Query 025969
Match_columns 245
No_of_seqs 81 out of 83
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 21:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_N 50S ribosomal protein L 57.2 7.3 0.00025 31.4 3.0 78 134-212 12-101 (120)
2 2zjr_K 50S ribosomal protein L 54.4 8.6 0.0003 30.8 3.0 77 135-212 13-101 (116)
3 1gd8_A 50S ribosomal protein L 52.2 8.6 0.00029 30.8 2.7 77 135-212 13-101 (118)
4 2ou3_A Tellurite resistance pr 43.5 1.2E+02 0.004 23.9 8.4 86 131-240 43-131 (161)
5 3bbo_P Ribosomal protein L17; 40.9 9.9 0.00034 33.3 1.5 78 134-212 101-190 (205)
6 3kw6_A 26S protease regulatory 40.7 5.1 0.00017 28.1 -0.3 44 132-178 1-44 (78)
7 3fsp_A A/G-specific adenine gl 40.0 41 0.0014 30.2 5.5 83 71-166 14-107 (369)
8 1hm6_A Annexin 1; phospholipid 36.6 1.5E+02 0.0051 26.8 8.7 55 171-231 243-299 (346)
9 2jtw_A Transmembrane helix 7 o 34.0 14 0.00049 22.7 1.0 11 204-214 7-17 (26)
10 3etn_A Putative phosphosugar i 33.7 23 0.00079 29.2 2.6 41 125-166 8-53 (220)
11 3pls_A Macrophage-stimulating 32.8 62 0.0021 26.1 5.0 22 115-137 209-230 (298)
12 3n5n_X A/G-specific adenine DN 29.6 2.5E+02 0.0086 24.9 8.8 136 71-220 16-168 (287)
13 2cqm_A Ribosomal protein L17 i 29.6 14 0.00048 29.7 0.6 75 137-212 3-91 (122)
14 2i88_A Colicin-E1; protein-mem 29.1 32 0.0011 29.8 2.7 72 155-237 34-106 (191)
15 2g3v_A CAG pathogenicity islan 28.7 60 0.0021 27.5 4.3 55 125-209 61-115 (208)
16 2l76_A Nfatc2-interacting prot 28.6 12 0.0004 29.1 -0.1 22 137-158 41-62 (95)
17 3c1x_A Hepatocyte growth facto 27.3 1E+02 0.0035 26.9 5.7 21 115-136 277-297 (373)
18 1b3u_A Protein (protein phosph 26.8 1.6E+02 0.0055 25.8 7.0 51 123-173 69-120 (588)
19 2fji_1 Exocyst complex compone 26.6 39 0.0013 30.6 3.0 94 70-165 220-333 (399)
20 3few_X Colicin S4; cell lysis, 24.6 69 0.0024 31.1 4.4 72 155-237 327-402 (505)
21 3txo_A PKC-L, NPKC-ETA, protei 24.5 74 0.0025 27.6 4.3 61 115-177 205-267 (353)
22 3f66_A Hepatocyte growth facto 24.3 1.3E+02 0.0045 24.2 5.5 22 115-137 213-234 (298)
23 4e9f_A Methyl-CPG-binding doma 24.2 1.1E+02 0.0038 24.9 5.1 53 122-178 49-105 (161)
24 1a87_A Colicin N; bacteriocin, 24.0 54 0.0019 30.4 3.4 95 132-237 116-225 (321)
25 1v38_A SAM-domain protein sams 23.5 35 0.0012 24.5 1.7 53 95-147 14-69 (78)
26 1kg2_A A/G-specific adenine gl 23.1 2.8E+02 0.0095 23.1 7.5 81 73-166 6-98 (225)
27 1col_A Colicin A; antibacteria 23.1 1.1E+02 0.0038 26.7 5.0 73 154-237 31-107 (204)
28 2dl0_A SAM and SH3 domain-cont 23.0 48 0.0016 25.0 2.5 61 86-146 16-79 (97)
29 2jpc_A SSRB; DNA binding prote 21.6 1.2E+02 0.0043 19.2 4.0 47 124-178 5-51 (61)
30 3qhp_A Type 1 capsular polysac 21.2 85 0.0029 23.0 3.5 38 136-174 124-161 (166)
31 1wm3_A Ubiquitin-like protein 21.0 18 0.00062 25.2 -0.3 23 135-157 20-42 (72)
32 1yii_A Annexin A5, annexin V, 20.9 2.1E+02 0.0071 25.3 6.6 43 183-231 229-271 (320)
33 1w53_A Phosphoserine phosphata 20.6 2.7E+02 0.0093 20.8 6.9 68 90-170 9-79 (84)
34 1u46_A ACK-1, activated CDC42 20.4 47 0.0016 26.7 2.0 21 115-136 205-225 (291)
35 2jt1_A PEFI protein; solution 20.4 1E+02 0.0034 22.3 3.7 29 132-166 22-50 (77)
36 2hyv_A Annexin A2; calcium-bin 20.3 1.3E+02 0.0046 26.5 5.2 43 183-231 218-260 (308)
37 2krk_A 26S protease regulatory 20.3 9.5 0.00032 27.8 -2.0 42 134-178 11-52 (86)
No 1
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=57.20 E-value=7.3 Score=31.42 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCccc---cccccCCcchhHHHHHHHHHHhcCCC
Q 025969 134 PSEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTASS---LVEFPSKEGEVEGLLKDIAERASGKG 201 (245)
Q Consensus 134 ~peed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~~---l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (245)
++.+||.+++.-++.+|= --+..+|.-|++|..+|+..+... ...|+..+.-+..++..|+.+-+ +-
T Consensus 12 r~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~-~R 90 (120)
T 3r8s_N 12 RNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFA-SR 90 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTT-TC
T ss_pred CChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CC
Confidence 357899999999999873 357889999999999999776553 55677777778899999998886 45
Q ss_pred CCcchhhHHHH
Q 025969 202 NFSYSRFFAVG 212 (245)
Q Consensus 202 ~F~YSRlfAIG 212 (245)
+--|+|+.=+|
T Consensus 91 ~GGYTRI~K~~ 101 (120)
T 3r8s_N 91 AGGYTRILKCG 101 (120)
T ss_dssp CSCCEEEEEEE
T ss_pred CCCeEEEEECC
Confidence 55799986554
No 2
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=54.41 E-value=8.6 Score=30.79 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025969 135 SEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (245)
Q Consensus 135 peed~~~IF~Alc~Alg~---------DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (245)
+.+||.+++.-++.+|=. -++.+|.-|++|.-+|+..+.. ....|+..+..+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (116)
T 2zjr_K 13 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 91 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 568999999999998743 4788999999999999976644 345566666678899999998886 455
Q ss_pred CcchhhHHHH
Q 025969 203 FSYSRFFAVG 212 (245)
Q Consensus 203 F~YSRlfAIG 212 (245)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (116)
T 2zjr_K 92 GGYTRILRVG 101 (116)
T ss_dssp SCCCEEEECC
T ss_pred CCeeEEEECC
Confidence 5899987655
No 3
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=52.20 E-value=8.6 Score=30.84 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=59.8
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025969 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (245)
Q Consensus 135 peed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (245)
+.+||.+++..++.+|= --+.++|.-|++|.-+|+..+.. ....|+..+..+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (118)
T 1gd8_A 13 HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYR-DRQ 91 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTS-SCC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 56899999999999873 35788999999999999966543 345566666678899999999886 455
Q ss_pred CcchhhHHHH
Q 025969 203 FSYSRFFAVG 212 (245)
Q Consensus 203 F~YSRlfAIG 212 (245)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (118)
T 1gd8_A 92 GGYTRVLKLA 101 (118)
T ss_dssp SCCEEEEEEE
T ss_pred CCeEEEEECC
Confidence 5899986554
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=43.52 E-value=1.2e+02 Score=23.90 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=43.9
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHH
Q 025969 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFA 210 (245)
Q Consensus 131 qGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfA 210 (245)
.|--.++++..|-+ ++..+|.+|++.+. +.+ -.. .-++...+..|. ....+.+-+-
T Consensus 43 DG~v~~~E~~~i~~-~~~~~~l~~~~~~~----l~~---~~~----------~~~l~~~~~~i~------~~~~~~~~~l 98 (161)
T 2ou3_A 43 DGVISPEEKDWALG-FCASWGVADWVIED----LKT---YEA----------DEALEEVIARSP------QVSMAQRDIL 98 (161)
T ss_dssp SSCCCHHHHHHHHH-HHHHTTCCHHHHHH----HHH---CCC----------CSCHHHHHTTCT------TGGGCHHHHH
T ss_pred cCCCCHHHHHHHHH-HHHHcCCCHHHHHH----Hhh---ccC----------CCCHHHHHHHHH------HHhccHHHHH
Confidence 56666677776666 55667777765422 111 111 112233333332 2222322222
Q ss_pred HHHHHHHhhcCCC---ChHHHHHHHHhcCCCcc
Q 025969 211 VGLFRLLELANAT---EPTVLEKVISIRSLNWM 240 (245)
Q Consensus 211 IGLf~LLE~a~~~---dp~~L~kl~~~l~l~~~ 240 (245)
-.++.+.-..|.- |.+.|+++|..|||+..
T Consensus 99 ~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~ 131 (161)
T 2ou3_A 99 LSAIWVSAADGELHEKEKAKIRKMATILGIKEE 131 (161)
T ss_dssp HHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHH
Confidence 3334443333433 35799999999999853
No 5
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=40.91 E-value=9.9 Score=33.34 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCC
Q 025969 134 PSEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKG 201 (245)
Q Consensus 134 ~peed~~~IF~Alc~Alg~---------DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (245)
++.+||.+++.-|+.+|=. -++++|.-||+|.-+|+..+.. ....|+..+..+..++..|+.+-+ +.
T Consensus 101 RtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~-dR 179 (205)
T 3bbo_P 101 RPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYG-ER 179 (205)
T ss_dssp SCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGS-SC
T ss_pred CChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CC
Confidence 3679999999999998743 4789999999999999976654 345667767778888999998886 45
Q ss_pred CCcchhhHHHH
Q 025969 202 NFSYSRFFAVG 212 (245)
Q Consensus 202 ~F~YSRlfAIG 212 (245)
+--|+|+.=+|
T Consensus 180 ~GGYTRIlKlg 190 (205)
T 3bbo_P 180 NGGYTRIIRTL 190 (205)
T ss_dssp CSCCEECCBCS
T ss_pred CCCeeEEEECC
Confidence 55899987655
No 6
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=40.74 E-value=5.1 Score=28.06 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025969 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (245)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (245)
+.|..++|..||+.+++....+++ -|-+.|.+...|.|+.||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~---~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRG---INLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCc---cCHHHHHHHcCCCCHHHHHH
Confidence 357889999999999998776533 23455555666888877764
No 7
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=40.01 E-value=41 Score=30.19 Aligned_cols=83 Identities=12% Similarity=0.262 Sum_probs=54.4
Q ss_pred CchhHhHHHHHhhCCCcCC-----cchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHH----
Q 025969 71 PTVAETKMNFLKLYKRPIP-----SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREA---- 141 (245)
Q Consensus 71 ~TVSDTKr~F~~~y~rPIp-----sIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~---- 141 (245)
..+.+.=.++|..+.++.| .-|.-+|-++|.|+- + .--+..+|.+|++.||..++...
T Consensus 14 ~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt--~-----------~~~~~~~~~~l~~~~pt~~~la~a~~~ 80 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQT--R-----------VETVIPYFEQFIDRFPTLEALADADED 80 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTS--C-----------HHHHHHHHHHHHHHCCSHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccC--c-----------HHHHHHHHHHHHHHCCCHHHHHCCCHH
Confidence 4588888899999999876 577778888877763 1 12366788999999986554321
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHH
Q 025969 142 IFQAYITALKED--PEQYRIDAQKLEE 166 (245)
Q Consensus 142 IF~Alc~Alg~D--P~qyR~DA~~l~~ 166 (245)
-...+++.+|+- ...+++-|+.+.+
T Consensus 81 ~l~~~i~~~G~~~ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 81 EVLKAWEGLGYYSRVRNLHAAVKEVKT 107 (369)
T ss_dssp HHHHTTTTSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 124456778883 3334444444444
No 8
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=36.64 E-value=1.5e+02 Score=26.83 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCccccccccCC--cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCChHHHHHH
Q 025969 171 QTASSLVEFPSK--EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231 (245)
Q Consensus 171 ~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~kl 231 (245)
....+|.+-+.+ .|+.+..|-.|.+.+.. + ..+||--|+.-++-.| +|...|-.+
T Consensus 243 ~~g~~Le~~I~~e~sG~~~~~L~~lv~~~r~-~----~~~~A~~L~~A~~g~G-Tde~~lirI 299 (346)
T 1hm6_A 243 YSKHDMNKVLDLELKGDIENCLTVVVKCATS-K----PMFFAEKLHQAMKGIG-TRHKTLIRI 299 (346)
T ss_dssp TCCCCTTSBCCCCCBHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHSSSS-CCHHHHHHH
T ss_pred HHCcCHHHHHHHHcCchHHHHHHHHHhhcCC-c----cHHHHHHHHHHhcCCC-CCHHHHhHH
Confidence 344444444444 67888888777654432 2 3458988888886543 444444433
No 9
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=34.00 E-value=14 Score=22.71 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.8
Q ss_pred cchhhHHHHHH
Q 025969 204 SYSRFFAVGLF 214 (245)
Q Consensus 204 ~YSRlfAIGLf 214 (245)
.|+|++|+||-
T Consensus 7 sylRlwaLsLa 17 (26)
T 2jtw_A 7 SYLRLWALSLA 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHhhhh
Confidence 59999999985
No 10
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=33.72 E-value=23 Score=29.21 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Q 025969 125 VYDRLMEGYPSEEDREAIFQAYITALK-----EDPEQYRIDAQKLEE 166 (245)
Q Consensus 125 vFd~fmqGY~peed~~~IF~Alc~Alg-----~DP~qyR~DA~~l~~ 166 (245)
-+|.+|+||+ ++..+.+++.+++.+. .|++++.+-++.+.+
T Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~t~~~ld~~~i~~~~~~i~~ 53 (220)
T 3etn_A 8 HHHHHENLYF-QGMIESIQELLQKEAQAVLNIPVTDAYEKAVELIVE 53 (220)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3688999994 7889999999988765 688888888887776
No 11
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=32.77 E-value=62 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=16.3
Q ss_pred cccchhhHHHHHHHHhcCCCCch
Q 025969 115 DPVFALGFVTVYDRLMEGYPSEE 137 (245)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pee 137 (245)
..||+||++ .|+-++.|.||..
T Consensus 209 ~Di~slG~i-l~~l~~g~~~~~~ 230 (298)
T 3pls_A 209 SDVWSFGVL-LWELLTRGAPPYR 230 (298)
T ss_dssp HHHHHHHHH-HHHHHHTSCCTTT
T ss_pred hchhhHHHH-HHHHhhCCCCCCc
Confidence 369999964 6788887887643
No 12
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=29.61 E-value=2.5e+02 Score=24.94 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=68.7
Q ss_pred CchhHhHHHHHhhCCCcCCcchhHH----------HHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHH
Q 025969 71 PTVAETKMNFLKLYKRPIPSIYNTV----------LQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDRE 140 (245)
Q Consensus 71 ~TVSDTKr~F~~~y~rPIpsIYRrv----------v~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~ 140 (245)
..+.+.=..+|..+.|..| ||+. -=|+||..=| +-|.. .--+..+|.+|++.||..++..
T Consensus 16 ~~~~~~ll~Wy~~~~R~lP--WR~~~~~~~d~~~dpfe~LVs~IL-sQQts-------~~~v~~~~~rL~~~fptpe~La 85 (287)
T 3n5n_X 16 TAFRGSLLSWYDQEKRDLP--WRRRAEDEMDLDRRAYAVWVSEVM-LQQTQ-------VATVINYYTGWMQKWPTLQDLA 85 (287)
T ss_dssp HHHHHHHHHHHHHHCCCCH--HHHHHHHCCSHHHHHHHHHHHHHH-HHTSC-------HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC--CcCcCccccCCCCCHHHHHHHHHH-hCCCc-------HHHHHHHHHHHHHHCCCHHHHH
Confidence 3467777889999999876 6663 1244443333 22222 1235678899999998655432
Q ss_pred ----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCccccccccC-CcchhHHHHHHHHHHhcCCCCCcchhhHHHHH
Q 025969 141 ----AIFQAYITALKE--DPEQYRIDAQKLEEWARGQTASSLVEFPS-KEGEVEGLLKDIAERASGKGNFSYSRFFAVGL 213 (245)
Q Consensus 141 ----~IF~Alc~Alg~--DP~qyR~DA~~l~~~A~~~s~~~l~~~~~-~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGL 213 (245)
.-...+++.+|+ -...+++-|+.+.+--.|.-.+++.+++. -.|=...+...|...+-+.+.|- .=.++
T Consensus 86 ~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~----VDt~V 161 (287)
T 3n5n_X 86 SASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV----VDGNV 161 (287)
T ss_dssp TSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCC----CCHHH
T ss_pred cCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCcc----ccHHH
Confidence 123456688898 33334444444444222322233333332 23322233333333333444442 23355
Q ss_pred HHHHhhc
Q 025969 214 FRLLELA 220 (245)
Q Consensus 214 f~LLE~a 220 (245)
.|++..-
T Consensus 162 ~Rv~~Rl 168 (287)
T 3n5n_X 162 ARVLCRV 168 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666433
No 13
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=29.58 E-value=14 Score=29.73 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc-----ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025969 137 EDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS-----SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (245)
Q Consensus 137 ed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~-----~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (245)
.||.+++.-|+.+|= --++.+|.-|++|.-+|+..+.. ....|+..+.-+..++..|+.+-+ +-+
T Consensus 3 ~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~-~R~ 81 (122)
T 2cqm_A 3 SGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYK-DQT 81 (122)
T ss_dssp CCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHH-HSC
T ss_pred HHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CCC
Confidence 455666666666653 24688999999999999966644 344577777788899999998876 445
Q ss_pred CcchhhHHHH
Q 025969 203 FSYSRFFAVG 212 (245)
Q Consensus 203 F~YSRlfAIG 212 (245)
--|+|++=+|
T Consensus 82 GGYTRI~K~~ 91 (122)
T 2cqm_A 82 GGYTRMLQIP 91 (122)
T ss_dssp SCCEEEEEEC
T ss_pred CCeeEEEECC
Confidence 5799987665
No 14
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=29.08 E-value=32 Score=29.79 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCC-hHHHHHHHH
Q 025969 155 EQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATE-PTVLEKVIS 233 (245)
Q Consensus 155 ~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~d-p~~L~kl~~ 233 (245)
++|++-|+.|.+-++|+..-...+ .|+.+ ++.+.|++-+.+.=-=--|..-||..+.+| -+.|.++.+
T Consensus 34 ~Ky~kiA~elA~~~kGKkIRs~dd----------Al~s~-eK~k~nl~~K~~~kDr~AI~~Al~s~d~~~~A~nl~~~sK 102 (191)
T 2i88_A 34 EKYSKMAQELADKSKGKKIGNVNE----------ALAAF-EKYKDVLNKKFSKADRDAIFNALASVKYDDWAKHLDQFAK 102 (191)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHH----------HHHHH-HHHHHHHHHSSCHHHHHHHHHHHTTCCTHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCCHHH----------HHHHH-HHHhhChhhhccHhhHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 678899999999999998765443 22222 122224444555555555666776666555 356666666
Q ss_pred hcCC
Q 025969 234 IRSL 237 (245)
Q Consensus 234 ~l~l 237 (245)
++++
T Consensus 103 ~fg~ 106 (191)
T 2i88_A 103 YLKI 106 (191)
T ss_dssp HTTC
T ss_pred hhch
Confidence 6665
No 15
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=28.72 E-value=60 Score=27.48 Aligned_cols=55 Identities=31% Similarity=0.518 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCc
Q 025969 125 VYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFS 204 (245)
Q Consensus 125 vFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~ 204 (245)
+.|.....|--+ +.|.++++|.|- +++--.-|+. +--.+|.+||+ ||+|.
T Consensus 61 aldkvlrnymkd------yraviksigvdk--fkkvyrlles------------------etmellhaiae----npnfl 110 (208)
T 2g3v_A 61 ALDKVLRNYMKD------YRAVIKSIGVDK--FKKVYRLLES------------------ETMELLHAIAE----NPNFL 110 (208)
T ss_dssp HHHHHHHHHSSC------HHHHHHHTCHHH--HHHHHHHHHH------------------HHHHHHHHHHH----CTTSS
T ss_pred hHHHHHHHHHHH------HHHHHHHhchHH--HHHHHHHHHH------------------HHHHHHHHHHh----CCchh
Confidence 345555555322 468999999774 3332222222 12237889998 99999
Q ss_pred chhhH
Q 025969 205 YSRFF 209 (245)
Q Consensus 205 YSRlf 209 (245)
+|+|-
T Consensus 111 fskfd 115 (208)
T 2g3v_A 111 FSKFD 115 (208)
T ss_dssp CBGGG
T ss_pred HHhhh
Confidence 99874
No 16
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=28.61 E-value=12 Score=29.14 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHhcCCCHHHHH
Q 025969 137 EDREAIFQAYITALKEDPEQYR 158 (245)
Q Consensus 137 ed~~~IF~Alc~Alg~DP~qyR 158 (245)
+...+||+|||+-.|.++..+|
T Consensus 41 t~l~KL~~aYc~r~gv~~~sir 62 (95)
T 2l76_A 41 EPLQSVVDHMATHLGVSPSRIL 62 (95)
T ss_dssp SCTHHHHHHHHHHHTSCGGGEE
T ss_pred ChHHHHHHHHHhhcCCChhhEE
Confidence 4468999999999999998764
No 17
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=27.28 E-value=1e+02 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=15.3
Q ss_pred cccchhhHHHHHHHHhcCCCCc
Q 025969 115 DPVFALGFVTVYDRLMEGYPSE 136 (245)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pe 136 (245)
..||+||++ .|+-++.|.+|-
T Consensus 277 ~DvwSlG~i-l~ellt~~~~p~ 297 (373)
T 3c1x_A 277 SDVWSFGVL-LWELMTRGAPPY 297 (373)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSC
T ss_pred HHHHHHHHH-HHHHHhCcCCCC
Confidence 358999965 677777777664
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=26.83 E-value=1.6e+02 Score=25.83 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhcCCc
Q 025969 123 VTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDA-QKLEEWARGQTA 173 (245)
Q Consensus 123 VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA-~~l~~~A~~~s~ 173 (245)
...+..|.+...++++...|+..|++.++.+....|+.| +.|.+.+...+.
T Consensus 69 ~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~ 120 (588)
T 1b3u_A 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120 (588)
T ss_dssp HHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH
Confidence 334444544444456677788888877654445566655 445555554443
No 19
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=26.62 E-value=39 Score=30.64 Aligned_cols=94 Identities=12% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCchhHhHHHHHhhC-CCcCCcchhHHHHHHHHHH------hhhccccccc-ccccchhhHH---HHHHHHhcCCCCch-
Q 025969 70 PPTVAETKMNFLKLY-KRPIPSIYNTVLQELIVQQ------HLMRYKRTYQ-YDPVFALGFV---TVYDRLMEGYPSEE- 137 (245)
Q Consensus 70 ~~TVSDTKr~F~~~y-~rPIpsIYRrvv~ELLVEl------HLLs~n~~F~-YDplFALG~V---TvFd~fmqGY~pee- 137 (245)
..|+-+|-..|+..| ++--|+.|..+++|++-+. .|+. ...|+ +-..++..+. ..+..|..+|.+..
T Consensus 220 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~ 298 (399)
T 2fji_1 220 AQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNE 298 (399)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 467888999999999 8888889998888776653 4554 55554 0146666653 34555666666644
Q ss_pred -------hHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 025969 138 -------DREAIFQAYITALKEDP-EQYRIDAQKLE 165 (245)
Q Consensus 138 -------d~~~IF~Alc~Alg~DP-~qyR~DA~~l~ 165 (245)
++-...+.|.. ++.|| +.+-..-..+.
T Consensus 299 ~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~ 333 (399)
T 2fji_1 299 SKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYL 333 (399)
T ss_dssp THHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHH
Confidence 33356677777 77777 66655555443
No 20
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=24.62 E-value=69 Score=31.13 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHh---cCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCC-hHHHHH
Q 025969 155 EQYRIDAQKLEEWAR---GQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATE-PTVLEK 230 (245)
Q Consensus 155 ~qyR~DA~~l~~~A~---~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~d-p~~L~k 230 (245)
+||++-|++|.+-++ |+..-.. +..|+.+ ++.+.|.+.+++.=-=--|...||..+.+| -+.|.+
T Consensus 327 eKykklAkELAe~aKNFQGKKIRSv----------dDALaSf-EKyksNlnkKfnakDR~AIanALeSvDa~dmAkNL~k 395 (505)
T 3few_X 327 DAYKSLAREIADDVKNFQGKTIRSY----------DDAMASL-NKVLSNPGFKFNRADSDALANVWRSIDAQDMANKLGN 395 (505)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCCH----------HHHHHHH-HHHHTCTTCCCCHHHHHHHHHHHHHCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccCCccCCH----------HHHHHHH-HHHhhChhhhcchhhHHHHHHHHHHcCHHHHHHHHHH
Confidence 566778888888775 6665433 3344444 345557777777777677777777766554 345555
Q ss_pred HHHhcCC
Q 025969 231 VISIRSL 237 (245)
Q Consensus 231 l~~~l~l 237 (245)
+.+++++
T Consensus 396 fSKaFkv 402 (505)
T 3few_X 396 ISKAFKF 402 (505)
T ss_dssp TCGGGCS
T ss_pred Hhhhccc
Confidence 5555554
No 21
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=24.49 E-value=74 Score=27.60 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=42.2
Q ss_pred cccchhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q 025969 115 DPVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV 177 (245)
Q Consensus 115 DplFALG~VTvFd~fmqGY~p--eed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~ 177 (245)
..+|+||++ .|+-++ |.+| .++...+++.+++..-.-|..+..++..+....-...+++-.
T Consensus 205 ~DiwslG~i-l~ell~-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~ 267 (353)
T 3txo_A 205 VDWWAMGVL-LYEMLC-GHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRL 267 (353)
T ss_dssp HHHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred cCCCcchHH-HHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHcc
Confidence 358999975 466665 7666 355677888888876666767777788887766665555443
No 22
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=24.31 E-value=1.3e+02 Score=24.25 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=15.8
Q ss_pred cccchhhHHHHHHHHhcCCCCch
Q 025969 115 DPVFALGFVTVYDRLMEGYPSEE 137 (245)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pee 137 (245)
..+|+||++ +|+-++.|.||-.
T Consensus 213 ~Di~slG~i-l~~l~~~~~~~~~ 234 (298)
T 3f66_A 213 SDVWSFGVL-LWELMTRGAPPYP 234 (298)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSST
T ss_pred HHHHHHHHH-HHHHHhCCCCCCc
Confidence 359999975 6777776776643
No 23
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=24.23 E-value=1.1e+02 Score=24.87 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCCchhHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025969 122 FVTVYDRLMEGYPSEEDRE----AIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (245)
Q Consensus 122 ~VTvFd~fmqGY~peed~~----~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (245)
+..+|.+|++-||..++.. .=...+++.+|+ |++-|+.|.+.++|.=..+..+
T Consensus 49 v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~----y~~KAk~i~~~a~~~vp~~~~~ 105 (161)
T 4e9f_A 49 AIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGL----YDLRAKTIVKFSDEYLTKQWKY 105 (161)
T ss_dssp HHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCC----HHHHHHHHHHHhCCcCCCChhh
Confidence 5568999999998655432 234567888887 6778999999888754444433
No 24
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=23.96 E-value=54 Score=30.42 Aligned_cols=95 Identities=11% Similarity=0.106 Sum_probs=54.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHHH---hcCCccccccccCCcchhHHHHHHHHHHh
Q 025969 132 GYPSEEDREAIFQAYITALKEDP-----------EQYRIDAQKLEEWA---RGQTASSLVEFPSKEGEVEGLLKDIAERA 197 (245)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~DP-----------~qyR~DA~~l~~~A---~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~ 197 (245)
-|++++....=.++|-.+.++-. ++|.+-|++|.+-+ +|+..-. .+..|+.+ ++.
T Consensus 116 ~~~~~~~~~~Ek~aLkdAse~ia~fy~kIsE~~GeKYk~lAkeIA~~lknfKGKkIRs----------~dDALksf-EKy 184 (321)
T 1a87_A 116 LFRKEEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIRS----------YNEAMASL-NKV 184 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCGGGCCC----------HHHHHHHH-HHH
T ss_pred hcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCC----------HHHHHHHH-HHH
Confidence 35666666666666665555433 56777788887765 5555433 23344433 244
Q ss_pred cCCCCCcchhhHHHHHHHHHhhcCCCC-hHHHHHHHHhcCC
Q 025969 198 SGKGNFSYSRFFAVGLFRLLELANATE-PTVLEKVISIRSL 237 (245)
Q Consensus 198 ~~n~~F~YSRlfAIGLf~LLE~a~~~d-p~~L~kl~~~l~l 237 (245)
..|++-+.+.=-=--|...||..+.+| -+.|.++.+++++
T Consensus 185 k~nlnkK~nakDR~AI~nALesvd~~dmA~NL~kfSK~Fg~ 225 (321)
T 1a87_A 185 LANPKMKVNKSDKDAIVNAWKQVNAKDMANKIGNLGKAFKV 225 (321)
T ss_dssp HTCTTCCCCHHHHHHHHHHHHTCCHHHHHHHHHTTCGGGCC
T ss_pred hhChhhhcchhhHHHHHHHHHHcCHHHHHHHHHHHHhhcch
Confidence 456666666666666667776665544 3455555555544
No 25
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=23.55 E-value=35 Score=24.53 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhcccccccccc---cchhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 025969 95 VLQELIVQQHLMRYKRTYQYDP---VFALGFVTVYDRLMEGYPSEEDREAIFQAYI 147 (245)
Q Consensus 95 vv~ELLVElHLLs~n~~F~YDp---lFALG~VTvFd~fmqGY~peed~~~IF~Alc 147 (245)
-|.|.|..++|-.|-..|.-+. +=-+.-.|-=|---=|-.+.+||.+|..|+-
T Consensus 14 ~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~ 69 (78)
T 1v38_A 14 TIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAE 69 (78)
T ss_dssp BHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4677999999999999995443 3333334445555567777788888887753
No 26
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=23.13 E-value=2.8e+02 Score=23.11 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=44.6
Q ss_pred hhHhHHHHHhhCCC-cC-----CcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHH----
Q 025969 73 VAETKMNFLKLYKR-PI-----PSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAI---- 142 (245)
Q Consensus 73 VSDTKr~F~~~y~r-PI-----psIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~I---- 142 (245)
+.+.=.+.|..+.+ +. ..-|.-+|-++|.|+ .+ .--+..+|.+|++.||..++....
T Consensus 6 ~~~~l~~~~~~~g~~~l~w~~~~~pfe~lv~~IlsQq------t~-------~~~v~~~~~~l~~~~pt~~~la~~~~~~ 72 (225)
T 1kg2_A 6 FSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQ------TQ-------VATVIPYFERFMARFPTVTDLANAPLDE 72 (225)
T ss_dssp HHHHHHHHHHHHCCCCSGGGSSCCHHHHHHHHHHHTS------SC-------HHHHHHHHHHHHHHCSSHHHHHHSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHCc------CC-------HHHHHHHHHHHHHHCCCHHHHHCCCHHH
Confidence 34444566677765 23 345666666665554 22 112567788999999855433221
Q ss_pred HHHHHHhcCCC--HHHHHHHHHHHHH
Q 025969 143 FQAYITALKED--PEQYRIDAQKLEE 166 (245)
Q Consensus 143 F~Alc~Alg~D--P~qyR~DA~~l~~ 166 (245)
...++..+|+. ...+++-|+.+.+
T Consensus 73 l~~~i~~~G~~~kA~~l~~~a~~i~~ 98 (225)
T 1kg2_A 73 VLHLWTGLGYYARARNLHKAAQQVAT 98 (225)
T ss_dssp HHHHHTTSCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 23456788983 3334444444443
No 27
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=23.11 E-value=1.1e+02 Score=26.67 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHH---hcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCC-hHHHH
Q 025969 154 PEQYRIDAQKLEEWA---RGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATE-PTVLE 229 (245)
Q Consensus 154 P~qyR~DA~~l~~~A---~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~d-p~~L~ 229 (245)
-++|++-|+++.+-+ +|+..-.. +..|+.+ ++...|++-+.+.=-=--|...||..+.+| -+-|.
T Consensus 31 G~Ky~~~A~eiA~~l~~~kGKkIRs~----------~dAl~s~-eK~k~nlnkK~n~kDr~AI~~Al~s~d~~~~A~nl~ 99 (204)
T 1col_A 31 GDKYKAIAKDIADNIKNFQGKTIRSF----------DDAMASL-NKITANPAMKINKADRDALVNAWKHVDAQDMANKLG 99 (204)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCCCH----------HHHHHHH-HHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCH----------HHHHHHH-HHHhhChhhhcchhhHHHHHHHHHHcCHHHHHHHHH
Confidence 367888888888876 66665433 3344443 244456766777666666777777666555 35666
Q ss_pred HHHHhcCC
Q 025969 230 KVISIRSL 237 (245)
Q Consensus 230 kl~~~l~l 237 (245)
++.+++++
T Consensus 100 ~~sK~f~~ 107 (204)
T 1col_A 100 NLSKAFKV 107 (204)
T ss_dssp HHCGGGCC
T ss_pred HHHhhhch
Confidence 66666655
No 28
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.04 E-value=48 Score=24.99 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=41.7
Q ss_pred CcCCcchhHHHHHHHHHHhhhccccccc---ccccchhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 025969 86 RPIPSIYNTVLQELIVQQHLMRYKRTYQ---YDPVFALGFVTVYDRLMEGYPSEEDREAIFQAY 146 (245)
Q Consensus 86 rPIpsIYRrvv~ELLVElHLLs~n~~F~---YDplFALG~VTvFd~fmqGY~peed~~~IF~Al 146 (245)
+|+++-.-.-|.|.|..++|-.|-..|. ||.+=.|--.|-=|---=|-...+||.+|..|+
T Consensus 16 ~p~~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai 79 (97)
T 2dl0_A 16 KPVSPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAA 79 (97)
T ss_dssp CCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHH
Confidence 4555544455788999999999999995 454322333455555555777778888888776
No 29
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.62 E-value=1.2e+02 Score=19.15 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025969 124 TVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (245)
Q Consensus 124 TvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (245)
.++..+.+|+...| +...+|..+..++.--..+.+..+-.+..+++.
T Consensus 5 ~vl~l~~~g~s~~e--------IA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~ 51 (61)
T 2jpc_A 5 QVLKLIDEGYTNHG--------ISEKLHISIKTVETHRMNMMRKLQVHKVTELLN 51 (61)
T ss_dssp HHHHHHHTSCCSHH--------HHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHcCCCHHH--------HHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 35566788887644 567788888888888777777666655554443
No 30
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=21.16 E-value=85 Score=23.03 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcc
Q 025969 136 EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTAS 174 (245)
Q Consensus 136 eed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~ 174 (245)
..+.+.+-+++.+.+. ||+.+++-+++..++++..+.+
T Consensus 124 ~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~s~~ 161 (166)
T 3qhp_A 124 PNNAKDLSAKIDWWLE-NKLERERMQNEYAKSALNYTLE 161 (166)
T ss_dssp TTCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHCChh
Confidence 3567778888877776 8887777777766666555543
No 31
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.98 E-value=18 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=17.7
Q ss_pred CchhHHHHHHHHHHhcCCCHHHH
Q 025969 135 SEEDREAIFQAYITALKEDPEQY 157 (245)
Q Consensus 135 peed~~~IF~Alc~Alg~DP~qy 157 (245)
|...-..|++|+|+..|.+|.++
T Consensus 20 ~~t~l~kl~~~y~~~~gi~~~~~ 42 (72)
T 1wm3_A 20 RHTPLSKLMKAYCERQGLSMRQI 42 (72)
T ss_dssp TTSCTHHHHHHHHHHHTCCTTTC
T ss_pred CCChHHHHHHHHHHHhCCCcceE
Confidence 34556789999999999887544
No 32
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=20.94 E-value=2.1e+02 Score=25.27 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCChHHHHHH
Q 025969 183 EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231 (245)
Q Consensus 183 ~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~kl 231 (245)
.|+.+..|-+|...+. |+ ..+||=-|+.-|+-.| +|...|-.+
T Consensus 229 sGd~~~~Llalv~~~~-~~----~~~~A~~L~~a~~g~G-td~~~Liri 271 (320)
T 1yii_A 229 SGDLEKLLLAVVKCIR-SV----PAYFAETLYYSMKGAG-TDDDTLIRV 271 (320)
T ss_dssp CCHHHHHHHHHHHHHH-CH----HHHHHHHHHHHHSSSS-CCHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-CC----cHHHHHHHHHhhccCC-CcHHHHHHH
Confidence 6677777766664443 22 2458888888886443 344334333
No 33
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=20.64 E-value=2.7e+02 Score=20.83 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=52.2
Q ss_pred cchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHh--cCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Q 025969 90 SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM--EGYPSEEDREAIFQAYITALKED-PEQYRIDAQKLEE 166 (245)
Q Consensus 90 sIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fm--qGY~peed~~~IF~Alc~Alg~D-P~qyR~DA~~l~~ 166 (245)
.-|+.++++.|..+ |. =+|.-.+-|-+-+ ++..| ||--.|-...++.+..+ |+++..-=.=|.|
T Consensus 9 ~~Y~~iL~~yl~~~-----------~E-~~Ly~~q~fs~~~iek~i~P-EeiV~iHk~~i~el~~~l~e~v~~Sfd~L~E 75 (84)
T 1w53_A 9 QRYHQLLSRYIAEL-----------TE-TSLYQAQKFSRKTIEHQIPP-EEIISIHRKVLKELYPSLPEDVFHSLDFLIE 75 (84)
T ss_dssp HHHHHHHHHHHHHC-----------CH-HHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-----------cH-HHHHHHHHhhHHHHHcCCCH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 35788888887653 33 4677788888888 99976 55899999999999999 9998876666666
Q ss_pred HHhc
Q 025969 167 WARG 170 (245)
Q Consensus 167 ~A~~ 170 (245)
...|
T Consensus 76 vm~g 79 (84)
T 1w53_A 76 VMIG 79 (84)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 34
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=20.41 E-value=47 Score=26.68 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=14.3
Q ss_pred cccchhhHHHHHHHHhcCCCCc
Q 025969 115 DPVFALGFVTVYDRLMEGYPSE 136 (245)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pe 136 (245)
..||+||++ .|+-++.|.+|-
T Consensus 205 ~Di~slG~i-l~~l~~~g~~p~ 225 (291)
T 1u46_A 205 SDTWMFGVT-LWEMFTYGQEPW 225 (291)
T ss_dssp HHHHHHHHH-HHHHHTTSCCTT
T ss_pred hhHHHHHHH-HHHHHhCCCCCc
Confidence 468999975 566666466663
No 35
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.40 E-value=1e+02 Score=22.27 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=24.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025969 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEE 166 (245)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~ 166 (245)
||||. ..-||+++|..+...|.|-++|++
T Consensus 22 g~~ps------v~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVK------TRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEE------HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcC------HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 68764 355899999999999999999988
No 36
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=20.28 E-value=1.3e+02 Score=26.46 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCChHHHHHH
Q 025969 183 EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231 (245)
Q Consensus 183 ~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~kl 231 (245)
.|+.+..|-.|...+.. + ..+||--|+.-++-. .+|...|-.+
T Consensus 218 sG~~~~~L~~lv~~~~~-~----~~~~A~~L~~A~~g~-GTde~~liri 260 (308)
T 2hyv_A 218 KGDLENAFLNLVQCIQN-K----PLYFADRLYDSMKGK-GTRDKVLIRI 260 (308)
T ss_dssp CHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHSSS-SCCHHHHHHH
T ss_pred CchHHHHHHHHHhccCC-C----cHHHHHHHHHHhccC-CCCHHHHHHH
Confidence 56777777666644432 2 245888888888654 3444444333
No 37
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=20.25 E-value=9.5 Score=27.83 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025969 134 PSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (245)
Q Consensus 134 ~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (245)
|..++|..||+.+++-...+++ -|-+.|.+...|.|+.||..
T Consensus 11 Pd~~~R~~IL~~~l~~~~l~~d---vdl~~LA~~T~G~SGADL~~ 52 (86)
T 2krk_A 11 PNEEARLDILKIHSRKMNLTRG---INLRKIAELMPGASGAEVKG 52 (86)
T ss_dssp CCHHHHHHHHHHHTTTSEECTT---CCCHHHHHTCSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCCHHHHHH
Confidence 5567899999999987765432 13345555566788777765
Done!