BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025969
         (245 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DXL|A Chain A, Crystal Structure Of Aed7 From Aedes Aegypti
 pdb|3DY9|A Chain A, Crystal Structure Of Aed7 Potassium Bromide Soak
 pdb|3DYE|A Chain A, Crystal Structure Of Aed7-norepineprhine Complex
 pdb|3DZT|A Chain A, Aed7-Leukotriene E4 Complex
          Length = 303

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 110 RTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEW-- 167
           RT  YDPV      +V     + YPS  ++  + +AY  A+K+ P      A   + +  
Sbjct: 57  RTGLYDPVAQKFDASVIQEQFKAYPSLGEKSKV-EAYANAVKQLPSTNNDCAAVFKAYDP 115

Query: 168 ---ARGQTASSLVEFPSK--EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA 222
              A   T+ +L     +  +G  E L KDI ++      F  ++++  G  +  +L   
Sbjct: 116 VHKAHKDTSKNLFHGNKELTKGLYEKLGKDIRQKKQSYFEFCENKYYPAGSDKRQQLCQI 175

Query: 223 TEPTVLEKVI 232
            + TVL+  +
Sbjct: 176 RQYTVLDDAL 185


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,354,740
Number of Sequences: 62578
Number of extensions: 244577
Number of successful extensions: 590
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 1
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)