BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025970
         (245 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
           Ligated With Inhibitor Ap5a, Showing The Pathway Of
           Phosphoryl Transfer
 pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
           Ligated With Inhibitor Ap5a, Showing The Pathway Of
           Phosphoryl Transfer
          Length = 220

 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 155/208 (74%), Gaps = 1/208 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65

Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+QR DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
           P++D+Y K G+ A + A +PP  V  ++
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADI 213


>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
          Length = 243

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 159/234 (67%)

Query: 8   LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLR 67
           LE+  ++D++ EL RR+ C SKPD R + +G PGSGKGTQS  +K  +C CHL+TGD+LR
Sbjct: 6   LENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLR 65

Query: 68  SAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKL 127
            A   KT LG+K K  +++G+LV D +V+ ++D+ +K P C+KGFILDG+PR V QAE L
Sbjct: 66  EAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDL 125

Query: 128 DEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187
           +++L+K  TK+D V  F + D +L  RI+GR IH  SGR YH  F PPKV   DDVT EP
Sbjct: 126 NKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP 185

Query: 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241
           LIQR+DD   VLK RL  F  +T P+I YY  K +L  L A +P  ++  ++ +
Sbjct: 186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQ 239


>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
           Mutants
          Length = 220

 Score =  253 bits (646), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 154/207 (74%), Gaps = 1/207 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65

Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+QR DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVE 238
           P++D+Y K G+ A + A +PP  V  +
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWAD 212


>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
 pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
          Length = 233

 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 156/212 (73%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R VL+GPPG+GKGTQ+P +   +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct: 18  RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++V+ +I++ ++ P C+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I DS+L 
Sbjct: 78  EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK RLEA+H QT P
Sbjct: 138 RRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTP 197

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +++YY+K+G+ + + A + P  V   +    S
Sbjct: 198 LVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229


>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
          Length = 242

 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 156/212 (73%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R VL+GPPG+GKGTQ+P + + +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct: 18  RAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++VV +I++ ++ P C+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I DS+L 
Sbjct: 78  EMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK RL+A+H QT P
Sbjct: 138 RRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTP 197

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +I+YY K+G+ + + A + P  V   +    S
Sbjct: 198 LIEYYRKRGIHSAIDASQTPDVVFASILAAFS 229


>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
           Atp- Analogue Showing Domain Closure Over Atp
 pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
           Atp- Analogue Showing Domain Closure Over Atp
          Length = 220

 Score =  247 bits (630), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 116/208 (55%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65

Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFIL GFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+Q  DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTE 185

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
           P++D+Y K G+ A + A +PP  V  ++
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADI 213


>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
           Kinase Cgd5_3360
          Length = 217

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 148/211 (70%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            L+LIG PGSGKGTQ   IK EY L HL+TGDMLR A+   T +G++AK  ++ G  V D
Sbjct: 7   NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++V+G++ +      C  GF+LDGFPRT+ QAE L ++L + G  +  V+ F IDDS + 
Sbjct: 67  EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ERI+GR  HPASGR YH K+ PPK  G DDVTGEPL+ R DD A+ +K RL+ FHKQT P
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAP 186

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           ++ +Y   G+L +++A+ PPKEVT +++K+L
Sbjct: 187 LVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217


>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
           Marinus
          Length = 216

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 143/213 (67%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y + H++TGDM R+A+   T LG+KAK  MD+G LV D
Sbjct: 2   NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+KGF+LDGFPRTV QA+ LD +L   G K+D VLN  ++   L 
Sbjct: 62  EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+TGRWI    G +YHT F PP V G  D  G  L QR DD  + +K+RL+   KQT+P
Sbjct: 122 KRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KGVL  +  ++  K+V V++  +L  
Sbjct: 182 LLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214


>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
           Aeolicus In Complex With Ap5a
 pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
 pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
 pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
 pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
           State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
           ACTIVE SITE
 pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
           State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
           ACTIVE SITE
          Length = 206

 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 141/211 (66%), Gaps = 10/211 (4%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           LV +GPPG+GKGTQ+  +  E    H++TGD+LR AV   TPLG KAKE M++GELV DD
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62

Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           L++ +I++   K       I DGFPRTV QAE LDEMLEK+G K+D VL F + D ++ E
Sbjct: 63  LIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119

Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           R++GR I+P +G  YH K+ PP         G  +IQR+DD  +V+K RLE + +QT P+
Sbjct: 120 RLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPL 172

Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           I+YY KKG+L  + A KP +EV  +V +V+ 
Sbjct: 173 IEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203


>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
           Pseu
 pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
           Pseu
          Length = 230

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 135/199 (67%), Gaps = 7/199 (3%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           RL+L+G PG+GKGTQ+  IK+++ +  ++TGD LR+AV A TPLG++AK   D+G+LV D
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            L++G++ + +K+  C  G++ DGFPRT+ QA+   E     G  ID VL   +  S + 
Sbjct: 70  SLIIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEA----GVAIDYVLEIDVPFSEII 125

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER +GR  HPASGR+YH KF PPKV G DDVTGEPL+QR DD  + +K RL+ +  QT+P
Sbjct: 126 ERXSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKP 185

Query: 213 VIDYY---AKKGVLAQLHA 228
           +I YY   A++G    L A
Sbjct: 186 LITYYGDWARRGAENGLKA 204


>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
           Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
           Angstroms Resolution: A Model For A Catalytic Transition
           State
 pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
           Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
           Angstroms Resolution: A Model For A Catalytic Transition
           State
 pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
           Structure Of E. Cloi Adenylate Kinase With Bound Amp And
           Amppnp
 pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
           Structure Of E. Cloi Adenylate Kinase With Bound Amp And
           Amppnp
 pdb|4AKE|A Chain A, Adenylate Kinase
 pdb|4AKE|B Chain B, Adenylate Kinase
 pdb|2ECK|A Chain A, Structure Of Phosphotransferase
 pdb|2ECK|B Chain B, Structure Of Phosphotransferase
 pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
           Coli, In Complex With Ap5a
 pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
           Coli, In Complex With Ap5a
          Length = 214

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 143/217 (65%), Gaps = 9/217 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G PG+GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177

Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214


>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
           In Complex With Ap5a
 pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
           In Complex With Ap5a
          Length = 214

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 142/217 (65%), Gaps = 9/217 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G PG+GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DD TGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAP 177

Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214


>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (Q199rG213E)
 pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (Q199rG213E)
          Length = 217

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 145/213 (68%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLEG 214


>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (Q199r)
 pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (Q199r)
          Length = 216

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 145/213 (68%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214


>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (G214rQ199R)
          Length = 217

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 145/212 (68%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           ++D+Y++KG LA ++ ++  ++V  +V+ +L 
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213


>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
          Length = 217

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 145/213 (68%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQQDIQDVYADVKDLLGG 214


>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
           The Gly-Loop
 pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
           The Gly-Loop
          Length = 214

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 142/217 (65%), Gaps = 9/217 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G P +GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177

Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214


>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (A193vQ199R)
 pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (A193vQ199R)
          Length = 216

 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 144/213 (67%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG L  ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLVNVNGQRDIQDVYADVKDLLGG 214


>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (T179iQ199R)
 pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (T179iQ199R)
          Length = 217

 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 144/213 (67%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQ +P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214


>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (q16l/q199r/)
 pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
           Subtilis Adenylate Kinase (q16l/q199r/)
          Length = 216

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 144/213 (67%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGT    I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214


>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
           The Gly-Loop
 pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
           The Gly-Loop
          Length = 214

 Score =  191 bits (484), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 141/217 (64%), Gaps = 9/217 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G   +GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177

Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214


>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
 pdb|1ZIO|A Chain A, Phosphotransferase
 pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
          Length = 217

 Score =  189 bits (481), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 137/212 (64%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           LVL+G PG+GKGTQ+  I   Y + H++TGDM R+A+   TPLG++AK+ MD+G+LV D+
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62

Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           + +GI+ + + K  C+ GF+LDGFPRTV QAE L+ ML   G K+D V++  +   +L E
Sbjct: 63  VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122

Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           R+TGR I    G +YH  F PP   G  D  G  L QR DD    + +RLE   KQ +P+
Sbjct: 123 RLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPL 182

Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           +D+Y +KG L  ++ E+  ++V  +++++L  
Sbjct: 183 VDFYEQKGYLRNINGEQDMEKVFADIRELLGG 214


>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
 pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
          Length = 216

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 142/213 (66%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y +KG L  ++ ++  ++V  +++ +L  
Sbjct: 182 LLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214


>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
           Globisporus
          Length = 217

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 132/213 (61%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y   H++TGDM R+A+   T LG+KAK  MD+G LV D
Sbjct: 2   NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+ GF+LDGFPRTV QAE LD++L   G KI+ VLN  ++   L 
Sbjct: 62  EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            R+TGR I    G SYH  F PP+V G  D  G  L QR DD    + +RLE    QT P
Sbjct: 122 ARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++ +Y  K VL  ++ +K  K+V  ++  +L  
Sbjct: 182 LLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 214


>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
          Length = 217

 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 140/213 (65%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D   L 
Sbjct: 62  EVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++ +Y  K VL  ++ ++  ++V  +V+ +L  
Sbjct: 182 LLAFYDSKEVLVNVNGQQDIQDVFADVKVILGG 214


>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
           Mitochondrial Matrix Adenylate Kinase And Its Substrate
           Amp At 1.85 Angstroms Resolution
 pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
           Mitochondrial Matrix Adenylate Kinase And Its Substrate
           Amp At 1.85 Angstroms Resolution
          Length = 226

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 128/191 (67%), Gaps = 6/191 (3%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R  ++G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ D
Sbjct: 8   RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D++  ++   +K    +  ++LDGFPRT+ QAE LD     +  +ID V+N  +   +++
Sbjct: 68  DVMTRLVLHELKN-LTQYNWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+T RWIHP SGR Y+ +F PPK  G DD+TGEPL+QR+DD  + +  RL+A+  QTEP
Sbjct: 122 QRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEP 181

Query: 213 VIDYYAKKGVL 223
           V++YY KKGVL
Sbjct: 182 VLEYYRKKGVL 192


>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
          Length = 227

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 129/191 (67%), Gaps = 6/191 (3%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R V++G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ D
Sbjct: 9   RAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D++  +    +K    +  ++LDGFPRT+ QAE LD     +  +ID V+N  +   +++
Sbjct: 69  DVMTRLALHELKN-LTQYSWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 122

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+T RWIHPASGR Y+ +F PPK  G DD+TGEPLIQR+DD  + +  RL+A+  QT+P
Sbjct: 123 QRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKP 182

Query: 213 VIDYYAKKGVL 223
           V++YY KKGVL
Sbjct: 183 VLEYYQKKGVL 193


>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
 pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
 pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
           Complex With Diguanosine Pentaphosphate
 pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
           Complex With Diguanosine Pentaphosphate
          Length = 246

 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 130/213 (61%), Gaps = 7/213 (3%)

Query: 14  VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK 73
           VD+ TE L  F+  +    R V++GPPGSGKGT    I   + L HL++G  LR  + A 
Sbjct: 11  VDLGTENLY-FQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS 69

Query: 74  TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEK 133
           T +G  AK+ ++K  LV D ++  ++   ++    +  ++LDGFPRT+ QAE LD++ E 
Sbjct: 70  TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE- 127

Query: 134 QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD 193
               +D V++  I    L++R++ RWIHP SGR Y+  F PP VHG DDVTGEPL+Q++D
Sbjct: 128 ----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183

Query: 194 DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL 226
           D  + + +RL  +    +PVI+ Y  +GVL Q 
Sbjct: 184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216


>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
 pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
          Length = 231

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 120/194 (61%), Gaps = 6/194 (3%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R V++GPPGSGKGT    I   + L HL++G  LR  + A T +G  AK+ ++K  LV D
Sbjct: 7   RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 66

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            ++  ++   ++    +  ++LDGFPRT+ QAE LD++ E     +D V++  I    L+
Sbjct: 67  HVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE-----VDLVISLNIPFETLK 120

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R++ RWIHP SGR Y+  F PP VHG DDVTGEPL+Q++DD  + + +R   +    +P
Sbjct: 121 DRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKP 180

Query: 213 VIDYYAKKGVLAQL 226
           VI+ Y  +GVL Q 
Sbjct: 181 VIELYKSRGVLHQF 194


>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
           P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
 pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
           P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
          Length = 222

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 131/214 (61%), Gaps = 11/214 (5%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           ++++ G P SGKGTQ  +IK +Y L H++ GD+LR+ +AA +  G +AKE M+KG+LV D
Sbjct: 7   KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66

Query: 93  DLVVGIIDQAMKKPSC-EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           ++VV ++ + +++P   E G++LDG+PR+  QA  L E LE    + D  +   + D +L
Sbjct: 67  EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMAL-ETLE---IRPDTFILLDVPDELL 122

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER+ GR + P +G+ YH K++PP+    ++     L QR DDT + +K RLE +++  E
Sbjct: 123 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIE 178

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            ++  Y  + ++ ++  +     V  ++ ++L S
Sbjct: 179 SLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210


>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
           Kinase
          Length = 181

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 31/185 (16%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  
Sbjct: 2   RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL   ++D  +  P    GFILDG+PR+V QA+ L EMLE++GT ID VL F + + +L 
Sbjct: 62  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+ GR                                R DDT  V+ +R++ +  +T P
Sbjct: 122 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 150

Query: 213 VIDYY 217
           +++YY
Sbjct: 151 LLEYY 155


>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
           Kinase Complexed With Two Molecules Of Adp And Mg
          Length = 201

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 31/185 (16%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  
Sbjct: 22  RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL   ++D  +  P    GFILDG+PR+V QA+ L EMLE++GT ID VL F + + +L 
Sbjct: 82  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 141

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+ GR                                R DDT  V+ +R++ +  +T P
Sbjct: 142 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 170

Query: 213 VIDYY 217
           +++YY
Sbjct: 171 LLEYY 175


>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
           Thermophilus Hb8
          Length = 186

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 32/211 (15%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           ++ +GPPG+GKGTQ+  +  E     L+TGD+LR  VA  TPLG + +  M++G+LV DD
Sbjct: 7   VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66

Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           L++ +I + + +       I DGFPRT+ QAE LD +L + GT++  V+   + +  L  
Sbjct: 67  LILELIREELAER-----VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVR 121

Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           RI  R                             L  R DD  + ++ RLE + ++TEP+
Sbjct: 122 RILRRA---------------------------ELEGRSDDNEETVRRRLEVYREKTEPL 154

Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           + YY  +GVL ++     P EV   ++  L 
Sbjct: 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185


>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
           From Desulfovibrio Gigas
 pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
           Adenylate Kinase From Gram-Negative Bacteria
           Desulfovibrio Gigas
 pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
           Adenylate Kinase From Gram-Negative Bacteria
           Desulfovibrio Gigas
          Length = 223

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV D
Sbjct: 2   NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D+ + ++ + ++    + G++LDGFPR  VQA+KL E L+++G KI+ V+   +   + +
Sbjct: 62  DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120

Query: 153 ERITGRWI 160
            RI GR I
Sbjct: 121 NRIMGRRI 128


>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
           From Desulfovibrio Gigas
          Length = 223

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV D
Sbjct: 2   NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D+ + ++ + ++    + G++LDGFPR  VQA+KL E L+++G KI+ V+   +   + +
Sbjct: 62  DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120

Query: 153 ERITGRWI 160
            RI GR I
Sbjct: 121 NRIMGRRI 128


>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
 pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
 pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
 pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
           (Adenosine)tetraphosphate
 pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
           (Adenosine)tetraphosphate
          Length = 196

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 32/197 (16%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           + ++G PGSGKGTQ   I  +Y   HL+TGD+LRS V++ +  G K  E M+KG+LV  +
Sbjct: 12  IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71

Query: 94  LVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            V+ ++  AM  K +  KGF++DG+PR V Q E+ +  + +        L   +D     
Sbjct: 72  TVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQ------PTLLLYVDAG--P 123

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           E +T R +                     + +G     R DD  + +K RLE ++K TEP
Sbjct: 124 ETMTQRLLKRG------------------ETSG-----RVDDNEETIKKRLETYYKATEP 160

Query: 213 VIDYYAKKGVLAQLHAE 229
           VI +Y K+G++ +++AE
Sbjct: 161 VIAFYEKRGIVRKVNAE 177


>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
           2.1 Angstroms Resolution
          Length = 195

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 32/212 (15%)

Query: 29  KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE 88
           K  K + ++G PGSGKGTQ   I  +Y   HL+TGD+LR+ V++ +  G    E M+KG+
Sbjct: 7   KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 66

Query: 89  LVSDDLVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID 147
           LV  + V+ ++  AM  K    KGF++DG+PR V Q E+ +  + +        L   +D
Sbjct: 67  LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQP------TLLLYVD 120

Query: 148 DSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFH 207
                E +T R +                     + +G     R DD  + +K RLE ++
Sbjct: 121 AG--PETMTKRLLKRG------------------ETSG-----RVDDNEETIKKRLETYY 155

Query: 208 KQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
           K TEPVI +Y K+G++ +++AE    +V  +V
Sbjct: 156 KATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187


>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
 pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
 pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
 pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
 pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
 pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
          Length = 199

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 114/216 (52%), Gaps = 34/216 (15%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K + +IG PGSGKGTQ   + ++Y   HL+TG++LR  +A+++      ++ M++G+LV 
Sbjct: 13  KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP 72

Query: 92  DDLVVGIIDQAMKKPSCE-KGFILDGFPRTVVQAEKLDEMLEKQGTKI-DKVLNFAIDDS 149
             +V+ ++ +AM     + +GF++DG+PR V Q E+        G +I D  L   +D S
Sbjct: 73  SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF-------GRRIGDPQLVICMDCS 125

Query: 150 ILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQ 209
              + +T R +         ++ + P                 DDT + +  RLEA+++ 
Sbjct: 126 --ADTMTNRLLQ-------MSRSSLP----------------VDDTTKTIAKRLEAYYRA 160

Query: 210 TEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           + PVI YY  K  L +++AE  P++V +++   + S
Sbjct: 161 SIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196


>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
          Length = 217

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 36/200 (18%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K + ++G PGSGKGTQ   +  ++   HL++GD+LR+ V + +P G + K  M++GELV 
Sbjct: 30  KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89

Query: 92  DDLVVGIIDQAMKK---PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD 148
            ++V+ ++ +AM K    +C   F++DG+PR + Q  K     EK+      V+NF + +
Sbjct: 90  LEVVLALLKEAMIKLVDKNCH--FLIDGYPRELDQGIK----FEKEVCPCLCVINFDVSE 143

Query: 149 SILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHK 208
            ++ +R+  R                                R DD  + +  R   F++
Sbjct: 144 EVMRKRLLKRA---------------------------ETSNRVDDNEETIVKRFRTFNE 176

Query: 209 QTEPVIDYYAKKGVLAQLHA 228
            T+PVI++Y ++  +  + A
Sbjct: 177 LTKPVIEHYKQQNKVITIDA 196


>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
           Derived From Two Structures Of Ligated Uridylate Kinase
 pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
           Derived From Two Structures Of Ligated Uridylate Kinase
          Length = 203

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA-AKTPLGIKAKEAMDKGELVSD 92
           + ++G PG+GKGTQ   +  +Y   HL+ GD+LR+    A +  G   K  + +G++V  
Sbjct: 18  IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77

Query: 93  DLVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
           ++ + ++  A+     + +  F++DGFPR + QA       E+   +   +L F   + I
Sbjct: 78  EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAIS----FERDIVESKFILFFDCPEDI 133

Query: 151 LEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQT 210
           + ER+  R     SGRS                         DD  + +K R   F + +
Sbjct: 134 MLERLLERG--KTSGRS-------------------------DDNIESIKKRFNTFKETS 166

Query: 211 EPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
            PVI+Y+  K  + ++  ++  ++V  +VQ  +
Sbjct: 167 MPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199


>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
           Phosphoryl Transfer Transition State Analog In UmpCMP
           Kinase
 pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
           Phosphoryl Transfer Transition State Analog
 pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
 pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
 pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
           Alf3
 pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
           Beryllium Fluoride
          Length = 194

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 30/218 (13%)

Query: 28  SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG 87
           SKP+   VL G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G      +  G
Sbjct: 4   SKPNVVFVL-GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62

Query: 88  ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID 147
           E+V   + V ++  A+   +  K F++DGFPR        +E + K       VL F   
Sbjct: 63  EIVPSIVTVKLLKNAI-DANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVLFFDCP 120

Query: 148 DSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFH 207
           + ++ +R+  R    +SGRS                         DD  + +K R   F+
Sbjct: 121 EEVMTQRLLKR--GESSGRS-------------------------DDNIESIKKRFNTFN 153

Query: 208 KQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            QT+ VID+Y K   +  + A +   EV  +V+ +  S
Sbjct: 154 VQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191


>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
           Conformation
          Length = 196

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 37/217 (17%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTP---LGIKAKEAMDKGELV 90
           + ++G PG+GKGTQ   I ++Y   HL+ G++LR     K P    G   ++ + +G++V
Sbjct: 6   VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRD--ERKNPDSQYGELIEKYIKEGKIV 63

Query: 91  SDDLVVGII----DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
             ++ + ++    DQ M   + +  F++DGFPR     +  ++ ++ +   +  VL F  
Sbjct: 64  PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD-VSFVLFFDC 122

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
           ++ I  ER   R    +SGRS                         DD  + L+ R++ +
Sbjct: 123 NNEICIERCLER--GKSSGRS-------------------------DDNRESLEKRIQTY 155

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
            + T+P+ID Y + G + ++ A K   EV  EV ++ 
Sbjct: 156 LQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192


>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
          Kinase Of Streptococcus Pneumoniae
          Length = 236

 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA--VAAKTPLGIKAKEAM 84
          ++ + GP  SGK T + +I  ++   +L TG M R+A  +A K  LG++  EA+
Sbjct: 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEAL 71


>pdb|1OSB|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
           Free Structure.
 pdb|1OSB|C Chain C, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
           Free Structure
          Length = 293

 Score = 30.4 bits (67), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 11/54 (20%)

Query: 194 DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE---VQKVLS 244
           D A + + ++E F K+TE + ++YA +G+         P  V++E     KVLS
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL--------DPNSVSLEQKQAAKVLS 265


>pdb|2CDM|A Chain A, The Structure Of Trwc Complexed With A 27-Mer Dna
           Comprising The Recognition Hairpin And The Cleavage Site
 pdb|2CDM|C Chain C, The Structure Of Trwc Complexed With A 27-Mer Dna
           Comprising The Recognition Hairpin And The Cleavage Site
          Length = 293

 Score = 30.4 bits (67), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 11/54 (20%)

Query: 194 DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE---VQKVLS 244
           D A + + ++E F K+TE + ++YA +G+         P  V++E     KVLS
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL--------DPNSVSLEQKQAAKVLS 265


>pdb|1OMH|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
           Free Structure.
 pdb|1QX0|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
           Bound Structure
 pdb|1S6M|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
           Bound Structure
 pdb|1ZM5|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna,
           Cooper- Bound Structure
          Length = 293

 Score = 30.4 bits (67), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 11/54 (20%)

Query: 194 DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE---VQKVLS 244
           D A + + ++E F K+TE + ++YA +G+         P  V++E     KVLS
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL--------DPNSVSLEQKQAAKVLS 265


>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
          Length = 312

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54
          K   +P + L+L GPPG GK T + VI  E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61


>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
          Length = 318

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54
          K   +P + L+L GPPG GK T + VI  E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61


>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
           From Sphingomonas Sp. A1
 pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
           From Sphingomonas Sp. A1
          Length = 424

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 141 VLNFAIDDSILEERITGRWIHPASGRSY--HTKFAPPKVHGFDDVTGEPLIQRKDDTAQV 198
           V N+A+     E R+  + I    G SY  ++ F+P K  G   +  E   ++ D+  QV
Sbjct: 264 VGNYALGGGGFESRLM-KEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQV 322

Query: 199 LKSRLEAFHKQ 209
               L+AF ++
Sbjct: 323 ANDTLDAFLRE 333


>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
 pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
          Of Adp
 pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
          Of Adp
 pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
          Of Adp
          Length = 355

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 6  VALEDVPSVDMMTELLRR-----------FKCSSKPDKRLVLIGPPGSGK 44
          V  EDV  ++   E L+            FK + KP   ++L GPPG+GK
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGK 97


>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
 pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
          Length = 324

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54
          K   +P + L+L GPPG GK T + VI  E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61


>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
          Of Atpgammas
 pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
          Of Atpgammas
 pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
          Of Atpgammas
          Length = 340

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 6  VALEDVPSVDMMTELLRR-----------FKCSSKPDKRLVLIGPPGSGK 44
          V  EDV  ++   E L+            FK + KP   ++L GPPG+GK
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGK 82


>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
          State
          Length = 322

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 6  VALEDVPSVDMMTELLRR-----------FKCSSKPDKRLVLIGPPGSGK 44
          V  EDV  ++   E L+            FK + KP   ++L GPPG+GK
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGK 64


>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
          Length = 1321

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 19   ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55
            E+L+    S +P + L L+GP G GK T   +++  Y
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129


>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
          Length = 331

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 6  VALEDVPSVDMMTELLRR-----------FKCSSKPDKRLVLIGPPGSGK 44
          V  EDV  ++   E L+            FK + KP   ++L GPPG+GK
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGK 73


>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
           Eutrophus At 1.75 A Resolution
 pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
           Eutrophus At 1.75 A Resolution
          Length = 403

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 4   SAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63
           ++VA+ DVP++ +  + +R++  S  P+ R   I     G G Q P         H+  G
Sbjct: 191 TSVAI-DVPALGL--QQIRQYSLSDMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVG 247

Query: 64  DMLRSA---------VAAKTPL 76
           D ++ A         V AKTP+
Sbjct: 248 DQVKLAAPYGSFHIDVDAKTPI 269


>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh
 pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh
 pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh Adp Complex
 pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh Adp Complex
 pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh Adp Complex
 pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh Adp Complex
 pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
          Protease, Ftsh Adp Complex
          Length = 268

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 1  MASSAVALEDVPS-VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59
          MA +  A E+V   VD +    R     +K  K ++L+GPPG+GK   +  +  E  +  
Sbjct: 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72

Query: 60 LATG 63
           + G
Sbjct: 73 FSMG 76


>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
           In Complex With Miconazole
 pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
           In Complex With Econazole
 pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
           In Complex With Econazole
 pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
           In Complex With Ketoconazole
 pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
           In Complex With Ketoconazole
          Length = 403

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 4   SAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63
           ++VA+ DVP++ +  + +R++  S  P+ R   I     G G Q P         H+  G
Sbjct: 191 TSVAI-DVPALGL--QQIRQYSLSDMPNGRSYRISVKREGGGPQPPGYVSNLLHDHVNVG 247

Query: 64  DMLRSA---------VAAKTPL 76
           D ++ A         V AKTP+
Sbjct: 248 DQVKLAAPYGSFHIDVDAKTPI 269


>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
           Monooxygenase (Np_373108.1) From Staphylococcus Aureus
           Mu50 At 2.40 A Resolution
          Length = 369

 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 133 KQGTKIDKVLNFAIDDSILEERITGRW-IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191
           KQG +I+  +++ + D        G++ I   SG+S HT   P    GF D T  P++Q+
Sbjct: 225 KQGARIEXNVHYTVKDIDFNN---GQYHISFDSGQSVHTPHEPILATGF-DATKNPIVQQ 280


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,432,604
Number of Sequences: 62578
Number of extensions: 309040
Number of successful extensions: 977
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 78
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)