 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
+..-...++..|.+....|.++.|..+.-.|.+.. ...++...+...+.+|+-..|+.++++.++.......
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 34456678888999999999999999888876643 4677888999999999999999999999966543311
Q ss_pred c-----c------hHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhh
Q 025965 208 Y-----S------GSTEAYGAIADCYTELGDL--ERAARFYDKYISRLE 243 (245)
Q Consensus 208 ~-----~------~~~~a~~~la~~y~~~g~~--~~A~~~y~~al~~~~ 243 (245)
. | ....+...++....+.|++ +.-.++|..+.+...
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1 1 1122444555555556653 345677777776553
No 447
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.51 E-value=74 Score=30.26 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--QRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~--~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
....-|+..+..+++..+..-|..++.+.|. +..-......+.+.++ ...|+|..++....-++.. .|..
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~------~p~i 126 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES------QPRI 126 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccc--cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc------cchH
Confidence 3334578888888999998888888887772 2222334444444444 5578899999988888877 8888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 025965 212 TEAYGAIADCYTELGDLERAARF 234 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~ 234 (245)
..++.-.+.+|...+..+-|.+.
T Consensus 127 ~~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 127 SKALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Confidence 88888888999888887777766
No 448
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=35.42 E-value=2.3e+02 Score=25.05 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.+.+++.+|......+++.+||.+++.|....+.
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~ 328 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELED 328 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHH
Confidence 4567888888888999999999999999886443
No 449
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=35.37 E-value=2.5e+02 Score=23.65 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 179 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 179 g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+......+..++|+..++..+.- .............+++++...|.++-|...|....+..+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~---~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQ---AREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 44556677788888877765433 222345566677789999999999999999988876554
No 450
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.26 E-value=1.1e+02 Score=23.41 Aligned_cols=30 Identities=17% Similarity=-0.059 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+.++..+|+.++|.....++..++|
T Consensus 146 ~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 146 VYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344556666666666666666666666655
No 451
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=34.66 E-value=1.3e+02 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 025965 209 SGSTEAYGAIADCYTELG-----DLERAARFYDKYIS 240 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g-----~~~~A~~~y~~al~ 240 (245)
....-++..++++|...+ ++++|.++.+++++
T Consensus 173 ~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 173 AWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 355667888899999999 89999999988875
No 452
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.01 E-value=1.2e+02 Score=21.81 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
.+|+.+...|++++|..+|-+|+.++
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 46677777788888888888888773
No 453
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.03 E-value=2.1e+02 Score=21.46 Aligned_cols=64 Identities=13% Similarity=-0.045 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....+......-...++.+++...+.-.--+ .|.....-..-|..+...|++++|...++...+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL------RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3334444444555588888887766554444 677777777789999999999999998877654
No 454
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=31.58 E-value=2.8e+02 Score=23.48 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhCCC------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 150 KAFTEFKAALELAQNVKD------------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 150 ~A~~~~~~al~l~~~~~d------------------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
++..+|++|.+....... ....+.+++..|......+++.+|+.+++.|....+.
T Consensus 211 ~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 211 EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 345567777766554332 1234556777888888888899999999888876554
No 455
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=31.53 E-value=3e+02 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
..+.+++..|......+++.+|+..++.|.+..++
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 34566788888888888999999999998876554
No 456
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.35 E-value=4.3e+02 Score=24.49 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
.+........+..++....+++|....+.............-|.-++..++|++|.+.-..|++..++
T Consensus 484 ~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~veP 551 (569)
T PRK04778 484 DVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEP 551 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCC
Confidence 34444555566677777777777775555444445556667777777999999999998888887664
No 457
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.21 E-value=1.2e+02 Score=29.49 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=13.0
Q ss_pred HHHHHHCCCHHHHHHHHH
Q 025965 139 GKNFLRNQDLEKAFTEFK 156 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~ 156 (245)
=.+|...|+|++|.+..+
T Consensus 365 Wk~yLd~g~y~kAL~~ar 382 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIAR 382 (911)
T ss_pred HHHHHhcchHHHHHHhcc
Confidence 457788888888877543
No 458
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=29.86 E-value=3.3e+02 Score=23.36 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.+.+++..|......+++.+|+..++.|.+..++
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 3455667777778888999999999998877654
No 459
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=29.48 E-value=1.3e+02 Score=26.09 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHcC-----------CcchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhh
Q 025965 189 REAIKYHSMVLQISEREG-----------EYSGSTEAYGAIADCYTEL---------GDLERAARFYDKYISRLE 243 (245)
Q Consensus 189 ~~Ai~~~~~al~~~~~~~-----------d~~~~~~a~~~la~~y~~~---------g~~~~A~~~y~~al~~~~ 243 (245)
..|+.+|+.-++.++... +......++..+|++|.+. +...++..+|+..++..+
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~ 340 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCE 340 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777766322 1124566899999999766 456788888888877664
No 460
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=29.06 E-value=3.4e+02 Score=25.12 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965 140 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 219 (245)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la 219 (245)
...-...+...+....+++++.................-+.-+++.++|++|++....|++-. .|+ ++-.+-
T Consensus 487 ~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~v-----ePG---~~~ri~ 558 (569)
T PRK04778 487 TLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKV-----EPG---VTKRIE 558 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhh-----CCc---HHHHHH
Confidence 333444556667777777887766666655566666777778889999999999999988763 343 566666
Q ss_pred HHHHHc
Q 025965 220 DCYTEL 225 (245)
Q Consensus 220 ~~y~~~ 225 (245)
..|...
T Consensus 559 ~~y~~~ 564 (569)
T PRK04778 559 DSYEKE 564 (569)
T ss_pred HHHHhc
Confidence 666643
No 461
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.84 E-value=41 Score=32.96 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~ 221 (245)
..++...+|..+.-.|.+..|++.|..||+..+..+|..+.+.++-....|
T Consensus 244 LGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC 294 (1235)
T KOG1953|consen 244 LGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVC 294 (1235)
T ss_pred HHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHH
Confidence 556666778888888888889999999988888888877666665543333
No 462
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=28.41 E-value=1.7e+02 Score=28.35 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965 214 AYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.+..-+.+|...|++.+|...|+.|.
T Consensus 937 ~~~~aa~aye~~gK~~Ea~gay~sA~ 962 (1243)
T COG5290 937 YHISAAKAYEVEGKYIEAHGAYDSAL 962 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777776664
No 463
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.15 E-value=1e+02 Score=28.67 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 213 EAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.-+..+|++....|++..|.+++.++-+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3566788888888888888888887754
No 464
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.01 E-value=5.2e+02 Score=24.44 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=36.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965 183 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 183 ~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
...++++....++... ... ........|-+|+++...|+.++|..+|+++..
T Consensus 323 l~~~dw~~~~~~i~~L---~~~---~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 323 LGTGDRRGLNTWLARL---PME---AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHccCHHHHHHHHHhc---CHh---hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3667777666666552 111 123456788899999999999999999998743
No 465
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=27.70 E-value=2.2e+02 Score=19.89 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
..+...+..|..|...||.+.|.-.|.+...+...
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888888888888887743
No 466
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.45 E-value=3.8e+02 Score=22.63 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCH
Q 025965 149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 228 (245)
Q Consensus 149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~ 228 (245)
+.-+..+++|++..+. .......+=.......+.++...-+++++.. ..+.+.....|...-..-...-.+
T Consensus 48 E~klsilerAL~~np~------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 48 ERKLSILERALKHNPD------SERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcH
Q ss_pred HHHHHHHHHHHHHhh
Q 025965 229 ERAARFYDKYISRLE 243 (245)
Q Consensus 229 ~~A~~~y~~al~~~~ 243 (245)
+.....|.++++.+.
T Consensus 119 ~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 119 SDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHHHHHHHHHH
No 467
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=27.34 E-value=1.7e+02 Score=23.65 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
....-+=..+.-.|+|++|...++-+-.+
T Consensus 36 ~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 36 GGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred cchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 33444555555556666666555555444
No 468
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.19 E-value=3.8e+02 Score=27.39 Aligned_cols=64 Identities=27% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH------HHcCC----HHHHHHHHHHHHHHHHHc
Q 025965 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL------QRQGK----YREAIKYHSMVLQISERE 205 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~------~~~g~----~~~Ai~~~~~al~~~~~~ 205 (245)
..+|.+|...|+..+|+..|.+|..-..+ ..++..+-.-. ...|+ -..|+.||.+++++.++.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge-------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~h 996 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGE-------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEH 996 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhcccc-------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 35688899999999999999998763322 12333221110 12333 233677888888877765
Q ss_pred C
Q 025965 206 G 206 (245)
Q Consensus 206 ~ 206 (245)
+
T Consensus 997 n 997 (1480)
T KOG4521|consen 997 N 997 (1480)
T ss_pred c
Confidence 4
No 469
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.15 E-value=4.2e+02 Score=24.29 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 025965 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~-~~~A~~~y~~al~~ 241 (245)
|.+--..|.+++.. +|..++.+..-|.--++.+. .+.|...+.++++.
T Consensus 121 ~~~v~ki~~~~l~~------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAK------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred hhHHHHHHHHHHHh------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 55555555555555 44444444444444333333 55555555555543
No 470
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.86 E-value=3e+02 Score=21.33 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....+.|.-..+...++++.|.......-.+.....+--......+.-|......|+.+++.+-.+++++.++
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 4556777777788888999998888876554321111112222333345444577876666666777766653
No 471
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.77 E-value=90 Score=15.21 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHHH
Q 025965 186 GKYREAIKYHSMVLQI 201 (245)
Q Consensus 186 g~~~~Ai~~~~~al~~ 201 (245)
|+.+.+-..|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4567777777777765
No 472
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=26.63 E-value=2.4e+02 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.+++..|......+++.+|+.+++.|.+.++
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~ 284 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLK 284 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 456778888888888999999999998887643
No 473
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.50 E-value=1.1e+02 Score=21.91 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
....+|..+...|++++|..+|-+|+.+++.
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4446899999999999999999999887765
No 474
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=25.92 E-value=3e+02 Score=24.94 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965 154 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 154 ~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
.+++++...+- ..+.++.........+|-+.|+...++++++ .|+ ....++.+|...+|-+.-..
T Consensus 290 ~~~q~~~y~~~------~~evw~dys~Y~~~isd~q~al~tv~rg~~~------sps---L~~~lse~yel~nd~e~v~~ 354 (660)
T COG5107 290 IHNQILDYFYY------AEEVWFDYSEYLIGISDKQKALKTVERGIEM------SPS---LTMFLSEYYELVNDEEAVYG 354 (660)
T ss_pred HHHHHHHHhhh------hHHHHHHHHHHHhhccHHHHHHHHHHhcccC------CCc---hheeHHHHHhhcccHHHHhh
Q ss_pred HHHHHHHHh
Q 025965 234 FYDKYISRL 242 (245)
Q Consensus 234 ~y~~al~~~ 242 (245)
+|+++++.+
T Consensus 355 ~fdk~~q~L 363 (660)
T COG5107 355 CFDKCTQDL 363 (660)
T ss_pred hHHHHHHHH
No 475
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=25.55 E-value=2.3e+02 Score=19.45 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=38.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
....|+..+|.+.-+...+...+....-..+.....-....| .+..+|.+++++ +...++......++..
T Consensus 20 As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg------~~L~~A~~~~~~----y~~t~~~~~l~~aW~~ 89 (100)
T PF08771_consen 20 ASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFG------RDLQEAREWLKR----YERTGDETDLNQAWDI 89 (100)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHH------HHHHHHHHHHHH----HHHH--HHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------HHHHHHHHHHHH----HhhhCCHhhHHHHHHH
Confidence 355677788888888888888877776333333332222222 344455555554 3333433333444444
Q ss_pred HHHHHHH
Q 025965 218 IADCYTE 224 (245)
Q Consensus 218 la~~y~~ 224 (245)
.-.+|.+
T Consensus 90 y~~v~~~ 96 (100)
T PF08771_consen 90 YYQVYRR 96 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 476
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.90 E-value=89 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965 191 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226 (245)
Q Consensus 191 Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g 226 (245)
|+...++|++..++..+ ...+..|.++|.+|..+|
T Consensus 330 a~~l~~~Al~yL~kA~d-~ddPetWv~vAEa~I~LG 364 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD-EDDPETWVDVAEAMIDLG 364 (404)
T ss_dssp HHHHHHHHHHHHHHHHH-S--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHhhhh
Confidence 45555566555554322 122334444555554444
No 477
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=24.88 E-value=5.7e+02 Score=23.80 Aligned_cols=105 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
.+..+..--.+|+++.|...+++..+-.+. ...+-..-....+++|+.+.+-..........+......-....
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg------~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEYPG------LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhCCc------hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcC
Q 025965 215 YGAIADC-YTELGDLERAARFYDKYISRLESD 245 (245)
Q Consensus 215 ~~~la~~-y~~~g~~~~A~~~y~~al~~~~~~ 245 (245)
+...+.. +.-.++.+.|...+.++++....+
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
No 478
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.47 E-value=7.8e+02 Score=25.25 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHhhhhhhhccc
Q 025965 99 QAKIESYAPSLSYA 112 (245)
Q Consensus 99 ~~~~~~~~~al~~~ 112 (245)
+..+.+|.+|+...
T Consensus 890 D~~L~ry~~AL~hL 903 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHL 903 (1265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 479
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=23.98 E-value=6.1e+02 Score=23.80 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHH
Q 025965 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-------YREAIKYHSMVLQISER 204 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-------~~~Ai~~~~~al~~~~~ 204 (245)
-......|......|++++|+..|.-|-+...- .......|+.+...... -++-+..-++.++.++.
T Consensus 414 ~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~v------l~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~ 487 (613)
T PF04097_consen 414 REIIEQAAREAEERGRFEDAILLYHLAEEYDKV------LSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKS 487 (613)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHh
Confidence 334445688888899999999988776655544 33344456666655444 11112222222222222
Q ss_pred cCC-----cc---hHHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 025965 205 EGE-----YS---GSTEAYGAIADC--YTELGDLERAARFYDK 237 (245)
Q Consensus 205 ~~d-----~~---~~~~a~~~la~~--y~~~g~~~~A~~~y~~ 237 (245)
.+. +. .....+..+... +...|++++|.+..++
T Consensus 488 ~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 488 NPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 110 11 223334445544 3578999999877654
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.22 E-value=2.7e+02 Score=19.44 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
-.+..||..|.+.|+.+.|...|+.--.+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 44566777777777777776666654333
No 481
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.05 E-value=2.9e+02 Score=19.84 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.1
Q ss_pred hhhhhhhc
Q 025965 103 ESYAPSLS 110 (245)
Q Consensus 103 ~~~~~al~ 110 (245)
+.|+..+.
T Consensus 42 ~~yk~~V~ 49 (128)
T PF06295_consen 42 EQYKQEVN 49 (128)
T ss_pred HHHHHHHH
Confidence 33444433
No 482
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.63 E-value=84 Score=27.82 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN-VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
++..+-+.+.-+||+.. -.+-+++.+. +..+.-.....+..|.+|.-+++|.+|+..|...+-.-++.
T Consensus 237 sL~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrt 305 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRT 305 (525)
T ss_pred HHHHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666788544 2233333332 23333344445789999999999999999999887665543
No 483
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.01 E-value=60 Score=31.92 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 025965 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL 182 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~ 182 (245)
.....|..+...|.+..|.++|..|+++.+..+|.-..+.++-+...+.
T Consensus 247 ~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC~ 295 (1235)
T KOG1953|consen 247 IEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVCL 295 (1235)
T ss_pred HHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHHH
Confidence 3345577788889999999999999999999999888888877644443
No 484
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=21.78 E-value=2.7e+02 Score=19.00 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+.+.+.-|.-..+.|+|++|....++|-+....
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~ 47 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSLNE 47 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4556666677778888888888888877664443
No 485
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=21.54 E-value=3.9e+02 Score=21.76 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
+....+.-++.++..+++.|++++|..++-.|+-+..+++.|..
T Consensus 109 ~A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P~H 152 (241)
T smart00770 109 NAKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGDLSTPYH 152 (241)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCccc
Confidence 34567777888999999999999999999999999888765443
No 486
>PRK11677 hypothetical protein; Provisional
Probab=21.42 E-value=3.4e+02 Score=19.89 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 025965 157 AALELAQN 164 (245)
Q Consensus 157 ~al~l~~~ 164 (245)
.+-++.|+
T Consensus 80 ~s~~Llp~ 87 (134)
T PRK11677 80 SSSELLPN 87 (134)
T ss_pred HHHHHccc
Confidence 34445454
No 487
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.39 E-value=2.1e+02 Score=17.62 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH--HHHHHHHHcCCHHHHHHH
Q 025965 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR--GLGASLQRQGKYREAIKY 194 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~--~lg~~~~~~g~~~~Ai~~ 194 (245)
.|...+..|+|=+|-+..+..-...+. +.......+. ..|....+.|+.+.|...
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~--~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPG--PERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-C--CHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCc--chHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 466777788888888887776542221 2222333333 344445677777777654
No 488
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=21.21 E-value=2.2e+02 Score=24.30 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
++...++.+++..|...-+.|..-+|+..|..|+++-++
T Consensus 13 d~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 13 DPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred chHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 566678888999999999999999999999999998877
No 489
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=21.20 E-value=3.4e+02 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 025965 170 EEKKAARGLGASLQRQG-----KYREAIKYHSMVLQ 200 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g-----~~~~Ai~~~~~al~ 200 (245)
...-+..-++.++...+ ++++|+.+.++++.
T Consensus 174 ~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 174 WKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 34556667888898888 89999999999886
No 490
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.93 E-value=4e+02 Score=24.51 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965 148 LEKAFTEFKAALELAQNVKDPIEEKKA-----------ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 148 ~~~A~~~~~~al~l~~~~~d~~~~~~a-----------~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
|+.-+..+..+.++-.--.|....... +..++.+|...++|.+|+..|.++....++..+......--.
T Consensus 387 Yd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l 466 (593)
T KOG2460|consen 387 YDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESL 466 (593)
T ss_pred HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcc
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 025965 217 AIADCYTELGDLERAARFYDKYISRLESD 245 (245)
Q Consensus 217 ~la~~y~~~g~~~~A~~~y~~al~~~~~~ 245 (245)
..-.+....-+.+++..-...++=...++
T Consensus 467 ~~~~~~eli~el~k~k~s~~a~~il~a~~ 495 (593)
T KOG2460|consen 467 LPLLLLELISELQKRKESLGAAVILLAEY 495 (593)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhcc
No 491
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.50 E-value=3.3e+02 Score=19.43 Aligned_cols=87 Identities=8% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
+.-..-...++++++...+..... .-.-+..+=..|...-+ ++.+.|+.... .+--...+.-|...|..+...
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~-nD~RylkiWi~ya~~~~--~~~~if~~l~~----~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYK-NDERYLKIWIKYADLSS--DPREIFKFLYS----KGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGT-T-HHHHHHHHHHHTTBS--HHHHHHHHHHH----HTTSTTBHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhc-CCHHHHHHHHHHHHHcc--CHHHHHHHHHH----cCccHHHHHHHHHHHHHHHHc
Confidence 444455567888887775432111 11122233333433333 66666665432 222344577888899999999
Q ss_pred CCHHHHHHHHHHHH
Q 025965 226 GDLERAARFYDKYI 239 (245)
Q Consensus 226 g~~~~A~~~y~~al 239 (245)
|++++|.+.|+++|
T Consensus 113 ~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 113 GNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999999875
No 492
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=20.19 E-value=2.5e+02 Score=22.30 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965 171 EKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
.++++...++++.+.|+..+|++++.+.
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~v 159 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQV 159 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6677777788888888777777766664
Done!