Query 025970
Match_columns 245
No_of_seqs 119 out of 1493
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.6E-48 3.5E-53 317.1 29.5 241 4-244 4-244 (244)
2 PRK14526 adenylate kinase; Pro 100.0 5.9E-41 1.3E-45 269.3 25.3 208 32-244 1-208 (211)
3 PRK00279 adk adenylate kinase; 100.0 1E-40 2.2E-45 270.3 26.7 214 32-245 1-214 (215)
4 PLN02459 probable adenylate ki 100.0 1.5E-40 3.3E-45 271.5 26.0 222 16-244 12-250 (261)
5 PRK14529 adenylate kinase; Pro 100.0 2.1E-40 4.6E-45 266.7 24.3 212 32-244 1-223 (223)
6 TIGR01351 adk adenylate kinase 100.0 1.2E-39 2.6E-44 263.1 26.2 208 34-244 2-210 (210)
7 PTZ00088 adenylate kinase 1; P 100.0 3.1E-38 6.8E-43 256.2 25.8 211 28-243 3-229 (229)
8 PRK14530 adenylate kinase; Pro 100.0 6.7E-37 1.5E-41 247.9 25.8 206 31-245 3-213 (215)
9 KOG3079 Uridylate kinase/adeny 100.0 1.5E-35 3.2E-40 225.4 22.8 188 27-244 4-192 (195)
10 KOG3078 Adenylate kinase [Nucl 100.0 9.4E-36 2E-40 237.3 20.1 215 25-244 9-223 (235)
11 PRK13808 adenylate kinase; Pro 100.0 1.7E-34 3.8E-39 243.6 24.5 192 32-244 1-192 (333)
12 PRK14528 adenylate kinase; Pro 100.0 1.1E-33 2.4E-38 223.9 24.6 185 32-243 2-186 (186)
13 PRK14532 adenylate kinase; Pro 100.0 3.1E-33 6.8E-38 222.0 25.0 186 32-244 1-186 (188)
14 PRK14531 adenylate kinase; Pro 100.0 4.7E-33 1E-37 220.0 24.2 180 32-243 3-182 (183)
15 cd01428 ADK Adenylate kinase ( 100.0 1.1E-32 2.5E-37 219.6 23.3 194 33-235 1-194 (194)
16 PRK14527 adenylate kinase; Pro 100.0 4.7E-32 1E-36 215.7 24.9 189 27-243 2-190 (191)
17 PLN02842 nucleotide kinase 100.0 1.5E-32 3.3E-37 242.1 23.2 199 36-244 2-201 (505)
18 PRK02496 adk adenylate kinase; 100.0 1.5E-31 3.3E-36 211.6 25.1 182 32-244 2-183 (184)
19 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 4.7E-31 1E-35 208.6 24.1 182 33-243 1-182 (183)
20 PLN02200 adenylate kinase fami 100.0 5E-31 1.1E-35 215.3 24.3 183 29-244 41-223 (234)
21 COG0563 Adk Adenylate kinase a 100.0 6E-30 1.3E-34 200.0 20.7 177 32-243 1-177 (178)
22 PF00406 ADK: Adenylate kinase 100.0 1.5E-29 3.3E-34 193.9 18.7 150 36-221 1-150 (151)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 3.6E-27 7.9E-32 186.9 24.6 183 31-244 3-186 (188)
24 PRK13974 thymidylate kinase; P 99.8 4.9E-18 1.1E-22 137.2 13.7 178 30-244 2-205 (212)
25 PRK01184 hypothetical protein; 99.8 2E-16 4.4E-21 125.0 20.6 170 32-244 2-177 (184)
26 PRK03839 putative kinase; Prov 99.7 8.5E-17 1.8E-21 126.7 16.4 151 32-244 1-152 (180)
27 PRK13973 thymidylate kinase; P 99.7 4.3E-16 9.4E-21 125.9 18.7 177 31-244 3-205 (213)
28 PRK06217 hypothetical protein; 99.7 5.1E-16 1.1E-20 122.6 16.4 171 32-245 2-179 (183)
29 PRK08356 hypothetical protein; 99.7 2.5E-16 5.5E-21 125.6 13.4 118 30-159 4-136 (195)
30 COG0703 AroK Shikimate kinase 99.7 9.6E-16 2.1E-20 117.5 14.5 163 31-244 2-167 (172)
31 PRK14730 coaE dephospho-CoA ki 99.7 2.4E-15 5.3E-20 119.7 15.8 164 32-244 2-193 (195)
32 PRK13949 shikimate kinase; Pro 99.7 4.9E-15 1.1E-19 115.4 17.0 162 33-243 3-169 (169)
33 COG0125 Tmk Thymidylate kinase 99.7 1E-14 2.2E-19 116.4 18.6 175 30-244 2-202 (208)
34 PRK13975 thymidylate kinase; P 99.7 1.1E-14 2.5E-19 116.0 18.5 173 31-244 2-189 (196)
35 PRK00081 coaE dephospho-CoA ki 99.7 2.6E-15 5.7E-20 119.6 13.3 163 32-244 3-192 (194)
36 COG1102 Cmk Cytidylate kinase 99.6 1.1E-14 2.4E-19 109.3 14.6 111 32-159 1-112 (179)
37 PRK13948 shikimate kinase; Pro 99.6 3.3E-14 7.1E-19 111.7 17.3 111 29-157 8-122 (182)
38 PHA02530 pseT polynucleotide k 99.6 3.3E-15 7.2E-20 126.9 12.6 169 31-234 2-171 (300)
39 PRK03731 aroL shikimate kinase 99.6 3.3E-14 7.1E-19 111.0 17.2 110 32-159 3-115 (171)
40 PRK14734 coaE dephospho-CoA ki 99.6 1.2E-14 2.5E-19 116.3 14.6 164 32-244 2-193 (200)
41 PLN02924 thymidylate kinase 99.6 1.7E-14 3.8E-19 116.7 14.9 174 28-244 13-202 (220)
42 PLN02422 dephospho-CoA kinase 99.6 4.2E-14 9E-19 114.7 15.6 163 33-244 3-193 (232)
43 PRK04040 adenylate kinase; Pro 99.6 1.5E-13 3.3E-18 108.7 18.1 176 31-244 2-188 (188)
44 COG0237 CoaE Dephospho-CoA kin 99.6 2.6E-14 5.6E-19 113.6 13.6 165 31-244 2-191 (201)
45 PRK13947 shikimate kinase; Pro 99.6 5.6E-14 1.2E-18 109.6 14.9 109 33-159 3-115 (171)
46 PRK00625 shikimate kinase; Pro 99.6 6.2E-14 1.3E-18 109.4 15.0 117 32-159 1-117 (173)
47 COG1936 Predicted nucleotide k 99.6 5.3E-14 1.2E-18 107.0 14.1 154 32-244 1-155 (180)
48 PRK00698 tmk thymidylate kinas 99.6 3.5E-14 7.6E-19 113.9 13.8 175 30-244 2-201 (205)
49 PRK00131 aroK shikimate kinase 99.6 7.3E-14 1.6E-18 109.0 14.8 115 29-159 2-118 (175)
50 PRK08233 hypothetical protein; 99.6 2.3E-14 5.1E-19 112.7 12.1 169 30-244 2-176 (182)
51 KOG3347 Predicted nucleotide k 99.6 6E-14 1.3E-18 103.8 13.2 159 30-243 6-164 (176)
52 PRK14731 coaE dephospho-CoA ki 99.6 3.6E-14 7.7E-19 114.3 13.1 166 30-244 4-201 (208)
53 PRK14733 coaE dephospho-CoA ki 99.6 2.2E-13 4.7E-18 108.7 17.2 167 29-244 4-197 (204)
54 cd01672 TMPK Thymidine monopho 99.6 5.3E-13 1.1E-17 106.3 19.3 174 32-245 1-200 (200)
55 TIGR00152 dephospho-CoA kinase 99.6 3.1E-14 6.8E-19 112.9 12.1 160 33-240 1-187 (188)
56 PLN02199 shikimate kinase 99.6 3.3E-13 7.2E-18 112.1 18.3 122 17-157 89-214 (303)
57 PRK13946 shikimate kinase; Pro 99.6 1.3E-13 2.9E-18 108.9 15.2 167 28-244 7-175 (184)
58 TIGR00041 DTMP_kinase thymidyl 99.6 2.7E-13 5.8E-18 108.0 16.8 121 31-159 3-149 (195)
59 TIGR02173 cyt_kin_arch cytidyl 99.6 4.8E-13 1E-17 104.1 18.0 112 32-159 1-113 (171)
60 PRK05057 aroK shikimate kinase 99.6 1.2E-13 2.6E-18 107.9 14.4 162 31-245 4-171 (172)
61 PRK08118 topology modulation p 99.6 1E-13 2.2E-18 107.8 13.8 100 32-160 2-101 (167)
62 KOG3220 Similar to bacterial d 99.6 7.4E-14 1.6E-18 108.3 12.8 162 33-243 3-192 (225)
63 PRK07933 thymidylate kinase; V 99.6 8.7E-14 1.9E-18 112.3 13.9 179 32-243 1-211 (213)
64 PRK04182 cytidylate kinase; Pr 99.6 3.5E-13 7.6E-18 105.8 17.0 111 32-159 1-113 (180)
65 PTZ00451 dephospho-CoA kinase; 99.6 2.9E-13 6.2E-18 110.8 16.1 164 32-243 2-205 (244)
66 PRK06762 hypothetical protein; 99.5 2.6E-13 5.6E-18 105.4 15.0 159 31-243 2-162 (166)
67 KOG3354 Gluconate kinase [Carb 99.5 1.5E-13 3.3E-18 102.2 11.9 163 33-243 14-186 (191)
68 PRK14021 bifunctional shikimat 99.5 5.4E-13 1.2E-17 121.5 17.9 118 28-158 3-123 (542)
69 COG3265 GntK Gluconate kinase 99.5 2.9E-13 6.4E-18 100.1 11.9 154 37-244 1-158 (161)
70 PF01121 CoaE: Dephospho-CoA k 99.5 1.3E-13 2.9E-18 108.1 10.3 153 32-234 1-180 (180)
71 PRK14732 coaE dephospho-CoA ki 99.5 2.9E-13 6.3E-18 107.8 12.0 162 33-244 1-189 (196)
72 cd02022 DPCK Dephospho-coenzym 99.5 9.9E-13 2.1E-17 103.5 14.8 116 33-159 1-143 (179)
73 TIGR01313 therm_gnt_kin carboh 99.5 1.3E-12 2.9E-17 101.1 15.2 157 34-243 1-161 (163)
74 cd02030 NDUO42 NADH:Ubiquinone 99.5 1.2E-12 2.5E-17 106.3 14.8 178 33-241 1-217 (219)
75 PRK08154 anaerobic benzoate ca 99.5 2.1E-12 4.6E-17 110.0 15.9 131 15-159 114-248 (309)
76 PRK03333 coaE dephospho-CoA ki 99.5 1.7E-12 3.7E-17 113.9 14.5 162 33-244 3-191 (395)
77 PRK13976 thymidylate kinase; P 99.5 9.8E-12 2.1E-16 100.0 17.7 119 32-158 1-145 (209)
78 PF13671 AAA_33: AAA domain; P 99.4 7.6E-13 1.7E-17 100.0 10.1 117 33-160 1-120 (143)
79 PF01202 SKI: Shikimate kinase 99.4 3.1E-12 6.6E-17 98.6 12.9 103 40-159 1-106 (158)
80 PF02223 Thymidylate_kin: Thym 99.4 2.3E-12 5E-17 101.9 11.7 165 36-239 1-186 (186)
81 cd00464 SK Shikimate kinase (S 99.4 5.4E-12 1.2E-16 96.5 13.3 109 34-159 2-113 (154)
82 COG1428 Deoxynucleoside kinase 99.4 5.2E-12 1.1E-16 99.3 12.0 31 30-60 3-33 (216)
83 cd01673 dNK Deoxyribonucleosid 99.4 2.3E-11 4.9E-16 96.8 16.1 121 33-159 1-146 (193)
84 TIGR03574 selen_PSTK L-seryl-t 99.4 2.7E-11 5.9E-16 100.2 16.8 112 33-159 1-117 (249)
85 PRK10078 ribose 1,5-bisphospho 99.4 1.7E-11 3.6E-16 97.1 12.9 160 32-244 3-175 (186)
86 PRK07261 topology modulation p 99.3 3.8E-12 8.2E-17 99.4 8.1 101 32-160 1-101 (171)
87 cd02021 GntK Gluconate kinase 99.3 3.1E-11 6.7E-16 92.1 12.7 114 33-159 1-119 (150)
88 PRK09825 idnK D-gluconate kina 99.3 4.8E-11 1E-15 93.5 13.5 158 31-244 3-167 (176)
89 PRK12339 2-phosphoglycerate ki 99.3 1.2E-10 2.6E-15 92.7 15.6 123 30-159 2-141 (197)
90 PRK14738 gmk guanylate kinase; 99.3 6.6E-11 1.4E-15 95.2 13.9 167 27-244 9-193 (206)
91 cd02020 CMPK Cytidine monophos 99.3 7.9E-12 1.7E-16 94.7 7.8 103 33-158 1-103 (147)
92 PRK13951 bifunctional shikimat 99.3 6.2E-11 1.3E-15 106.6 14.8 108 32-158 1-112 (488)
93 PRK06547 hypothetical protein; 99.3 1.7E-11 3.6E-16 95.6 9.5 127 27-159 11-139 (172)
94 smart00072 GuKc Guanylate kina 99.3 1.1E-11 2.4E-16 97.9 8.6 163 31-244 2-181 (184)
95 cd00227 CPT Chloramphenicol (C 99.3 2.2E-10 4.7E-15 89.8 15.0 121 31-159 2-132 (175)
96 KOG3327 Thymidylate kinase/ade 99.3 3.7E-10 8.1E-15 86.7 14.5 177 29-244 3-194 (208)
97 COG0283 Cmk Cytidylate kinase 99.2 6.8E-10 1.5E-14 87.7 14.6 40 31-70 4-43 (222)
98 PRK13477 bifunctional pantoate 99.2 3.6E-10 7.8E-15 101.5 14.6 41 29-69 282-322 (512)
99 TIGR02322 phosphon_PhnN phosph 99.2 7.4E-10 1.6E-14 87.0 14.8 160 32-244 2-177 (179)
100 PRK05480 uridine/cytidine kina 99.2 3E-10 6.5E-15 91.5 12.3 39 29-67 4-45 (209)
101 PRK06696 uridine kinase; Valid 99.2 1.5E-10 3.3E-15 94.2 10.1 54 14-67 4-63 (223)
102 PF13207 AAA_17: AAA domain; P 99.2 1.9E-11 4.1E-16 89.7 3.5 34 33-66 1-34 (121)
103 PRK05541 adenylylsulfate kinas 99.2 9.6E-10 2.1E-14 86.1 13.2 111 29-157 5-121 (176)
104 PRK11545 gntK gluconate kinase 99.1 5.5E-10 1.2E-14 86.5 11.0 154 37-244 1-159 (163)
105 PRK00300 gmk guanylate kinase; 99.1 2E-09 4.2E-14 86.4 14.3 166 29-244 3-183 (205)
106 PRK05537 bifunctional sulfate 99.1 1.3E-09 2.9E-14 99.7 14.7 125 19-156 380-510 (568)
107 COG0194 Gmk Guanylate kinase [ 99.1 7.1E-10 1.5E-14 85.8 10.8 161 30-243 3-180 (191)
108 PRK07667 uridine kinase; Provi 99.1 5E-10 1.1E-14 89.1 10.1 51 18-68 4-59 (193)
109 COG4088 Predicted nucleotide k 99.1 3.2E-09 7E-14 83.2 14.0 112 32-158 2-122 (261)
110 TIGR00017 cmk cytidylate kinas 99.1 4.8E-09 1E-13 84.9 14.6 39 31-69 2-40 (217)
111 COG2019 AdkA Archaeal adenylat 99.1 8.1E-09 1.8E-13 78.3 14.6 120 31-157 4-129 (189)
112 TIGR01663 PNK-3'Pase polynucle 99.1 1.4E-09 3.1E-14 98.0 12.2 105 28-160 366-470 (526)
113 PRK00023 cmk cytidylate kinase 99.1 3.6E-09 7.8E-14 86.2 13.5 39 31-69 4-42 (225)
114 PRK14737 gmk guanylate kinase; 99.1 2.3E-09 5E-14 84.7 11.7 165 29-244 2-183 (186)
115 COG0645 Predicted kinase [Gene 99.1 7.7E-09 1.7E-13 78.8 13.9 122 32-160 2-126 (170)
116 PRK12338 hypothetical protein; 99.1 1.4E-08 3E-13 86.0 16.8 43 30-72 3-45 (319)
117 PRK05416 glmZ(sRNA)-inactivati 99.1 2.5E-08 5.4E-13 83.8 18.2 100 30-158 5-106 (288)
118 TIGR00235 udk uridine kinase. 99.0 1.7E-09 3.7E-14 87.0 9.9 41 26-66 1-44 (207)
119 PRK00889 adenylylsulfate kinas 99.0 4.5E-09 9.7E-14 82.3 11.4 36 30-65 3-43 (175)
120 TIGR00455 apsK adenylylsulfate 99.0 1.4E-08 3.1E-13 80.1 13.1 112 29-154 16-132 (184)
121 PRK11860 bifunctional 3-phosph 99.0 3.4E-08 7.3E-13 92.5 17.6 42 28-69 439-480 (661)
122 PF13238 AAA_18: AAA domain; P 99.0 4.4E-09 9.6E-14 77.6 9.2 109 34-159 1-113 (129)
123 PRK03846 adenylylsulfate kinas 99.0 9.9E-09 2.1E-13 82.0 11.8 113 27-154 20-138 (198)
124 TIGR03263 guanyl_kin guanylate 99.0 3.6E-09 7.8E-14 83.1 8.9 164 31-244 1-179 (180)
125 PHA03132 thymidine kinase; Pro 99.0 1.1E-08 2.5E-13 92.6 12.8 130 30-159 256-423 (580)
126 KOG3877 NADH:ubiquinone oxidor 98.9 1.6E-07 3.6E-12 76.7 16.7 33 29-61 69-101 (393)
127 PF07931 CPT: Chloramphenicol 98.9 5.8E-09 1.3E-13 81.2 8.1 113 32-159 2-131 (174)
128 PF01583 APS_kinase: Adenylyls 98.9 1.2E-08 2.5E-13 77.8 9.3 110 30-155 1-117 (156)
129 cd02024 NRK1 Nicotinamide ribo 98.9 4.6E-09 9.9E-14 82.8 7.1 35 33-67 1-36 (187)
130 cd02023 UMPK Uridine monophosp 98.9 2.5E-08 5.4E-13 79.6 11.2 34 33-66 1-37 (198)
131 COG0572 Udk Uridine kinase [Nu 98.9 1.5E-08 3.2E-13 80.9 9.0 122 29-160 6-150 (218)
132 PF06414 Zeta_toxin: Zeta toxi 98.9 1E-08 2.2E-13 82.0 8.1 121 29-160 13-143 (199)
133 TIGR03575 selen_PSTK_euk L-ser 98.9 1.5E-07 3.3E-12 80.6 15.5 126 33-159 1-176 (340)
134 PF08433 KTI12: Chromatin asso 98.9 6.1E-08 1.3E-12 80.9 12.8 110 32-159 2-120 (270)
135 cd02027 APSK Adenosine 5'-phos 98.9 4.7E-08 1E-12 74.5 11.1 109 33-157 1-116 (149)
136 PRK09518 bifunctional cytidyla 98.8 7.6E-08 1.6E-12 90.9 14.7 38 32-69 2-39 (712)
137 PRK04220 2-phosphoglycerate ki 98.8 3.2E-07 6.9E-12 77.1 15.9 44 27-71 88-132 (301)
138 PRK05506 bifunctional sulfate 98.8 4.6E-08 9.9E-13 91.3 11.7 114 27-154 456-574 (632)
139 PRK07429 phosphoribulokinase; 98.8 1.3E-07 2.9E-12 80.9 12.9 39 27-65 4-45 (327)
140 PF03668 ATP_bind_2: P-loop AT 98.8 1.4E-06 3.1E-11 72.3 18.2 145 33-243 3-154 (284)
141 PTZ00301 uridine kinase; Provi 98.8 7.7E-08 1.7E-12 77.4 10.1 36 31-66 3-45 (210)
142 PRK12269 bifunctional cytidyla 98.7 4.4E-07 9.5E-12 86.5 16.4 40 31-70 34-73 (863)
143 PRK12337 2-phosphoglycerate ki 98.7 1.7E-06 3.7E-11 76.5 18.8 44 27-71 251-295 (475)
144 COG0529 CysC Adenylylsulfate k 98.7 1.4E-07 3.1E-12 72.3 10.5 113 26-154 18-137 (197)
145 PRK09270 nucleoside triphospha 98.7 1.5E-07 3.4E-12 76.8 11.6 42 15-56 14-58 (229)
146 COG4639 Predicted kinase [Gene 98.7 2.2E-07 4.7E-12 69.8 11.1 114 32-158 3-117 (168)
147 cd02019 NK Nucleoside/nucleoti 98.7 8.4E-08 1.8E-12 63.2 6.3 23 33-55 1-23 (69)
148 PLN02348 phosphoribulokinase 98.6 2E-07 4.4E-12 80.8 10.0 30 27-56 45-74 (395)
149 PF01591 6PF2K: 6-phosphofruct 98.6 6.6E-07 1.4E-11 72.3 11.5 154 28-214 9-179 (222)
150 COG1660 Predicted P-loop-conta 98.6 6.6E-06 1.4E-10 66.9 16.5 146 33-244 3-156 (286)
151 cd02025 PanK Pantothenate kina 98.6 3E-07 6.5E-12 74.6 9.0 34 33-66 1-41 (220)
152 PHA00729 NTP-binding motif con 98.6 8.4E-07 1.8E-11 71.7 10.8 114 30-160 16-141 (226)
153 PRK05439 pantothenate kinase; 98.6 8.9E-08 1.9E-12 81.1 5.3 40 27-66 82-128 (311)
154 cd02026 PRK Phosphoribulokinas 98.5 1.5E-06 3.2E-11 72.8 11.7 33 33-65 1-36 (273)
155 PF00625 Guanylate_kin: Guanyl 98.5 5.6E-07 1.2E-11 70.9 7.8 26 31-56 2-27 (183)
156 TIGR00554 panK_bact pantothena 98.5 2.4E-07 5.3E-12 77.9 5.9 40 27-66 58-104 (290)
157 PF00485 PRK: Phosphoribulokin 98.4 1.5E-07 3.2E-12 74.9 3.4 24 33-56 1-24 (194)
158 PLN02772 guanylate kinase 98.4 4.2E-06 9.1E-11 72.7 12.4 27 30-56 134-160 (398)
159 cd02028 UMPK_like Uridine mono 98.4 6.2E-07 1.3E-11 70.5 6.8 35 33-67 1-40 (179)
160 COG2074 2-phosphoglycerate kin 98.4 3.1E-05 6.8E-10 62.9 14.9 59 11-71 70-129 (299)
161 COG3709 Uncharacterized compon 98.3 8E-06 1.7E-10 61.9 10.3 66 139-244 116-181 (192)
162 PRK15453 phosphoribulokinase; 98.3 4.1E-06 8.9E-11 69.7 9.0 38 29-66 3-45 (290)
163 KOG3308 Uncharacterized protei 98.3 9.4E-06 2E-10 63.6 10.2 121 30-159 3-149 (225)
164 PF13189 Cytidylate_kin2: Cyti 98.2 5.7E-06 1.2E-10 65.0 8.1 116 33-159 1-135 (179)
165 TIGR03707 PPK2_P_aer polyphosp 98.1 0.00017 3.6E-09 58.7 14.5 174 27-234 27-209 (230)
166 TIGR03709 PPK2_rel_1 polyphosp 98.1 0.00023 5E-09 59.0 15.3 173 28-234 53-234 (264)
167 PF00004 AAA: ATPase family as 98.1 2.7E-06 5.9E-11 62.7 3.6 29 34-62 1-29 (132)
168 PLN02165 adenylate isopentenyl 98.1 3.5E-06 7.5E-11 71.9 4.2 39 27-65 39-77 (334)
169 PF05191 ADK_lid: Adenylate ki 98.1 8.8E-07 1.9E-11 50.0 0.4 36 158-193 1-36 (36)
170 TIGR00150 HI0065_YjeE ATPase, 98.1 8.9E-06 1.9E-10 60.5 5.7 47 12-58 3-49 (133)
171 PTZ00322 6-phosphofructo-2-kin 98.0 2.1E-05 4.5E-10 74.0 9.0 118 30-158 214-346 (664)
172 COG4185 Uncharacterized protei 98.0 0.00025 5.4E-09 53.8 12.7 115 31-159 2-118 (187)
173 TIGR03708 poly_P_AMP_trns poly 98.0 0.00034 7.5E-09 62.9 15.9 171 28-232 37-216 (493)
174 PF08303 tRNA_lig_kinase: tRNA 98.0 0.00023 5.1E-09 54.4 12.6 103 34-159 2-119 (168)
175 PRK00091 miaA tRNA delta(2)-is 98.0 5.6E-06 1.2E-10 70.3 4.2 36 30-65 3-38 (307)
176 KOG4235 Mitochondrial thymidin 98.0 0.00042 9.1E-09 54.3 13.9 33 129-161 145-177 (244)
177 PHA03136 thymidine kinase; Pro 98.0 0.00039 8.5E-09 60.1 15.2 25 136-160 190-214 (378)
178 COG1072 CoaA Panthothenate kin 98.0 1.1E-05 2.5E-10 66.3 5.3 29 27-55 78-106 (283)
179 PRK09169 hypothetical protein; 98.0 0.00011 2.4E-09 74.8 13.0 108 31-158 2110-2220(2316)
180 PLN02318 phosphoribulokinase/u 98.0 4.6E-05 1E-09 69.5 9.5 39 27-65 61-100 (656)
181 TIGR02881 spore_V_K stage V sp 97.9 9.8E-05 2.1E-09 61.5 9.7 28 28-55 39-66 (261)
182 PRK05800 cobU adenosylcobinami 97.9 1.3E-05 2.8E-10 62.4 4.0 33 32-64 2-36 (170)
183 COG1618 Predicted nucleotide k 97.9 1.2E-05 2.6E-10 61.0 3.7 28 29-56 3-30 (179)
184 cd02029 PRK_like Phosphoribulo 97.9 0.00024 5.2E-09 58.8 11.4 35 33-67 1-40 (277)
185 PRK12724 flagellar biosynthesi 97.9 0.00021 4.5E-09 63.0 11.7 110 30-148 222-344 (432)
186 PHA02575 1 deoxynucleoside mon 97.9 2.3E-05 4.9E-10 63.1 5.1 39 32-71 1-40 (227)
187 CHL00181 cbbX CbbX; Provisiona 97.9 0.00013 2.7E-09 61.7 9.8 27 29-55 57-83 (287)
188 PLN02840 tRNA dimethylallyltra 97.8 1.5E-05 3.2E-10 70.1 3.9 36 29-64 19-54 (421)
189 PF01745 IPT: Isopentenyl tran 97.8 2.1E-05 4.6E-10 62.5 4.3 123 33-158 3-138 (233)
190 PF05496 RuvB_N: Holliday junc 97.8 4E-05 8.7E-10 61.7 5.7 32 29-60 48-79 (233)
191 PF13521 AAA_28: AAA domain; P 97.8 1.4E-05 3E-10 61.7 2.9 35 33-70 1-35 (163)
192 PF03976 PPK2: Polyphosphate k 97.8 0.00022 4.7E-09 58.1 9.5 172 27-232 27-207 (228)
193 PF13173 AAA_14: AAA domain 97.8 0.00038 8.2E-09 51.4 10.0 99 31-154 2-104 (128)
194 TIGR00390 hslU ATP-dependent p 97.8 2.6E-05 5.7E-10 68.4 4.0 34 30-63 46-79 (441)
195 TIGR00174 miaA tRNA isopenteny 97.8 2.4E-05 5.2E-10 65.8 3.6 33 33-65 1-33 (287)
196 PLN02748 tRNA dimethylallyltra 97.7 3.3E-05 7.2E-10 69.0 4.2 36 29-64 20-55 (468)
197 COG4619 ABC-type uncharacteriz 97.7 1.9E-05 4.1E-10 60.5 2.3 36 20-55 18-53 (223)
198 KOG3062 RNA polymerase II elon 97.7 0.00023 5.1E-09 56.9 8.4 24 32-55 2-25 (281)
199 PRK06761 hypothetical protein; 97.7 3E-05 6.6E-10 64.9 3.4 27 31-57 3-29 (282)
200 smart00382 AAA ATPases associa 97.7 3.6E-05 7.9E-10 56.6 3.5 28 31-58 2-29 (148)
201 PRK12723 flagellar biosynthesi 97.7 0.00079 1.7E-08 59.1 12.1 26 30-55 173-198 (388)
202 COG1126 GlnQ ABC-type polar am 97.7 1.8E-05 3.8E-10 63.0 1.5 33 20-52 17-49 (240)
203 PRK05201 hslU ATP-dependent pr 97.7 4.5E-05 9.8E-10 67.0 4.1 34 31-64 50-83 (443)
204 smart00763 AAA_PrkA PrkA AAA d 97.6 8.8E-05 1.9E-09 64.0 5.5 29 29-57 76-104 (361)
205 KOG0744 AAA+-type ATPase [Post 97.6 4.1E-05 8.9E-10 64.4 3.1 29 29-57 175-203 (423)
206 COG0324 MiaA tRNA delta(2)-iso 97.6 7E-05 1.5E-09 63.2 4.5 36 30-65 2-37 (308)
207 TIGR02640 gas_vesic_GvpN gas v 97.6 6.7E-05 1.5E-09 62.6 4.3 44 17-60 7-50 (262)
208 PLN00020 ribulose bisphosphate 97.6 0.00011 2.3E-09 63.5 5.4 41 28-68 145-187 (413)
209 KOG0730 AAA+-type ATPase [Post 97.6 0.00041 9E-09 63.4 9.3 127 28-159 465-614 (693)
210 COG0466 Lon ATP-dependent Lon 97.6 0.00011 2.5E-09 67.6 5.7 45 17-61 336-380 (782)
211 PF07728 AAA_5: AAA domain (dy 97.6 6.5E-05 1.4E-09 56.2 3.5 28 34-61 2-29 (139)
212 PF02367 UPF0079: Uncharacteri 97.6 6.6E-05 1.4E-09 55.0 3.3 38 21-58 5-42 (123)
213 COG2256 MGS1 ATPase related to 97.6 0.00034 7.5E-09 60.6 8.0 32 32-63 49-80 (436)
214 PF03308 ArgK: ArgK protein; 97.6 0.00011 2.4E-09 60.3 4.7 39 17-55 15-53 (266)
215 PF03215 Rad17: Rad17 cell cyc 97.6 0.00016 3.4E-09 65.8 6.2 35 27-61 41-75 (519)
216 PF13401 AAA_22: AAA domain; P 97.6 0.00019 4.1E-09 52.9 5.6 26 30-55 3-28 (131)
217 PRK10646 ADP-binding protein; 97.5 0.00021 4.5E-09 54.4 5.5 46 12-57 9-54 (153)
218 TIGR02880 cbbX_cfxQ probable R 97.5 0.0011 2.3E-08 56.0 10.3 26 30-55 57-82 (284)
219 COG1117 PstB ABC-type phosphat 97.5 8.5E-05 1.8E-09 59.1 3.2 36 19-54 21-56 (253)
220 KOG2004 Mitochondrial ATP-depe 97.5 0.00016 3.6E-09 66.6 5.4 49 17-65 424-474 (906)
221 PF03266 NTPase_1: NTPase; In 97.5 0.00012 2.6E-09 56.9 4.0 23 33-55 1-23 (168)
222 PHA03134 thymidine kinase; Pro 97.5 0.01 2.2E-07 50.7 15.8 26 29-54 11-36 (340)
223 PHA03135 thymidine kinase; Pro 97.5 0.0062 1.3E-07 52.1 14.3 26 29-54 8-33 (343)
224 cd00071 GMPK Guanosine monopho 97.5 9.3E-05 2E-09 55.5 3.0 24 33-56 1-24 (137)
225 cd00009 AAA The AAA+ (ATPases 97.5 0.00015 3.2E-09 53.8 4.1 31 30-60 18-51 (151)
226 TIGR03708 poly_P_AMP_trns poly 97.5 0.0078 1.7E-07 54.4 15.5 159 27-233 295-476 (493)
227 PF06309 Torsin: Torsin; Inte 97.5 0.00029 6.4E-09 51.6 5.4 39 17-55 37-77 (127)
228 TIGR01650 PD_CobS cobaltochela 97.5 0.0001 2.2E-09 62.8 3.4 31 31-61 64-94 (327)
229 PLN02796 D-glycerate 3-kinase 97.5 0.00011 2.4E-09 63.1 3.6 37 29-65 98-139 (347)
230 PRK09435 membrane ATPase/prote 97.5 0.00021 4.6E-09 61.4 5.3 39 17-55 42-80 (332)
231 COG1703 ArgK Putative periplas 97.4 0.00021 4.6E-09 59.6 5.0 39 17-55 37-75 (323)
232 PRK08099 bifunctional DNA-bind 97.4 0.00014 3E-09 64.2 4.1 31 30-60 218-248 (399)
233 COG1116 TauB ABC-type nitrate/ 97.4 7.6E-05 1.7E-09 60.7 2.2 36 19-54 17-52 (248)
234 CHL00195 ycf46 Ycf46; Provisio 97.4 0.00014 3E-09 65.7 4.0 34 29-62 257-290 (489)
235 PRK12377 putative replication 97.4 0.0054 1.2E-07 50.7 13.1 38 31-68 101-143 (248)
236 COG0802 Predicted ATPase or ki 97.4 0.00034 7.4E-09 52.6 5.4 45 13-57 7-51 (149)
237 PRK14729 miaA tRNA delta(2)-is 97.4 0.00019 4E-09 60.8 4.4 35 30-65 3-37 (300)
238 KOG0739 AAA+-type ATPase [Post 97.4 0.0003 6.5E-09 58.8 5.5 43 33-75 168-212 (439)
239 PRK03992 proteasome-activating 97.4 0.00015 3.4E-09 63.9 4.1 39 29-67 163-203 (389)
240 KOG0635 Adenosine 5'-phosphosu 97.4 0.00068 1.5E-08 51.0 6.8 27 29-55 29-55 (207)
241 COG2884 FtsE Predicted ATPase 97.4 0.00015 3.3E-09 56.6 3.4 38 18-55 15-52 (223)
242 PLN03046 D-glycerate 3-kinase; 97.4 0.00015 3.2E-09 63.6 3.7 40 27-66 208-252 (460)
243 PRK11784 tRNA 2-selenouridine 97.4 0.00056 1.2E-08 59.2 7.2 116 29-159 139-257 (345)
244 TIGR00635 ruvB Holliday juncti 97.4 0.00036 7.8E-09 59.3 6.0 32 28-59 27-58 (305)
245 PRK00771 signal recognition pa 97.4 0.00064 1.4E-08 60.6 7.7 27 29-55 93-119 (437)
246 PRK09087 hypothetical protein; 97.4 0.00028 6.1E-09 57.5 4.9 36 31-66 44-79 (226)
247 COG1136 SalX ABC-type antimicr 97.4 0.00011 2.5E-09 59.3 2.4 35 19-53 19-53 (226)
248 COG3842 PotA ABC-type spermidi 97.3 6.8E-05 1.5E-09 64.6 1.0 31 22-52 22-52 (352)
249 PTZ00454 26S protease regulato 97.3 0.00022 4.8E-09 62.9 4.3 34 29-62 177-210 (398)
250 PRK00080 ruvB Holliday junctio 97.3 0.00037 8.1E-09 60.0 5.6 33 28-60 48-80 (328)
251 PRK10751 molybdopterin-guanine 97.3 0.00024 5.3E-09 55.3 4.0 28 29-56 4-31 (173)
252 COG1120 FepC ABC-type cobalami 97.3 0.0001 2.2E-09 60.8 1.9 46 20-65 17-66 (258)
253 COG1124 DppF ABC-type dipeptid 97.3 0.00015 3.3E-09 58.7 2.8 35 19-53 21-55 (252)
254 TIGR01242 26Sp45 26S proteasom 97.3 0.00025 5.3E-09 62.0 4.4 34 29-62 154-187 (364)
255 PRK04195 replication factor C 97.3 0.00041 8.9E-09 62.9 5.9 33 30-62 38-70 (482)
256 PF13245 AAA_19: Part of AAA d 97.3 0.00028 6E-09 47.2 3.6 26 30-55 9-35 (76)
257 TIGR01526 nadR_NMN_Atrans nico 97.3 0.00024 5.2E-09 61.1 4.1 30 31-60 162-191 (325)
258 PF03029 ATP_bind_1: Conserved 97.3 0.00015 3.3E-09 59.6 2.7 21 36-56 1-21 (238)
259 COG1222 RPT1 ATP-dependent 26S 97.3 0.00061 1.3E-08 58.3 6.3 53 28-80 182-236 (406)
260 KOG0733 Nuclear AAA ATPase (VC 97.3 0.00019 4.2E-09 65.1 3.5 34 29-62 221-254 (802)
261 PRK06526 transposase; Provisio 97.3 0.0027 5.9E-08 52.7 10.1 39 30-68 97-140 (254)
262 PRK05342 clpX ATP-dependent pr 97.3 0.00025 5.4E-09 62.8 4.1 33 31-63 108-140 (412)
263 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00013 2.9E-09 52.0 2.0 38 26-65 10-47 (107)
264 PF00448 SRP54: SRP54-type pro 97.3 0.00022 4.8E-09 56.8 3.4 33 31-63 1-38 (196)
265 COG5192 BMS1 GTP-binding prote 97.3 7.7E-05 1.7E-09 66.9 0.8 30 27-56 65-94 (1077)
266 COG3839 MalK ABC-type sugar tr 97.3 8.4E-05 1.8E-09 63.7 1.0 32 21-52 19-50 (338)
267 KOG1970 Checkpoint RAD17-RFC c 97.3 0.00038 8.3E-09 62.4 4.9 35 27-61 106-140 (634)
268 PRK08116 hypothetical protein; 97.3 0.0052 1.1E-07 51.4 11.6 38 31-68 114-156 (268)
269 PF00910 RNA_helicase: RNA hel 97.3 0.00021 4.6E-09 51.1 2.8 22 34-55 1-22 (107)
270 COG3896 Chloramphenicol 3-O-ph 97.3 0.0061 1.3E-07 46.3 10.5 128 28-158 20-160 (205)
271 PF13191 AAA_16: AAA ATPase do 97.3 0.00042 9.1E-09 54.1 4.6 29 27-55 20-48 (185)
272 PF05729 NACHT: NACHT domain 97.2 0.00028 6.2E-09 53.9 3.4 23 33-55 2-24 (166)
273 TIGR00750 lao LAO/AO transport 97.2 0.00046 1E-08 58.7 4.9 39 17-55 20-58 (300)
274 TIGR01241 FtsH_fam ATP-depende 97.2 0.00034 7.3E-09 63.7 4.0 35 28-62 85-119 (495)
275 TIGR00382 clpX endopeptidase C 97.2 0.00037 7.9E-09 61.6 4.1 31 32-62 117-147 (413)
276 KOG0734 AAA+-type ATPase conta 97.2 0.0036 7.7E-08 56.3 10.1 34 29-62 335-368 (752)
277 TIGR01223 Pmev_kin_anim phosph 97.2 0.0072 1.6E-07 46.9 10.6 115 33-156 1-133 (182)
278 PRK14962 DNA polymerase III su 97.2 0.0005 1.1E-08 62.0 4.9 37 21-57 26-62 (472)
279 TIGR01618 phage_P_loop phage n 97.2 0.00037 8.1E-09 56.4 3.7 34 30-65 11-44 (220)
280 PF07724 AAA_2: AAA domain (Cd 97.2 0.00044 9.6E-09 53.9 3.9 27 31-57 3-29 (171)
281 COG1419 FlhF Flagellar GTP-bin 97.2 0.0021 4.5E-08 56.1 8.2 37 29-65 201-244 (407)
282 PTZ00361 26 proteosome regulat 97.2 0.00046 9.9E-09 61.5 4.3 33 29-61 215-247 (438)
283 TIGR01166 cbiO cobalt transpor 97.2 0.00025 5.5E-09 56.0 2.4 36 20-55 7-42 (190)
284 PRK12402 replication factor C 97.1 0.012 2.7E-07 50.5 12.9 23 33-55 38-60 (337)
285 PHA02244 ATPase-like protein 97.1 0.00064 1.4E-08 58.9 4.8 34 32-65 120-153 (383)
286 COG4598 HisP ABC-type histidin 97.1 0.00041 8.9E-09 53.9 3.1 33 19-51 20-52 (256)
287 PRK06620 hypothetical protein; 97.1 0.00045 9.9E-09 55.8 3.5 30 32-61 45-74 (214)
288 PF07726 AAA_3: ATPase family 97.1 0.00028 6E-09 51.9 2.0 28 34-61 2-29 (131)
289 PHA02624 large T antigen; Prov 97.1 0.0011 2.3E-08 60.9 6.1 48 15-62 415-462 (647)
290 PRK08903 DnaA regulatory inact 97.1 0.0016 3.5E-08 52.9 6.7 36 30-65 41-81 (227)
291 PF13555 AAA_29: P-loop contai 97.1 0.00073 1.6E-08 43.1 3.6 22 32-53 24-45 (62)
292 TIGR03015 pepcterm_ATPase puta 97.1 0.00053 1.1E-08 57.1 3.9 27 30-56 42-68 (269)
293 TIGR00101 ureG urease accessor 97.1 0.00055 1.2E-08 54.7 3.7 25 31-55 1-25 (199)
294 cd03238 ABC_UvrA The excision 97.1 0.00028 6.1E-09 55.2 2.0 32 21-52 11-42 (176)
295 cd03263 ABC_subfamily_A The AB 97.1 0.0003 6.4E-09 56.9 2.2 36 20-55 17-52 (220)
296 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00072 1.6E-08 54.8 4.4 39 28-66 35-78 (226)
297 PRK14088 dnaA chromosomal repl 97.1 0.013 2.7E-07 52.7 12.6 38 33-70 132-176 (440)
298 cd03259 ABC_Carb_Solutes_like 97.1 0.00034 7.3E-09 56.3 2.4 36 20-55 15-50 (213)
299 PF08477 Miro: Miro-like prote 97.1 0.00058 1.3E-08 49.3 3.4 22 33-54 1-22 (119)
300 TIGR00064 ftsY signal recognit 97.1 0.00089 1.9E-08 56.1 5.0 35 29-63 70-109 (272)
301 TIGR02673 FtsE cell division A 97.1 0.00034 7.4E-09 56.3 2.4 36 20-55 17-52 (214)
302 KOG4622 Predicted nucleotide k 97.1 0.018 4E-07 45.3 11.7 120 33-159 3-143 (291)
303 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00033 7E-09 56.3 2.2 36 20-55 16-51 (211)
304 COG0396 sufC Cysteine desulfur 97.1 0.0005 1.1E-08 55.4 3.1 40 18-57 17-56 (251)
305 PF10662 PduV-EutP: Ethanolami 97.0 0.00052 1.1E-08 51.6 3.0 23 32-54 2-24 (143)
306 cd01130 VirB11-like_ATPase Typ 97.0 0.00064 1.4E-08 53.6 3.7 28 28-55 22-49 (186)
307 TIGR00960 3a0501s02 Type II (G 97.0 0.00026 5.7E-09 57.1 1.5 36 20-55 18-53 (216)
308 cd03219 ABC_Mj1267_LivG_branch 97.0 0.00032 6.9E-09 57.4 2.0 36 20-55 15-50 (236)
309 cd03301 ABC_MalK_N The N-termi 97.0 0.00034 7.4E-09 56.3 2.1 36 20-55 15-50 (213)
310 PRK13695 putative NTPase; Prov 97.0 0.00063 1.4E-08 53.0 3.6 24 32-55 1-24 (174)
311 COG3911 Predicted ATPase [Gene 97.0 0.00058 1.2E-08 51.3 3.1 28 32-60 10-37 (183)
312 COG1219 ClpX ATP-dependent pro 97.0 0.00065 1.4E-08 57.3 3.7 33 31-63 97-129 (408)
313 cd03257 ABC_NikE_OppD_transpor 97.0 0.00038 8.2E-09 56.6 2.3 36 20-55 20-55 (228)
314 cd03264 ABC_drug_resistance_li 97.0 0.00032 6.9E-09 56.4 1.8 35 20-55 15-49 (211)
315 PRK08181 transposase; Validate 97.0 0.0073 1.6E-07 50.5 10.0 40 30-69 105-149 (269)
316 TIGR02315 ABC_phnC phosphonate 97.0 0.0004 8.6E-09 57.1 2.4 36 20-55 17-52 (243)
317 cd03115 SRP The signal recogni 97.0 0.00066 1.4E-08 52.8 3.5 31 33-63 2-37 (173)
318 cd03262 ABC_HisP_GlnQ_permease 97.0 0.00038 8.3E-09 56.0 2.2 36 20-55 15-50 (213)
319 cd03292 ABC_FtsE_transporter F 97.0 0.00032 7E-09 56.4 1.8 36 20-55 16-51 (214)
320 PRK10416 signal recognition pa 97.0 0.00074 1.6E-08 57.9 4.1 26 30-55 113-138 (318)
321 TIGR00763 lon ATP-dependent pr 97.0 0.0012 2.6E-08 63.3 5.9 33 29-61 345-377 (775)
322 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00031 6.7E-09 56.8 1.6 36 20-55 19-54 (218)
323 cd01131 PilT Pilus retraction 97.0 0.00066 1.4E-08 54.2 3.5 24 33-56 3-26 (198)
324 COG1855 ATPase (PilT family) [ 97.0 0.00054 1.2E-08 60.2 3.1 41 12-55 247-287 (604)
325 CHL00176 ftsH cell division pr 97.0 0.00077 1.7E-08 62.9 4.4 34 29-62 214-247 (638)
326 TIGR03689 pup_AAA proteasome A 97.0 0.00059 1.3E-08 61.9 3.5 30 29-58 214-243 (512)
327 COG1223 Predicted ATPase (AAA+ 97.0 0.00061 1.3E-08 55.9 3.2 40 31-70 151-192 (368)
328 cd03218 ABC_YhbG The ABC trans 97.0 0.00042 9E-09 56.6 2.3 36 20-55 15-50 (232)
329 PRK08084 DNA replication initi 97.0 0.00089 1.9E-08 54.9 4.2 34 31-64 45-83 (235)
330 cd03224 ABC_TM1139_LivF_branch 97.0 0.00032 7E-09 56.8 1.6 36 20-55 15-50 (222)
331 cd03235 ABC_Metallic_Cations A 97.0 0.00037 8E-09 56.1 1.9 36 20-55 14-49 (213)
332 cd04155 Arl3 Arl3 subfamily. 97.0 0.00087 1.9E-08 51.7 3.9 25 29-53 12-36 (173)
333 PRK06893 DNA replication initi 97.0 0.001 2.2E-08 54.3 4.5 34 30-63 38-76 (229)
334 PF01712 dNK: Deoxynucleoside 97.0 0.00086 1.9E-08 50.8 3.8 25 136-160 65-90 (146)
335 PRK09183 transposase/IS protei 97.0 0.0017 3.8E-08 54.0 5.9 39 28-66 99-142 (259)
336 PRK15177 Vi polysaccharide exp 97.0 0.00039 8.5E-09 56.1 2.0 34 22-55 4-37 (213)
337 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00037 8E-09 55.8 1.8 36 20-55 15-50 (205)
338 cd03265 ABC_DrrA DrrA is the A 97.0 0.00043 9.4E-09 56.0 2.2 36 20-55 15-50 (220)
339 cd03258 ABC_MetN_methionine_tr 97.0 0.00042 9E-09 56.6 2.1 36 20-55 20-55 (233)
340 cd03261 ABC_Org_Solvent_Resist 97.0 0.00034 7.4E-09 57.2 1.6 36 20-55 15-50 (235)
341 TIGR02770 nickel_nikD nickel i 97.0 0.00042 9.1E-09 56.5 2.1 33 23-55 4-36 (230)
342 COG2255 RuvB Holliday junction 97.0 0.0017 3.7E-08 54.0 5.6 33 28-60 49-81 (332)
343 PRK13342 recombination factor 97.0 0.00088 1.9E-08 59.6 4.3 33 30-62 35-67 (413)
344 PRK14974 cell division protein 97.0 0.00084 1.8E-08 57.9 4.0 26 30-55 139-164 (336)
345 PRK14242 phosphate transporter 97.0 0.00043 9.2E-09 57.3 2.1 35 20-54 21-55 (253)
346 cd03228 ABCC_MRP_Like The MRP 97.0 0.00055 1.2E-08 53.2 2.6 36 20-55 17-52 (171)
347 TIGR03410 urea_trans_UrtE urea 97.0 0.00044 9.5E-09 56.4 2.1 36 20-55 15-50 (230)
348 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0004 8.7E-09 54.1 1.8 36 20-55 15-50 (173)
349 TIGR02211 LolD_lipo_ex lipopro 97.0 0.00037 8E-09 56.4 1.6 36 20-55 20-55 (221)
350 cd03215 ABC_Carb_Monos_II This 97.0 0.00045 9.8E-09 54.3 2.1 36 20-55 15-50 (182)
351 cd03256 ABC_PhnC_transporter A 96.9 0.0004 8.6E-09 57.0 1.8 36 20-55 16-51 (241)
352 TIGR03608 L_ocin_972_ABC putat 96.9 0.00039 8.4E-09 55.6 1.7 36 20-55 13-48 (206)
353 cd03254 ABCC_Glucan_exporter_l 96.9 0.00057 1.2E-08 55.6 2.7 36 20-55 18-53 (229)
354 PRK10247 putative ABC transpor 96.9 0.00044 9.6E-09 56.2 2.1 36 20-55 22-57 (225)
355 cd03234 ABCG_White The White s 96.9 0.00056 1.2E-08 55.6 2.7 37 19-55 21-57 (226)
356 PRK14961 DNA polymerase III su 96.9 0.0014 3.1E-08 57.3 5.3 31 27-57 34-64 (363)
357 PRK05703 flhF flagellar biosyn 96.9 0.0058 1.3E-07 54.5 9.2 34 31-64 221-261 (424)
358 cd03260 ABC_PstB_phosphate_tra 96.9 0.00041 8.9E-09 56.4 1.8 36 20-55 15-50 (227)
359 cd03269 ABC_putative_ATPase Th 96.9 0.00036 7.9E-09 56.0 1.5 35 21-55 16-50 (210)
360 COG1220 HslU ATP-dependent pro 96.9 0.00089 1.9E-08 56.9 3.8 33 30-62 49-81 (444)
361 PRK11629 lolD lipoprotein tran 96.9 0.00037 8.1E-09 56.9 1.6 36 20-55 24-59 (233)
362 PF03205 MobB: Molybdopterin g 96.9 0.00083 1.8E-08 50.5 3.3 24 32-55 1-24 (140)
363 COG4525 TauB ABC-type taurine 96.9 0.00092 2E-08 52.7 3.5 35 18-52 18-52 (259)
364 PF00005 ABC_tran: ABC transpo 96.9 0.00057 1.2E-08 50.8 2.4 30 26-55 6-35 (137)
365 PRK10744 pstB phosphate transp 96.9 0.00045 9.8E-09 57.5 2.0 36 20-55 28-63 (260)
366 PRK12323 DNA polymerase III su 96.9 0.015 3.3E-07 54.1 11.9 31 27-57 34-64 (700)
367 cd03223 ABCD_peroxisomal_ALDP 96.9 0.00048 1.1E-08 53.3 2.0 36 20-55 16-51 (166)
368 cd03296 ABC_CysA_sulfate_impor 96.9 0.00044 9.5E-09 56.8 1.8 36 20-55 17-52 (239)
369 cd01918 HprK_C HprK/P, the bif 96.9 0.00092 2E-08 50.7 3.4 33 31-64 14-46 (149)
370 PRK11264 putative amino-acid A 96.9 0.00053 1.1E-08 56.6 2.3 36 20-55 18-53 (250)
371 TIGR01978 sufC FeS assembly AT 96.9 0.00046 9.9E-09 56.7 1.9 35 20-54 15-49 (243)
372 PHA02544 44 clamp loader, smal 96.9 0.0013 2.9E-08 56.2 4.8 33 27-59 39-71 (316)
373 cd03244 ABCC_MRP_domain2 Domai 96.9 0.00065 1.4E-08 55.0 2.7 36 20-55 19-54 (221)
374 cd03247 ABCC_cytochrome_bd The 96.9 0.00047 1E-08 54.0 1.8 36 20-55 17-52 (178)
375 cd00879 Sar1 Sar1 subfamily. 96.9 0.0018 3.8E-08 50.9 5.1 36 17-53 6-41 (190)
376 PRK10787 DNA-binding ATP-depen 96.9 0.0016 3.5E-08 62.3 5.7 33 29-61 347-379 (784)
377 cd03250 ABCC_MRP_domain1 Domai 96.9 0.00053 1.1E-08 54.9 2.1 36 20-55 20-55 (204)
378 TIGR02323 CP_lyasePhnK phospho 96.9 0.00048 1E-08 57.0 1.9 35 21-55 19-53 (253)
379 PRK14956 DNA polymerase III su 96.9 0.0018 3.9E-08 58.2 5.6 32 27-58 36-67 (484)
380 PRK15455 PrkA family serine pr 96.9 0.0014 3.1E-08 59.8 5.0 27 29-55 101-127 (644)
381 TIGR00362 DnaA chromosomal rep 96.9 0.019 4.1E-07 51.0 12.1 37 32-68 137-180 (405)
382 PRK14247 phosphate ABC transpo 96.9 0.00052 1.1E-08 56.7 2.1 36 20-55 18-53 (250)
383 TIGR03864 PQQ_ABC_ATP ABC tran 96.9 0.00045 9.8E-09 56.6 1.7 36 20-55 16-51 (236)
384 COG4167 SapF ABC-type antimicr 96.9 0.00064 1.4E-08 53.0 2.4 37 18-54 26-62 (267)
385 cd03245 ABCC_bacteriocin_expor 96.9 0.00061 1.3E-08 55.1 2.5 36 20-55 19-54 (220)
386 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.00039 8.4E-09 56.3 1.3 36 20-55 19-54 (220)
387 cd00544 CobU Adenosylcobinamid 96.9 0.001 2.2E-08 51.7 3.6 25 33-57 1-25 (169)
388 PF13086 AAA_11: AAA domain; P 96.9 0.0011 2.4E-08 53.4 4.0 26 30-55 16-41 (236)
389 PF01695 IstB_IS21: IstB-like 96.9 0.002 4.3E-08 50.6 5.2 40 30-69 46-90 (178)
390 cd03229 ABC_Class3 This class 96.9 0.00044 9.5E-09 54.1 1.5 36 20-55 15-50 (178)
391 cd03246 ABCC_Protease_Secretio 96.9 0.00055 1.2E-08 53.3 2.1 36 20-55 17-52 (173)
392 PRK11248 tauB taurine transpor 96.9 0.00046 9.9E-09 57.3 1.7 36 20-55 16-51 (255)
393 PRK14250 phosphate ABC transpo 96.9 0.00049 1.1E-08 56.6 1.8 36 20-55 18-53 (241)
394 KOG0735 AAA+-type ATPase [Post 96.9 0.0075 1.6E-07 56.0 9.5 44 30-73 700-745 (952)
395 TIGR03238 dnd_assoc_3 dnd syst 96.9 0.00096 2.1E-08 59.6 3.7 36 14-49 15-50 (504)
396 cd03268 ABC_BcrA_bacitracin_re 96.9 0.00048 1E-08 55.2 1.7 36 20-55 15-50 (208)
397 cd03251 ABCC_MsbA MsbA is an e 96.9 0.00058 1.3E-08 55.8 2.3 36 20-55 17-52 (234)
398 KOG1532 GTPase XAB1, interacts 96.9 0.0015 3.3E-08 53.9 4.6 45 25-69 13-62 (366)
399 TIGR01243 CDC48 AAA family ATP 96.9 0.001 2.2E-08 63.5 4.2 34 29-62 485-518 (733)
400 PRK08939 primosomal protein Dn 96.9 0.032 7E-07 47.6 12.9 105 30-156 155-270 (306)
401 COG0464 SpoVK ATPases of the A 96.9 0.00098 2.1E-08 60.7 3.9 34 29-62 274-307 (494)
402 cd03266 ABC_NatA_sodium_export 96.9 0.0006 1.3E-08 55.0 2.3 36 20-55 20-55 (218)
403 PRK00149 dnaA chromosomal repl 96.9 0.015 3.2E-07 52.5 11.4 36 33-68 150-192 (450)
404 cd03369 ABCC_NFT1 Domain 2 of 96.9 0.00071 1.5E-08 54.2 2.7 36 20-55 23-58 (207)
405 PRK13648 cbiO cobalt transport 96.9 0.00058 1.3E-08 57.1 2.2 36 20-55 24-59 (269)
406 TIGR03005 ectoine_ehuA ectoine 96.9 0.00048 1E-08 57.0 1.7 36 20-55 15-50 (252)
407 PRK10895 lipopolysaccharide AB 96.9 0.00046 9.9E-09 56.7 1.5 36 20-55 18-53 (241)
408 cd03248 ABCC_TAP TAP, the Tran 96.9 0.00073 1.6E-08 54.9 2.7 36 20-55 29-64 (226)
409 PRK14241 phosphate transporter 96.9 0.00052 1.1E-08 57.0 1.8 35 20-54 19-53 (258)
410 cd03233 ABC_PDR_domain1 The pl 96.9 0.00045 9.8E-09 55.3 1.4 36 20-55 22-57 (202)
411 PRK07003 DNA polymerase III su 96.9 0.023 5E-07 53.8 12.6 32 27-58 34-65 (830)
412 TIGR00972 3a0107s01c2 phosphat 96.9 0.00064 1.4E-08 56.1 2.3 36 20-55 16-51 (247)
413 PRK14267 phosphate ABC transpo 96.9 0.00058 1.3E-08 56.5 2.0 36 20-55 19-54 (253)
414 cd03216 ABC_Carb_Monos_I This 96.9 0.00048 1E-08 53.2 1.4 36 20-55 15-50 (163)
415 PRK13540 cytochrome c biogenes 96.8 0.00051 1.1E-08 54.8 1.6 36 20-55 16-51 (200)
416 PRK10908 cell division protein 96.8 0.00054 1.2E-08 55.5 1.8 36 20-55 17-52 (222)
417 cd04163 Era Era subfamily. Er 96.8 0.001 2.2E-08 50.4 3.2 23 31-53 3-25 (168)
418 COG4559 ABC-type hemin transpo 96.8 0.00067 1.5E-08 54.1 2.2 37 20-56 16-52 (259)
419 PRK14256 phosphate ABC transpo 96.8 0.00054 1.2E-08 56.7 1.8 36 20-55 19-54 (252)
420 KOG0651 26S proteasome regulat 96.8 0.0027 6E-08 53.4 5.8 41 28-68 163-205 (388)
421 KOG0743 AAA+-type ATPase [Post 96.8 0.00088 1.9E-08 58.9 3.1 30 33-62 237-266 (457)
422 PF01926 MMR_HSR1: 50S ribosom 96.8 0.001 2.2E-08 48.0 3.0 21 33-53 1-21 (116)
423 PRK06645 DNA polymerase III su 96.8 0.0021 4.6E-08 58.4 5.6 32 27-58 39-70 (507)
424 PRK14248 phosphate ABC transpo 96.8 0.0006 1.3E-08 57.0 2.0 35 20-54 36-70 (268)
425 cd03232 ABC_PDR_domain2 The pl 96.8 0.0005 1.1E-08 54.5 1.4 34 20-53 22-55 (192)
426 COG1125 OpuBA ABC-type proline 96.8 0.00062 1.4E-08 55.7 1.9 31 22-52 18-48 (309)
427 cd01120 RecA-like_NTPases RecA 96.8 0.00099 2.2E-08 50.5 3.0 23 33-55 1-23 (165)
428 PRK10584 putative ABC transpor 96.8 0.00055 1.2E-08 55.7 1.7 36 20-55 25-60 (228)
429 PRK13539 cytochrome c biogenes 96.8 0.00058 1.3E-08 54.8 1.8 36 20-55 17-52 (207)
430 PRK11701 phnK phosphonate C-P 96.8 0.00054 1.2E-08 56.9 1.6 36 20-55 21-56 (258)
431 PRK09493 glnQ glutamine ABC tr 96.8 0.00061 1.3E-08 55.9 1.9 36 20-55 16-51 (240)
432 PRK11247 ssuB aliphatic sulfon 96.8 0.00059 1.3E-08 56.7 1.8 36 20-55 27-62 (257)
433 cd03295 ABC_OpuCA_Osmoprotecti 96.8 0.00058 1.3E-08 56.2 1.7 36 20-55 16-51 (242)
434 PRK11124 artP arginine transpo 96.8 0.00059 1.3E-08 56.1 1.8 36 20-55 17-52 (242)
435 PRK07764 DNA polymerase III su 96.8 0.015 3.3E-07 55.9 11.4 38 21-58 27-64 (824)
436 PRK14262 phosphate ABC transpo 96.8 0.00062 1.3E-08 56.2 1.9 34 20-53 18-51 (250)
437 cd03290 ABCC_SUR1_N The SUR do 96.8 0.00074 1.6E-08 54.6 2.3 36 20-55 16-51 (218)
438 PF06745 KaiC: KaiC; InterPro 96.8 0.0024 5.2E-08 51.9 5.3 27 27-53 15-41 (226)
439 CHL00131 ycf16 sulfate ABC tra 96.8 0.00063 1.4E-08 56.2 1.9 35 20-54 22-56 (252)
440 PRK14240 phosphate transporter 96.8 0.00067 1.5E-08 56.0 2.1 35 20-54 18-52 (250)
441 TIGR00073 hypB hydrogenase acc 96.8 0.0022 4.7E-08 51.5 5.0 30 27-56 18-47 (207)
442 PRK13638 cbiO cobalt transport 96.8 0.0007 1.5E-08 56.7 2.2 36 20-55 16-51 (271)
443 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0012 2.6E-08 51.7 3.3 29 27-55 21-49 (177)
444 PRK14274 phosphate ABC transpo 96.8 0.00055 1.2E-08 56.9 1.5 36 20-55 27-62 (259)
445 PRK14255 phosphate ABC transpo 96.8 0.00063 1.4E-08 56.3 1.9 35 20-54 20-54 (252)
446 PRK13538 cytochrome c biogenes 96.8 0.00063 1.4E-08 54.4 1.8 36 20-55 16-51 (204)
447 TIGR01243 CDC48 AAA family ATP 96.8 0.0012 2.6E-08 63.0 4.0 33 29-61 210-242 (733)
448 cd03267 ABC_NatA_like Similar 96.8 0.00066 1.4E-08 55.7 1.9 36 20-55 36-71 (236)
449 cd03213 ABCG_EPDR ABCG transpo 96.8 0.00079 1.7E-08 53.5 2.3 36 20-55 24-59 (194)
450 cd03214 ABC_Iron-Siderophores_ 96.8 0.00063 1.4E-08 53.3 1.7 36 20-55 14-49 (180)
451 PRK14490 putative bifunctional 96.8 0.0013 2.8E-08 57.7 3.8 28 29-56 3-30 (369)
452 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.00073 1.6E-08 55.6 2.1 34 20-53 19-52 (254)
453 PRK14251 phosphate ABC transpo 96.8 0.0007 1.5E-08 56.0 2.1 36 20-55 19-54 (251)
454 PRK14273 phosphate ABC transpo 96.8 0.0008 1.7E-08 55.7 2.4 36 20-55 22-57 (254)
455 cd03252 ABCC_Hemolysin The ABC 96.8 0.00072 1.6E-08 55.3 2.1 36 20-55 17-52 (237)
456 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.8 0.00074 1.6E-08 55.3 2.2 36 20-55 18-53 (238)
457 COG3638 ABC-type phosphate/pho 96.8 0.00068 1.5E-08 54.8 1.8 30 24-53 23-52 (258)
458 TIGR02324 CP_lyasePhnL phospho 96.8 0.00067 1.5E-08 55.0 1.9 36 20-55 23-58 (224)
459 PF13479 AAA_24: AAA domain 96.8 0.0011 2.3E-08 53.6 3.0 32 29-63 1-32 (213)
460 TIGR02769 nickel_nikE nickel i 96.8 0.00068 1.5E-08 56.6 1.9 36 20-55 26-61 (265)
461 TIGR00602 rad24 checkpoint pro 96.8 0.0018 3.8E-08 60.4 4.7 33 27-59 106-138 (637)
462 PRK14086 dnaA chromosomal repl 96.8 0.046 1E-06 50.7 13.8 37 33-69 316-359 (617)
463 TIGR01189 ccmA heme ABC export 96.8 0.00064 1.4E-08 54.1 1.6 35 21-55 16-50 (198)
464 cd03217 ABC_FeS_Assembly ABC-t 96.8 0.00075 1.6E-08 53.9 2.0 35 20-54 15-49 (200)
465 PRK13541 cytochrome c biogenes 96.8 0.0014 3E-08 52.1 3.5 32 24-55 19-50 (195)
466 PRK14253 phosphate ABC transpo 96.8 0.0008 1.7E-08 55.5 2.2 36 20-55 18-53 (249)
467 TIGR03499 FlhF flagellar biosy 96.8 0.0015 3.2E-08 55.2 3.8 26 30-55 193-218 (282)
468 PRK14237 phosphate transporter 96.8 0.00066 1.4E-08 56.7 1.8 36 20-55 35-70 (267)
469 PRK14249 phosphate ABC transpo 96.8 0.00075 1.6E-08 55.8 2.0 36 20-55 19-54 (251)
470 PRK14261 phosphate ABC transpo 96.8 0.0007 1.5E-08 56.0 1.9 34 20-53 21-54 (253)
471 PRK14269 phosphate ABC transpo 96.8 0.00072 1.6E-08 55.8 1.9 35 20-54 17-51 (246)
472 PLN03025 replication factor C 96.8 0.0018 3.8E-08 55.6 4.4 23 33-55 36-58 (319)
473 PRK13649 cbiO cobalt transport 96.8 0.00071 1.5E-08 56.9 1.9 36 20-55 22-57 (280)
474 PRK13543 cytochrome c biogenes 96.8 0.00076 1.7E-08 54.4 2.0 36 20-55 26-61 (214)
475 PRK14259 phosphate ABC transpo 96.8 0.0007 1.5E-08 56.6 1.9 35 20-54 28-62 (269)
476 TIGR01184 ntrCD nitrate transp 96.8 0.00084 1.8E-08 54.8 2.2 31 25-55 5-35 (230)
477 PRK10418 nikD nickel transport 96.8 0.0008 1.7E-08 55.8 2.1 36 20-55 18-53 (254)
478 PRK06835 DNA replication prote 96.8 0.018 3.9E-07 49.6 10.4 37 32-68 184-225 (329)
479 COG0542 clpA ATP-binding subun 96.7 0.0041 8.9E-08 58.8 6.9 45 27-71 516-566 (786)
480 cd03294 ABC_Pro_Gly_Bertaine T 96.7 0.00072 1.6E-08 56.6 1.8 34 22-55 41-74 (269)
481 PRK14235 phosphate transporter 96.7 0.00056 1.2E-08 57.2 1.2 36 20-55 34-69 (267)
482 PRK11300 livG leucine/isoleuci 96.7 0.00063 1.4E-08 56.3 1.4 36 20-55 20-55 (255)
483 KOG0731 AAA+-type ATPase conta 96.7 0.0015 3.2E-08 61.3 3.9 36 27-62 340-375 (774)
484 PRK14963 DNA polymerase III su 96.7 0.0023 5E-08 58.3 5.2 31 27-57 32-62 (504)
485 cd03253 ABCC_ATM1_transporter 96.7 0.0008 1.7E-08 55.0 2.0 36 20-55 16-51 (236)
486 PRK13548 hmuV hemin importer A 96.7 0.00072 1.6E-08 56.2 1.7 36 20-55 17-52 (258)
487 TIGR01288 nodI ATP-binding ABC 96.7 0.00077 1.7E-08 57.4 1.9 36 20-55 19-54 (303)
488 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.7 0.00064 1.4E-08 55.3 1.4 32 24-55 41-72 (224)
489 TIGR03167 tRNA_sel_U_synt tRNA 96.7 0.0071 1.5E-07 51.6 7.8 117 29-159 125-244 (311)
490 PRK10575 iron-hydroxamate tran 96.7 0.00061 1.3E-08 56.9 1.3 36 20-55 26-61 (265)
491 TIGR00176 mobB molybdopterin-g 96.7 0.0014 3E-08 50.2 3.2 23 33-55 1-23 (155)
492 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.0015 3.4E-08 66.5 4.2 39 29-67 1628-1668(2281)
493 cd03298 ABC_ThiQ_thiamine_tran 96.7 0.0012 2.6E-08 53.0 2.9 33 23-55 16-48 (211)
494 PRK14244 phosphate ABC transpo 96.7 0.00079 1.7E-08 55.7 1.9 35 20-54 20-54 (251)
495 PF04665 Pox_A32: Poxvirus A32 96.7 0.0017 3.7E-08 53.2 3.7 27 29-55 11-37 (241)
496 TIGR02868 CydC thiol reductant 96.7 0.00077 1.7E-08 61.9 2.0 36 20-55 350-385 (529)
497 PRK14272 phosphate ABC transpo 96.7 0.00093 2E-08 55.2 2.3 36 20-55 19-54 (252)
498 PRK13632 cbiO cobalt transport 96.7 0.00084 1.8E-08 56.2 2.0 36 20-55 24-59 (271)
499 KOG0727 26S proteasome regulat 96.7 0.0074 1.6E-07 49.5 7.3 49 24-74 184-234 (408)
500 PRK13645 cbiO cobalt transport 96.7 0.00072 1.6E-08 57.2 1.6 36 20-55 26-61 (289)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=1.6e-48 Score=317.11 Aligned_cols=241 Identities=90% Similarity=1.366 Sum_probs=229.8
Q ss_pred cccccCCCChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHH
Q 025970 4 SAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEA 83 (245)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~ 83 (245)
++-.++++|..+++.++.+++.+..++++.|+|+|+|||||||+|+.|+++||+++|++++++|+++..+++.|..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~ 83 (244)
T PLN02674 4 AAANLEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEA 83 (244)
T ss_pred cccccccCchHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHH
Confidence 34578899999999999999988777788999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 84 MDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 84 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
+..|..+|++++..++.+++....+.+|||+||||++..|+..|+.++...+..++.+|+|++|++++++|+..|++|+.
T Consensus 84 ~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~ 163 (244)
T PLN02674 84 MDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPS 163 (244)
T ss_pred HHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccc
Confidence 99999999999999999999888777899999999999999999988877788899999999999999999999999999
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
||+.||..|.||..++.|+.|+++|.+|.+|+.+.+++|++.|++.+.++.+||.+.+.++.||+++++++++..|..+|
T Consensus 164 ~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 164 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 244 ~ 244 (244)
T PLN02674 244 S 244 (244)
T ss_pred C
Confidence 3
No 2
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=5.9e-41 Score=269.27 Aligned_cols=208 Identities=37% Similarity=0.668 Sum_probs=195.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|+|+|||||||+++.|++.+++.++++++++++.+..+++.|..+..++..|..+|+.++..++.+++......++
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 46899999999999999999999999999999999999998999999999999999999999999999999988767789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
|||||||++..|+..|...+ ....+|+|++|++++++|+.+|+.|+.||+.||..|+||..++.|+.|++++.+|
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~-----~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R 155 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFL-----PNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQR 155 (211)
T ss_pred EEEECCCCCHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeecc
Confidence 99999999999999887642 1246888999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+|+.+.+++|+..|++...++.+||...+.++.|||+++++++++.|.+.|.
T Consensus 156 ~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~ 208 (211)
T PRK14526 156 KDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS 208 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999998899999999999999999999875
No 3
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1e-40 Score=270.26 Aligned_cols=214 Identities=52% Similarity=0.905 Sum_probs=203.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+..++..|..+|++++..++..++....+.+|
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 47999999999999999999999999999999999999998899999999999999999999999999999887766679
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
|||||||++..|+..|.+.+...+..++.+|+|+||++++++|+.+|..|+.||..||..++||+..+.++.|++++..|
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 99999999999999998887777778899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
.+++.+.+++|+..|++++.++.+||...+.++.|||+++++++++.|.+.|.+
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888899999999999999999998863
No 4
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=1.5e-40 Score=271.46 Aligned_cols=222 Identities=33% Similarity=0.577 Sum_probs=197.7
Q ss_pred HHHHHHHHhccCC--CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH
Q 025970 16 MMTELLRRFKCSS--KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93 (245)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~ 93 (245)
+-+.++..-..++ .+++.|+|+|+|||||||+|+.|++.||+.++++++++|+++..++++|..+..++..|..+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPde 91 (261)
T PLN02459 12 LADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDE 91 (261)
T ss_pred chhhccccccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHH
Confidence 3344444443333 35688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccccc
Q 025970 94 LVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTK 171 (245)
Q Consensus 94 ~~~~~l~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~ 171 (245)
++..++..++... ....||||||||++..|+..|... ..++.+|+|++|++++++|+.+|++|+.||+.||..
T Consensus 92 iv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~ 166 (261)
T PLN02459 92 IIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVA 166 (261)
T ss_pred HHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEEEEECCHHHHHHHhhccccccccCcccccc
Confidence 9999999999875 245899999999999999988754 357999999999999999999999999999999986
Q ss_pred C-------------CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHH
Q 025970 172 F-------------APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE 238 (245)
Q Consensus 172 ~-------------~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~ 238 (245)
+ +||..+ ++.|+++|.+|.+|.++.+++|++.|++.+.++.+||.+.+.++.||+++++++++..
T Consensus 167 ~~~~~~~~~~~~~~~~p~~~--~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~ 244 (261)
T PLN02459 167 DIDLKGEDGRPGIVMPPLLP--PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPR 244 (261)
T ss_pred ccccccccccccccCCCCCC--CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHH
Confidence 4 566443 3578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 025970 239 VQKVLS 244 (245)
Q Consensus 239 i~~~l~ 244 (245)
|..+|.
T Consensus 245 i~~~l~ 250 (261)
T PLN02459 245 LLQALN 250 (261)
T ss_pred HHHHhc
Confidence 998874
No 5
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=2.1e-40 Score=266.70 Aligned_cols=212 Identities=33% Similarity=0.559 Sum_probs=192.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|.|+|||||||+|+.|++.|++.++++++++++.+..+++++..++.++..|..+|++++..++..++.... .+|
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence 4689999999999999999999999999999999999998899999999999999999999999999999998876 789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC-CCCCC-CCCCCCCCccc
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA-PPKVH-GFDDVTGEPLI 189 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~-~p~~~-~~~~~~~~~l~ 189 (245)
||+||||++..|+..|...+...+..|+.+|+|++|++++++|+..|+.|+.||..|+..+. ||..+ +.|+.|+++|.
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~ 159 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELS 159 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccc
Confidence 99999999999999999888777788999999999999999999999999998876655554 45444 48999999999
Q ss_pred cCCCCc-HHHHHHHHHHHHHh---hHHHHHHHHh-----cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 190 QRKDDT-AQVLKSRLEAFHKQ---TEPVIDYYAK-----KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 190 ~~~~~~-~~~~~~rl~~~~~~---~~~l~~~~~~-----~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+|.||+ ++.+++|+..|++. ..++.+||.+ .+.++.|||+++++++++.|..+|.
T Consensus 160 ~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~ 223 (223)
T PRK14529 160 TRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS 223 (223)
T ss_pred cCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 999996 78999999999997 4578899985 6789999999999999999998763
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.2e-39 Score=263.13 Aligned_cols=208 Identities=54% Similarity=0.899 Sum_probs=194.2
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCCce
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CEKGF 112 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 112 (245)
|+|+|+|||||||+|+.|+++||+.+|++++++++.+...++.+..+..++..|..+|++++..++..++.... ...+|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 78999999999999999999999999999999999998889999999999999999999999999999998754 35799
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK 192 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~ 192 (245)
||||||++..|+..|...+. ..|+.+|+|++|++++++|+.+|+.|+.||+.||..|.||...+.|+.|++++..|.
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~---~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~ 158 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLK---EKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRE 158 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhc---cCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCC
Confidence 99999999999998876542 158999999999999999999999999999999999999988888888999999999
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+|+.+.+++|+..|++.+.++.+||.+.+.++.|||+++++++++.|.+.|.
T Consensus 159 dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 210 (210)
T TIGR01351 159 DDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210 (210)
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence 9999999999999999999999999998899999999999999999998763
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=3.1e-38 Score=256.18 Aligned_cols=211 Identities=30% Similarity=0.558 Sum_probs=190.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK-- 105 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~-- 105 (245)
...|+.|+|+|+|||||||+|+.|+++||++++++++++++++..++++|..+..++..|..+|++++..++..++..
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence 346788999999999999999999999999999999999999988899999999999999999999999999999887
Q ss_pred CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC-------CCCC-C
Q 025970 106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF-------APPK-V 177 (245)
Q Consensus 106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~-------~~p~-~ 177 (245)
.....|||+||||++..|+..|... ..|+++|+|++|.+++++|+..|++|+.||+.||..+ .||. .
T Consensus 83 ~~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~ 157 (229)
T PTZ00088 83 DDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILP 157 (229)
T ss_pred cccCceEEEecCCCCHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCC
Confidence 3455799999999999999887643 4689999999999999999999999999999999974 2433 3
Q ss_pred CCCCCCCCC--ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCc-EEEE---eCCCChhHHHHHHHHhh
Q 025970 178 HGFDDVTGE--PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGV-LAQL---HAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 178 ~~~~~~~~~--~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~-~~~i---d~~~~~e~v~~~i~~~l 243 (245)
++.|+.|+. ++.+|.+|+++.+.+|++.|++...++.++|.+.+. ++.+ |++++++++++.|...+
T Consensus 158 ~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 158 PADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 567888884 899999999999999999999999999999999998 8888 79999999999987653
No 8
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=6.7e-37 Score=247.93 Aligned_cols=206 Identities=40% Similarity=0.734 Sum_probs=186.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH-----HcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK 105 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 105 (245)
.+.|+|+|+|||||||+|+.|+++||++++++++++++.. ..++..+. ...++..|..+|+.....++...+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3479999999999999999999999999999999999876 23445554 67788899999999998888877654
Q ss_pred CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970 106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG 185 (245)
Q Consensus 106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~ 185 (245)
..+||+||||++..|+..|... ..++.+|+|++|++++++|+.+|+.++.+|+.||..|.||..++.++.|+
T Consensus 82 ---~~~~IldG~pr~~~q~~~l~~~-----~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~ 153 (215)
T PRK14530 82 ---ADGFVLDGYPRNLEQAEYLESI-----TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECG 153 (215)
T ss_pred ---CCCEEEcCCCCCHHHHHHHHHh-----cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccC
Confidence 3589999999999998877653 35799999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
.++..|.+++.+.+++|+..|++.+.++.+||.+.+.++.|||+++++++++.|...|.+
T Consensus 154 ~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 154 GELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999888899999999999999999998863
No 9
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=225.36 Aligned_cols=188 Identities=34% Similarity=0.592 Sum_probs=173.2
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK 105 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 105 (245)
.+..+++|+|.|+|||||-|+|.+++++||+.|+|+++++|++... +++.|..+.+++++|..+|.++...++.+++..
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 4456889999999999999999999999999999999999999998 999999999999999999999999999999988
Q ss_pred CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970 106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG 185 (245)
Q Consensus 106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~ 185 (245)
....++|+|||||++..|...|+..+. ..+++++|+||+.+++++|+..|...
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~---~~~~fvl~fdc~ee~~l~Rll~R~q~------------------------ 136 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFERKIQ---GDPDFVLFFDCPEETMLKRLLHRGQS------------------------ 136 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHhhccc------------------------
Confidence 776677999999999999999998753 26899999999999999999999631
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..|.||+.+.+++|++.|.+...|+.+||++.++++.|+++.++++++..|...+.
T Consensus 137 ---~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 137 ---NSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred ---CCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 12679999999999999999999999999999999999999999999999988774
No 10
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.4e-36 Score=237.27 Aligned_cols=215 Identities=53% Similarity=0.912 Sum_probs=200.4
Q ss_pred ccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK 104 (245)
Q Consensus 25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 104 (245)
.+..+++..++++|+||+||+|++.++++.|++.|+++++++|..+...++.|...++++..|..+|++++..++...+.
T Consensus 9 ~~~~~~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~ 88 (235)
T KOG3078|consen 9 DEDEKKGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLE 88 (235)
T ss_pred ccccccceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcc
Confidence 34445788999999999999999999999999999999999999999999999999999999999999999997777787
Q ss_pred CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970 105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~ 184 (245)
...+.++|++||||++..++..+. .++..+|.+|.|.+|++.+.+|+..|+.|+.+|+.||..|+||...+.+|..
T Consensus 89 ~~~~~~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDit 164 (235)
T KOG3078|consen 89 NPRCQKGFILDGFPRTVQQAEELL----DRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDIT 164 (235)
T ss_pred ccccccccccCCCCcchHHHHHHH----HccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccc
Confidence 777889999999999999887633 4567899999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+++|.+|.+|.++.+..|+..|++...++.+||...+.+..+++.. .+++|..|...+.
T Consensus 165 gepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~ 223 (235)
T KOG3078|consen 165 GEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLS 223 (235)
T ss_pred cChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 8999999988764
No 11
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=1.7e-34 Score=243.55 Aligned_cols=192 Identities=45% Similarity=0.759 Sum_probs=174.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|+|+|||||||+|+.|++.||+++|+++++++.++..+++.|..+.+++..|..+|++++..++.+++....+.+|
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
|||||||++..|...|+.++...+..||++|+|++|++++++|+..|..+... ++ ...|
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-------------------rg--~~~R 139 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-------------------RG--EEVR 139 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------cC--CccC
Confidence 99999999999999999888777889999999999999999999998642100 01 1236
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+++.+.+++|+..|++.+.++.+||.+.+.++.||++.++++|+..|...|.
T Consensus 140 ~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~ 192 (333)
T PRK13808 140 ADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLA 192 (333)
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999988889999999999999999998874
No 12
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=1.1e-33 Score=223.94 Aligned_cols=185 Identities=42% Similarity=0.764 Sum_probs=170.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+.|+|+|+|||||||+|+.|++.||+++++++++++..+..++++|..+..++..|..+|+..+..++..++....+.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||||++..|+..|.+.+...+..++.+|+|+||++++++|+..|..+ .+|
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~---------------------------~gr 134 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI---------------------------EGR 134 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc---------------------------cCC
Confidence 99999999999999999888777778999999999999999999999642 136
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.+++.+.+.+|+..|++...++.++|...+.++.||+++++++++..|...+
T Consensus 135 ~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 135 ADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 7889999999999999999999999999999999999999999999998754
No 13
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=3.1e-33 Score=221.98 Aligned_cols=186 Identities=42% Similarity=0.726 Sum_probs=170.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|+|+|||||||+|+.|++++|+.++++++++++.+..+++.+..+..++..|..+|++++..++...+....+..|
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 46899999999999999999999999999999999999988899999999999999999999999999999887777789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||||++..|+..+.+.+...+..|+.+|+|++|++++.+|+.+|..+ ..|
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~---------------------------~~r 133 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE---------------------------QGR 133 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc---------------------------CCC
Confidence 99999999999999998888777888999999999999999999988521 125
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
++++.+.+.+|+..|+....++.++|.+.+.++.||++.+++++++.|...|.
T Consensus 134 ~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 134 PDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 77888899999999999999999999987889999999999999999998874
No 14
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=4.7e-33 Score=219.96 Aligned_cols=180 Identities=44% Similarity=0.751 Sum_probs=166.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+.|+|+|+|||||||+|+.|+++||++++++++++++++..+++.+..+..++..|..+|+.++..++..++... ..++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~g 81 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSGG 81 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCCc
Confidence 479999999999999999999999999999999999999989999999999999999999999999988887654 3568
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||||++..|+..|...+...+..++.+|+|+||++++.+|+..|. +
T Consensus 82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~-------------------------------r 130 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG-------------------------------R 130 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC-------------------------------C
Confidence 999999999999999988887777788999999999999999999984 4
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.+++.+.+.+|+..|++...++.++|...+.++.||+++++++++..|...|
T Consensus 131 ~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 131 ADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 6778899999999999999999999998889999999999999999998876
No 15
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=1.1e-32 Score=219.64 Aligned_cols=194 Identities=55% Similarity=0.930 Sum_probs=175.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF 112 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 112 (245)
+|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+..++..|..+|++++..++...+.......+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 48999999999999999999999999999999999998888889999999999999999999999999988776556799
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK 192 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~ 192 (245)
|+||||++..|+..|...+.. ...|+++|+|++|++++.+|+.+|..++.+|..||. ..++.|+.++..|.
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l~~r~ 151 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRS 151 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCccccCC
Confidence 999999999999988776432 236899999999999999999999999999999998 33445678899999
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHH
Q 025970 193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEV 235 (245)
Q Consensus 193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v 235 (245)
++..+.+++|+..|++.+.++.+||.+.+.++.||++++++++
T Consensus 152 dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 152 DDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999999999999998899999999998764
No 16
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=4.7e-32 Score=215.74 Aligned_cols=189 Identities=37% Similarity=0.636 Sum_probs=171.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP 106 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~ 106 (245)
....|++|+|+|+|||||||+++.|+++||+.++++++++++....+++++..+..++.+|..+|++++..++...+...
T Consensus 2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM 81 (191)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 34567899999999999999999999999999999999999998888999999999999999999999999999888765
Q ss_pred CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
.+ .+||+||||++..|+..|...+...+..++.+|+|+||++++.+|+.+|...
T Consensus 82 ~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~------------------------- 135 (191)
T PRK14527 82 EP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ------------------------- 135 (191)
T ss_pred CC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-------------------------
Confidence 44 5799999999999999888887777788899999999999999999998631
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.+|.+++.+.+++|++.|++...++.++|.+.+.++.||++++++++++.|...|
T Consensus 136 --~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 136 --EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 1367888999999999999999999999999889999999999999999998875
No 17
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.5e-32 Score=242.09 Aligned_cols=199 Identities=36% Similarity=0.681 Sum_probs=182.2
Q ss_pred EECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-CCceEE
Q 025970 36 LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC-EKGFIL 114 (245)
Q Consensus 36 i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~-~~~~ii 114 (245)
|+|+|||||||+|+.|+++|++.++++++++++++..++++|..+++++.+|..+|+..+..++.+++....+ .+|||+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL 81 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL 81 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999877553 478999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCC
Q 025970 115 DGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD 194 (245)
Q Consensus 115 dg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~ 194 (245)
||||++..|+..|.. .+..|+++|+|++|++++++|+.+|+.|+.||..||..+.||..+. +++++.+|.+|
T Consensus 82 DGfPRt~~Qa~~Le~----~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R~DD 153 (505)
T PLN02842 82 DGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITRPDD 153 (505)
T ss_pred eCCCCcHHHHHHHHh----cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccCCCC
Confidence 999999999887654 3468999999999999999999999999999999999999986543 34688999999
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 195 TAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 195 ~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.+++|++.|++...++.++|.. .++.||++.+++++++.|.+.|.
T Consensus 154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~ 201 (505)
T PLN02842 154 TEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLS 201 (505)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999964 68899999999999999988775
No 18
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-31 Score=211.57 Aligned_cols=182 Identities=44% Similarity=0.809 Sum_probs=167.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+.|+|+|+|||||||+|+.|++.||++++++++++++.+..+++.|..+..++..|..+|++++..++..++....+..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 57899999999999999999999999999999999999988899999999999999999999999999999887766789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||||++..|...+...+...+..|+.+|+|++|++++.+|+..|. +
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~-------------------------------~ 130 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG-------------------------------R 130 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC-------------------------------C
Confidence 999999999999988887776666789999999999999999999884 3
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.++..+.+++|+..|.+...++.++|...+.++.||++++++++++.|...|.
T Consensus 131 ~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 131 KDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 46678899999999999999999999887889999999999999999998774
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=4.7e-31 Score=208.56 Aligned_cols=182 Identities=29% Similarity=0.559 Sum_probs=162.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF 112 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 112 (245)
+|+|+|+|||||||+|+.|++++|+.++++++++++.+..+++.+..+..++.+|..+|++++..++..++.... .++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence 479999999999999999999999999999999999998888899999999999999999999999998887655 6789
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK 192 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~ 192 (245)
|+||||++..+...|...+. .+..|+.+|+|++|++++++|+..|... ..+.
T Consensus 80 vlDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l~~~~~~~~~Rl~~R~~~---------------------------~~r~ 131 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLMD-NKVNFKFVLFFDCPEEVMIKRLLKRGQS---------------------------SGRV 131 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHhcCCcc---------------------------CCCC
Confidence 99999999999998887653 3357899999999999999999998531 1245
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
+++.+.+++|+..|.+...++.++|...+.++.||++++++++++.|.+.|
T Consensus 132 dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 132 DDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 678899999999999999999999988778999999999999999999876
No 20
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=5e-31 Score=215.28 Aligned_cols=183 Identities=31% Similarity=0.558 Sum_probs=164.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
+.|++|+|+|+|||||||+|+.|++++|+.++++++++++.+...++.+..+..++..|..+|++....++..++....
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~- 119 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD- 119 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 4578999999999999999999999999999999999999998889999999999999999999999998888876543
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
..+|||||||++..|+..|.+.+ +..|+.+|+|++|++++.+|+.+|+.
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~Ld~~~e~~~~Rl~~R~~---------------------------- 168 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFFDCPEEEMVKRVLNRNQ---------------------------- 168 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEEECCHHHHHHHHHcCcC----------------------------
Confidence 46899999999999998887654 35789999999999999999998852
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.|.+++.+.+++|++.|++...++.++|.+.+.++.||++++++++++.|.+.+.
T Consensus 169 -~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~ 223 (234)
T PLN02200 169 -GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFA 223 (234)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 2456788999999999999999999999988889999999999999999998775
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=6e-30 Score=200.04 Aligned_cols=177 Identities=40% Similarity=0.787 Sum_probs=166.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|+|||||||+|+.|+++++++|+|++++++......++++..++.++..|..+|+.+...++..++...++..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999988876669
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||||++..|+..+...+.+.|...+.++.++++.+.++.|+..|.. |
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~------------------------------r 130 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV------------------------------R 130 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc------------------------------c
Confidence 9999999999999999999988888889999999999999999999852 5
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.++..+.+++|+..|++.+.++..+|. +.||+.++++++++.|.+.+
T Consensus 131 ~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 131 EDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 789999999999999999999999997 88999999999999998765
No 22
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=1.5e-29 Score=193.92 Aligned_cols=150 Identities=45% Similarity=0.879 Sum_probs=135.4
Q ss_pred EECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCceEEc
Q 025970 36 LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILD 115 (245)
Q Consensus 36 i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~iid 115 (245)
|+|+|||||||+|+.|+++||+++|++++++++.+..+++.|..+.+++.+|..+|++++..++..++....+..|||+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999887667899999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCc
Q 025970 116 GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDT 195 (245)
Q Consensus 116 g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~ 195 (245)
|||++..|+..|...+...+..|+.+|+|+||++.+.+|+.+ ++
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------d~ 124 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------DN 124 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------GS
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------CC
Confidence 999999999999987776778999999999999999999885 35
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC
Q 025970 196 AQVLKSRLEAFHKQTEPVIDYYAKKG 221 (245)
Q Consensus 196 ~~~~~~rl~~~~~~~~~l~~~~~~~~ 221 (245)
.+.+++|++.|+++..++.++|.+.+
T Consensus 125 ~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 125 EEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68899999999999999999998765
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=3.6e-27 Score=186.88 Aligned_cols=183 Identities=37% Similarity=0.593 Sum_probs=157.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK-PSCE 109 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~-~~~~ 109 (245)
-++|+|+|+|||||||+|+.|++.+|+.++++++++++.+...++.++.+...+..+..+|...+...+...+.. ...+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 358999999999999999999999999999999999998777778888888889999889988888887776654 3445
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
.+||+||+|++..+...+... ...|+.+|+|++|++++.+|+..|... .
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~----~~~~~~vi~l~~~~~~~~~Rl~~R~~~---------------------------~ 131 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERR----IGPPTLVLYFDCSEDTMVKRLLKRAET---------------------------S 131 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHc----CCCCCEEEEEECCHHHHHHHHHccccc---------------------------C
Confidence 789999999999888766532 246899999999999999999988520 1
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.|.+++.+.+.+|+..|++...++.++|...+.++.||++.+++++++.|...|+
T Consensus 132 ~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 132 GRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 2567788899999999999999999999877789999999999999999998875
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.78 E-value=4.9e-18 Score=137.16 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=117.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHHHcCCchHHHHHHHHHc--CCCCCHHHHHHHH--HHH-
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAVAAKTPLGIKAKEAMDK--GELVSDDLVVGII--DQA- 102 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l--~~~- 102 (245)
++.+|+|.|++||||||+++.|++.+....... ...+......++++|+.+++++.. +...++.....++ ..+
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999884221100 001111112367889999999863 2333444333332 222
Q ss_pred ------HcCCCCCCceEE-----------cCCCCCHH--HHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 103 ------MKKPSCEKGFIL-----------DGFPRTVV--QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 103 ------l~~~~~~~~~ii-----------dg~p~~~~--~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
+...-..+.+|| +|+|+... ....+...+. .+..|+++|+|+||++++.+|+..|.
T Consensus 82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~-~~~~pd~~i~ld~~~~~~~~R~~~R~---- 156 (212)
T PRK13974 82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIAT-QGLSPDLTFFLEISVEESIRRRKNRK---- 156 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence 111111223555 56666432 3444444332 35689999999999999999988763
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
++ .++.+...|++...+...+|.+.+.++.||++++++++++.|.++|
T Consensus 157 -----------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l 204 (212)
T PRK13974 157 -----------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETL 204 (212)
T ss_pred -----------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHH
Confidence 11 2445667888888888889988888999999999999999998876
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 205 ~ 205 (212)
T PRK13974 205 L 205 (212)
T ss_pred H
Confidence 4
No 25
>PRK01184 hypothetical protein; Provisional
Probab=99.76 E-value=2e-16 Score=125.00 Aligned_cols=170 Identities=20% Similarity=0.219 Sum_probs=111.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CC-----chHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KT-----PLGIKAKEAMDKGELVSDDLVVGIIDQAMKK 105 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~-----~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 105 (245)
++|+|+|+|||||||+++ +++++|++++++++++++.+.. +. .++......... +....+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh
Confidence 489999999999999987 7789999999999999998742 22 234444333221 1123333343344433
Q ss_pred CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970 106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG 185 (245)
Q Consensus 106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~ 185 (245)
.....+|+||+ +...+...+.+.+ ..+..+|+++||++++.+|+..|...
T Consensus 78 -~~~~~vvidg~-r~~~e~~~~~~~~----~~~~~~i~v~~~~~~~~~Rl~~R~~~------------------------ 127 (184)
T PRK01184 78 -KGDEVVVIDGV-RGDAEVEYFRKEF----PEDFILIAIHAPPEVRFERLKKRGRS------------------------ 127 (184)
T ss_pred -cCCCcEEEeCC-CCHHHHHHHHHhC----CcccEEEEEECCHHHHHHHHHHcCCC------------------------
Confidence 23467999998 6777777665543 23458999999999999999987410
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
....+.+.+.+|...... .++.+.+...+ +.|+++.+++++...|.+.++
T Consensus 128 -----~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~ 177 (184)
T PRK01184 128 -----DDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLE 177 (184)
T ss_pred -----CChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHH
Confidence 001235666666654321 22444444434 456678899999999887654
No 26
>PRK03839 putative kinase; Provisional
Probab=99.75 E-value=8.5e-17 Score=126.71 Aligned_cols=151 Identities=18% Similarity=0.292 Sum_probs=95.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|+|||||||+++.|+++++++++++|+++++. .++..... .+. .....+...+.......+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EME-----IDFDKLAYFIEEEFKEKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hhh-----cCHHHHHHHHHHhccCCC
Confidence 47999999999999999999999999999999988652 11111100 000 111222222222122456
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
+|+||+... + ..++.+|+|+++++++.+|+..|... +
T Consensus 68 vIidG~~~~---------l-----~~~~~vi~L~~~~~~~~~Rl~~R~~~-----------------------------~ 104 (180)
T PRK03839 68 VVLDGHLSH---------L-----LPVDYVIVLRAHPKIIKERLKERGYS-----------------------------K 104 (180)
T ss_pred EEEEecccc---------c-----cCCCEEEEEECCHHHHHHHHHHcCCC-----------------------------H
Confidence 999997421 1 35789999999999999999877410 0
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
+. ..+....+ +.+ ..+.+.|.....++.||++ .+++++++.|.+.|.
T Consensus 105 ~~-~~~~~~~~---~~~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 105 KK-ILENVEAE---LVD--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred HH-HHHHHHHH---HHH--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 00 01111111 111 1223445555678899996 699999999988775
No 27
>PRK13973 thymidylate kinase; Provisional
Probab=99.73 E-value=4.3e-16 Score=125.91 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=103.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh---Ccceeeh--------HHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLAT--------GDMLRSAVAAK--TPLGIKAKEAMDKGELVSDDLVVG 97 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~--------~~li~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~ 97 (245)
+++|+|.|++||||||+++.|++.+ |+.++.+ +..+|+.+... ...+.....++-.+ .....+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~ 80 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE 80 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence 6899999999999999999999999 8877765 44444443321 11122222111111 00112222
Q ss_pred HHHHHHcCCCCCCceEEcCCC----------CC--HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 98 IIDQAMKKPSCEKGFILDGFP----------RT--VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 98 ~l~~~l~~~~~~~~~iidg~p----------~~--~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
.+...+.. +..+|.|.|- .. ..+...+..... .+..||++|+|+||++++.+|+.+|......
T Consensus 81 ~i~~~l~~---g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~-~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~- 155 (213)
T PRK13973 81 VIRPALAR---GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAI-NGVMPDLTLILDIPAEVGLERAAKRRGSDTP- 155 (213)
T ss_pred HHHHHHHC---CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhccCCCcc-
Confidence 33333332 2234445543 21 123333332221 2367999999999999999999988521100
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCC-CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKD-DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+.+ ...+.++++.+.|.+.. +++ .+.++.||++.++++++..|..++.
T Consensus 156 ------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~~e~V~~~I~~~i~ 205 (213)
T PRK13973 156 ------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATASPEAVAAEIWAAVD 205 (213)
T ss_pred ------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 0112 23455556666665533 222 2368899999999999999988764
No 28
>PRK06217 hypothetical protein; Validated
Probab=99.72 E-value=5.1e-16 Score=122.62 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=106.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+.|+|+|+|||||||+++.|++.+|++++++|++++.. .+.+.+ ...+.+.....+...+. ...+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR---PREG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh---cCCC
Confidence 57999999999999999999999999999999887531 111111 11233333444444432 2357
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||++.... .. .+ ..++.+|||++|.+++++|+..|..... |+ |+..++ .
T Consensus 67 ~vi~G~~~~~~--~~---~~----~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~-~~-------~~~~~~-----------~ 118 (183)
T PRK06217 67 WVLSGSALGWG--DP---LE----PLFDLVVFLTIPPELRLERLRLREFQRY-GN-------RILPGG-----------D 118 (183)
T ss_pred EEEEccHHHHH--HH---HH----hhCCEEEEEECCHHHHHHHHHcCccccc-Cc-------ccCCCC-----------C
Confidence 99999875431 11 11 3468999999999999999999964221 10 000000 0
Q ss_pred CCCcHHHHHHHHHHHHH------hhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 192 KDDTAQVLKSRLEAFHK------QTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~------~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
.+.....+.++...|.. .......|+.. ...++.+++..+++++++.|...|.+
T Consensus 119 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 119 MHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred HHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 01112233344434432 22333334443 25678899999999999999998864
No 29
>PRK08356 hypothetical protein; Provisional
Probab=99.71 E-value=2.5e-16 Score=125.61 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=81.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc----CC---chHHH----HHHHHHcCCCCCH----HH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA----KT---PLGIK----AKEAMDKGELVSD----DL 94 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~----~~---~~~~~----i~~~l~~~~~~~~----~~ 94 (245)
+.++|+|+|+|||||||+|+.|+ ++|+.++++++.++..... .+ ..+.. ...++..|..+++ .+
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34789999999999999999996 5899999998755432221 11 11111 1234444444443 45
Q ss_pred HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 95 ~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+.++..+.+.. ...+++||+ ++..+...|... ...+|++++|++++.+|+..|.
T Consensus 83 ~~~~~~~~~~~---~~~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 83 LIRLAVDKKRN---CKNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred HHHHHHHHhcc---CCeEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHhcC
Confidence 55565555532 235999999 999988876541 2479999999999999999885
No 30
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.69 E-value=9.6e-16 Score=117.54 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=95.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~l~~~l~~~~~~ 109 (245)
.+.|+++|++||||||+++.||+.++++++++|.+|.+. .+..+.++|...+. -....-...+.+.+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--- 72 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEED--- 72 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence 467899999999999999999999999999999999885 34455555554221 11111222222222221
Q ss_pred CceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 110 KGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 110 ~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
..+|-.|. ......... +.+. ..+|||++|.+++++|+..... +|
T Consensus 73 ~~ViaTGGG~v~~~enr~~----l~~~----g~vv~L~~~~e~l~~Rl~~~~~-------------------------RP 119 (172)
T COG0703 73 NAVIATGGGAVLSEENRNL----LKKR----GIVVYLDAPFETLYERLQRDRK-------------------------RP 119 (172)
T ss_pred CeEEECCCccccCHHHHHH----HHhC----CeEEEEeCCHHHHHHHhccccC-------------------------CC
Confidence 23333332 222233332 2222 3799999999999999995432 22
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+..+. .+.+ .. .+..-..+|.+.. .+.++++...+++...|.+.|.
T Consensus 120 ll~~~~~-~~~l----~~---L~~~R~~~Y~e~a-~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 120 LLQTEDP-REEL----EE---LLEERQPLYREVA-DFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred cccCCCh-HHHH----HH---HHHHHHHHHHHhC-cEEecCCCCcHHHHHHHHHHHH
Confidence 2222222 1222 22 2233334454432 3556666555888888887663
No 31
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.68 E-value=2.4e-15 Score=119.75 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=107.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC------CCCHHHHH---------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE------LVSDDLVV--------- 96 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~--------- 96 (245)
++|+|+|++||||||+++.|++.+|++++++|.+.+..+..+++.+..+.+.|..+. .++...+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999999999999999999999888888888877765322 22211111
Q ss_pred ---------HHH----HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 97 ---------GII----DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 97 ---------~~l----~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
.++ ...+........++++ .|..... .+ ...+|.+|+++||.+++.+|+..|.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~-------~~~~D~ii~V~a~~e~r~~Rl~~R~---- 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KL-------TDLCSEIWVVDCSPEQQLQRLIKRD---- 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--ch-------HhCCCEEEEEECCHHHHHHHHHHcC----
Confidence 111 1122221111223333 2322211 01 1357999999999999999999884
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
+.+.+.+.+|+... + +....-...+ ++|+++.+.+++...|.+.+
T Consensus 148 -----------------------------g~s~e~~~~ri~~Q---~-~~~~k~~~aD--~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 148 -----------------------------GLTEEEAEARINAQ---W-PLEEKVKLAD--VVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred -----------------------------CCCHHHHHHHHHhC---C-CHHHHHhhCC--EEEECCCCHHHHHHHHHHHH
Confidence 33556677777542 2 2222222223 46788999999999998765
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 193 ~ 193 (195)
T PRK14730 193 K 193 (195)
T ss_pred h
Confidence 3
No 32
>PRK13949 shikimate kinase; Provisional
Probab=99.68 E-value=4.9e-15 Score=115.39 Aligned_cols=162 Identities=15% Similarity=0.233 Sum_probs=96.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
.|+|+|+|||||||+++.|++.++++++++|.++.+... ..+.+++. .|..........++.. +. ...+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~---~~~~ 72 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VA---EFED 72 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HH---hCCC
Confidence 689999999999999999999999999999998876432 22333332 2222222233333333 22 1235
Q ss_pred eEE-cC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 112 FIL-DG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 112 ~ii-dg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
+|+ +| .+........+.. .+++|||++|.+.+.+|+..+... +++
T Consensus 73 ~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~~~~------------------------RP~ 120 (169)
T PRK13949 73 VVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLAKQQ------------------------RPL 120 (169)
T ss_pred EEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcCCCC------------------------CCC
Confidence 666 43 4455555554432 368999999999999999854210 111
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhh
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVL 243 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l 243 (245)
.. +.+.+.+.. .+.+.+.....+|...+ ++||. +.+++++++.|.+.+
T Consensus 121 ~~--~~~~~~~~~---~i~~l~~~R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 121 LK--GKSDEELLD---FIIEALEKRAPFYRQAK--IIFNADKLEDESQIEQLVQRL 169 (169)
T ss_pred CC--CCChHHHHH---HHHHHHHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHhC
Confidence 11 111222322 22333344444566544 45554 458899999887753
No 33
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.67 E-value=1e-14 Score=116.44 Aligned_cols=175 Identities=25% Similarity=0.293 Sum_probs=104.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcC-CCCCHHHHHHHH------
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-ELVSDDLVVGII------ 99 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~l------ 99 (245)
.+++|+|.|+.||||||+++.|++.+ |+.++-+ + .+.++++|..+++++.++ ..+.+....-+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----r--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----R--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999988 3333332 1 134688999999998886 344443322222
Q ss_pred --HHHHcC-CCCCCceEEcCCCCCHHHHH------------HHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 100 --DQAMKK-PSCEKGFILDGFPRTVVQAE------------KLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 100 --~~~l~~-~~~~~~~iidg~p~~~~~~~------------~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
...+.. ...+..+|.|.|-.+....+ .+.+.... +..||++++||+|+++.++|+.+|....
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~-~~~PD~ti~Ldv~~e~al~R~~~r~~~~-- 152 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPG-GLKPDLTLYLDVPPEVALERIRKRGELR-- 152 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccC-CCCCCEEEEEeCCHHHHHHHHHhcCCcc--
Confidence 112211 11234566676644332111 11111111 4589999999999999999999986310
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHhh
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKK-GVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.....+. . ..+.+......+..+.. ..+++||++.+++++.+.|.+++
T Consensus 153 ---------------------------~r~E~~~--~--~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l 201 (208)
T COG0125 153 ---------------------------DRFEKED--D--EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKIL 201 (208)
T ss_pred ---------------------------chhhhHH--H--HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHH
Confidence 0111101 0 11111112222222221 25899999999999999998877
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 202 ~ 202 (208)
T COG0125 202 K 202 (208)
T ss_pred H
Confidence 4
No 34
>PRK13975 thymidylate kinase; Provisional
Probab=99.67 E-value=1.1e-14 Score=116.04 Aligned_cols=173 Identities=16% Similarity=0.184 Sum_probs=96.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH-HHH------H
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DQA------M 103 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l-~~~------l 103 (245)
+++|+|.|++||||||+++.|+++++..+... ..++..|..+++++..+ ...+..+..++ ..+ +
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998532211 11234455566655443 22222111111 111 1
Q ss_pred cCCCCCCceEEcCCCCCH-HHH------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCC
Q 025970 104 KKPSCEKGFILDGFPRTV-VQA------EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPK 176 (245)
Q Consensus 104 ~~~~~~~~~iidg~p~~~-~~~------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~ 176 (245)
........+|.|.+.... ... ..+...+......|+++|+|++|++++.+|+..|..+
T Consensus 73 ~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~--------------- 137 (196)
T PRK13975 73 EEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE--------------- 137 (196)
T ss_pred HHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc---------------
Confidence 110112467888764321 110 0011111122257899999999999999999987410
Q ss_pred CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
.....+.+++....|.+... ..+|.....++.||++ .+++++++.|.+.|.
T Consensus 138 ---------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~ 189 (196)
T PRK13975 138 ---------------IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIK 189 (196)
T ss_pred ---------------ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 01122333333344444332 2222222357899985 899999999988764
No 35
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.65 E-value=2.6e-15 Score=119.59 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=106.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHHHH---------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLVVG--------- 97 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~--------- 97 (245)
.+|+|+|++||||||+++.|++ +|++++++|.+.++.+.++++....+.+.+..+ +.+....+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 999999999999998887777777776665432 2233221111
Q ss_pred ---------HHHH----HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 98 ---------IIDQ----AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 98 ---------~l~~----~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
.+.. .+.......-++++. |.-... +....+|.+|++++|++++.+|+..|.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~---------~~~~~~D~vi~V~a~~e~~~~Rl~~R~----- 146 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN---------GLEKLVDRVLVVDAPPETQLERLMARD----- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC---------CchhhCCeEEEEECCHHHHHHHHHHcC-----
Confidence 1111 121111112334443 322211 111347999999999999999999873
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.+.+..|+..+.. ..+.....+ ++|+++++++++..++...++
T Consensus 147 ----------------------------~~s~e~~~~ri~~Q~~----~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 147 ----------------------------GLSEEEAEAIIASQMP----REEKLARAD--DVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred ----------------------------CCCHHHHHHHHHHhCC----HHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 3456677777765322 222222222 678888999999999988764
No 36
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.64 E-value=1.1e-14 Score=109.27 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=73.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
|+|.|.|+|||||||+++.||++||+++++++.++|+.... +-.+.. +..+-+.+-. +...+..+.......+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~e-f~~~AE~~p~-----iD~~iD~rq~e~a~~~ 74 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEE-FSRYAEEDPE-----IDKEIDRRQKELAKEG 74 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHH-HHHHHhcCch-----hhHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999986542 222211 1122222221 2222222222222245
Q ss_pred ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.+|++|.... |++. ..+++-|+|.+|.++..+|+..|.
T Consensus 75 nvVlegrLA~--------Wi~k---~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 75 NVVLEGRLAG--------WIVR---EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred CeEEhhhhHH--------HHhc---cccceEEEEeCcHHHHHHHHHHhc
Confidence 6888875211 1211 357899999999999999999984
No 37
>PRK13948 shikimate kinase; Provisional
Probab=99.63 E-value=3.3e-14 Score=111.71 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPS 107 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~ 107 (245)
+++..|+|+|++||||||+++.|++.+|..++++|.++++.. |..+.+++.. |.....+....++...+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~--- 78 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTR--- 78 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHh---
Confidence 466789999999999999999999999999999998887753 3333344432 221111222222322221
Q ss_pred CCCceEEc-C--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 108 CEKGFILD-G--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 108 ~~~~~iid-g--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
..+.||. | .+........+. . ...+|||++|++++.+|+..
T Consensus 79 -~~~~VIa~GgG~v~~~~n~~~l~----~----~g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 79 -LDYAVISLGGGTFMHEENRRKLL----S----RGPVVVLWASPETIYERTRP 122 (182)
T ss_pred -cCCeEEECCCcEEcCHHHHHHHH----c----CCeEEEEECCHHHHHHHhcC
Confidence 1233443 2 233333333322 1 24689999999999999953
No 38
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.63 E-value=3.3e-15 Score=126.86 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=108.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
+++|++.|+|||||||+|+.|++.+ ++.+++.|.+.+. +......+.. .+...+...-.......+...+. .+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~g 75 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQS-LFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK---SG 75 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHH-hcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH---cC
Confidence 3688999999999999999999999 8999999775433 3221111110 00000000001112222222222 34
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
..+|+|+.+....+...+..++...+..+ .+|+|++|.+++.+|+.+|..+.
T Consensus 76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~~--------------------------- 127 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGERA--------------------------- 127 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcCC---------------------------
Confidence 57999999999888888777666665444 46999999999999999985211
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhH
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKE 234 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~ 234 (245)
-+.+......++++.|...+.++...+......+.+|.+.++.+
T Consensus 128 -~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 128 -VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred -CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 12223334448888888888888766665456777787776654
No 39
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.63 E-value=3.3e-14 Score=110.99 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=66.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
..|+|+|++||||||+++.|++.+|+++++.|.++.... +..+.+++.... .......-...+.... ...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g---~~~~~~~e~~~~~~~~-~~~ 72 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREG---WAGFRARESAALEAVT-APS 72 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHC---HHHHHHHHHHHHHHhc-CCC
Confidence 368899999999999999999999999999998876642 112222222111 1222121112221111 123
Q ss_pred eEE-cC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 112 FIL-DG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 112 ~ii-dg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.|+ .| ++........+ . ..+++|+|++|++++.+|+..|.
T Consensus 73 ~vi~~ggg~vl~~~~~~~l----~----~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 73 TVIATGGGIILTEENRHFM----R----NNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred eEEECCCCccCCHHHHHHH----H----hCCEEEEEECCHHHHHHHHcccc
Confidence 344 33 23333333322 1 23579999999999999998863
No 40
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.63 E-value=1.2e-14 Score=116.29 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=106.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----HHH--------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV-----VGI-------- 98 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~-------- 98 (245)
++|.|+|++||||||+++.|++ +|++++++|.+.++.+.++++....+.+.+..+...++..+ ..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 3789999999999999999987 89999999999999998888877777777765433322111 111
Q ss_pred ----------H----HHHHcCC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 99 ----------I----DQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 99 ----------l----~~~l~~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
+ ...+... ..+..+++-..|.-... +....+|.+|++++|+++.++|+..|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~---------g~~~~~D~vi~V~a~~e~ri~Rl~~R~---- 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK---------GLDRKMDLVVVVDVDVEERVRRLVEKR---- 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc---------CccccCCeEEEEECCHHHHHHHHHHcC----
Confidence 1 1111100 01112222222221110 111357999999999999999999873
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
+.+.+.+.+|+..+... .......+ ++|+++.+++++..++...+
T Consensus 148 -----------------------------g~s~e~~~~ri~~Q~~~----~~k~~~ad--~vI~N~g~~e~l~~~v~~~~ 192 (200)
T PRK14734 148 -----------------------------GLDEDDARRRIAAQIPD----DVRLKAAD--IVVDNNGTREQLLAQVDGLI 192 (200)
T ss_pred -----------------------------CCCHHHHHHHHHhcCCH----HHHHHhCC--EEEECcCCHHHHHHHHHHHH
Confidence 34567777777764433 22222222 57899999999998888765
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
+
T Consensus 193 ~ 193 (200)
T PRK14734 193 A 193 (200)
T ss_pred H
Confidence 3
No 41
>PLN02924 thymidylate kinase
Probab=99.62 E-value=1.7e-14 Score=116.74 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=103.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH-HHHHHcC-
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-IDQAMKK- 105 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-l~~~l~~- 105 (245)
++++++|+|.|++||||||+++.|++.+....+.+ .++++ ...++..|+.+++++..+..+.+....-+ ...+...
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999996554443 22222 12357788888888876544444322211 1111111
Q ss_pred ------CCCCCceEEcCCCCCHH-HH------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC
Q 025970 106 ------PSCEKGFILDGFPRTVV-QA------EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF 172 (245)
Q Consensus 106 ------~~~~~~~iidg~p~~~~-~~------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~ 172 (245)
+..+..+|.|.|..+.. .. ..+...+......||++|+|++|++++.+|...+. +
T Consensus 91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~------~------ 158 (220)
T PLN02924 91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG------E------ 158 (220)
T ss_pred HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc------c------
Confidence 12234577887755321 11 01111222233679999999999999999954221 0
Q ss_pred CCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+ -+.. ..+.++ +.|.+. .+ ..+++||++.+++++++.|.+.|.
T Consensus 159 ------------------~-~E~~-~~~~rv~~~Y~~l--------a~-~~~~vIDa~~sieeV~~~I~~~I~ 202 (220)
T PLN02924 159 ------------------R-YEKL-EFQKKVAKRFQTL--------RD-SSWKIIDASQSIEEVEKKIREVVL 202 (220)
T ss_pred ------------------c-cccH-HHHHHHHHHHHHH--------hh-cCEEEECCCCCHHHHHHHHHHHHH
Confidence 0 0111 222222 222221 11 357889999999999999988764
No 42
>PLN02422 dephospho-CoA kinase
Probab=99.60 E-value=4.2e-14 Score=114.73 Aligned_cols=163 Identities=18% Similarity=0.120 Sum_probs=104.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH------------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLV------------ 95 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------------ 95 (245)
+|+|+|++||||||+++.|+ ++|++++++|.+.++.+.++++....+.+.|.. .+.++...+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 69999999999999999998 689999999999999998877666666655532 122322221
Q ss_pred ------HHHHHHHHc----CC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 96 ------VGIIDQAMK----KP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 96 ------~~~l~~~l~----~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
...+...+. .. .....+++=..|.-.+. ++...+|.+|+++||+++.++|+..|+
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---------~~~~~~D~vI~V~a~~e~ri~RL~~R~----- 147 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---------KMDKWTKPVVVVWVDPETQLERLMARD----- 147 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---------chhhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 112111111 00 01123333233433221 111357999999999999999999984
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.+.+.+|++.. .+........+ +.|+++++.+++..++.+.++
T Consensus 148 ----------------------------g~s~eea~~Ri~~Q----~~~eek~~~AD--~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 148 ----------------------------GLSEEQARNRINAQ----MPLDWKRSKAD--IVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred ----------------------------CCCHHHHHHHHHHc----CChhHHHhhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 34567777777442 22222222223 578888999999988887654
No 43
>PRK04040 adenylate kinase; Provisional
Probab=99.60 E-value=1.5e-13 Score=108.71 Aligned_cols=176 Identities=18% Similarity=0.092 Sum_probs=102.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCc--hHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTP--LGIKAKEAMDKGELVSDDLVVGIIDQAMKKP 106 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~ 106 (245)
+++|+|+|+|||||||+++.|++++ ++.+++.+++++.......- ....+. .-..-...-+..+....+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r----~l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR----KLPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHh----hCChhhhHHHHHHHHHHHHHh
Confidence 6799999999999999999999999 89999999998776543211 111111 111001111222333344333
Q ss_pred CCCCceEEcCCCCCHHHHH----HHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCC
Q 025970 107 SCEKGFILDGFPRTVVQAE----KLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD 182 (245)
Q Consensus 107 ~~~~~~iidg~p~~~~~~~----~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~ 182 (245)
.....+|+||+.......- .-.+.+. ...|+.+|+|++|++++.+|......
T Consensus 78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~d~~---------------------- 133 (188)
T PRK04040 78 AGEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLRDET---------------------- 133 (188)
T ss_pred hcCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhcccc----------------------
Confidence 3334588998642111100 0011121 15789999999999999888774200
Q ss_pred CCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh---cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK---KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~---~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
-.|..++.+.++.+++.... ...+|.. .-.++.++.+..+++.++.|.++|.
T Consensus 134 ------R~R~~es~e~I~~~~~~a~~----~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 134 ------RRRDVETEEDIEEHQEMNRA----AAMAYAVLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred ------cCCCCCCHHHHHHHHHHHHH----HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 01345566677666554322 2233332 1234445545559999999988763
No 44
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.60 E-value=2.6e-14 Score=113.63 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=105.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHH----------------
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL---------------- 94 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~---------------- 94 (245)
.++|.|+|.+||||||+++.|++ +|++++++|+++|+...++++....+...+.....-++..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 46899999999999999999998 9999999999999999988777776666554322111111
Q ss_pred -------HHHHHHHHHcC-CC-CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 95 -------VVGIIDQAMKK-PS-CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 95 -------~~~~l~~~l~~-~~-~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
...++...+.. .. ...++++-..|. |.+.. ....++.+|+++||+++.++|+.+|.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eipl-------L~e~~--~~~~~d~Vi~V~a~~e~r~eRl~~R~------ 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPL-------LFEAG--GEKYFDKVIVVYAPPEIRLERLMKRD------ 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEchH-------HHhcc--ccccCCEEEEEECCHHHHHHHHHhcC------
Confidence 11111111100 00 011133322321 11110 01237899999999999999999984
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..+.+....++........ .+...+ ++++++.+++++.++|.+.++
T Consensus 146 ---------------------------~~~~e~~~~~~~~Q~~~~e----k~~~ad--~vi~n~~~i~~l~~~i~~~~~ 191 (201)
T COG0237 146 ---------------------------GLDEEDAEARLASQRDLEE----KLALAD--VVIDNDGSIENLLEQIEKLLK 191 (201)
T ss_pred ---------------------------CCCHHHHHHHHHhcCCHHH----HHhhcC--ChhhcCCCHHHHHHHHHHHHH
Confidence 4556666666665333332 233333 568899999999999887654
No 45
>PRK13947 shikimate kinase; Provisional
Probab=99.59 E-value=5.6e-14 Score=109.63 Aligned_cols=109 Identities=18% Similarity=0.289 Sum_probs=65.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
.|+|+|+|||||||+++.||+.+|+++++.|.+++... |..+.+++.. |..........++. .+.. ...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~~~-~l~~---~~~ 72 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLLVK-KLAR---LKN 72 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHHHH-HHhh---cCC
Confidence 58999999999999999999999999999998876642 2222222222 21111111111222 2211 123
Q ss_pred eEEc-C--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 112 FILD-G--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 112 ~iid-g--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.|+. | .+........ +.+. +.+|||+++++.+.+|+..|.
T Consensus 73 ~vi~~g~g~vl~~~~~~~----l~~~----~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 73 LVIATGGGVVLNPENVVQ----LRKN----GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred eEEECCCCCcCCHHHHHH----HHhC----CEEEEEECCHHHHHHHhcCCC
Confidence 3332 2 2233333222 2222 479999999999999998764
No 46
>PRK00625 shikimate kinase; Provisional
Probab=99.59 E-value=6.2e-14 Score=109.36 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|+|+|||||||+++.|++++|++++++|+++++..... ....+.+.+...+ ...+...-...+........
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l~~~~~ 75 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSLPVIPS 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHhccCCe
Confidence 479999999999999999999999999999999998754321 1112333333211 11222222122222222333
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+|.+|...... ...+. .+. ....+|+|++|.+++.+|+..|.
T Consensus 76 VIs~GGg~~~~-~e~~~-~l~----~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 76 IVALGGGTLMI-EPSYA-HIR----NRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred EEECCCCccCC-HHHHH-HHh----cCCEEEEEECCHHHHHHHHhcCC
Confidence 44444222111 12222 221 22579999999999999999874
No 47
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.59 E-value=5.3e-14 Score=106.98 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=95.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|.||+||||+|+.|+ ++|+.+++..+++.+. .+.....+ ......++.+.+...+...+ ...+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-----~~~~~~de-~r~s~~vD~d~~~~~le~~~----~~~~ 69 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-----GLYTEYDE-LRKSVIVDVDKLRKRLEELL----REGS 69 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-----CCeeccCC-ccceEEeeHHHHHHHHHHHh----ccCC
Confidence 689999999999999999999 9999999998876652 11110000 00011223333444444333 2356
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
.|+|++.. +++ ..||++|.|.++++.+.+|+..|...++
T Consensus 70 ~Ivd~H~~---------hl~----~~~dlVvVLR~~p~~L~~RLk~RGy~~e---------------------------- 108 (180)
T COG1936 70 GIVDSHLS---------HLL----PDCDLVVVLRADPEVLYERLKGRGYSEE---------------------------- 108 (180)
T ss_pred eEeechhh---------hcC----CCCCEEEEEcCCHHHHHHHHHHcCCCHH----------------------------
Confidence 88988632 121 2489999999999999999999964221
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l~ 244 (245)
--.+.+++.+-. -......+++ ..++.||. +.+++++.+.|.+++.
T Consensus 109 --KI~ENveAEi~~--vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~ 155 (180)
T COG1936 109 --KILENVEAEILD--VILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIG 155 (180)
T ss_pred --HHHHHHHHHHHH--HHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHc
Confidence 011222222111 1111122222 35777876 7999999999998875
No 48
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.59 E-value=3.5e-14 Score=113.89 Aligned_cols=175 Identities=19% Similarity=0.165 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcCCchHHHHHHHHHc--CCCCCHHHHHHHHHHH--
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAKTPLGIKAKEAMDK--GELVSDDLVVGIIDQA-- 102 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~-- 102 (245)
++++|+|.|++||||||+++.|++.++. .++.. .. ..++..+..+...+.. ....+.......+..+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998732 22211 00 1134456666666653 1222211111111111
Q ss_pred -----HcC-CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 103 -----MKK-PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 103 -----l~~-~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
+.. ...+..+|+|.++.+. .....+...+.. ...||++|+|++|++++.+|+..|....
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~pd~~i~l~~~~~~~~~Rl~~R~~~~-- 152 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALG-GFRPDLTLYLDVPPEVGLARIRARGELD-- 152 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhC-CCCCCEEEEEeCCHHHHHHHHHhcCCcc--
Confidence 111 1223467788554332 112222222221 2569999999999999999999985100
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.....+..++..++. .+.+. ....++.||++.+++++++.|.+.|.
T Consensus 153 --------------------------~~~~~~~~~~~~~~~~y~---~~~~~--~~~~~~~Id~~~~~e~v~~~i~~~i~ 201 (205)
T PRK00698 153 --------------------------RIEQEGLDFFERVREGYL---ELAEK--EPERIVVIDASQSLEEVHEDILAVIK 201 (205)
T ss_pred --------------------------hhhhhhHHHHHHHHHHHH---HHHHh--CCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 001111122333332211 11111 12357889999999999999988764
No 49
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.58 E-value=7.3e-14 Score=109.03 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
+.++.|+|+|+|||||||+++.|++.+|+.+++.|.+++.... ......... .|...........+......
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~--- 73 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFEE---EGEAAFRELEEEVLAELLAR--- 73 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhc---
Confidence 4567999999999999999999999999999999988765432 222221111 11110011122222222221
Q ss_pred CCceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...+|..|. ........ .+. ....+|||++|.+.+.+|+..+.
T Consensus 74 ~~~vi~~g~~~~~~~~~r~----~l~----~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 74 HNLVISTGGGAVLREENRA----LLR----ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred CCCEEEeCCCEeecHHHHH----HHH----hCCEEEEEECCHHHHHHHhcCCC
Confidence 123444332 11112222 221 12479999999999999998764
No 50
>PRK08233 hypothetical protein; Provisional
Probab=99.58 E-value=2.3e-14 Score=112.72 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=92.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS- 107 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~- 107 (245)
++++|+|.|+|||||||+|+.|++.++. .++..|.. +.. .....+...+..+... +......+...+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 74 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFD-----NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA 74 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Ecc-----cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence 4689999999999999999999999963 33333222 110 0011122222222222 1112222222222111
Q ss_pred -CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 108 -CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 108 -~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
.+..+|+..+|....... +. ..+|.+|+|++|.+++++|...|...
T Consensus 75 ~~~~~~vivd~~~~~~~~~-~~-------~~~d~~i~l~~~~~~~~~R~~~R~~~------------------------- 121 (182)
T PRK08233 75 KSNVDYIIVDYPFAYLNSE-MR-------QFIDVTIFIDTPLDIAMARRILRDFK------------------------- 121 (182)
T ss_pred CCCceEEEEeeehhhccHH-HH-------HHcCEEEEEcCCHHHHHHHHHHHHhh-------------------------
Confidence 122455544454322211 11 24689999999999999998877420
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHH-HHHHHh--cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPV-IDYYAK--KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l-~~~~~~--~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.+.+..++..|.....+. .+++.. ....+.||++.+++++++.|.+.|.
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 122 ------EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred ------hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 111123445566665544332 222222 1235779999999999999998774
No 51
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.58 E-value=6e-14 Score=103.78 Aligned_cols=159 Identities=19% Similarity=0.307 Sum_probs=106.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
..|.|+|+|.||+||||+|++||+.+|+.+|.+++++++. .+.....+. -....++++.+.+.+...+..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~-y~c~i~DEdkv~D~Le~~m~~---- 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEE-YKCHILDEDKVLDELEPLMIE---- 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhccccc-ccCccccHHHHHHHHHHHHhc----
Confidence 4668999999999999999999999999999999998762 111110000 012355677788888777654
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
.|.|+|-+....-.. -.+|++|+|.||.+++.+|+..|..+..
T Consensus 76 Gg~IVDyHgCd~Fpe-----------rwfdlVvVLr~~~s~LY~RL~sRgY~e~-------------------------- 118 (176)
T KOG3347|consen 76 GGNIVDYHGCDFFPE-----------RWFDLVVVLRTPNSVLYDRLKSRGYSEK-------------------------- 118 (176)
T ss_pred CCcEEeecccCccch-----------hheeEEEEEecCchHHHHHHHHcCCCHH--------------------------
Confidence 578998765543111 2468999999999999999999864210
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
... +.+ ..+.|.-......+.|+. ++++.+.++.. +++...|..++
T Consensus 119 -Ki~---eNi--ecEIfgv~~eea~eSy~~-~iV~eL~s~~~-Eem~~ni~ri~ 164 (176)
T KOG3347|consen 119 -KIK---ENI--ECEIFGVVLEEARESYSP-KIVVELQSETK-EEMESNISRIL 164 (176)
T ss_pred -HHh---hhc--chHHHHHHHHHHHHHcCC-cceeecCcCCH-HHHHHHHHHHH
Confidence 000 111 123333344555666654 37777877666 88888776654
No 52
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=3.6e-14 Score=114.28 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=105.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc--------CC-CCCHHHHH----
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK--------GE-LVSDDLVV---- 96 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~--------~~-~~~~~~~~---- 96 (245)
.+++|.|+|++||||||+++.|++ +|++++++|.+.+....++......+...+.. |. .+....+.
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 467899999999999999999986 89999999999988776655443444433321 11 12211111
Q ss_pred ------------------HHHHHHHcCC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 97 ------------------GIIDQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 97 ------------------~~l~~~l~~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
..+...+... ..+..+++-+.|.-... .....+|.+|++++|++++.+|+..
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~---------~~~~~~d~ii~V~a~~e~~~~Rl~~ 153 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES---------GGDAGLDFIVVVAADTELRLERAVQ 153 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec---------CchhcCCeEEEEECCHHHHHHHHHH
Confidence 1111111111 11223444334432211 1113569999999999999999999
Q ss_pred CcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHH
Q 025970 158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTV 237 (245)
Q Consensus 158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~ 237 (245)
|. ..+.+.+.+|+..+......+. .. -+.|+++.+++++..
T Consensus 154 R~---------------------------------~~s~e~~~~Ri~~q~~~~~~~~----~a--d~vI~N~g~~e~l~~ 194 (208)
T PRK14731 154 RG---------------------------------MGSREEIRRRIAAQWPQEKLIE----RA--DYVIYNNGTLDELKA 194 (208)
T ss_pred cC---------------------------------CCCHHHHHHHHHHcCChHHHHH----hC--CEEEECCCCHHHHHH
Confidence 84 3366788888877555444332 21 256788999999999
Q ss_pred HHHHhhc
Q 025970 238 EVQKVLS 244 (245)
Q Consensus 238 ~i~~~l~ 244 (245)
+|...++
T Consensus 195 ~i~~~~~ 201 (208)
T PRK14731 195 QTEQLYQ 201 (208)
T ss_pred HHHHHHH
Confidence 9987764
No 53
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=2.2e-13 Score=108.71 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=103.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc----CCCCCHHH----------
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK----GELVSDDL---------- 94 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~----~~~~~~~~---------- 94 (245)
-.|..|.|+|++||||||+++.|++.+|++++++|.+.++.+.+ ......+.+.+.. .+.++...
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE 82 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence 34678999999999999999999999999999999999888764 3333333333322 11222211
Q ss_pred --------HHHHH----HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970 95 --------VVGII----DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP 162 (245)
Q Consensus 95 --------~~~~l----~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~ 162 (245)
+...+ ...+... ....+++| .|.-.+.... ....+|.+|++.||+++.++|+..|.
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~-~~~~vv~e-ipLL~E~~~~-------~~~~~D~vi~V~a~~e~ri~Rl~~Rd--- 150 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKES-DTVMTIVD-IPLLGPYNFR-------HYDYLKKVIVIKADLETRIRRLMERD--- 150 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc-CCCeEEEE-echhhhccCc-------hhhhCCEEEEEECCHHHHHHHHHHcC---
Confidence 11111 1222211 11223344 2332211000 01246899999999999999999874
Q ss_pred CCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHH
Q 025970 163 ASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-PPKEVTVEVQK 241 (245)
Q Consensus 163 ~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~~e~v~~~i~~ 241 (245)
+.+.+.+.+|++.. .+..+.....+ ++|++++ +.+++..+|.+
T Consensus 151 ------------------------------~~s~~~a~~ri~~Q----~~~eek~~~aD--~VI~N~g~~~~~l~~~~~~ 194 (204)
T PRK14733 151 ------------------------------GKNRQQAVAFINLQ----ISDKEREKIAD--FVIDNTELTDQELESKLIT 194 (204)
T ss_pred ------------------------------CCCHHHHHHHHHhC----CCHHHHHHhCC--EEEECcCCCHHHHHHHHHH
Confidence 34567777777552 22333333333 5677888 99999999987
Q ss_pred hhc
Q 025970 242 VLS 244 (245)
Q Consensus 242 ~l~ 244 (245)
.++
T Consensus 195 ~~~ 197 (204)
T PRK14733 195 TIN 197 (204)
T ss_pred HHH
Confidence 764
No 54
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.57 E-value=5.3e-13 Score=106.27 Aligned_cols=174 Identities=20% Similarity=0.225 Sum_probs=96.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHH-H-------HH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVSDDLV-V-------GI 98 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~-~-------~~ 98 (245)
++|+|.|++||||||+++.|++.+ |..++.... ..++..+..++.++.... ....... . ..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 555444321 112234555555554331 1111110 0 01
Q ss_pred HHHHHcC-CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 99 IDQAMKK-PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 99 l~~~l~~-~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
+...+.. ...+..+|+|.++... .....+.... .....|+.+|+|++|++++.+|+..|....
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--- 150 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA-TGGLKPDLTILLDIDPEVGLARIEARGRDD--- 150 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence 1111111 1223467778654332 1222222222 223578999999999999999999885210
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
........+..++... ...+...+ ...++.||++.+++++++.|.+.|.+
T Consensus 151 -------------------------~~~~~~~~~~~~~~~~---y~~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~~ 200 (200)
T cd01672 151 -------------------------RDEQEGLEFHERVREG---YLELAAQE--PERIIVIDASQPLEEVLAEILKAILE 200 (200)
T ss_pred -------------------------hhhhhhHHHHHHHHHH---HHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHhC
Confidence 0001112222222221 11111111 13578999999999999999988753
No 55
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.57 E-value=3.1e-14 Score=112.87 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=102.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHH-----------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLVV----------- 96 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~----------- 96 (245)
+|+|+|.+||||||+++.|++..|++++++|.+.++.+..+.+....+.+.+.. .+.+....+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999877999999999999988877666666555431 2222211111
Q ss_pred -----------HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 97 -----------GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 97 -----------~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
..+...+........+|+-+.|..... .+ ...+|.+|++++|.+++.+|+..|.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~~-------~~~~D~vv~V~~~~~~~~~Rl~~R~------ 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--KL-------RSLCDRVIVVDVSPQLQLERLMQRD------ 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--Cc-------HHhCCEEEEEECCHHHHHHHHHHcC------
Confidence 111222222211112444333332211 11 1346899999999999999999884
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHH
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ 240 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~ 240 (245)
+.+.+.+.+|+.... +........+ ++|+++.+++++..+|.
T Consensus 146 ---------------------------~~s~~~~~~r~~~q~----~~~~~~~~ad--~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 ---------------------------NLTEEEVQKRLASQM----DIEERLARAD--DVIDNSATLADLVKQLE 187 (188)
T ss_pred ---------------------------CCCHHHHHHHHHhcC----CHHHHHHhCC--EEEECCCCHHHHHHHHh
Confidence 445677777776642 2222222222 56788999999988875
No 56
>PLN02199 shikimate kinase
Probab=99.57 E-value=3.3e-13 Score=112.09 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHH
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLV 95 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~ 95 (245)
+.+.+..+. .-.++..|+|+|.+||||||+++.|++.+|++++++|.++++... |..+.+++.. |.....+..
T Consensus 89 Lk~~a~~i~-~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E 162 (303)
T PLN02199 89 LKRKAEEVK-PYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKE 162 (303)
T ss_pred HHHHHHHHH-HHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHH
Confidence 444554444 233466899999999999999999999999999999999988532 2233333332 322112222
Q ss_pred HHHHHHHHcCCCCCCceEE-cCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 96 VGIIDQAMKKPSCEKGFIL-DGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 96 ~~~l~~~l~~~~~~~~~ii-dg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
...+.. .....+.|| .|. +.....+. .+. . ..+|||++|.+++.+|+..
T Consensus 163 ~e~L~~----L~~~~~~VIStGGG~V~~~~n~~----~L~-~----G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 163 TDALKK----LSSRYQVVVSTGGGAVIRPINWK----YMH-K----GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred HHHHHH----HHhcCCEEEECCCcccCCHHHHH----HHh-C----CeEEEEECCHHHHHHHHhh
Confidence 223332 221223344 332 22222222 221 1 4799999999999999985
No 57
>PRK13946 shikimate kinase; Provisional
Probab=99.57 E-value=1.3e-13 Score=108.88 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=95.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS 107 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~ 107 (245)
+..++.|+|+|++||||||+++.|++.+|++++++|.++.... +......+.. .|..........++...+..
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~-- 79 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG-- 79 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--
Confidence 3456789999999999999999999999999999998776543 2222221111 11111111222233332211
Q ss_pred CCCceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970 108 CEKGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG 185 (245)
Q Consensus 108 ~~~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~ 185 (245)
...+|.+|. .........+. ...++|+|++|++++.+|+..|...+
T Consensus 80 -~~~Vi~~ggg~~~~~~~r~~l~--------~~~~~v~L~a~~e~~~~Rl~~r~~rp----------------------- 127 (184)
T PRK13946 80 -GPLVLATGGGAFMNEETRAAIA--------EKGISVWLKADLDVLWERVSRRDTRP----------------------- 127 (184)
T ss_pred -CCeEEECCCCCcCCHHHHHHHH--------cCCEEEEEECCHHHHHHHhcCCCCCC-----------------------
Confidence 223444443 22333333222 12578999999999999999874211
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.. ..+..+.++... .....+|...+ +....++.+++++++.|.+.++
T Consensus 128 --~~~-~~~~~~~i~~~~-------~~R~~~y~~~d-l~i~~~~~~~~~~~~~i~~~i~ 175 (184)
T PRK13946 128 --LLR-TADPKETLARLM-------EERYPVYAEAD-LTVASRDVPKEVMADEVIEALA 175 (184)
T ss_pred --cCC-CCChHHHHHHHH-------HHHHHHHHhCC-EEEECCCCCHHHHHHHHHHHHH
Confidence 111 111222222222 22223454433 4455678999999999888764
No 58
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.57 E-value=2.7e-13 Score=108.03 Aligned_cols=121 Identities=23% Similarity=0.205 Sum_probs=67.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHHH--------H
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVSDDLVV--------G 97 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~--------~ 97 (245)
+++|+|.|++||||||+++.|++.++. .++-.. ...+++.+..+++++..+. ...+.... .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999843 222110 0123456666666544322 22211110 1
Q ss_pred HHHHHHcC-CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 98 IIDQAMKK-PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 98 ~l~~~l~~-~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.+...+.. ...+..+|+|.+..+. .....+...+.. ..|+++|+|++|++++++|+..|.
T Consensus 77 ~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~--~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 77 HLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALG--DMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhC--CCCCEEEEEeCCHHHHHHHHHhcC
Confidence 11111111 1122346677542221 111222211110 148999999999999999999885
No 59
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.57 E-value=4.8e-13 Score=104.15 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=71.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~ 110 (245)
|+|+|.|++||||||+++.|++.+|+++++.+++++............+........ .+...+...+.... ...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999988877654421111111111111111 11222222222221 235
Q ss_pred ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
++|++|..... .+ ...++++|+|++|++++.+|+..|.
T Consensus 76 ~~Vi~g~~~~~--------~~---~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 76 NVVLESRLAGW--------IV---REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CEEEEecccce--------ee---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 78888853221 11 1346799999999999999999874
No 60
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.57 E-value=1.2e-13 Score=107.92 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=89.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
...|+|+|++||||||+++.|++.+++.++++|..+..... ...+ ..+.. |...-...-..++.. +.. .
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~----~~~~~~g~~~fr~~e~~~l~~-l~~---~ 73 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIG----WVFDVEGEEGFRDREEKVINE-LTE---K 73 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHh----HHHHHhCHHHHHHHHHHHHHH-HHh---C
Confidence 45799999999999999999999999999999887665432 1111 11111 110000111122222 211 2
Q ss_pred CceEEc-CC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 110 KGFILD-GF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 110 ~~~iid-g~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
..+++. |. +........|. ..+.+|||++|.+++.+|+..+...|
T Consensus 74 ~~~vi~~ggg~v~~~~~~~~l~--------~~~~vv~L~~~~e~~~~Ri~~~~~rP------------------------ 121 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP------------------------ 121 (172)
T ss_pred CCEEEEcCCchhCCHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC------------------------
Confidence 234443 22 22222223222 22589999999999999998654211
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeC-CCChhHHHHHHHHhhcC
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHA-EKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~-~~~~e~v~~~i~~~l~~ 245 (245)
+... ....+ .+........+ +|.. .+ ++||+ +.+++++.+.|.+.+.+
T Consensus 122 -~~~~-~~~~~----~~~~l~~~R~~---~Y~~~Ad--~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 122 -LLQV-DDPRE----VLEALANERNP---LYEEIAD--VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred -CCCC-CCHHH----HHHHHHHHHHH---HHHhhCC--EEEECCCCCHHHHHHHHHHHHhh
Confidence 1111 11111 13333333333 4443 23 44565 58999999999887753
No 61
>PRK08118 topology modulation protein; Reviewed
Probab=99.56 E-value=1e-13 Score=107.81 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=72.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+.|+|+|+|||||||+|+.|++.++++++++|.++... ....++++....++...+. ..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~----~~~ 61 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK----EDE 61 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc----CCC
Confidence 47999999999999999999999999999998876431 0122334444444444443 247
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
||+||.+..... . .+ ..+|.+|+|++|.+++..|+..|..
T Consensus 62 wVidG~~~~~~~-~----~l----~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 62 WIIDGNYGGTMD-I----RL----NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEEeCCcchHHH-H----HH----HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 999996443321 1 11 2479999999999999999999864
No 62
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.56 E-value=7.4e-14 Score=108.29 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=112.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH---------------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG--------------- 97 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--------------- 97 (245)
++.++|..||||||+++.|. .+|+++|++|.+.|+...++++..+.+.+.|......++..+.+
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~ 81 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ 81 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence 67899999999999999997 89999999999999999999999999988887653333321111
Q ss_pred -------------HHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 98 -------------IIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 98 -------------~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
++.+.......+..+|+=..|.-.+- . +. .....+|.+-|+.+..++|+..|.
T Consensus 82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~-~~-------~~~~~tvvV~cd~~~Ql~Rl~~Rd----- 147 (225)
T KOG3220|consen 82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-K-LL-------KICHKTVVVTCDEELQLERLVERD----- 147 (225)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-h-HH-------hheeeEEEEEECcHHHHHHHHHhc-----
Confidence 11111111112223333334433322 1 11 234578999999999999999874
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
..+.+..++|+.. ..++.+..+..+ +++|++.+++++.+.|..++
T Consensus 148 ----------------------------~lse~dAe~Rl~s----Qmp~~~k~~~a~--~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 148 ----------------------------ELSEEDAENRLQS----QMPLEKKCELAD--VVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred ----------------------------cccHHHHHHHHHh----cCCHHHHHHhhh--eeecCCCChHHHHHHHHHHH
Confidence 4466777778775 455555555434 67999999999999988765
No 63
>PRK07933 thymidylate kinase; Validated
Probab=99.56 E-value=8.7e-14 Score=112.34 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=93.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcC--CC-CCHHHHH-HHHHHHHc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKG--EL-VSDDLVV-GIIDQAMK 104 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~--~~-~~~~~~~-~~l~~~l~ 104 (245)
|+|+|.|+.||||||+++.|++.+. ..++-+. .....+++.|..+++.+... .. ....... -....+..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLA----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 5899999999999999999999983 3333221 00001344566666655532 11 1111111 11111111
Q ss_pred C-------CCCCCceEEcCCCCCHHH--H-----------HHHHHHHHh---cCCCccEEEEEecCHHHHHHHHhCCccc
Q 025970 105 K-------PSCEKGFILDGFPRTVVQ--A-----------EKLDEMLEK---QGTKIDKVLNFAIDDSILEERITGRWIH 161 (245)
Q Consensus 105 ~-------~~~~~~~iidg~p~~~~~--~-----------~~l~~~~~~---~~~~~~~vi~L~~~~e~~~~R~~~r~~~ 161 (245)
. +..+..+|.|.|..+... . ..+...+.. ....||++|+|++|++++.+|+..|...
T Consensus 77 ~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~ 156 (213)
T PRK07933 77 ARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ 156 (213)
T ss_pred hHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence 1 122345677776444311 1 111111211 1247999999999999999999988521
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh--cCcEEEEeCCCChhHHHHHH
Q 025970 162 PASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK--KGVLAQLHAEKPPKEVTVEV 239 (245)
Q Consensus 162 ~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~--~~~~~~id~~~~~e~v~~~i 239 (245)
. .+.. ..+-+...+.+++-.+.|.+ .... ...++.||++.+++++.+.|
T Consensus 157 ~-~~~~---------------------~d~~E~~~~f~~~v~~~Y~~-------~~~~~~~~~~~~ida~~~~e~v~~~i 207 (213)
T PRK07933 157 D-ADRA---------------------RDAYERDDGLQQRTGAVYAE-------LAAQGWGGPWLVVDPDVDPAALAARL 207 (213)
T ss_pred c-CCcc---------------------cccccccHHHHHHHHHHHHH-------HHHhcCCCCeEEeCCCCCHHHHHHHH
Confidence 0 0000 00001111122221222222 2222 23788999999999999999
Q ss_pred HHhh
Q 025970 240 QKVL 243 (245)
Q Consensus 240 ~~~l 243 (245)
.+.|
T Consensus 208 ~~~~ 211 (213)
T PRK07933 208 AAAL 211 (213)
T ss_pred HHHh
Confidence 8876
No 64
>PRK04182 cytidylate kinase; Provisional
Probab=99.56 E-value=3.5e-13 Score=105.76 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=70.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~l~~~l~~~~~~ 109 (245)
|+|+|+|++||||||+++.|++.+|+++++++++++............+.. .+...+ ...+...+.. +. ...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~--~~~ 74 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK---YAEEDPEIDKEIDRRQLE-IA--EKE 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH---HhhcCchHHHHHHHHHHH-HH--hcC
Confidence 589999999999999999999999999999988888765432111111111 122111 1112222211 11 023
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.++|++|.-... .+. ..++++|+|++|++++.+|+..|.
T Consensus 75 ~~~Vi~g~~~~~--------~~~---~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 75 DNVVLEGRLAGW--------MAK---DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCEEEEEeecce--------Eec---CCCCEEEEEECCHHHHHHHHHhcc
Confidence 578888742111 110 126799999999999999999874
No 65
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.55 E-value=2.9e-13 Score=110.83 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=104.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHHH---------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLVVG--------- 97 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~--------- 97 (245)
++|.|+|++||||||+++.|++.+|+++|++|.+.++...++.+....+.+.|.. ++.++...+..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999899999999999999988887766666655532 12232221111
Q ss_pred ---------HH----HHHHcC---------CC-CCC-ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHH
Q 025970 98 ---------II----DQAMKK---------PS-CEK-GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153 (245)
Q Consensus 98 ---------~l----~~~l~~---------~~-~~~-~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~ 153 (245)
.+ ...+.. .. .+. .+|+| .|.-.+.. + ....+|.+|++++|.++..+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E~~--~------~~~~~D~iv~V~a~~e~ri~ 152 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFETK--T------FTYFVSASVVVSCSEERQIE 152 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhccC--c------hhhcCCeEEEEECCHHHHHH
Confidence 11 111110 00 112 34444 33322110 0 01246999999999999999
Q ss_pred HHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CC
Q 025970 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE--KP 231 (245)
Q Consensus 154 R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~--~~ 231 (245)
|+..|+ +.+.+.+.+|+..-. +..+.-...+ ++|+++ ++
T Consensus 153 RL~~R~---------------------------------g~s~eea~~Ri~~Q~----~~~ek~~~aD--~VI~N~~~g~ 193 (244)
T PTZ00451 153 RLRKRN---------------------------------GFSKEEALQRIGSQM----PLEEKRRLAD--YIIENDSADD 193 (244)
T ss_pred HHHHcC---------------------------------CCCHHHHHHHHHhCC----CHHHHHHhCC--EEEECCCCCC
Confidence 999873 446678888886521 1222222222 456677 89
Q ss_pred hhHHHHHHHHhh
Q 025970 232 PKEVTVEVQKVL 243 (245)
Q Consensus 232 ~e~v~~~i~~~l 243 (245)
++++..+|.+.+
T Consensus 194 ~~~L~~~v~~~~ 205 (244)
T PTZ00451 194 LDELRGSVCDCV 205 (244)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 66
>PRK06762 hypothetical protein; Provisional
Probab=99.55 E-value=2.6e-13 Score=105.41 Aligned_cols=159 Identities=12% Similarity=0.078 Sum_probs=96.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
|++|+|.|+|||||||+|+.|++.+ ++.+++.|.+-+. +..... .. .......+..+....+ ..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~-l~~~~~---------~~-~~~~~~~~~~~~~~~~---~~ 67 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD-MLRVKD---------GP-GNLSIDLIEQLVRYGL---GH 67 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH-hccccC---------CC-CCcCHHHHHHHHHHHH---hC
Confidence 5789999999999999999999998 5677887655432 211100 00 0011122222222222 12
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
+..+|+|+..........+..+.... ..+..+|+|++|.+++.+|..+|...
T Consensus 68 g~~vild~~~~~~~~~~~~~~l~~~~-~~~~~~v~Ldap~e~~~~R~~~R~~~--------------------------- 119 (166)
T PRK06762 68 CEFVILEGILNSDRYGPMLKELIHLF-RGNAYTYYFDLSFEETLRRHSTRPKS--------------------------- 119 (166)
T ss_pred CCEEEEchhhccHhHHHHHHHHHHhc-CCCeEEEEEeCCHHHHHHHHhccccc---------------------------
Confidence 34688888754444444455444433 33668999999999999999988520
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.....+.++.+++.+. .+. . . -.+.++.+.+++++.+.|...+
T Consensus 120 ---~~~~~~~l~~~~~~~~----~~~-~---~-~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 120 ---HEFGEDDMRRWWNPHD----TLG-V---I-GETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred ---ccCCHHHHHHHHhhcC----CcC-C---C-CeEEecCCCCHHHHHHHHHHHh
Confidence 1123445544443321 111 1 1 2366677899999999998765
No 67
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.5e-13 Score=102.24 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=106.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCCC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD----LVVGIIDQAMKKPSC 108 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~l~~~l~~~~~ 108 (245)
.|++.|++||||||+++.|++++++.+++.|++= ...-.+.+..|..+.|+ |+.++-.........
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H----------p~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~ 83 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH----------PPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALAS 83 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCC----------CHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999999998861 22224456667766553 444433333333345
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHh--cCC---CccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCC
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEK--QGT---KIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV 183 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~--~~~---~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~ 183 (245)
..++|+-+......++..+.+.+.. .+. .--.+|+|.++.+++.+|+..|..|- .|
T Consensus 84 ~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF----------Mp--------- 144 (191)
T KOG3354|consen 84 GQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF----------MP--------- 144 (191)
T ss_pred CCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccccc----------CC---------
Confidence 6788987776666666666654431 111 11368999999999999999997432 22
Q ss_pred CCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhh
Q 025970 184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVL 243 (245)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l 243 (245)
.+-++.++.. ++.--.+...++.|+.. .++++++..|.+.+
T Consensus 145 ------------~~lleSQf~~-------LE~p~~~e~div~isv~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 145 ------------ADLLESQFAT-------LEAPDADEEDIVTISVKTYSVEEIVDTIVKMV 186 (191)
T ss_pred ------------HHHHHHHHHh-------ccCCCCCccceEEEeeccCCHHHHHHHHHHHH
Confidence 1223322221 11001122257888886 99999998887755
No 68
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.53 E-value=5.4e-13 Score=121.54 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=77.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCC
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKP 106 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~ 106 (245)
|.|.+.|+|+|+|||||||+++.||+.+|++++++|..+.+. .|..+.+++.. |..-..+.-.+.+.+....
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~- 75 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED- 75 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 567778999999999999999999999999999999998874 34445555532 3222222333333332211
Q ss_pred CCCCceEEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 107 SCEKGFILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 107 ~~~~~~iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
.+.+|-.| .+........|.+++.+. ..+|||++|++++.+|+..+
T Consensus 76 --~~~VIs~GGG~v~~~~n~~~L~~~~~~~----g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 76 --FDGIFSLGGGAPMTPSTQHALASYIAHG----GRVVYLDADPKEAMERANRG 123 (542)
T ss_pred --CCeEEECCCchhCCHHHHHHHHHHHhcC----CEEEEEECCHHHHHHHHhCC
Confidence 12333232 344444444444343332 37999999999999998754
No 69
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.9e-13 Score=100.14 Aligned_cols=154 Identities=21% Similarity=0.244 Sum_probs=100.2
Q ss_pred ECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCCCCCce
Q 025970 37 IGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD----LVVGIIDQAMKKPSCEKGF 112 (245)
Q Consensus 37 ~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~l~~~l~~~~~~~~~ 112 (245)
.|..||||||+++.|++++|..+|+.|++ ....-.+.+..|..+.|+ |+..+-.........++..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdl----------Hp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDL----------HPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceeccccc----------CCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 48999999999999999999999999876 122234456778777664 3433333333323334445
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK 192 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~ 192 (245)
|+-+......++..|... ... -.+|||+.+.+++.+|++.|..|-. |
T Consensus 71 vi~CSALKr~YRD~LR~~----~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM----------~------------------ 117 (161)
T COG3265 71 VIACSALKRSYRDLLREA----NPG-LRFVYLDGDFDLILERMKARKGHFM----------P------------------ 117 (161)
T ss_pred EEecHHHHHHHHHHHhcc----CCC-eEEEEecCCHHHHHHHHHhcccCCC----------C------------------
Confidence 665555555565554431 122 4799999999999999999974322 2
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..-++.++ ..++.--.+. .++.||.+.+++++.+.+...++
T Consensus 118 ---~~ll~SQf-------a~LE~P~~de-~vi~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 118 ---ASLLDSQF-------ATLEEPGADE-DVLTIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred ---HHHHHHHH-------HHhcCCCCCC-CEEEeeCCCCHHHHHHHHHHHHh
Confidence 12222222 2222222222 58999999999999999888765
No 70
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.51 E-value=1.3e-13 Score=108.06 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHH------------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDL------------ 94 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~------------ 94 (245)
|+|.|+|+.||||||+++.|++ +|++++++|.+.++.+.++++....+.+.|... +.++...
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999988 999999999999999888888777777766532 2232221
Q ss_pred ------HHHH----HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 95 ------VVGI----IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 95 ------~~~~----l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
+..+ +...+........++++ .|.-.+. ++...+|.+|++.||.++.++|+..|.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~---------~~~~~~D~vi~V~a~~e~ri~Rl~~R~----- 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES---------GLEKLCDEVIVVYAPEEIRIKRLMERD----- 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT---------TGGGGSSEEEEEE--HHHHHHHHHHHH-----
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh---------hHhhhhceEEEEECCHHHHHHHHHhhC-----
Confidence 1112 12222222112334444 3432211 111357999999999999999999884
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhH
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKE 234 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~ 234 (245)
+.+.+.+..|+.. ..+..+.....+ ++|+++++.++
T Consensus 145 ----------------------------~~~~~~~~~ri~~----Q~~~~~k~~~ad--~vI~N~g~~~~ 180 (180)
T PF01121_consen 145 ----------------------------GLSEEEAEARIAS----QMPDEEKRKRAD--FVIDNNGSLEE 180 (180)
T ss_dssp ----------------------------TSTHHHHHHHHHT----S--HHHHHHH-S--EEEE-SSHHH-
T ss_pred ----------------------------CCcHHHHHHHHHh----CCCHHHHHHhCC--EEEECCCCCCC
Confidence 4466677777654 233333333333 56777777654
No 71
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=2.9e-13 Score=107.78 Aligned_cols=162 Identities=11% Similarity=0.142 Sum_probs=104.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHH--------------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDD-------------- 93 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~-------------- 93 (245)
.|+|+|++||||||+++.|++ +|++++++|.+.+..+.++.+....+.+.|... +.+...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 478999999999999999975 799999999999998887777666666554321 222221
Q ss_pred ----HHHHHHHH----HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 94 ----LVVGIIDQ----AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 94 ----~~~~~l~~----~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
++...+.. .+.... ...+++-..|.-.+.. ....+|.+|++++|+++..+|+..|.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~pLL~E~~---------~~~~~D~vi~V~a~~e~r~~RL~~R~------ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTA-EGKLVIWEVPLLFETD---------AYTLCDATVTVDSDPEESILRTISRD------ 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh-cCCcEEEEeeeeeEcC---------chhhCCEEEEEECCHHHHHHHHHHcC------
Confidence 11112211 111111 1234443344433211 11346999999999999999999883
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.+.+..|+..- + +..+.-...+ ++|+++.+.+++..+|...++
T Consensus 144 ---------------------------g~s~e~a~~ri~~Q---~-~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~ 189 (196)
T PRK14732 144 ---------------------------GMKKEDVLARIASQ---L-PITEKLKRAD--YIVRNDGNREGLKEECKILYS 189 (196)
T ss_pred ---------------------------CCCHHHHHHHHHHc---C-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 34567788887652 1 3333333333 467788899999999887653
No 72
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.50 E-value=9.9e-13 Score=103.47 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=77.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-----CCCH---------------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-----LVSD--------------- 92 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-----~~~~--------------- 92 (245)
+|+|+|++||||||+++.|++ +|++++++|.+.++....+......+.+.+..+. .+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999998 9999999999999988887777777777664321 2221
Q ss_pred ---HHHHHHHHHHH----cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 93 ---DLVVGIIDQAM----KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 93 ---~~~~~~l~~~l----~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.++...+...+ .... ...+++-..|...... + ...+|.+|++++|+++.++|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~-~~~~vive~plL~e~~--~-------~~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEAR-KEKVVVLDIPLLFETG--L-------EKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CCCEEEEEehHhhcCC--c-------HHhCCeEEEEECCHHHHHHHHHHcC
Confidence 11222222221 1111 1234432233332211 1 1356999999999999999999884
No 73
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.50 E-value=1.3e-12 Score=101.09 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=88.0
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCCC
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~l~~~l~~~~~~ 109 (245)
|+|.|++||||||+++.|+..++..+++.|++...... .. ...+.... ..+...+..........+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLNDASTAAAAKN 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999886422100 00 00011111 122222221111111112
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
...|++...........+ ...+. .-.+|+|++|++++.+|+..|..+
T Consensus 71 ~~~Vi~~t~~~~~~r~~~----~~~~~-~~~~i~l~~~~e~~~~R~~~R~~~---------------------------- 117 (163)
T TIGR01313 71 KVGIITCSALKRHYRDIL----REAEP-NLHFIYLSGDKDVILERMKARKGH---------------------------- 117 (163)
T ss_pred CCEEEEecccHHHHHHHH----HhcCC-CEEEEEEeCCHHHHHHHHHhccCC----------------------------
Confidence 223554432322222222 23332 335799999999999999988410
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
....+.+..++..+.. + ......++.||++.+++++.+.|...|
T Consensus 118 ---~~~~~~i~~~~~~~~~---~----~~~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 118 ---FMKADMLESQFAALEE---P----LADETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred ---CCCHHHHHHHHHHhCC---C----CCCCCceEEEECCCCHHHHHHHHHHHH
Confidence 0112344444433211 0 011125789999999999999988765
No 74
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.49 E-value=1.2e-12 Score=106.33 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=91.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHH--HHHHHHcCCchHH------HHHHHHHcCC---CCCHHHHHHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM--LRSAVAAKTPLGI------KAKEAMDKGE---LVSDDLVVGIIDQ 101 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l--i~~~~~~~~~~~~------~i~~~l~~~~---~~~~~~~~~~l~~ 101 (245)
+|+|.|+.||||||+++.|++.++..++..... .......++..+. .++.+..... .........++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 489999999999999999999998755533211 0000001112221 1333332211 1222221112222
Q ss_pred HHcC--------CCCCCceEEcCCCCCHH-H--------------HHHHH---HHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970 102 AMKK--------PSCEKGFILDGFPRTVV-Q--------------AEKLD---EMLEKQGTKIDKVLNFAIDDSILEERI 155 (245)
Q Consensus 102 ~l~~--------~~~~~~~iidg~p~~~~-~--------------~~~l~---~~~~~~~~~~~~vi~L~~~~e~~~~R~ 155 (245)
+... ...+..+|+|.++.+.. . ...+. ..+......||++|||++|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 2111 22345788888744321 1 11111 111112267999999999999999999
Q ss_pred hCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CChh
Q 025970 156 TGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE--KPPK 233 (245)
Q Consensus 156 ~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~--~~~e 233 (245)
..|....+ ...+.+. ..++..++..+. ...|.....++.+|++ .+.+
T Consensus 161 ~~R~~~~e----------------------------~~~~~~y-l~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e 209 (219)
T cd02030 161 KKRGDPHE----------------------------MKVTSAY-LQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTE 209 (219)
T ss_pred HHcCCchh----------------------------hcccHHH-HHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHH
Confidence 98852100 0112222 222322222221 1113334578899998 8888
Q ss_pred HHHHHHHH
Q 025970 234 EVTVEVQK 241 (245)
Q Consensus 234 ~v~~~i~~ 241 (245)
+++..|..
T Consensus 210 ~i~~~I~~ 217 (219)
T cd02030 210 KVVEDIEY 217 (219)
T ss_pred HHHHHHHc
Confidence 88888754
No 75
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.47 E-value=2.1e-12 Score=110.01 Aligned_cols=131 Identities=13% Similarity=0.157 Sum_probs=75.3
Q ss_pred hHHHHHHHHhc---cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCC
Q 025970 15 DMMTELLRRFK---CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELV 90 (245)
Q Consensus 15 ~~~~~~~~~~~---~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~ 90 (245)
+...++++.+. .-+.++..|+|+|+|||||||+++.|++.+|++++++|..+.+... ..+.+++. .|...
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G------~~i~ei~~~~G~~~ 187 (309)
T PRK08154 114 ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG------LSVSEIFALYGQEG 187 (309)
T ss_pred HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC------CCHHHHHHHHCHHH
Confidence 34445554433 3556788999999999999999999999999999999987766422 11222221 12111
Q ss_pred CHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 91 SDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
........+...+.. ....|+............+..++ ...++|||++|++++.+|+..|.
T Consensus 188 fr~~e~~~l~~ll~~---~~~~VI~~Ggg~v~~~~~~~~l~-----~~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 188 YRRLERRALERLIAE---HEEMVLATGGGIVSEPATFDLLL-----SHCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred HHHHHHHHHHHHHhh---CCCEEEECCCchhCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHhcCC
Confidence 111222223332221 12344432211111111122221 12479999999999999998864
No 76
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.46 E-value=1.7e-12 Score=113.95 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=100.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH------------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLV------------ 95 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~------------ 95 (245)
+|.|+|++||||||+++.|++ +|+++|++|.+.++.+.+++.....+.+.+..+ +.++...+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~ 81 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA 81 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 689999999999999999987 899999999999998887765544554444322 22222111
Q ss_pred ------HHHHH----HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 96 ------VGIID----QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 96 ------~~~l~----~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
...+. ..+... .+..+++.+.|.-.... ....+|.+|++++|.+++++|+..|+
T Consensus 82 ~le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~---------~~~~~D~iI~V~ap~e~ri~Rl~~rR------ 145 (395)
T PRK03333 82 VLNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESG---------MAPLFHLVVVVDADVEVRVRRLVEQR------ 145 (395)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCC---------chhhCCEEEEEECCHHHHHHHHHhcC------
Confidence 11122 122121 12346666655433211 11356899999999999999998853
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+.+....++..... ..+.....+ ++|+++.+++++...|.+.++
T Consensus 146 ---------------------------g~s~~~a~~ri~~Q~~----~e~k~~~AD--~vIdN~~s~e~l~~~v~~~l~ 191 (395)
T PRK03333 146 ---------------------------GMAEADARARIAAQAS----DEQRRAVAD--VWLDNSGTPDELVEAVRALWA 191 (395)
T ss_pred ---------------------------CCCHHHHHHHHHhcCC----hHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 2233344444433111 111111222 568889999999988877654
No 77
>PRK13976 thymidylate kinase; Provisional
Probab=99.46 E-value=9.8e-12 Score=99.97 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=69.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-HHHHHHHHcC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV-VGIIDQAMKK 105 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~l~~~l~~ 105 (245)
++|+|.|..||||||+++.|++.+.- .++-+ + ...++..|+.+++++.....+.+... .-.+..+..+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999988742 22211 1 12356678888877764222322211 1111122111
Q ss_pred --------CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 106 --------PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 106 --------~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
+..+..+|.|.|..+. .....+...+ ....||++|+|++|++++.+|+..+
T Consensus 75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV--VDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHHHHHHHhccc
Confidence 1223446667654332 1222222222 1357999999999999999998644
No 78
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.45 E-value=7.6e-13 Score=99.98 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=77.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCch---HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
+|+|.|+|||||||+++.|++.++..+++.|.+.........+- ........ ...+...+...+. .+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~---~g 70 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR---NG 70 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH---TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH---cC
Confidence 58999999999999999999999999999988765432211110 00000000 1122233333332 23
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
..+|+|+..........+..++...+. +..+|+|++|++++.+|+..|..
T Consensus 71 ~~~vvd~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 71 NSVVVDNTNLSREERARLRELARKHGY-PVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp -EEEEESS--SHHHHHHHHHHHHHCTE-EEEEEEECHHHHHHHHHHHTTHC
T ss_pred CCceeccCcCCHHHHHHHHHHHHHcCC-eEEEEEEECCHHHHHHHHHhcCC
Confidence 468888776777777777777766653 45899999999999999999974
No 79
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.43 E-value=3.1e-12 Score=98.65 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=62.7
Q ss_pred CCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCCceEEcC--
Q 025970 40 PGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEKGFILDG-- 116 (245)
Q Consensus 40 ~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~~~iidg-- 116 (245)
|||||||+++.||+.+|++++++|+++.+.. |..+.+++.. |..-.......++...+... ..+|..|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG 71 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG 71 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence 7999999999999999999999999987743 3444444432 21111122333333333322 3444333
Q ss_pred CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 117 FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.+........+.+ ...+|||+++++.+.+|+..+.
T Consensus 72 ~~~~~~~~~~L~~--------~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 72 IVLKEENRELLKE--------NGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp GGGSHHHHHHHHH--------HSEEEEEE--HHHHHHHHHHHC
T ss_pred CcCcHHHHHHHHh--------CCEEEEEeCCHHHHHHHHhCCC
Confidence 3444444443331 2579999999999999998764
No 80
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.42 E-value=2.3e-12 Score=101.94 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=88.6
Q ss_pred EECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH-HHH-------Hc-CC
Q 025970 36 LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DQA-------MK-KP 106 (245)
Q Consensus 36 i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l-~~~-------l~-~~ 106 (245)
|.|++||||||+++.|++.+.-..+.. -+ .....+++.|..+++++.............+. ..+ +. .+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~-~~--~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV-II--TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE-EE--EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc-cc--cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999983322210 00 00023456777777777743333332221111 111 11 11
Q ss_pred CCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCC
Q 025970 107 SCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAP 174 (245)
Q Consensus 107 ~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~ 174 (245)
..+..+|.|.+.. .......+...+. +..||++|+|+++++++.+|+..|....
T Consensus 78 ~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~--~~~PDl~~~Ldv~pe~~~~R~~~r~~~~------------ 143 (186)
T PF02223_consen 78 KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIF--LPKPDLTFFLDVDPEEALKRIAKRGEKD------------ 143 (186)
T ss_dssp HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHH--TTE-SEEEEEECCHHHHHHHHHHTSSTT------------
T ss_pred cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhc--CCCCCEEEEEecCHHHHHHHHHcCCccc------------
Confidence 1234566665311 1222222222221 1289999999999999999999996300
Q ss_pred CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 025970 175 PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239 (245)
Q Consensus 175 p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i 239 (245)
+......... ..+++.. .+.+...+.+++||++.++++++++|
T Consensus 144 ----------------~~~~~~~~~~---~~~~~~y---~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 144 ----------------DEEEEDLEYL---RRVREAY---LELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp ----------------TTTTHHHHHH---HHHHHHH---HHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred ----------------hHHHHHHHHH---HHHHHHH---HHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 0111111222 2222222 22222346799999999999999876
No 81
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.42 E-value=5.4e-12 Score=96.50 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=65.6
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCceE
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFI 113 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 113 (245)
|+|+|+|||||||+++.|++.+|+.+++.|.+++..... ........ .| ...+.......+.......++|
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~~~~~~v 72 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLLTKENAV 72 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHhccCCcE
Confidence 789999999999999999999999999999887765321 22111111 11 1222222121222222223445
Q ss_pred EcCC---CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 114 LDGF---PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 114 idg~---p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+++. ........ .+ .....+|||++|++++.+|+..|.
T Consensus 73 i~~g~~~i~~~~~~~----~~----~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 73 IATGGGAVLREENRR----LL----LENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EECCCCccCcHHHHH----HH----HcCCeEEEEeCCHHHHHHHhccCC
Confidence 5432 12222211 21 124579999999999999998874
No 82
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.40 E-value=5.2e-12 Score=99.34 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
..++|+|.|+.|+||||++++|++++|..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3579999999999999999999999997654
No 83
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.40 E-value=2.3e-11 Score=96.79 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=64.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH--H--H---HHHHHHHHHcC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD--D--L---VVGIIDQAMKK 105 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~--~--~---~~~~l~~~l~~ 105 (245)
+|+|.|++||||||+++.|++.+++.++.-..- ......+ .+..++.+...... + . ..+.+...+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~---~~~~~~~---~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE---PDVEGNP---FLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc---ccCCCCC---CHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999887754422100 0000011 11111111000000 0 0 11111122221
Q ss_pred CCCCCceEEcCCCCCHHH---------------HHHH---HHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 106 PSCEKGFILDGFPRTVVQ---------------AEKL---DEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 106 ~~~~~~~iidg~p~~~~~---------------~~~l---~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...+..+|+|.++.+... ...+ ...+......|+++|||+++++++.+|+.+|.
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 223457888987654210 1111 11122223579999999999999999999875
No 84
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.39 E-value=2.7e-11 Score=100.24 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=67.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS 107 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~ 107 (245)
+|+|+|+|||||||+|+.|++.++ +.+++.| .++........ .....+ ......++...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D-~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD-LIRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH-HHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC--
Confidence 489999999999999999998873 3456654 34443211101 111111 11222333333332
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+..+|+|+..........+.......+ .+.++|||++|.+++.+|...|.
T Consensus 68 -~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 68 -KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred -CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhCC
Confidence 235888986544444444544444443 45689999999999999988773
No 85
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.36 E-value=1.7e-11 Score=97.08 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=89.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcC-----CchHHHHHHHHHcCCCCCHHHHH--------HH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK-----TPLGIKAKEAMDKGELVSDDLVV--------GI 98 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~--------~~ 98 (245)
.+++|+||+||||||+++.|+..++..++..+..+....... ...++.....++.+... ..|.. .-
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGIE 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcHH
Confidence 578999999999999999999887765554443322110000 01112222222222211 11100 01
Q ss_pred HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCC
Q 025970 99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH 178 (245)
Q Consensus 99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~ 178 (245)
+...+.. +..+|++|. ......+.+ .. ..+..+|+|++|.+++.+|+..|.
T Consensus 82 ~~~~l~~---g~~VI~~G~---~~~~~~~~~---~~-~~~~~vi~l~~s~e~l~~RL~~R~------------------- 132 (186)
T PRK10078 82 IDLWLHA---GFDVLVNGS---RAHLPQARA---RY-QSALLPVCLQVSPEILRQRLENRG------------------- 132 (186)
T ss_pred HHHHHhC---CCEEEEeCh---HHHHHHHHH---Hc-CCCEEEEEEeCCHHHHHHHHHHhC-------------------
Confidence 2223322 345777665 111122222 12 234578999999999999998763
Q ss_pred CCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 179 GFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..+.+.+..|+..+. +|.. ...++|+++.+++++.+.|.+.|.
T Consensus 133 --------------~~~~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~ 175 (186)
T PRK10078 133 --------------RENASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLH 175 (186)
T ss_pred --------------CCCHHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHh
Confidence 123455777774321 2222 245778888999999999988774
No 86
>PRK07261 topology modulation protein; Provisional
Probab=99.34 E-value=3.8e-12 Score=99.37 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=71.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+.|+|+|+|||||||+++.|++.+++++++.|.+.... + ....+.+.+...+...+.. ..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~----~~ 60 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK----HD 60 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC----CC
Confidence 47999999999999999999999999999987653210 0 0112233344444444432 35
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
||+||..........+. ..|.+|+|++|...++.|+..|..
T Consensus 61 wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 61 WIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred EEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 99999876543333222 358999999999999999998864
No 87
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.33 E-value=3.1e-11 Score=92.08 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=70.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCC-C
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDQAMKKP-S 107 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~l~~~l~~~-~ 107 (245)
+|+|.|+|||||||+++.|++.++..+++.|.+...... ..+..|...+ ..++..+........ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999887543110 0011111111 112222211111111 2
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.+..+|+|...........+..++ .+ .+..+|+|++|.+++.+|+..|.
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~--~~-~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGA--AN-PRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcC--CC-CCEEEEEEECCHHHHHHHHHhcc
Confidence 344678886544444444444332 22 34579999999999999999985
No 88
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.33 E-value=4.8e-11 Score=93.54 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=93.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH------H-HHHHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD------D-LVVGIIDQAM 103 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~------~-~~~~~l~~~l 103 (245)
+.+++|.|++||||||+++.|+..++..+++.+++... ..++. +..|....+ . .+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888888765211 00111 111211111 1 1111111111
Q ss_pred cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCC
Q 025970 104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV 183 (245)
Q Consensus 104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~ 183 (245)
. ....|+|+..+. .......+. +. ..+-.+|+|++|++++.+|+.+|..+
T Consensus 73 -~-~~~~g~iv~s~~-~~~~R~~~r----~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~---------------------- 122 (176)
T PRK09825 73 -K-KNETGFIVCSSL-KKQYRDILR----KS-SPNVHFLWLDGDYETILARMQRRAGH---------------------- 122 (176)
T ss_pred -h-cCCCEEEEEEec-CHHHHHHHH----hh-CCCEEEEEEeCCHHHHHHHHhcccCC----------------------
Confidence 1 124577876553 333333222 22 33458999999999999999999521
Q ss_pred CCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
....+.+..++..+... -.....++.||++.+++++...+...+.
T Consensus 123 ---------~~~~~vl~~Q~~~~e~~-------~~~e~~~~~~d~~~~~~~~~~~~~~~~~ 167 (176)
T PRK09825 123 ---------FMPPDLLQSQFDALERP-------CADEHDIARIDVNHDIENVTEQCRQAVQ 167 (176)
T ss_pred ---------CCCHHHHHHHHHHcCCC-------CCCcCCeEEEECCCCHHHHHHHHHHHHH
Confidence 12445555554433211 1112348999999999888877776654
No 89
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.32 E-value=1.2e-10 Score=92.74 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchH-HHHHHHHHcCCCCC----HHHHH--------
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLG-IKAKEAMDKGELVS----DDLVV-------- 96 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~-~~i~~~l~~~~~~~----~~~~~-------- 96 (245)
.+++|+|.|+|||||||+|+.|++.+|+.++..++++++.+......+ ......+..++.++ +.++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467999999999999999999999999999988899998877433221 11111111111111 11111
Q ss_pred --HHHHHHHc-CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEec-CHHHHHHHHhCCc
Q 025970 97 --GIIDQAMK-KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI-DDSILEERITGRW 159 (245)
Q Consensus 97 --~~l~~~l~-~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~-~~e~~~~R~~~r~ 159 (245)
..+..... ....+..+|+|+............ .. . ..++++.+ +++++.+|+..|.
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~----~~--~-v~~i~l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR----TN--N-IRAFYLYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH----hc--C-eEEEEEEeCCHHHHHHHHHHHh
Confidence 11111111 112345789998655554432211 11 1 24566655 6778889999986
No 90
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.31 E-value=6.6e-11 Score=95.17 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=91.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcce-eehHHHHHH---HHHcCCch----HHHHHHHHHcCCCCCH------
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH-LATGDMLRS---AVAAKTPL----GIKAKEAMDKGELVSD------ 92 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~-i~~~~li~~---~~~~~~~~----~~~i~~~l~~~~~~~~------ 92 (245)
.+.++.+|+|+||+||||||+++.|.+.. ..+ +.....-+. .-..+..+ ...+...+..|..+..
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 56788999999999999999999998642 211 111000000 00000000 0122222323322211
Q ss_pred --HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC--HHHHHHHHhCCcccCCCCccc
Q 025970 93 --DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID--DSILEERITGRWIHPASGRSY 168 (245)
Q Consensus 93 --~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~--~e~~~~R~~~r~~~~~~~~~y 168 (245)
.+....+...+.. ++.+|++.-+ .....+.. ..|+.++++.+| .+++.+|+..|.
T Consensus 88 ~YGt~~~~i~~~~~~---g~~vi~~~~~---~g~~~l~~------~~pd~~~if~~pps~e~l~~Rl~~R~--------- 146 (206)
T PRK14738 88 YYGVPKAPVRQALAS---GRDVIVKVDV---QGAASIKR------LVPEAVFIFLAPPSMDELTRRLELRR--------- 146 (206)
T ss_pred eecCCHHHHHHHHHc---CCcEEEEcCH---HHHHHHHH------hCCCeEEEEEeCCCHHHHHHHHHHcC---------
Confidence 0011122222221 2346676533 22222222 246777777765 568899999874
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+++.+.+..|+..+........ ...++.||++.+++++++.|.+.|.
T Consensus 147 ------------------------~~~~~~~~~Rl~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~ 193 (206)
T PRK14738 147 ------------------------TESPEELERRLATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIIS 193 (206)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHH
Confidence 3345678888877655443211 1257889999999999999998774
No 91
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.30 E-value=7.9e-12 Score=94.74 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=64.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF 112 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 112 (245)
+|+|.|+|||||||+|+.|++.+|+++++.+.+..... ........ . ...+...+...+........|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~-~-----~~~i~~~l~~~~~~~~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVA-A-----IPEVRKALDERQRELAKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhc-c-----cHhHHHHHHHHHHHHhhCCCE
Confidence 48999999999999999999999999999974422211 11111000 0 011122222222222223579
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
|+||...... + ...++.+|+|++|++.+.+|+..|
T Consensus 69 Vidg~~~~~~--------~---~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 69 VLEGRDIGTV--------V---FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EEEeeeeeeE--------E---cCCCCEEEEEECCHHHHHHHHHHH
Confidence 9998643210 0 134689999999999999999885
No 92
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.30 E-value=6.2e-11 Score=106.59 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=65.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
|.|+|+|+|||||||+++.|++.+|++++++|.++.+. .|..+.+++.. |.......-.+.+.+... ..
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~----~~ 70 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVE----RD 70 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhh----cC
Confidence 57999999999999999999999999999999998763 22222333322 221111222222222211 11
Q ss_pred ceEE-cCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 111 GFIL-DGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 111 ~~ii-dg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
..|+ .|. +........+. ...+|||++|++++.+|+..+
T Consensus 71 ~~Vis~Gggvv~~~~~r~~l~---------~~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 71 NVVVATGGGVVIDPENRELLK---------KEKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred CEEEECCCccccChHHHHHHh---------cCeEEEEECCHHHHHHHhccC
Confidence 2333 332 22223333221 135899999999999999765
No 93
>PRK06547 hypothetical protein; Provisional
Probab=99.30 E-value=1.7e-11 Score=95.63 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=72.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC--CHHHHHHHHHHHHc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV--SDDLVVGIIDQAMK 104 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~l~~~l~ 104 (245)
...++++|+|.|++||||||+++.|++.++..+++.|++..................+..|... +-++...... .+.
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~-~~~ 89 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPG-DWV 89 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCC-CcE
Confidence 4677889999999999999999999999999999998876431110001111112222233211 1000000000 000
Q ss_pred CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.......+|++|....... +...+.+ ....+.|||++|.+++.+|+..|.
T Consensus 90 ~l~~~~vVIvEG~~al~~~---~r~~~d~--~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAA---NVALASL--LGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred EeCCCCeEEEEehhhccHH---HHHHhcc--CCCEEEEEEECCHHHHHHHHHhcC
Confidence 1112345778886333222 2222211 112389999999999999999984
No 94
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.30 E-value=1.1e-11 Score=97.91 Aligned_cols=163 Identities=23% Similarity=0.237 Sum_probs=96.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC--cc--eeehHHHHHHHHHcCCchH----HHHHHHHHcCCCCCHH--------H
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC--LC--HLATGDMLRSAVAAKTPLG----IKAKEAMDKGELVSDD--------L 94 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~--~~--~i~~~~li~~~~~~~~~~~----~~i~~~l~~~~~~~~~--------~ 94 (245)
+..|+|+||+||||+|+++.|.+.+. +. +..+..-.+.....+..+. ..+...++.|..++.. +
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 45789999999999999999998862 22 2222111111101112222 4555666666554321 2
Q ss_pred HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEe-cCHHHHHHHHhCCcccCCCCccccccCC
Q 025970 95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFA-IDDSILEERITGRWIHPASGRSYHTKFA 173 (245)
Q Consensus 95 ~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~-~~~e~~~~R~~~r~~~~~~~~~y~~~~~ 173 (245)
....+...+.. ++.+|+|..|....+... ....| ++||+. .+.+++.+|+..|.
T Consensus 82 ~~~~i~~~~~~---~~~~ild~~~~~~~~l~~-------~~~~~-~vIfi~~~s~~~l~~rl~~R~-------------- 136 (184)
T smart00072 82 SKETIRQVAEQ---GKHCLLDIDPQGVKQLRK-------AQLYP-IVIFIAPPSSEELERRLRGRG-------------- 136 (184)
T ss_pred CHHHHHHHHHc---CCeEEEEECHHHHHHHHH-------hCCCc-EEEEEeCcCHHHHHHHHHhcC--------------
Confidence 22234444432 467899988766655442 12333 789998 56677999998763
Q ss_pred CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 174 PPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 174 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+++.+.+.+|+........ .+... . ..|.++ +.++.+..+.++|.
T Consensus 137 -------------------~~~~~~i~~rl~~a~~~~~----~~~~f-d-~~I~n~-~l~~~~~~l~~~i~ 181 (184)
T smart00072 137 -------------------TETAERIQKRLAAAQKEAQ----EYHLF-D-YVIVND-DLEDAYEELKEILE 181 (184)
T ss_pred -------------------CCCHHHHHHHHHHHHHHHh----hhccC-C-EEEECc-CHHHHHHHHHHHHH
Confidence 5567788888886544332 22111 2 334433 78999999988875
No 95
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.28 E-value=2.2e-10 Score=89.80 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=66.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCCchHHHHHHHHH-cC--CCCCHH---HHHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKTPLGIKAKEAMD-KG--ELVSDD---LVVGIIDQA 102 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~-~~--~~~~~~---~~~~~l~~~ 102 (245)
+.+|+|.|+|||||||+++.|++.++.. +++.|++.......... . ...+. ++ ...+.. .....+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-A---EGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-c---ccccccCccCCcccchHHHHHHHHHHHH
Confidence 4589999999999999999999998654 45776665432110000 0 00000 00 111111 122222222
Q ss_pred HcC-CCCCCceEEcCCCC-CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 103 MKK-PSCEKGFILDGFPR-TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 103 l~~-~~~~~~~iidg~p~-~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+.. ...+..+|+|.... .......+..+ . ..+-..|+++||.+++.+|...|.
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~-~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSF---V-GLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHh---c-CCCEEEEEEECCHHHHHHHHHhcC
Confidence 221 22346788886422 22222333322 1 234589999999999999999874
No 96
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=3.7e-10 Score=86.70 Aligned_cols=177 Identities=17% Similarity=0.116 Sum_probs=106.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH-HHHcC--
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-QAMKK-- 105 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~-- 105 (245)
.++.+|++.|..+|||||+|..|.+.+.-.+-. ..+-+..+..+..|+.|..++++...+|+..+.-+.. +++..
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~--~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDP--AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccCh--HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 577899999999999999999999888322221 2233444567889999999999888777776554332 11111
Q ss_pred -----CCCCCceEEcCCCCCHHH---HHHHHH-HHHh---cCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC
Q 025970 106 -----PSCEKGFILDGFPRTVVQ---AEKLDE-MLEK---QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA 173 (245)
Q Consensus 106 -----~~~~~~~iidg~p~~~~~---~~~l~~-~~~~---~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~ 173 (245)
+..+..+|+|.|-..-.. +..+.. ++.. --++||+++||++|++.+.+| .+...
T Consensus 81 ~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~------------- 146 (208)
T KOG3327|consen 81 LIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGE------------- 146 (208)
T ss_pred HHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCcch-------------
Confidence 112334677765332211 111110 1111 126999999999999995554 33320
Q ss_pred CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 174 PPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 174 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
........+.+...+++... -.....++++|++.+.+++++.|..+++
T Consensus 147 ------------------Erye~v~fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e 194 (208)
T KOG3327|consen 147 ------------------ERYETVAFQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVE 194 (208)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHH
Confidence 11223334444333332222 0122368999999999999999976553
No 97
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.22 E-value=6.8e-10 Score=87.70 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=37.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV 70 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~ 70 (245)
.++|.|-||.||||||+|+.||++||+.+++++.+.|...
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a 43 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA 43 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence 3799999999999999999999999999999999988743
No 98
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.21 E-value=3.6e-10 Score=101.47 Aligned_cols=41 Identities=32% Similarity=0.502 Sum_probs=38.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
.++++|+|.|++||||||+++.|++++|+.+++.+.+.|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 37789999999999999999999999999999999988874
No 99
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.21 E-value=7.4e-10 Score=87.00 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=85.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcc----eeehHHHHHHHHHcCCch----HHHHHHHHHcCCCC--------CHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLC----HLATGDMLRSAVAAKTPL----GIKAKEAMDKGELV--------SDDLV 95 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~----~i~~~~li~~~~~~~~~~----~~~i~~~l~~~~~~--------~~~~~ 95 (245)
.+|+|+|++||||||+++.|+..++.. ++.. .+-+.....+..+ ...+......+... .....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRR-VITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeE-EcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 478999999999999999999887532 2110 0000000001110 01111111122110 00011
Q ss_pred HHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCC
Q 025970 96 VGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPP 175 (245)
Q Consensus 96 ~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p 175 (245)
. .+...+. .+..+|+++.. .....+.+. .....+|+|++|.+++.+|+..|.
T Consensus 81 ~-~i~~~~~---~g~~vv~~g~~---~~~~~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~R~---------------- 132 (179)
T TIGR02322 81 A-EIDQWLE---AGDVVVVNGSR---AVLPEARQR-----YPNLLVVNITASPDVLAQRLAARG---------------- 132 (179)
T ss_pred H-HHHHHHh---cCCEEEEECCH---HHHHHHHHH-----CCCcEEEEEECCHHHHHHHHHHcC----------------
Confidence 1 1222222 23457788752 112222211 123479999999999999999874
Q ss_pred CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 176 KVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..+.+.+..++..+..... ....++.++++.++++++..|.+.+.
T Consensus 133 -----------------~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 133 -----------------RESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred -----------------CCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 1124566666643221110 22246678888999999999998875
No 100
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.20 E-value=3e-10 Score=91.50 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLR 67 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~ 67 (245)
.++.+|.|.|++||||||+++.|++.++ +.+++.|+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 5788999999999999999999999983 45677776543
No 101
>PRK06696 uridine kinase; Validated
Probab=99.19 E-value=1.5e-10 Score=94.22 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhcc-CCCCCcEEEEECCCCCChhHHHHHHHhHh---Ccc--eeehHHHHH
Q 025970 14 VDMMTELLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CLC--HLATGDMLR 67 (245)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~--~i~~~~li~ 67 (245)
.+++.+++..+.. .+.+|.+|+|.|++||||||+|+.|++.+ |.. ++++|++..
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 4567788877764 55678999999999999999999999999 544 445777653
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.16 E-value=1.9e-11 Score=89.69 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=31.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDML 66 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li 66 (245)
+|+|.|+|||||||+|+.|++.+|++++++|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999953
No 103
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.16 E-value=9.6e-10 Score=86.15 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=62.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCC-chHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKT-PLGIKAKEAMDKGELVSDDLVVGIIDQA 102 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~l~~~ 102 (245)
.+|.+|+|.|+|||||||+++.|++.++ ..+++.+.+ ++.+.... ....... .......+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~~~~~~~~~~----------~~~~~~~l~~~ 73 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHYGYDKQSRIE----------MALKRAKLAKF 73 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCCCCCHHHHHH----------HHHHHHHHHHH
Confidence 4678999999999999999999999885 567766543 43222100 0000000 00111112222
Q ss_pred HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
+. ..+..+|+|+... ......+... . ..+.++|+|++|++++.+|+..
T Consensus 74 l~--~~g~~VI~~~~~~-~~~~~~~~~~---~-~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 74 LA--DQGMIVIVTTISM-FDEIYAYNRK---H-LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HH--hCCCEEEEEeCCc-HHHHHHHHHh---h-cCCeEEEEEeCCHHHHHHhchh
Confidence 22 1234577776532 2111111111 1 3345799999999999999753
No 104
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.15 E-value=5.5e-10 Score=86.49 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=85.1
Q ss_pred ECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH---HHHHHHHHHHcC--CCCCCc
Q 025970 37 IGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD---LVVGIIDQAMKK--PSCEKG 111 (245)
Q Consensus 37 ~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~l~~~l~~--~~~~~~ 111 (245)
+|++||||||+++.|++.+|..+++.|.+..... +.. ...|....+. .....+...... ......
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 5999999999999999999999998865421100 000 0011111110 011111111100 112234
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
+|+..+. ...+...+. .. ..+-.+|+|+||++++.+|+..|..+
T Consensus 71 viv~s~~-~~~~r~~~~----~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~------------------------------ 114 (163)
T PRK11545 71 LIVCSAL-KKHYRDLLR----EG-NPNLSFIYLKGDFDVIESRLKARKGH------------------------------ 114 (163)
T ss_pred EEEEecc-hHHHHHHHH----cc-CCCEEEEEEECCHHHHHHHHHhccCC------------------------------
Confidence 5554332 222332222 23 33458999999999999999999521
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
. .+.+.+..++..+.... .....++.||++.+++++...+...+.
T Consensus 115 ~-a~~~vl~~Q~~~~ep~~-------~~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 115 F-FKTQMLVTQFETLQEPG-------ADETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred C-CCHHHHHHHHHHcCCCC-------CCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 13445555444332111 111247889999999999988887764
No 105
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.14 E-value=2e-09 Score=86.40 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=88.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc---CCc----hHHHHHHHHHcCCCCC-----HHH--
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA---KTP----LGIKAKEAMDKGELVS-----DDL-- 94 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~---~~~----~~~~i~~~l~~~~~~~-----~~~-- 94 (245)
.++.+|+|.|++||||||+++.|+..++..++......++.... +.. -...+...+..+..+. ...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 35679999999999999999999998763333222221110000 000 0122222222222110 000
Q ss_pred -HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC
Q 025970 95 -VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA 173 (245)
Q Consensus 95 -~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~ 173 (245)
....+...+.. +..+|+|.-+.. ...+... . ..+-.++++.++.+++.+|+..|.
T Consensus 83 ~~~~~i~~~l~~---g~~vi~dl~~~g---~~~l~~~---~-~~~~~I~i~~~s~~~l~~Rl~~R~-------------- 138 (205)
T PRK00300 83 TPRSPVEEALAA---GKDVLLEIDWQG---ARQVKKK---M-PDAVSIFILPPSLEELERRLRGRG-------------- 138 (205)
T ss_pred CcHHHHHHHHHc---CCeEEEeCCHHH---HHHHHHh---C-CCcEEEEEECcCHHHHHHHHHhcC--------------
Confidence 11122222221 334566654322 2222221 2 223334555677899999999873
Q ss_pred CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 174 PPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 174 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+++.+.+++|+..+...... +...+ ++.+ +.+++++...|.+++.
T Consensus 139 -------------------~~~~~~i~~rl~~~~~~~~~----~~~~d-~vi~--n~~~e~~~~~l~~il~ 183 (205)
T PRK00300 139 -------------------TDSEEVIARRLAKAREEIAH----ASEYD-YVIV--NDDLDTALEELKAIIR 183 (205)
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHh----HHhCC-EEEE--CCCHHHHHHHHHHHHH
Confidence 45678889999888765533 22223 3344 3489999999988775
No 106
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.13 E-value=1.3e-09 Score=99.68 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=71.0
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc------ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL------CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~------~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~ 92 (245)
++.+-|.....++.+|+|+|.|||||||+++.|++.++. .+++.|.+ ++.+..+..+...-+ .
T Consensus 380 iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er----------~ 448 (568)
T PRK05537 380 ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDR----------D 448 (568)
T ss_pred HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHH----------H
Confidence 444444445567889999999999999999999999985 77877544 543332111111000 0
Q ss_pred HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970 93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT 156 (245)
Q Consensus 93 ~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~ 156 (245)
.+...+....-.-...+.++|++..............++...+ .-++|+|++|.+++.+|..
T Consensus 449 ~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 449 LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhcc
Confidence 1111111111111123456677753222223344444554433 1258999999999999963
No 107
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.13 E-value=7.1e-10 Score=85.76 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=90.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCch--------HHHHHHHHHcCCCCCHH--------
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPL--------GIKAKEAMDKGELVSDD-------- 93 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~--------~~~i~~~l~~~~~~~~~-------- 93 (245)
++.+|+|+||+|+||||++++|-+.. -..+|++...|.. .++..- .+.+.+++..+..+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 67899999999999999999999998 4445554443321 111111 23444444444332110
Q ss_pred HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCH-HHHHHHHhCCcccCCCCccccccC
Q 025970 94 LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD-SILEERITGRWIHPASGRSYHTKF 172 (245)
Q Consensus 94 ~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~-e~~~~R~~~r~~~~~~~~~y~~~~ 172 (245)
....-+...+. .+..+|+|-- +.-+..+... ....+.||+.+|. +++.+|+.+|
T Consensus 81 T~~~~ve~~~~---~G~~vildId---~qGa~qvk~~-----~p~~v~IFi~pPs~eeL~~RL~~R-------------- 135 (191)
T COG0194 81 TSREPVEQALA---EGKDVILDID---VQGALQVKKK-----MPNAVSIFILPPSLEELERRLKGR-------------- 135 (191)
T ss_pred CcHHHHHHHHh---cCCeEEEEEe---hHHHHHHHHh-----CCCeEEEEEcCCCHHHHHHHHHcc--------------
Confidence 11111122221 1234555421 1222222111 2234566666544 6777777776
Q ss_pred CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
..++.+.+.+|+...+.......+| .++++| .+.+..++.+..++
T Consensus 136 -------------------gtds~e~I~~Rl~~a~~Ei~~~~~f-----dyvivN--dd~e~a~~~l~~ii 180 (191)
T COG0194 136 -------------------GTDSEEVIARRLENAKKEISHADEF-----DYVIVN--DDLEKALEELKSII 180 (191)
T ss_pred -------------------CCCCHHHHHHHHHHHHHHHHHHHhC-----CEEEEC--ccHHHHHHHHHHHH
Confidence 4778899999999988877655542 355554 66777787777765
No 108
>PRK07667 uridine kinase; Provisional
Probab=99.12 E-value=5e-10 Score=89.14 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHH
Q 025970 18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRS 68 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~ 68 (245)
++++..+......+.+|.|.|++||||||+++.|++.++ ..+++.|++...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 345555555445568999999999999999999999873 558888887654
No 109
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=3.2e-09 Score=83.20 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=59.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh---CcceeehHH-HHHHHHHcCCch---HHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGD-MLRSAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDQAMK 104 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~-li~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 104 (245)
+.|+++|.|||||||+|+.|++.+ ++.+++... ..+-... +..+ .+..++.+ ......++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~-DEslpi~ke~yres~-------~ks~~rlldSalk 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILW-DESLPILKEVYRESF-------LKSVERLLDSALK 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheec-ccccchHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 478999999999999999999988 333332221 1111000 1111 11111111 1222335555544
Q ss_pred CCCCCCceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 105 KPSCEKGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 105 ~~~~~~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
+.-+|+|.. ....... |.....+. ..+-.+||+.+|.+++++|=..|
T Consensus 74 ----n~~VIvDdtNYyksmRrq--L~ceak~~-~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 ----NYLVIVDDTNYYKSMRRQ--LACEAKER-KTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred ----ceEEEEecccHHHHHHHH--HHHHHHhc-CCceEEEEEccCHHHHHHhhccC
Confidence 335666653 2222222 22122223 34568999999999999986544
No 110
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.09 E-value=4.8e-09 Score=84.91 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=35.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
+++|.|.|++||||||+++.|++++++.+++.+.+.+..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 368999999999999999999999999999999887764
No 111
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.09 E-value=8.1e-09 Score=78.28 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=68.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
+++++++|.||+||||+++.+.+.+ ++..++.++++-+......- -..++.+. -+|.+....+...+.......
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999 88889999988764332110 01112222 233333333322222221111
Q ss_pred Cc-eEEcCCCCCHH---HHHHHH-HHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 110 KG-FILDGFPRTVV---QAEKLD-EMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 110 ~~-~iidg~p~~~~---~~~~l~-~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
.. .|+|++..-.. +..-+- |.+.. ..||.++.|.+++++++.|=.+
T Consensus 79 ~~~iivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 79 ALEIIVDTHATIKTPAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred hhceEEeccceecCCCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhc
Confidence 11 66765422110 000000 11111 6899999999999988877443
No 112
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.08 E-value=1.4e-09 Score=98.01 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=80.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS 107 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~ 107 (245)
+..+.+|++.|+|||||||+++.++...|+.+++.|.+-. .......+...+ .
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L---~ 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERAL---D 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHH---h
Confidence 3567899999999999999999999999999999986511 011222233333 2
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
.+..+|+|.--....++..+.++...++.. ..++++++|.+++.+|...|..
T Consensus 419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~-v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 419 QGKRCAIDNTNPDAASRAKFLQCARAAGIP-CRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCHHHHHHHHHhhcc
Confidence 356799998877777888888777777664 4789999999999999998853
No 113
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.08 E-value=3.6e-09 Score=86.17 Aligned_cols=39 Identities=33% Similarity=0.557 Sum_probs=36.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
+++|+|.|++||||||+++.|++++|+.+++.+.++|..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 479999999999999999999999999999999987763
No 114
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.07 E-value=2.3e-09 Score=84.72 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=91.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCc--------hHHHHHHHHHcCCCCCH--------
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTP--------LGIKAKEAMDKGELVSD-------- 92 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~--------~~~~i~~~l~~~~~~~~-------- 92 (245)
.+|++|+|+||+||||||+++.|.+.+.-.+++....-|.. .++.. --..+...+..|..+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 46789999999999999999999988743333332222210 00100 01233344444433221
Q ss_pred HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC-HHHHHHHHhCCcccCCCCcccccc
Q 025970 93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID-DSILEERITGRWIHPASGRSYHTK 171 (245)
Q Consensus 93 ~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~-~e~~~~R~~~r~~~~~~~~~y~~~ 171 (245)
.+-...+...+.. ++.+|+|--+....+ +... . ..+-++||+..| .+++.+|+..|.
T Consensus 81 Gt~~~~i~~~~~~---g~~~i~d~~~~g~~~---l~~~---~-~~~~~~Ifi~pps~e~l~~RL~~R~------------ 138 (186)
T PRK14737 81 GTPKAFIEDAFKE---GRSAIMDIDVQGAKI---IKEK---F-PERIVTIFIEPPSEEEWEERLIHRG------------ 138 (186)
T ss_pred cCcHHHHHHHHHc---CCeEEEEcCHHHHHH---HHHh---C-CCCeEEEEEECCCHHHHHHHHHhcC------------
Confidence 1122222333322 345677754333333 2221 1 111268888874 688999998774
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 172 FAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 172 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..+.+.++.|+........ +.....+ +|+++ ++++....|.++|.
T Consensus 139 ---------------------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~-vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 139 ---------------------TDSEESIEKRIENGIIELD-----EANEFDY-KIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHh-----hhccCCE-EEECc-CHHHHHHHHHHHHh
Confidence 4466788888876433221 1111123 34444 89999999998875
No 115
>COG0645 Predicted kinase [General function prediction only]
Probab=99.07 E-value=7.7e-09 Score=78.82 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=78.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD---DLVVGIIDQAMKKPSC 108 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~l~~~l~~~~~ 108 (245)
.++++.|.||+||||+++.|++.+|..+|..|.+ ++.+.. -+.... ...|-..+. .....+......-+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g-~p~~~r----~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFG-VPEETR----GPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcC-Cccccc----CCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999655 454443 000000 001111111 1122222222222334
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
+..+|+|+..-...+...........+.. -..|.++++.+++..|+..|..
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~-~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVA-FVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCc-eEEEEcCCcHHHHHHHHHHhCC
Confidence 56799998766666666666555555443 4789999999999999999973
No 116
>PRK12338 hypothetical protein; Provisional
Probab=99.06 E-value=1.4e-08 Score=85.96 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=37.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA 72 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~ 72 (245)
+|.+|+|.|+|||||||+|+.||+.+|+.++..++.+++.+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 5789999999999999999999999999988667888886553
No 117
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.06 E-value=2.5e-08 Score=83.84 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK-PSC 108 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~-~~~ 108 (245)
...+|+|+|++||||||+++.|. ..|+..++.-. ..++..++...... ...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~---------------------------~~L~~~l~~~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP---------------------------PSLLPKLVELLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC---------------------------HHHHHHHHHHHHhcCCCC
Confidence 34589999999999999999996 45877664311 11222222211111 111
Q ss_pred CCceEEcCCCCCH-HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 109 EKGFILDGFPRTV-VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 109 ~~~~iidg~p~~~-~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
.-.+++|-..... .........+...+. ...+|||+++++++.+|+..+
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~-~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERGI-DVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHhhc
Confidence 2245566432221 122222223334433 346899999999999999753
No 118
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.04 E-value=1.7e-09 Score=87.00 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=34.1
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDML 66 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li 66 (245)
|.++++.+|+|.|++||||||+++.|+..++ ..+++.|+..
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 4678889999999999999999999998875 4566766543
No 119
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.02 E-value=4.5e-09 Score=82.26 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDM 65 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~l 65 (245)
++.+|+|.|+|||||||+++.|+..+. +.+++.|.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 567999999999999999999999872 567777655
No 120
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.99 E-value=1.4e-08 Score=80.11 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM 103 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l 103 (245)
.++.+|+|.|++||||||+++.|+..+ | ..+++.+.+ ++.+..+..+...-. ...+..+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~-r~~l~~~~~~~~~~~----------~~~~~~~~~~~~ 84 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV-RHGLNKDLGFSEEDR----------KENIRRIGEVAK 84 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH-HhhhccccCCCHHHH----------HHHHHHHHHHHH
Confidence 567899999999999999999999887 2 456666543 332221111100000 011111111111
Q ss_pred cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970 104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154 (245)
Q Consensus 104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R 154 (245)
.....+..+|+|.......+...+...... .+-.+|+|++|.+++.+|
T Consensus 85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~---~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 85 LFVRNGIIVITSFISPYRADRQMVRELIEK---GEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHHhCcC---CCeEEEEEeCCHHHHHHh
Confidence 112234567777654444454444443221 244789999999999998
No 121
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.98 E-value=3.4e-08 Score=92.52 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=38.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
.++.++|.|.||+||||||+++.|++++|+.+++++.+.|..
T Consensus 439 ~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 439 ADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred ccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 345679999999999999999999999999999999998875
No 122
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.97 E-value=4.4e-09 Score=77.57 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=55.0
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCCCC
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---QAMKKPSCEK 110 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~---~~l~~~~~~~ 110 (245)
|+|.|+|||||||+++.|++.++..+.+ ............-.................++. ..........
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRD------IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHH------HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHH------HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 7899999999999999999998222211 111111100000000011122222332222222 2211112345
Q ss_pred ceEEcCCCCCHHHHHHHHHHHHhcCCCccEE-EEEecCHHHHHHHHhCCc
Q 025970 111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKV-LNFAIDDSILEERITGRW 159 (245)
Q Consensus 111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~v-i~L~~~~e~~~~R~~~r~ 159 (245)
.+|+|+........ ...... |+|+||++++.+|+..|.
T Consensus 75 ~~iid~~~~~~~~~-----------~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 75 NIIIDGILSNLELE-----------RLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp CEEEEESSEEECET-----------TEEEESSEEEE--HHHHHHHHHCTT
T ss_pred cEEEecccchhccc-----------ccceeeEEEEECCHHHHHHHHHhCC
Confidence 67888874332110 112223 999999999999999986
No 123
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.97 E-value=9.9e-09 Score=82.02 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=62.4
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ 101 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~ 101 (245)
-+.+|.+|+|+|++||||||+++.|+..+ +..+++.|.+- +.+.....+. ... ....+..+...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~--------~~~--~~~~~~~l~~~ 88 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS--------DAD--RKENIRRVGEV 88 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC--------ccc--HHHHHHHHHHH
Confidence 44678899999999999999999999876 35666665543 2211100000 000 01222222111
Q ss_pred HHcCCCCCCceEEcCCCC-CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970 102 AMKKPSCEKGFILDGFPR-TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~-~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R 154 (245)
. .........|+..+.. .......+..++... .-++|||++|.+++.+|
T Consensus 89 a-~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~---~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 89 A-KLMVDAGLVVLTAFISPHRAERQMVRERLGEG---EFIEVFVDTPLAICEAR 138 (198)
T ss_pred H-HHHhhCCCEEEEEeCCCCHHHHHHHHHHcccC---CEEEEEEcCCHHHHHhc
Confidence 1 1111122344555544 335555555554322 22479999999999999
No 124
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.96 E-value=3.6e-09 Score=83.07 Aligned_cols=164 Identities=17% Similarity=0.190 Sum_probs=87.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH--------HHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA---KTP----LGIKAKEAMDKGELVSD--------DLV 95 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~---~~~----~~~~i~~~l~~~~~~~~--------~~~ 95 (245)
+.+|+|.||+||||||+++.|+..++..++......++.... +.. -...+...+..+..+.. ...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 358999999999999999999987755544432222211000 000 01122222233322211 011
Q ss_pred HHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCC
Q 025970 96 VGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPP 175 (245)
Q Consensus 96 ~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p 175 (245)
...+...+.. +..+|+|.- ......+... . ..+..++++..+.+.+.+|+..|.
T Consensus 81 ~~~i~~~~~~---g~~vi~d~~---~~~~~~~~~~---~-~~~~~i~~~~~~~e~~~~Rl~~r~---------------- 134 (180)
T TIGR03263 81 KSPVEEALAA---GKDVLLEID---VQGARQVKKK---F-PDAVSIFILPPSLEELERRLRKRG---------------- 134 (180)
T ss_pred HHHHHHHHHC---CCeEEEECC---HHHHHHHHHh---C-CCcEEEEEECCCHHHHHHHHHHcC----------------
Confidence 2223333322 345777743 2222222222 1 234355555777899999998763
Q ss_pred CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 176 KVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+++.+.+++|+..+...... .....++.++ .+.+++...|.+.+.
T Consensus 135 -----------------~~~~~~i~~rl~~~~~~~~~-----~~~~d~~i~n--~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 135 -----------------TDSEEVIERRLAKAKKEIAH-----ADEFDYVIVN--DDLEKAVEELKSIIL 179 (180)
T ss_pred -----------------CCCHHHHHHHHHHHHHHHhc-----cccCcEEEEC--CCHHHHHHHHHHHHh
Confidence 44567888888776543221 1112344444 378999999988764
No 125
>PHA03132 thymidine kinase; Provisional
Probab=98.95 E-value=1.1e-08 Score=92.58 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCC-HHHHH----------
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVS-DDLVV---------- 96 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~-~~~~~---------- 96 (245)
+.++|+|.|+.||||||+++.|++.+|..++.+.+=+..+..-.+..+..+.+.+.++. .+. ...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 37899999999999999999999988554443311110000001234566666554332 111 11111
Q ss_pred HHHHHHHcC-----------CCCCCceEEcCCCCCHHH-------------HHHHHHHHHhcC-CCccEEEEEecCHHHH
Q 025970 97 GIIDQAMKK-----------PSCEKGFILDGFPRTVVQ-------------AEKLDEMLEKQG-TKIDKVLNFAIDDSIL 151 (245)
Q Consensus 97 ~~l~~~l~~-----------~~~~~~~iidg~p~~~~~-------------~~~l~~~~~~~~-~~~~~vi~L~~~~e~~ 151 (245)
..+..+... ...+..+|.|.++..... ...+..++.... ..||++|||+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 001111111 122345677877644321 011222322221 3589999999999999
Q ss_pred HHHHhCCc
Q 025970 152 EERITGRW 159 (245)
Q Consensus 152 ~~R~~~r~ 159 (245)
++|+.+|.
T Consensus 416 lkRIkkRg 423 (580)
T PHA03132 416 LRRVKKRG 423 (580)
T ss_pred HHHHHhcC
Confidence 99999985
No 126
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.91 E-value=1.6e-07 Score=76.71 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=29.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
...++|++.|+.|||||++|+.||+++|+.++-
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP 101 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFP 101 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccc
Confidence 346799999999999999999999999987764
No 127
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.91 E-value=5.8e-09 Score=81.16 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=66.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHcC-C---c---------hHHHHHHHHHcCCCCCHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAAK-T---P---------LGIKAKEAMDKGELVSDDLVV 96 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~~-~---~---------~~~~i~~~l~~~~~~~~~~~~ 96 (245)
.+|+|.|++-|||||+++.|++.+. +.+++.|.++....... . . .+... ..+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~ 69 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLF------------RRLY 69 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHH------------HHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHH------------HHHH
Confidence 5899999999999999999999995 45788887765422110 0 0 00111 1122
Q ss_pred HHHHHHHcC-CCCCCceEEcCCCCCHHH-HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 97 GIIDQAMKK-PSCEKGFILDGFPRTVVQ-AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 97 ~~l~~~l~~-~~~~~~~iidg~p~~~~~-~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
..+...+.. ...+..+|+|........ ...+..++. ..+-+.|-+.||.+++.+|-..|.
T Consensus 70 ~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~---~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 70 AAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA---GLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT---TS-EEEEEEE--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC---CCceEEEEEECCHHHHHHHHHhcC
Confidence 222222222 224567999987666554 444545553 345689999999999999988875
No 128
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.90 E-value=1.2e-08 Score=77.84 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH--HHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--IDQA 102 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--l~~~ 102 (245)
+|.+|+|+|.+||||||+|+.|.+++ ...+++.|.+ +..+..+-.+...-+ .+.+..+ +...
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l-R~~l~~dl~fs~~dR----------~e~~rr~~~~A~l 69 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL-RHGLNADLGFSKEDR----------EENIRRIAEVAKL 69 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH-CTTTTTT--SSHHHH----------HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch-hhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence 47899999999999999999999998 3557777544 433322211111000 0111111 1111
Q ss_pred HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970 103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI 155 (245)
Q Consensus 103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~ 155 (245)
+.. .+..+|++..-............+.. ..-+-||++||.+++.+|=
T Consensus 70 l~~--~G~ivIva~isp~~~~R~~~R~~~~~---~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 70 LAD--QGIIVIVAFISPYREDREWARELIPN---ERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHH--TTSEEEEE----SHHHHHHHHHHHHT---TEEEEEEEES-HHHHHHHT
T ss_pred HHh--CCCeEEEeeccCchHHHHHHHHhCCc---CceEEEEeCCCHHHHHHhC
Confidence 211 23345555443334444444444321 1348999999999999993
No 129
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.89 E-value=4.6e-09 Score=82.83 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=31.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLR 67 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~ 67 (245)
+|.|.|++||||||+|+.|++.+ +..+|+.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 47899999999999999999999 688999987754
No 130
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.89 E-value=2.5e-08 Score=79.62 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHh---CcceeehHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDML 66 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li 66 (245)
+|.|.|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 47899999999999999999987 46788888765
No 131
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.86 E-value=1.5e-08 Score=80.92 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=69.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcc---eeehHHHHHHHHHc----------CCc-------hHHHHHHHHHcCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLC---HLATGDMLRSAVAA----------KTP-------LGIKAKEAMDKGE 88 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~---~i~~~~li~~~~~~----------~~~-------~~~~i~~~l~~~~ 88 (245)
.++.+|.|.|++||||||+|+.|.+.++.. +|+.|+.....-.. +++ +.+.+ ..+..|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L-~~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHL-KDLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHH-HHHHcCC
Confidence 456899999999999999999999999854 77777665421110 011 01111 2233343
Q ss_pred CCCHHHHHHHHHHHH---cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 89 LVSDDLVVGIIDQAM---KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 89 ~~~~~~~~~~l~~~l---~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
.+..-...-....+. .......-+|++|+..-.. +.+. ...|+-||++++.++++.|-..|..
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr-------~~~d~kIfvdtd~D~RliRri~RD~ 150 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR-------DLMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH-------hhcCEEEEEeCCccHHHHHHHHHHH
Confidence 321111100000111 0111235678899743322 1222 2458999999999998888777753
No 132
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.86 E-value=1e-08 Score=81.97 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=69.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC-------CHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV-------SDDLVVGI 98 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~ 98 (245)
..|..+++.|+|||||||++..+.+.+ ++.+|+.|++...+ +....+... ..... -..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 678899999999999999999999987 78899998763221 111111110 00000 01233334
Q ss_pred HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
+...+.. +..+|+|+..........+.+.+...|... .++++.+|++..+.|+..|..
T Consensus 86 ~~~a~~~---~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 86 IEYAIEN---RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHC---T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHHc---CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHHH
Confidence 4444443 347899987666655554555666666654 678899999999999998863
No 133
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.85 E-value=1.5e-07 Score=80.64 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=72.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHc---C---CchHH----HHHHHH-------HcCCC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAA---K---TPLGI----KAKEAM-------DKGEL 89 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~---~---~~~~~----~i~~~l-------~~~~~ 89 (245)
+++|+|+|||||||+++.|+..+. +.+++.|+++...... + ....+ .+..++ ..|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 368999999999999999998775 3489999988321111 0 01111 111111 12222
Q ss_pred CCH------HHHHHHHH-------------------HHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEE
Q 025970 90 VSD------DLVVGIID-------------------QAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVL 142 (245)
Q Consensus 90 ~~~------~~~~~~l~-------------------~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi 142 (245)
... ......+. .++... ....-+|+|........+..+..+....+..+ .+|
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~-~~V 159 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGF-CQL 159 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCE-EEE
Confidence 111 11111110 111100 11124778876555555556666655555444 899
Q ss_pred EEecCHHHHHHHHhCCc
Q 025970 143 NFAIDDSILEERITGRW 159 (245)
Q Consensus 143 ~L~~~~e~~~~R~~~r~ 159 (245)
|+++|.+++.+|..+|.
T Consensus 160 ~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 160 FLDCPVESCLLRNKQRP 176 (340)
T ss_pred EEeCCHHHHHHHHhcCC
Confidence 99999999999999885
No 134
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.85 E-value=6.1e-08 Score=80.89 Aligned_cols=110 Identities=17% Similarity=0.114 Sum_probs=58.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCC----chHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKT----PLGIKAKEAMDKGELVSDDLVVGIIDQA 102 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~~~l~~~ 102 (245)
++|+|+|.|||||||+|+.|++.+ .+.+++.+.+. +.... ..-+.++ ..+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R-----------~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEAR-----------GSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHH-----------HHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHH-----------HHHHHHHHHh
Confidence 378999999999999999999875 34566654443 11111 1111111 1222233333
Q ss_pred HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+. ...-+|+|+.---.-.+-.|-.+....+. ...+||++||.+.+++|=..|.
T Consensus 68 ls---~~~iVI~Dd~nYiKg~RYelyclAr~~~~-~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 68 LS---KDTIVILDDNNYIKGMRYELYCLARAYGT-TFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp HT---T-SEEEE-S---SHHHHHHHHHHHHHTT--EEEEEEEE--HHHHHHHHHHTT
T ss_pred hc---cCeEEEEeCCchHHHHHHHHHHHHHHcCC-CEEEEEECCCHHHHHHhhhccC
Confidence 32 23578888754444444444445455544 4589999999999999977774
No 135
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.85 E-value=4.7e-08 Score=74.55 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=60.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--HHHHcC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGII--DQAMKK 105 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l--~~~l~~ 105 (245)
+++|.|.|||||||+++.|+..+ +. .+++.|. ++..+.....+... . ....+..+. ...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~-~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~- 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN-VRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLA- 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH-HHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHH-
Confidence 47899999999999999999998 53 4455544 34322211100000 0 011111111 11111
Q ss_pred CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
..+..+|+|..-........+..++. ..+..+|+|++|.+++.+|-..
T Consensus 69 -~~G~~VIid~~~~~~~~R~~~~~l~~---~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 -DAGLIVIAAFISPYREDREAARKIIG---GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred -hCCCEEEEccCCCCHHHHHHHHHhcC---CCCEEEEEEeCCHHHHHHhCch
Confidence 12345777765444444444444432 2455799999999999999554
No 136
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.84 E-value=7.6e-08 Score=90.92 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=35.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
++|+|.|||||||||+++.|++++|+.+++++.+.|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 37999999999999999999999999999999988764
No 137
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.82 E-value=3.2e-07 Score=77.11 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc-eeehHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC-HLATGDMLRSAVA 71 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~-~i~~~~li~~~~~ 71 (245)
..++|++|+|.|++||||||+|..|+.++|.. +++. |.+++.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~R 132 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGT-DSIREVMR 132 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHHH
Confidence 33578999999999999999999999999997 5665 55554443
No 138
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.80 E-value=4.6e-08 Score=91.28 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=65.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ 101 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~ 101 (245)
...+|.+|+++|.|||||||+++.|++.+ +..+++.|. +|..+..+..+...-. ..++..+...
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~ 524 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEV 524 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHH
Confidence 33458899999999999999999999997 346777755 4443322111111100 1122222211
Q ss_pred HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970 102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R 154 (245)
.......+..+|+|.......+...+.+.+.. .+-.+|||++|.+.+.+|
T Consensus 525 a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~---~~~~~v~L~~~~e~~~~R 574 (632)
T PRK05506 525 ARLMADAGLIVLVSFISPFREERELARALHGE---GEFVEVFVDTPLEVCEAR 574 (632)
T ss_pred HHHHHhCCCEEEEECCCCCHHHHHHHHHhccc---CCeEEEEECCCHHHHHhh
Confidence 11111223456777543334444444433211 234799999999999999
No 139
>PRK07429 phosphoribulokinase; Provisional
Probab=98.78 E-value=1.3e-07 Score=80.92 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDM 65 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~l 65 (245)
.+.++.+|.|.|++||||||+++.|+..++ ..++..|++
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 456788999999999999999999999987 557777765
No 140
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.77 E-value=1.4e-06 Score=72.29 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=84.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCC-
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CEK- 110 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~- 110 (245)
+|+|+|.+||||||..+.|. .+|+.-++ .+|..++..++........ ..+
T Consensus 3 ~vIiTGlSGaGKs~Al~~lE-D~Gy~cvD---------------------------NlP~~Ll~~l~~~~~~~~~~~~~~ 54 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALE-DLGYYCVD---------------------------NLPPSLLPQLIELLAQSNSKIEKV 54 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHH-hcCeeEEc---------------------------CCcHHHHHHHHHHHHhcCCCCceE
Confidence 68999999999999999995 56776653 2344555555443332211 122
Q ss_pred ceEEcCCCCCHHHHHHHHHH---HHhcCCCccEEEEEecCHHHHHHHHhCC-cccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 111 GFILDGFPRTVVQAEKLDEM---LEKQGTKIDKVLNFAIDDSILEERITGR-WIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 111 ~~iidg~p~~~~~~~~l~~~---~~~~~~~~~~vi~L~~~~e~~~~R~~~r-~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
.+++|- ++......+.+. +...+.. -.++||+|+++++++|.+.- +.||...
T Consensus 55 Ai~iD~--R~~~~~~~~~~~~~~l~~~~~~-~~ilFLdA~d~~LirRy~eTRR~HPL~~--------------------- 110 (284)
T PF03668_consen 55 AIVIDI--RSREFFEDLFEALDELRKKGID-VRILFLDASDEVLIRRYSETRRRHPLSS--------------------- 110 (284)
T ss_pred EEEEeC--CChHHHHHHHHHHHHHHhcCCc-eEEEEEECChHHHHHHHHhccCCCCCCC---------------------
Confidence 345663 222222222222 2233444 37999999999999997654 4455321
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhh
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVL 243 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l 243 (245)
.+...+. ++.-++...++.+.- + ++||+ +.++-++-..|.+.+
T Consensus 111 -----~~~~le~----I~~Er~~L~~lr~~A---d--~vIDTs~l~~~~Lr~~i~~~~ 154 (284)
T PF03668_consen 111 -----DGSLLEA----IEKERELLEPLRERA---D--LVIDTSNLSVHQLRERIRERF 154 (284)
T ss_pred -----CCCcHHH----HHHHHHHHHHHHHhC---C--EEEECCCCCHHHHHHHHHHHh
Confidence 1222222 333344455555432 2 45666 588888888887765
No 141
>PTZ00301 uridine kinase; Provisional
Probab=98.76 E-value=7.7e-08 Score=77.40 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML 66 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li 66 (245)
-++|.|.|+|||||||+|+.|++.++ ..++..|...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 36899999999999999999987762 2356666654
No 142
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.75 E-value=4.4e-07 Score=86.46 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=36.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV 70 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~ 70 (245)
.++|+|.||+||||||+|+.||+++++.+++++.++|...
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 3589999999999999999999999999999999988753
No 143
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.75 E-value=1.7e-06 Score=76.55 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc-eeehHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC-HLATGDMLRSAVA 71 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~-~i~~~~li~~~~~ 71 (245)
.+++|.+|+|.|++||||||++..|+..+|+. ++++ |.+++.+.
T Consensus 251 ~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~lr 295 (475)
T PRK12337 251 RPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVLR 295 (475)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHHH
Confidence 33578999999999999999999999999997 5566 55555443
No 144
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.4e-07 Score=72.30 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=64.0
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH--H
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG--I 98 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--~ 98 (245)
+...+|.+|+|+|.+||||||+|.+|.+++ |. .+++- |-+|..+..+--+...=+ .+.+.+ .
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dLgFs~edR----------~eniRRvae 86 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDLGFSREDR----------IENIRRVAE 86 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCCCCChHHH----------HHHHHHHHH
Confidence 455678899999999999999999999998 43 34444 555665543211111100 001111 1
Q ss_pred HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970 99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154 (245)
Q Consensus 99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R 154 (245)
+...+. ....++|..|-........+.+-+... ..-+=||++||.+++.+|
T Consensus 87 vAkll~---daG~iviva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~R 137 (197)
T COG0529 87 VAKLLA---DAGLIVIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERR 137 (197)
T ss_pred HHHHHH---HCCeEEEEEeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhc
Confidence 111111 123455666655544443333322222 234789999999999988
No 145
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.74 E-value=1.5e-07 Score=76.84 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcc---CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 15 DMMTELLRRFKC---SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.....+++++.. ...++.++.|.|++||||||+++.|+..+.
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344444444442 456789999999999999999999998874
No 146
>COG4639 Predicted kinase [General function prediction only]
Probab=98.74 E-value=2.2e-07 Score=69.84 Aligned_cols=114 Identities=20% Similarity=0.133 Sum_probs=73.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
.++++.|+|||||||+++... .+..+++++++=... . ...++.. ..+. ..-.+.+...+.+++. .++
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-g--~~~~~e~----sqk~~~~~~~~l~~~l~qrl~---~Gk 70 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-G--VSASKEN----SQKNDELVWDILYKQLEQRLR---RGK 70 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-h--hchhhhh----ccccHHHHHHHHHHHHHHHHH---cCC
Confidence 478999999999999998743 477889987764321 1 0001100 0000 0001223334444443 356
Q ss_pred ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
..|+|..-........+..+...++..+ .+|+|+.|.+.+.+|-+.|
T Consensus 71 ~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 71 FTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR 117 (168)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence 7899988777777777777777776655 6799999999999997644
No 147
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.66 E-value=8.4e-08 Score=63.21 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|+|.|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999884
No 148
>PLN02348 phosphoribulokinase
Probab=98.65 E-value=2e-07 Score=80.76 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
...++.+|.|.|++||||||+++.|++.++
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999999986
No 149
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.62 E-value=6.6e-07 Score=72.31 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=82.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHHHHHcC---------CchHHHHHHHHHcCCCCCHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRSAVAAK---------TPLGIKAKEAMDKGELVSDD 93 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~~~~~~---------~~~~~~i~~~l~~~~~~~~~ 93 (245)
...+.+|++.|.|+.|||++|+.|+.-+ | ..+++++++-|+..... .+.+..+++ .
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~----------~ 78 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLRE----------Q 78 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHH----------H
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHH----------H
Confidence 3457799999999999999999999666 3 36889998888766541 122333332 2
Q ss_pred HHHHHHHHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHH-HHhCCcccCCCCccccc
Q 025970 94 LVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE-RITGRWIHPASGRSYHT 170 (245)
Q Consensus 94 ~~~~~l~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~-R~~~r~~~~~~~~~y~~ 170 (245)
+....+.+.+..+ ..+...|+|+.-.+...+..+...+...+..+ ++|..-|+++.+++ .+...... ..+|.
T Consensus 79 ~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~v-lFIEsic~D~~ii~~NI~~~~~~---spDY~- 153 (222)
T PF01591_consen 79 IAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKV-LFIESICDDPEIIERNIREKKQN---SPDYK- 153 (222)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EE-EEEEEE---HHHHHHHHHHHHTT---SGGGT-
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEEEEeCCHHHHHHHHHHHHcC---Ccccc-
Confidence 2222232222222 23456899999889999988888887776322 34444466665554 45443311 11221
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHH
Q 025970 171 KFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214 (245)
Q Consensus 171 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~ 214 (245)
...++...+.+.+|++.|....+++.
T Consensus 154 ------------------~~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 154 ------------------GMDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp ------------------TS-HHHHHHHHHHHHHHHHTT-----
T ss_pred ------------------cCCHHHHHHHHHHHHHhhcccccccc
Confidence 00122245667789999999888887
No 150
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.59 E-value=6.6e-06 Score=66.93 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=87.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCCC-
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM-KKPSCEK- 110 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~~~~~~- 110 (245)
+|+|+|.+|||||+..+.|. .+|+..++ .+|.+++-+++.-.. ......+
T Consensus 3 lvIVTGlSGAGKsvAl~~lE-DlGyycvD---------------------------NLPp~Llp~~~~~~~~~~~~~~kv 54 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLE-DLGYYCVD---------------------------NLPPQLLPKLADLMLTLESRITKV 54 (286)
T ss_pred EEEEecCCCCcHHHHHHHHH-hcCeeeec---------------------------CCCHHHHHHHHHHHhhcccCCceE
Confidence 68999999999999999995 56765552 234555555554332 1111222
Q ss_pred ceEEcCCCCCHHHHHHHHHHH---HhcC-CCccEEEEEecCHHHHHHHHhC-CcccCCCCccccccCCCCCCCCCCCCCC
Q 025970 111 GFILDGFPRTVVQAEKLDEML---EKQG-TKIDKVLNFAIDDSILEERITG-RWIHPASGRSYHTKFAPPKVHGFDDVTG 185 (245)
Q Consensus 111 ~~iidg~p~~~~~~~~l~~~~---~~~~-~~~~~vi~L~~~~e~~~~R~~~-r~~~~~~~~~y~~~~~~p~~~~~~~~~~ 185 (245)
.+++|- ++......+.+.+ .+.+ ..+ .++||+++++++++|.+. |+.||..+
T Consensus 55 Av~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~-------------------- 111 (286)
T COG1660 55 AVVIDV--RSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSE-------------------- 111 (286)
T ss_pred EEEEec--ccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCc--------------------
Confidence 455663 3333333343333 2332 234 699999999999999765 44555432
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhhc
Q 025970 186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVLS 244 (245)
Q Consensus 186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l~ 244 (245)
+.. +..-+..-++...++..--+ ++||+ +.++-++-+.|...+.
T Consensus 112 -------~~~---l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 112 -------DGL---LLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFL 156 (286)
T ss_pred -------cCc---HHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHc
Confidence 111 33334444555666665422 35665 6899999999987764
No 151
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.59 E-value=3e-07 Score=74.63 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=27.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML 66 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li 66 (245)
+|.|.|++||||||+++.|+..+. +.++++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999998873 3567777653
No 152
>PHA00729 NTP-binding motif containing protein
Probab=98.57 E-value=8.4e-07 Score=71.65 Aligned_cols=114 Identities=16% Similarity=0.066 Sum_probs=62.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS 107 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~ 107 (245)
....|+|+|+||+||||+|..|+..++.. .+..+.... .++ .....++-..+...+........
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~---d~~-----------~~~~fid~~~Ll~~L~~a~~~~~ 81 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAW---QYV-----------QNSYFFELPDALEKIQDAIDNDY 81 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHH---hcC-----------CcEEEEEHHHHHHHHHHHHhcCC
Confidence 33589999999999999999999987521 222211100 000 00111222223333333332221
Q ss_pred CCCceEEcCCCCCHHH----------HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 108 CEKGFILDGFPRTVVQ----------AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~----------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
...-.|+|++..-... .-.+..++. ..++.++++.++++.+.+++..|..
T Consensus 82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred CCCEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1123588884221110 011223331 3568899999999999999999864
No 153
>PRK05439 pantothenate kinase; Provisional
Probab=98.56 E-value=8.9e-08 Score=81.12 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML 66 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li 66 (245)
....|.+|.|.|+|||||||+|+.|++.++ +.++++|+..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 446788999999999999999999998663 4577887764
No 154
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.52 E-value=1.5e-06 Score=72.85 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=27.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHh---CcceeehHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDM 65 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~l 65 (245)
+|.|.|++||||||+++.|+..+ +..++..|++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 47899999999999999999877 4557777765
No 155
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.49 E-value=5.6e-07 Score=70.93 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+..|+|+||+||||+|+++.|.+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45789999999999999999999875
No 156
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.48 E-value=2.4e-07 Score=77.89 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML 66 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li 66 (245)
..+.|.+|.|.|++||||||+++.|+..+. +.++++|...
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 346788999999999999999998876653 4456666543
No 157
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.44 E-value=1.5e-07 Score=74.93 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=22.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999996
No 158
>PLN02772 guanylate kinase
Probab=98.44 E-value=4.2e-06 Score=72.72 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
..+.|+|+||+||||+|+.++|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 456899999999999999999988763
No 159
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.43 E-value=6.2e-07 Score=70.49 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLR 67 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~ 67 (245)
+|.|.|++||||||+|+.|++.+ +..+|+.|++.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 47899999999999999999996 457899998876
No 160
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=3.1e-05 Score=62.85 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=45.0
Q ss_pred CChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCccee-ehHHHHHHHHH
Q 025970 11 VPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL-ATGDMLRSAVA 71 (245)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i-~~~~li~~~~~ 71 (245)
+|++..-+.+.+++. ..+.|.+|+|-|+||+||||+|.-||.++|+..+ ++ |.+|+.+.
T Consensus 70 ~~e~a~rY~lwR~ir-~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visT-D~IREvlR 129 (299)
T COG2074 70 DPEVAKRYLLWRRIR-KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVIST-DSIREVLR 129 (299)
T ss_pred CHHHHHHHHHHHHHh-ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecc-hHHHHHHH
Confidence 445555555555554 7788999999999999999999999999999754 55 56666654
No 161
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.34 E-value=8e-06 Score=61.89 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=49.8
Q ss_pred cEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHH
Q 025970 139 DKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYA 218 (245)
Q Consensus 139 ~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~ 218 (245)
-.+|.|.++++++.+|+.+|. .++.+.+..|+..-... -.
T Consensus 116 Llvv~ita~p~VLaqRL~~RG---------------------------------REs~eeI~aRL~R~a~~-------~~ 155 (192)
T COG3709 116 LLVVCITASPEVLAQRLAERG---------------------------------RESREEILARLARAARY-------TA 155 (192)
T ss_pred ceeEEEecCHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHhhccc-------cc
Confidence 368999999999999999984 45678888888642211 11
Q ss_pred hcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 219 KKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 219 ~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..+.++.||+++.++...+.+...+.
T Consensus 156 ~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 156 GPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred CCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 24578999999999998877776553
No 162
>PRK15453 phosphoribulokinase; Provisional
Probab=98.31 E-value=4.1e-06 Score=69.72 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDML 66 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li 66 (245)
+++++|+|+|.|||||||+++.|++.++ ..+++.|+.-
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 4667999999999999999999998774 4567776553
No 163
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.30 E-value=9.4e-06 Score=63.63 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=68.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCC-----------------chHHHHHHHHHcCCCCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKT-----------------PLGIKAKEAMDKGELVS 91 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~-----------------~~~~~i~~~l~~~~~~~ 91 (245)
+..+|.|.|.+.|||||+|+.|...+ |..+|+-|+.....-+-.. .+...+...+......|
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 34688999999999999999999988 6778887776543222100 11223333344333332
Q ss_pred H--H------HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 92 D--D------LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 92 ~--~------~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+ . .+....+.--.......-+|+|||......-. . ..++..|++..+-+++++|=..|.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~--~-------~~~d~~im~~~~y~~~krRr~~Rt 149 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQ--V-------DLFDRIIMLTLDYETCKRRREART 149 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchh--h-------hhhhhheeeeccHHHHHHhhcccc
Confidence 2 1 11111111101111223578899743211100 0 245789999999999999977765
No 164
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.24 E-value=5.7e-06 Score=65.01 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=58.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCC-------chHHHH--HHH---HHcC-------CCCCHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKT-------PLGIKA--KEA---MDKG-------ELVSDD 93 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~-------~~~~~i--~~~---l~~~-------~~~~~~ 93 (245)
+|.|.|..|||++++++.||+++|+++++- +++........ ...... ..+ +..+ ....+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 589999999999999999999999999998 66655433210 000110 011 1111 111222
Q ss_pred HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 94 LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 94 ~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.+.......+........+|+-|. .... ++. +....+.|+|.+|.+..++|+..+.
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR--~a~~------il~--~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGR--CANY------ILR--DIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEEST--THHH------HTT--T-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEec--CHhh------hhC--CCCCeEEEEEECCHHHHHHHHHHHc
Confidence 233333333333322334555553 2111 221 1234689999999999999999873
No 165
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.12 E-value=0.00017 Score=58.67 Aligned_cols=174 Identities=11% Similarity=0.108 Sum_probs=95.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc---eeehHHHHHHHHHcCCchHHHHHHHHH-cCC--CCCHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC---HLATGDMLRSAVAAKTPLGIKAKEAMD-KGE--LVSDDLVVGIID 100 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~---~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~--~~~~~~~~~~l~ 100 (245)
+...|.+|+|.|..||||..+.+.|.+.++=- +.+...--.. +...++--.+-..+- .|. ....++....+.
T Consensus 27 ~~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~e--E~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv 104 (230)
T TIGR03707 27 ETGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDR--ERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV 104 (230)
T ss_pred HcCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH--HHcChHHHHHHHhCCCCCeEEEEeCchhhhHHH
Confidence 45679999999999999999999999988543 3332110000 001111111111111 121 112334444444
Q ss_pred HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCC
Q 025970 101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF 180 (245)
Q Consensus 101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~ 180 (245)
.++...... ..+.....+...|++.+...|... +=++|++|.++..+|+..|..++.+.
T Consensus 105 ~rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-lKfflhIsk~eQ~kRl~~r~~~p~k~--------------- 163 (230)
T TIGR03707 105 ERVMGFCTD-----EEYEEFLRQVPEFERMLVRDGIHL-FKYWLSVSREEQLRRFKARIDDPLKQ--------------- 163 (230)
T ss_pred HHhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc---------------
Confidence 443321100 011223355566777787776544 78899999999999999987544321
Q ss_pred CCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChhH
Q 025970 181 DDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPPKE 234 (245)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~e~ 234 (245)
=..++..+. ++...|.+....+...-+ ....|++|+++...-.
T Consensus 164 -----------Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a 209 (230)
T TIGR03707 164 -----------WKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRA 209 (230)
T ss_pred -----------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHH
Confidence 112222222 334566555555554433 2457999998766443
No 166
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.11 E-value=0.00023 Score=59.01 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=92.2
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcCCc-hHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAKTP-LGIKAKEAMDKGE--LVSDDLVVGIIDQ 101 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~~~-~~~~i~~~l~~~~--~~~~~~~~~~l~~ 101 (245)
...|.+|+|.|..||||..+.+.|.+.++= .+.+...--..+ ...+ +.+.....=..|. ....++....+..
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE--~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~ 130 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEE--LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVV 130 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHH--HcCchHHHHHHhCCCCCeEEEEcCccccchhhh
Confidence 456999999999999999999999998853 333331100000 0011 1111111101121 1112233333333
Q ss_pred HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCC
Q 025970 102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~ 181 (245)
++...... ..+.....+...|++.+...|... +=++|++|.++..+|+..|..++.+.
T Consensus 131 rv~g~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k~---------------- 188 (264)
T TIGR03709 131 RVHGLIPK-----AIWERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTKN---------------- 188 (264)
T ss_pred hhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCccc----------------
Confidence 32211000 001122345566777777776544 77899999999999999987544321
Q ss_pred CCCCCccccCCCCcHHHH--HHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChhH
Q 025970 182 DVTGEPLIQRKDDTAQVL--KSRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPPKE 234 (245)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~--~~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~e~ 234 (245)
=..++..+ .++...|.+....+...-+ ....|++|+++...-.
T Consensus 189 ----------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a 234 (264)
T TIGR03709 189 ----------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFR 234 (264)
T ss_pred ----------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHH
Confidence 11222222 2345666666655555433 2457999998766443
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.10 E-value=2.7e-06 Score=62.75 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=25.7
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
|+|.||||+||||+++.+++.++.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999766544
No 168
>PLN02165 adenylate isopentenyltransferase
Probab=98.08 E-value=3.5e-06 Score=71.87 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=34.8
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.+.++.+|+|+||+||||||++..|++.++..++++|.+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 345566899999999999999999999999999999876
No 169
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=98.08 E-value=8.8e-07 Score=50.03 Aligned_cols=36 Identities=56% Similarity=0.917 Sum_probs=30.5
Q ss_pred CcccCCCCccccccCCCCCCCCCCCCCCCccccCCC
Q 025970 158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD 193 (245)
Q Consensus 158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~ 193 (245)
|++++.+|..||..|+||..+++++.||..|++|.+
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence 457889999999999999999999999999988754
No 170
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.07 E-value=8.9e-06 Score=60.45 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 12 PSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
++.+-...++..+....+++.+|+|.|+.||||||+++.+++.+|..
T Consensus 3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34445556666666555677899999999999999999999999864
No 171
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.04 E-value=2.1e-05 Score=74.00 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceee-----hHHHHHHHHHcCCchHHHHHHHHHcCCCCCH----HHHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA-----TGDMLRSAVAAKTPLGIKAKEAMDKGELVSD----DLVVGIID 100 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~-----~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~l~ 100 (245)
....|++.|.||+||||+++.|++.+++..++ .+.+-+........ ..+..... .....++.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~---------~~~~~~~~~~e~~~~~~~~~ 284 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGA---------VSSPTGAAEVEFRIAKAIAH 284 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCC---------cCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999998655443 33333322111000 00000001 11111211
Q ss_pred ---HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCC-CccEEEEEe--cCHHHHHHHHhCC
Q 025970 101 ---QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGT-KIDKVLNFA--IDDSILEERITGR 158 (245)
Q Consensus 101 ---~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~-~~~~vi~L~--~~~e~~~~R~~~r 158 (245)
..+.. .+.++|+|+.-.+......+.+.+.+.+. .+..+|||+ |++..++++-..|
T Consensus 285 d~~~~v~~--~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r 346 (664)
T PTZ00322 285 DMTTFICK--TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLR 346 (664)
T ss_pred HHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHH
Confidence 11222 24588999987776666555555555543 122355555 6666666554444
No 172
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=0.00025 Score=53.83 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
+.+.++-|+.||||||+...+-..+ ++.++++|.+..+ +.+..+....+.. .+.....+...+. .
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A---------~r~ai~~i~~~I~---~ 68 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQA---------ARVAIDRIARLID---L 68 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHH---------HHHHHHHHHHHHH---c
Confidence 4567889999999999876654444 6788999777544 3333332222221 1122222222222 2
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
..+|..+.........+.+. -.+..|....+.+..-=+.|..++|+..|-
T Consensus 69 ~~~F~~ETtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RV 118 (187)
T COG4185 69 GRPFIAETTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRV 118 (187)
T ss_pred CCCcceEEeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence 34566654433333333222 223344333333333346678899998874
No 173
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.03 E-value=0.00034 Score=62.92 Aligned_cols=171 Identities=14% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHH-cCC--CCCHHHHHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGE--LVSDDLVVGIIDQ 101 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~--~~~~~~~~~~l~~ 101 (245)
...|.+|+|.|..||||+++.+.|.+.++ +.+.+...=-.. +...++--.+-..+- .|. ....++..+.+..
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e--E~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlve 114 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE--ERERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIE 114 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH--HhcCcHHHHHHHhCCCCCeEEEEcCcccchhhHH
Confidence 67899999999999999999999999884 333332110000 001111111111111 121 1122333333333
Q ss_pred HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCC
Q 025970 102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~ 181 (245)
++...... ..+.....+...|++.+...|... +=++|++|.++..+|+..|..++...
T Consensus 115 rv~g~~~~-----~~~~~~~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k~---------------- 172 (493)
T TIGR03708 115 RLEGRIDE-----AKLDSHIEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPETR---------------- 172 (493)
T ss_pred HhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc----------------
Confidence 33211000 001122345566777777776644 78899999999999999997554321
Q ss_pred CCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCCh
Q 025970 182 DVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPP 232 (245)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~ 232 (245)
=..++..++ .+...|.+....+...-+ ....|++|+++...
T Consensus 173 ----------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~ 216 (493)
T TIGR03708 173 ----------WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDR 216 (493)
T ss_pred ----------cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence 122333333 234555555555444332 23479999987653
No 174
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.02 E-value=0.00023 Score=54.36 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred EEEECCCCCChhHHHHHHHhHhC-cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYC-LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF 112 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~-~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 112 (245)
|+=++.+||||||++..|++.|| +.|+.-|++-.+ . ...+.+...+.+. ......+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k---------------------~-~~~f~~~~l~~L~-~~~~~vV 58 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK---------------------R-KPKFIKAVLELLA-KDTHPVV 58 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC---------------------C-HHHHHHHHHHHHh-hCCCCEE
Confidence 45578999999999999999999 999988876211 0 1112222222231 1234578
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCC------CccEEEEEecC----H----HHHHHHHhCCc
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGT------KIDKVLNFAID----D----SILEERITGRW 159 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~------~~~~vi~L~~~----~----e~~~~R~~~r~ 159 (245)
|.|..-.....++++...+..... ..-.+|.|... . +...+|+..|.
T Consensus 59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG 119 (168)
T PF08303_consen 59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG 119 (168)
T ss_pred EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC
Confidence 888766666666665555443211 01123333322 2 56777888885
No 175
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.01 E-value=5.6e-06 Score=70.35 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.+++|+|.||+|||||+++..|++.++..+|++|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 456899999999999999999999999999999874
No 176
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.01 E-value=0.00042 Score=54.25 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHHHhcCCCccEEEEEecCHHHHHHHHhCCccc
Q 025970 129 EMLEKQGTKIDKVLNFAIDDSILEERITGRWIH 161 (245)
Q Consensus 129 ~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~ 161 (245)
+++.+....+|.+|||.++|+++.+|+..|...
T Consensus 145 ~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~ 177 (244)
T KOG4235|consen 145 WILRSMDVSLDGIIYLRASPETCYKRIYLRARE 177 (244)
T ss_pred HHHhccccccceEEEeecChHHHHHHHHHHhhh
Confidence 343343378899999999999999999999753
No 177
>PHA03136 thymidine kinase; Provisional
Probab=98.00 E-value=0.00039 Score=60.12 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCccEEEEEecCHHHHHHHHhCCcc
Q 025970 136 TKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 136 ~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
..||.+|||+++++++.+|+.+|..
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 4688999999999999999999964
No 178
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.99 E-value=1.1e-05 Score=66.32 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=26.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
....|.+|.|.|++|+||||+|+.|+..+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 45679999999999999999999998877
No 179
>PRK09169 hypothetical protein; Validated
Probab=97.98 E-value=0.00011 Score=74.81 Aligned_cols=108 Identities=8% Similarity=0.014 Sum_probs=75.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
...|+|+|.+|+||||+++.|+..++..++++|..+.+. .++.|.+++...+ ...+.....+.+.+. .
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-----~ 2177 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR-----W 2177 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc-----C
Confidence 447899999999999999999999999999999888763 5667777766444 555555555555543 1
Q ss_pred ceEE--cCCCCC-HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 111 GFIL--DGFPRT-VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 111 ~~ii--dg~p~~-~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
..|| .|+... ..... .+... .++||+..+.+.+.+|+...
T Consensus 2178 ~vVLSTGGGav~~~enr~----~L~~~----GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2178 EVVLPAEGFGAAVEQARQ----ALGAK----GLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred CeEEeCCCCcccCHHHHH----HHHHC----CEEEEEECCHHHHHHHhccC
Confidence 2333 233222 22222 22223 47999999999999998765
No 180
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.98 E-value=4.6e-05 Score=69.49 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDM 65 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~l 65 (245)
...++.+|.|.|++||||||+++.|+..+ +...|++|+.
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 33467899999999999999999999887 4457777765
No 181
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.90 E-value=9.8e-05 Score=61.54 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.+..++|+||||+||||+|+.+++.+
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999999865
No 182
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.90 E-value=1.3e-05 Score=62.45 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=27.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC--cceeehHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGD 64 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~ 64 (245)
++|+|+|+|||||||+|..|+..++ ..++.+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5799999999999999999999987 45565543
No 183
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=1.2e-05 Score=60.95 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+-++.|+|+|+||+||||++..+++.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3578999999999999999999998874
No 184
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.88 E-value=0.00024 Score=58.84 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=28.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLR 67 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~ 67 (245)
+|.|+|++||||||+++.|++.++ ..+|+.|+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 478999999999999999998874 45777776644
No 185
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00021 Score=62.97 Aligned_cols=110 Identities=20% Similarity=0.330 Sum_probs=59.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh----C--cceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY----C--LCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELV-SDDLVVGIIDQ 101 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~----~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~-~~~~~~~~l~~ 101 (245)
++.+|+|+|++||||||++..|+..+ | +.++++| ..|... ...+..+... |..+ ...... .+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~aA------~eQLk~yAe~lgvp~~~~~~~~-~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAA------IEQLKRYADTMGMPFYPVKDIK-KFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhhH------HHHHHHHHHhcCCCeeehHHHH-HHHH
Confidence 45689999999999999999999765 2 3345554 333311 1122222222 1111 111122 2223
Q ss_pred HHcCCCCCCceEEc--CCC-CCHHHHHHHHHHHHhcCC--CccEEEEEecCH
Q 025970 102 AMKKPSCEKGFILD--GFP-RTVVQAEKLDEMLEKQGT--KIDKVLNFAIDD 148 (245)
Q Consensus 102 ~l~~~~~~~~~iid--g~p-~~~~~~~~l~~~~~~~~~--~~~~vi~L~~~~ 148 (245)
.+.. .....++|| |++ +...+...|..++...+. ....+++|++.-
T Consensus 294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 3332 223568899 553 566777777776643322 224566666544
No 186
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.87 E-value=2.3e-05 Score=63.08 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=33.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcce-eehHHHHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCH-LATGDMLRSAVA 71 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~-i~~~~li~~~~~ 71 (245)
|+|+|+|.|||||||+++.+.+. |.++ +++.+-++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 58999999999999999999765 5555 999988888665
No 187
>CHL00181 cbbX CbbX; Provisional
Probab=97.86 E-value=0.00013 Score=61.71 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++..++|.|+||+||||+|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 356678999999999999999998875
No 188
>PLN02840 tRNA dimethylallyltransferase
Probab=97.84 E-value=1.5e-05 Score=70.13 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
.++++|+|.||+||||||++..|++.++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 456789999999999999999999999988888875
No 189
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.84 E-value=2.1e-05 Score=62.51 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=59.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHH-HHHcCC--c----hHH-----HHHHHHHcCCCCCHHHHHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRS-AVAAKT--P----LGI-----KAKEAMDKGELVSDDLVVGIID 100 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~-~~~~~~--~----~~~-----~i~~~l~~~~~~~~~~~~~~l~ 100 (245)
+++|.||+|+|||.++-.||+++|.++|+.|.+-.- .+.-++ + +.. .....+..|. ++.+-....+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li 81 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLI 81 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHH
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHH
Confidence 689999999999999999999999999999866221 111011 1 000 0011223343 45555666666
Q ss_pred HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHH-HHHHHHhCC
Q 025970 101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDS-ILEERITGR 158 (245)
Q Consensus 101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e-~~~~R~~~r 158 (245)
..+......+++|++|.--+.. ..+.+-........-.+.++.+++. .-+.|..+|
T Consensus 82 ~~v~~~~~~~~~IlEGGSISLl--~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 82 SEVNSYSAHGGLILEGGSISLL--NCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHTTTTSSEEEEEE--HHHH--HHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHhccccCceEEeCchHHHH--HHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 7777776678999998632221 1111111110112235777777775 444455444
No 190
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.82 E-value=4e-05 Score=61.69 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
....-++|+||||+||||+|+.+|+.++..+.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 34457789999999999999999999987654
No 191
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.81 E-value=1.4e-05 Score=61.71 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=24.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV 70 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~ 70 (245)
+|+|+|++|+||||+++.|++. |++++ .+..+..+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~ 35 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREII 35 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHH
Confidence 4899999999999999999988 88877 35544433
No 192
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.78 E-value=0.00022 Score=58.07 Aligned_cols=172 Identities=14% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCc-hHHHHHHHHHcCC--CCCHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTP-LGIKAKEAMDKGE--LVSDDLVVGIID 100 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~-~~~~i~~~l~~~~--~~~~~~~~~~l~ 100 (245)
....|.+|+|.|..||||+.+.+.|.+.++ +.+.+...--.++ ...+ +.+....+=..|. ....++....+.
T Consensus 27 ~~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE--~~~p~lwRfw~~lP~~G~I~if~rSWY~~~l~ 104 (228)
T PF03976_consen 27 EAGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEE--LRRPFLWRFWRALPARGQIGIFDRSWYEDVLV 104 (228)
T ss_dssp HHHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHH--HTS-TTHHHHTTS--TT-EEEEES-GGGGGTH
T ss_pred HcCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhH--cCCCcHHHHHHhCCCCCEEEEEecchhhHHHH
Confidence 334569999999999999999999998884 3333332110110 0011 1111100000111 011122222222
Q ss_pred HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCC
Q 025970 101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF 180 (245)
Q Consensus 101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~ 180 (245)
.++...... ..+.....+...|++.+...|... +=++|++|.++..+|+..+..++.+.
T Consensus 105 ~rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~~--------------- 163 (228)
T PF03976_consen 105 ERVEGFIDE-----AEWERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLKR--------------- 163 (228)
T ss_dssp HHHTTSSTH-----HHHHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCCG---------------
T ss_pred HHHhcCCCH-----HHHHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCcccc---------------
Confidence 222211000 001122355566777777776544 77899999999999999997554321
Q ss_pred CCCCCCccccCCCCcHHHHHH--HHHHHHHhhHHHHHHHH-hcCcEEEEeCCCCh
Q 025970 181 DDVTGEPLIQRKDDTAQVLKS--RLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPP 232 (245)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~~--rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~ 232 (245)
-..++..++. ....|.+....+...-+ ....|++|+++...
T Consensus 164 -----------wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~ 207 (228)
T PF03976_consen 164 -----------WKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKR 207 (228)
T ss_dssp -----------GG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHH
T ss_pred -----------ccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHH
Confidence 1123333332 35566665555555433 24589999987654
No 193
>PF13173 AAA_14: AAA domain
Probab=97.77 E-value=0.00038 Score=51.44 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP 106 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~ 106 (245)
+++++|.|+.|+||||+++.+++.+. +.+++.++.-..... . .+ +.+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~------------------~-~~-~~~~~~~~~~~- 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA------------------D-PD-LLEYFLELIKP- 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh------------------h-hh-hHHHHHHhhcc-
Confidence 35789999999999999999998865 677777654322100 0 00 12222222111
Q ss_pred CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970 107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154 (245)
Q Consensus 107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R 154 (245)
....+++|.+-........+..+. .. .++.-|++..|......+
T Consensus 61 -~~~~i~iDEiq~~~~~~~~lk~l~-d~--~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 -GKKYIFIDEIQYLPDWEDALKFLV-DN--GPNIKIILTGSSSSLLSK 104 (128)
T ss_pred -CCcEEEEehhhhhccHHHHHHHHH-Hh--ccCceEEEEccchHHHhh
Confidence 234577887643333333333332 22 256788888888766644
No 194
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.75 E-value=2.6e-05 Score=68.36 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
+|..|+|+||||+|||++++.|++.++.+++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4678999999999999999999999999888776
No 195
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.75 E-value=2.4e-05 Score=65.77 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=30.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
+|+|.||+|||||+++..|++.++..+|++|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 479999999999999999999999999999864
No 196
>PLN02748 tRNA dimethylallyltransferase
Probab=97.72 E-value=3.3e-05 Score=69.04 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
..+.+|+|.||+|||||+++..|++.++..+|++|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 456689999999999999999999999999999985
No 197
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.72 E-value=1.9e-05 Score=60.51 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++++++.+..++-+|+|+||+||||||+.+.++.-.
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345566666788899999999999999999998643
No 198
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.71 E-value=0.00023 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++|+|-|+|||||.|+.|.+.+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l 25 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREAL 25 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHH
Confidence 478999999999999999998877
No 199
>PRK06761 hypothetical protein; Provisional
Probab=97.70 E-value=3e-05 Score=64.95 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=24.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
+++|+|.|+|||||||+++.|++.++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 458999999999999999999999864
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=3.6e-05 Score=56.60 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
+..++|.||||+||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999988543
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00079 Score=59.12 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.|.+|+++|++|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 202
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.67 E-value=1.8e-05 Score=63.03 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=27.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
+++.++.+..++-+++|+||+||||||+.+.|-
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 345566677888899999999999999999985
No 203
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.66 E-value=4.5e-05 Score=66.98 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
|..|+|+||||+|||++++.|++.++.+++.++-
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 6789999999999999999999999988877753
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.64 E-value=8.8e-05 Score=64.00 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
.+..+++|.|||||||||+++.|+..++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999999999865
No 205
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=4.1e-05 Score=64.40 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
..+.+|.+.||||.|||++|+.||+++.+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 45679999999999999999999999853
No 206
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=7e-05 Score=63.22 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.+..|+|.||.+||||.++-.||+++|.++||+|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356899999999999999999999999999999876
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.61 E-value=6.7e-05 Score=62.57 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=31.0
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
+..+.+++......+.-++|.|+||+|||++++.|++.+|.+++
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 33344444332223345679999999999999999999987766
No 208
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.60 E-value=0.00011 Score=63.53 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRS 68 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~ 68 (245)
.++|..+.|.||||+|||.+|+.+++++|..+| +..++...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 467889999999999999999999999987655 55555433
No 209
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00041 Score=63.40 Aligned_cols=127 Identities=17% Similarity=0.283 Sum_probs=69.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHHHcCCc-----------------hHHHHHHHHH-cC
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAVAAKTP-----------------LGIKAKEAMD-KG 87 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~~~~~~-----------------~~~~i~~~l~-~~ 87 (245)
..+|.-|+++||||||||+++++||..-+..++++ .+++..+...... +...+...-. ++
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~ 544 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG 544 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC
Confidence 35666789999999999999999999998877766 3444443322111 0111211111 11
Q ss_pred ---CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 88 ---ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 88 ---~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.-+.+.++..++. .+......+++++=+-...- ..++.++-. ...+|.+||+..|+......+.+..
T Consensus 545 g~~~~v~~RVlsqLLt-EmDG~e~~k~V~ViAATNRp---d~ID~ALlR-PGRlD~iiyVplPD~~aR~~Ilk~~ 614 (693)
T KOG0730|consen 545 GSSSGVTDRVLSQLLT-EMDGLEALKNVLVIAATNRP---DMIDPALLR-PGRLDRIIYVPLPDLEARLEILKQC 614 (693)
T ss_pred CCccchHHHHHHHHHH-HcccccccCcEEEEeccCCh---hhcCHHHcC-CcccceeEeecCccHHHHHHHHHHH
Confidence 1223334444332 23444334444443321111 122223322 2467999999999987777666543
No 210
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00011 Score=67.64 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
++=++..-......++++|+.||||+|||++++.+|+.+|-.++.
T Consensus 336 lEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 336 LEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 344444444455677899999999999999999999999865553
No 211
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.58 E-value=6.5e-05 Score=56.23 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.9
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
++|.|+||+|||++++.|++.++..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 6899999999999999999999876643
No 212
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.58 E-value=6.6e-05 Score=55.00 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
++.+....+++.+|++.|.-||||||+++.+++.+|..
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 33333344677899999999999999999999988764
No 213
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00034 Score=60.55 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=27.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
...+++||||+||||+++.++...+..+...+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 34579999999999999999999987766553
No 214
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.56 E-value=0.00011 Score=60.29 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=29.5
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+++..+.....+..+|.|+|+||+||||+...|...|
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 345555555555678899999999999999999998877
No 215
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.56 E-value=0.00016 Score=65.82 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=29.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
...+..+.+|+||+||||||..+.|++.+|+.+..
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 33445588999999999999999999999987663
No 216
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.55 E-value=0.00019 Score=52.86 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=20.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
....++|.|++|+|||++++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999976
No 217
>PRK10646 ADP-binding protein; Provisional
Probab=97.52 E-value=0.00021 Score=54.38 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 12 PSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
++.+-...++..+....+++.+|++.|.-||||||+++.|++.+|+
T Consensus 9 ~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 9 PDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3444455566655555566789999999999999999999999986
No 218
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.51 E-value=0.0011 Score=56.03 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.-++|+|+||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568999999999999998887765
No 219
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=8.5e-05 Score=59.15 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=30.8
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.++..+.++.+...+-+|+||+||||||+.+.|-..
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 456777788888999999999999999999988543
No 220
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00016 Score=66.59 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=36.9
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc--ceeehHHH
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL--CHLATGDM 65 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~--~~i~~~~l 65 (245)
++=+|.+=......++++||.||||+|||++++.+|..+|- +.+|++-+
T Consensus 424 LEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 424 LEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred HHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 33344444446678899999999999999999999999975 45565433
No 221
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.49 E-value=0.00012 Score=56.88 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999988
No 222
>PHA03134 thymidine kinase; Provisional
Probab=97.49 E-value=0.01 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+-.+|.|.|+.|.||||.++.|+..
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 34557899999999999999988864
No 223
>PHA03135 thymidine kinase; Provisional
Probab=97.48 E-value=0.0062 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+-.+|.|.|+.|+||||+++.|++.
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 44568899999999999999999975
No 224
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.47 E-value=9.3e-05 Score=55.48 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998764
No 225
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00015 Score=53.81 Aligned_cols=31 Identities=45% Similarity=0.713 Sum_probs=25.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---Cccee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHL 60 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i 60 (245)
.+..++|+|+||+||||+++.++..+ +..++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 34578899999999999999999987 54444
No 226
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.46 E-value=0.0078 Score=54.36 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=90.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP 106 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~ 106 (245)
....|.+|+|.|..+|||....++|.+.++=-.+.+-.+ ...+ ..+.-...+-.....+
T Consensus 295 ~~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-----~~Pt----------------~~E~~~~~lwRf~~~l 353 (493)
T TIGR03708 295 FRKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-----AAPT----------------DEEKAQHYLWRFWRHI 353 (493)
T ss_pred hCCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-----CCcC----------------HHHHcCcHHHHHHHhC
Confidence 467799999999999999999999998885333322111 0000 0111111122222222
Q ss_pred CCC-CceEEc-------------CCCC------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCc
Q 025970 107 SCE-KGFILD-------------GFPR------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGR 166 (245)
Q Consensus 107 ~~~-~~~iid-------------g~p~------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~ 166 (245)
+.. .-.|+| |+.. ...+...|++.+...|... +-++|++|.++..+|+..|..++...
T Consensus 354 P~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~i-vKf~LhIsk~EQ~~R~~~r~~~p~k~- 431 (493)
T TIGR03708 354 PRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIV-VKFWLHIDKEEQLRRFEERENTPFKR- 431 (493)
T ss_pred CCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEEcCHHHHHHHHHHHhcCCccC-
Confidence 211 112222 2211 2244456677777776644 78899999999999999997544321
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChh
Q 025970 167 SYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPPK 233 (245)
Q Consensus 167 ~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~e 233 (245)
=..+++.++ .+...|......+...-+ ....|++|.++...-
T Consensus 432 -------------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ 476 (493)
T TIGR03708 432 -------------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRY 476 (493)
T ss_pred -------------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHH
Confidence 122333333 334566655555554433 245899999876543
No 227
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.46 E-value=0.00029 Score=51.55 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHHHHHhcc--CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 17 MTELLRRFKC--SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+-+++..+.. .|.+|.++.+.|++|+|||.+++.||+.+
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3334444443 56789999999999999999999999874
No 228
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.46 E-value=0.0001 Score=62.83 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
+..|+|.|+||+||||+++.|++.+|.+++.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 3358999999999999999999999987763
No 229
>PLN02796 D-glycerate 3-kinase
Probab=97.45 E-value=0.00011 Score=63.08 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDM 65 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~l 65 (245)
.+|.+|.|.|++||||||+++.|...+. ...++.|+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 4788999999999999999999998874 345666554
No 230
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.45 E-value=0.00021 Score=61.36 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+++........++.+|.|+|+|||||||++..|...+
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445665554445678899999999999999999987766
No 231
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00021 Score=59.61 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=33.7
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++++.......++.+|-|+|+||+||||+...|...|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 467777776677788899999999999999999998887
No 232
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.44 E-value=0.00014 Score=64.19 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
-..+|+|+|++||||||+++.|++.||...+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4668999999999999999999999988754
No 233
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=7.6e-05 Score=60.73 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=30.2
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+++.++.+..++-+++|.||+||||||+.+.+|--
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566677788999999999999999999999843
No 234
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.42 E-value=0.00014 Score=65.71 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=29.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
+.|.-|+|+||||+|||.+++.+|..++.+++.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4566789999999999999999999999887654
No 235
>PRK12377 putative replication protein; Provisional
Probab=97.42 E-value=0.0054 Score=50.68 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRS 68 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~ 68 (245)
...++|+|+||+|||+++.+++..+ |. .++++.+++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 3468999999999999999999887 33 46666666553
No 236
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.42 E-value=0.00034 Score=52.61 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 13 SVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
+.+...++........+++.+|++.|.-||||||+++.+++.+|+
T Consensus 7 ~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 7 DEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 344444555544456678899999999999999999999999985
No 237
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.41 E-value=0.00019 Score=60.79 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.+++|+|+||.|||||.+|-.||++ +..+||+|.+
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 3458999999999999999999999 5589999865
No 238
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0003 Score=58.76 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=34.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcce--eehHHHHHHHHHcCCc
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCH--LATGDMLRSAVAAKTP 75 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~--i~~~~li~~~~~~~~~ 75 (245)
-|+++||||.|||++++++|..-|..+ +|..+++.+++.....
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 578999999999999999999987544 4667888887764433
No 239
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.41 E-value=0.00015 Score=63.86 Aligned_cols=39 Identities=26% Similarity=0.562 Sum_probs=31.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLR 67 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~ 67 (245)
.+|.-|+|+||||+|||++++.++..++..++ +..++..
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45677899999999999999999999986654 4444443
No 240
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00068 Score=50.98 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
-++.+|+|+|.+||||||++-+|.+.+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 568899999999999999999998877
No 241
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.39 E-value=0.00015 Score=56.65 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=32.1
Q ss_pred HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++++.++....++-+++++||+||||||+.+.+....
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45677777777888899999999999999999987654
No 242
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.39 E-value=0.00015 Score=63.65 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDML 66 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li 66 (245)
...+|.+|.|.|+.||||||+++.|...+. ...|+.|+..
T Consensus 208 ~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 208 DDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 345789999999999999999999987662 4566776653
No 243
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.39 E-value=0.00056 Score=59.18 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.+...+++.|++|||||++.+.|.+. +..++++....+.. ++.+|..-. ..-....+...+...+.....
T Consensus 139 ~~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~~------~qpsQ~~Fe~~l~~~l~~~~~ 208 (345)
T PRK11784 139 AQFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLGG------PQPSQKDFENLLAEALLKLDP 208 (345)
T ss_pred ccCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCCC------CCcchHHHHHHHHHHHHcCCC
Confidence 44557889999999999999999865 77899987765541 222222110 011123445556666665554
Q ss_pred CCceEEcCCCCCHHHH---HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGFPRTVVQA---EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~---~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.+.+++++--+..-.. ..|...+. .. -.|++++|.+..++|+..-.
T Consensus 209 ~~~i~vE~Es~~IG~~~lP~~l~~~m~---~~--~~v~i~~~~e~Rv~~l~~~Y 257 (345)
T PRK11784 209 ARPIVVEDESRRIGRVHLPEALYEAMQ---QA--PIVVVEAPLEERVERLLEDY 257 (345)
T ss_pred CCeEEEEeccccccCccCCHHHHHHHh---hC--CEEEEECCHHHHHHHHHHHh
Confidence 5566676532222111 11112222 22 47899999999999998764
No 244
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.39 E-value=0.00036 Score=59.33 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=26.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~ 59 (245)
+.++..++|+||||+|||++++.++..++..+
T Consensus 27 ~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 27 QEALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34455688999999999999999999987653
No 245
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.38 E-value=0.00064 Score=60.61 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+|.+|+|+|++|+||||++..|+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999998777
No 246
>PRK09087 hypothetical protein; Validated
Probab=97.37 E-value=0.00028 Score=57.51 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=31.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDML 66 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li 66 (245)
.+.++|+|++|||||++++.+++..+..+++...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 456899999999999999999999998899886443
No 247
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.36 E-value=0.00011 Score=59.35 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=29.2
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+++.++..-+++-+++|.||+||||||+.+.+.-
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34556666778889999999999999999999873
No 248
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.34 E-value=6.8e-05 Score=64.58 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.7
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
+.++.+..++-+++|.||+||||||+.+++|
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 3445566788899999999999999999999
No 249
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.34 E-value=0.00022 Score=62.93 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=29.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+|.-++|.||||+|||++++.++...+..++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 4677889999999999999999999998766543
No 250
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.34 E-value=0.00037 Score=60.03 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=27.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
..++..++|+||||+||||+++.++..++..+.
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 344557889999999999999999999987543
No 251
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.34 E-value=0.00024 Score=55.26 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.+++++.|+|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4566899999999999999999987763
No 252
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.33 E-value=0.0001 Score=60.79 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=35.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh----CcceeehHHH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY----CLCHLATGDM 65 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~----~~~~i~~~~l 65 (245)
+++.++++.+++.+++|.||.||||||+.+.|+.-+ |-..++-.++
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 445666777889999999999999999999999755 3455544333
No 253
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00015 Score=58.72 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.1
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
-+++.++.+-.++-.+.|+|++||||||+++.|+-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 46777888888999999999999999999999984
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.33 E-value=0.00025 Score=62.05 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+|.-++|+||||+|||++++.++..++..++..
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 3466799999999999999999999998766544
No 255
>PRK04195 replication factor C large subunit; Provisional
Probab=97.32 E-value=0.00041 Score=62.95 Aligned_cols=33 Identities=33% Similarity=0.655 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
++..++|+||||+||||+++.|++.+++.++..
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 366889999999999999999999999877654
No 256
>PF13245 AAA_19: Part of AAA domain
Probab=97.32 E-value=0.00028 Score=47.24 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=18.5
Q ss_pred CCcEEEEECCCCCChh-HHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKG-TQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKS-t~~~~La~~~ 55 (245)
.+.+++|.|+|||||| |+++.++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999 5555555443
No 257
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.32 E-value=0.00024 Score=61.08 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=27.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
...|+|+|++|+||||+++.|+..++..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 568999999999999999999999998775
No 258
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.32 E-value=0.00015 Score=59.56 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.7
Q ss_pred EECCCCCChhHHHHHHHhHhC
Q 025970 36 LIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 36 i~G~~GsGKSt~~~~La~~~~ 56 (245)
|+||+||||||+|+.+++.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999884
No 259
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00061 Score=58.26 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=41.1
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHHHHHcCCchHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRSAVAAKTPLGIKA 80 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~~~~~~~~~~~~i 80 (245)
..+|+=++++||||+|||-+|++.|...+..+| ..+.++++.+..+..+-+.+
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 366777899999999999999999999987655 55688888777655444333
No 260
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00019 Score=65.06 Aligned_cols=34 Identities=32% Similarity=0.613 Sum_probs=30.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+|.=++|.||||||||.+|+.+|.++|+++++.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 4556678999999999999999999999998876
No 261
>PRK06526 transposase; Provisional
Probab=97.31 E-value=0.0027 Score=52.67 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRS 68 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~ 68 (245)
.+..++|+||||+|||+++..|+... |. .++++.+++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 45578999999999999999987654 33 34444444443
No 262
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.30 E-value=0.00025 Score=62.82 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
...++|+||||+|||++++.|++.++.+++.++
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 356899999999999999999999998877654
No 263
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.30 E-value=0.00013 Score=51.99 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.7
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.+..+...++|.|++||||||+++.+. -|-..+..+++
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 344567789999999999999999987 23344444443
No 264
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.30 E-value=0.00022 Score=56.80 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=27.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC-----cceeehH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATG 63 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~ 63 (245)
|.+|+|.||+|+||||.+.+||..+. +.++++|
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 67899999999999999999998772 3455554
No 265
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=7.7e-05 Score=66.93 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=24.8
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+.++|.++++.||||+||||+.+.|..+|-
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 445666666999999999999999998873
No 266
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.29 E-value=8.4e-05 Score=63.66 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=27.1
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
++.++.....+-+++|.||+||||||+.+.+|
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44455566778899999999999999999999
No 267
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.27 E-value=0.00038 Score=62.45 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=30.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
...+..+..|+||+||||||..+.|++.+|+.++.
T Consensus 106 ~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 106 PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 44456688999999999999999999999987763
No 268
>PRK08116 hypothetical protein; Validated
Probab=97.27 E-value=0.0052 Score=51.40 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=29.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRS 68 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~ 68 (245)
+.-++|.|++|+|||.++..++..+ + +.++++.+++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3357899999999999999998875 3 346677666554
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.27 E-value=0.00021 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.6
Q ss_pred EEEECCCCCChhHHHHHHHhHh
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~ 55 (245)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998654
No 270
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.27 E-value=0.0061 Score=46.32 Aligned_cols=128 Identities=14% Similarity=0.064 Sum_probs=71.1
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHcCCchHHH--HHH-HHHcCC-CC---CHHH---H
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAAKTPLGIK--AKE-AMDKGE-LV---SDDL---V 95 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~--i~~-~l~~~~-~~---~~~~---~ 95 (245)
-+++.+|++-|.+-||||+++..|.+.+. +.++-+|..+.......-..+.- ... ....|. ++ +.-+ .
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~ 99 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA 99 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence 35567999999999999999999998884 45666655544332211111100 000 001111 00 1111 1
Q ss_pred HHHHHHHHcCC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 96 VGIIDQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 96 ~~~l~~~l~~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
..-....+... +.+..+|.|.+..+..........+. ..+..+|-+.||.|++.+|-..|
T Consensus 100 ~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~---g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 100 MHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLE---GCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHh---CCceEEEEeeccHHHHHHHHhhc
Confidence 11112222222 23456888988777655544444432 23457889999999999996654
No 271
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.26 E-value=0.00042 Score=54.09 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=19.2
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
....+..++|.|++|+|||++.+.+.+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999887766
No 272
>PF05729 NACHT: NACHT domain
Probab=97.24 E-value=0.00028 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++|.|++|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 67999999999999999999877
No 273
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.24 E-value=0.00046 Score=58.72 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=32.0
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...+++.+.....++.+|.|+|++||||||++..|+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445667666666778899999999999999999988765
No 274
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.21 E-value=0.00034 Score=63.74 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=29.7
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
...|.-++|+||||+|||++++.++...+.+++.+
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 34566789999999999999999999998877654
No 275
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.21 E-value=0.00037 Score=61.61 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=27.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..|+|.||||+|||++++.|++.++.++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 4789999999999999999999998877644
No 276
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0036 Score=56.35 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
+.|+=|+++||||.|||-+|+++|-+-|++++.+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 5688899999999999999999999999998865
No 277
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.20 E-value=0.0072 Score=46.89 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=65.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcC-----------Cch----HHHHHHHHHcCCCCCHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAK-----------TPL----GIKAKEAMDKGELVSDDL 94 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~-----------~~~----~~~i~~~l~~~~~~~~~~ 94 (245)
+|+|+|..+|||-|++..|.+.++. .++...+-+....... .++ -..+....+.-..-.++.
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5899999999999999999999874 2455544444433321 111 111111111111112233
Q ss_pred HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970 95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT 156 (245)
Q Consensus 95 ~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~ 156 (245)
+.+.+...+. ...|||++. +.......|.+.+ | ..-..|-+.+++++..+|.-
T Consensus 81 F~r~~~~~~~----~~v~iIsD~-Rr~~dv~~f~~~~---g-~~~~~VRV~AseetR~~Rgw 133 (182)
T TIGR01223 81 FCRKIVEGIS----QPIWLVSDT-RRVSDIQWFREAY---G-AVTQTVRVVALEQSRQQRGW 133 (182)
T ss_pred HHHHHHhccC----CCEEEEeCC-CcccHHHHHHHHc---C-CceEEEEEecCHHHHHHHHH
Confidence 3333332221 247888886 5555666555542 2 23478999999999999963
No 278
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0005 Score=62.03 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=28.9
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
+.++-.....|..++|+||||+||||+|+.+++.++.
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3333335555667899999999999999999998865
No 279
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.19 E-value=0.00037 Score=56.36 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.|..++|+|+||+||||+++.|+. ...+++.|..
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS 44 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence 367899999999999999999962 3556666543
No 280
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.17 E-value=0.00044 Score=53.86 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
-..+++.||+|+|||.+++.|++.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999984
No 281
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.17 E-value=0.0021 Score=56.14 Aligned_cols=37 Identities=24% Similarity=0.505 Sum_probs=29.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDM 65 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~l 65 (245)
.++.+|+|.||.|+||||-...||.+|. +.+|++|..
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY 244 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY 244 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence 3477999999999999998888888875 456777543
No 282
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.16 E-value=0.00046 Score=61.55 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
.+|.-++|+||||+|||++++.++..++..++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 466788999999999999999999998766553
No 283
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.16 E-value=0.00025 Score=56.03 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=30.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|+.||||||+.+.|+-.+
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666677788899999999999999999998544
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.14 E-value=0.012 Score=50.52 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++|.||||+||||+++.+++.+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999887
No 285
>PHA02244 ATPase-like protein
Probab=97.13 E-value=0.00064 Score=58.93 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=29.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.-++|.|+||+|||++++.++..++.+++.+..+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 3467899999999999999999999988876543
No 286
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00041 Score=53.93 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=28.9
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHH
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVI 51 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~L 51 (245)
|+++.++.+...+-+|.|+|.+||||||+.+++
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCi 52 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI 52 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCchhHHHHHH
Confidence 566777778888999999999999999999876
No 287
>PRK06620 hypothetical protein; Validated
Probab=97.12 E-value=0.00045 Score=55.81 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
..++|+||+|||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 457899999999999999999887765555
No 288
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.12 E-value=0.00028 Score=51.89 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
++|.|+||.||||+++.||+.+|..+..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999999876553
No 289
>PHA02624 large T antigen; Provisional
Probab=97.11 E-value=0.0011 Score=60.87 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.6
Q ss_pred hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.....+++.+....+....|+|.||||+||||+++.|.+.+|-..+++
T Consensus 415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 344455555555555566999999999999999999999996556665
No 290
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.10 E-value=0.0016 Score=52.93 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDM 65 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~l 65 (245)
.+..++|+|++|+|||++++.++... .+.+++....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34467899999999999999999876 5566766554
No 291
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.10 E-value=0.00073 Score=43.15 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.4
Q ss_pred cEEEEECCCCCChhHHHHHHHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...+|+|+.||||||+..++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999988763
No 292
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.09 E-value=0.00053 Score=57.10 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
++..++|+|++||||||+++.++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 345789999999999999999998875
No 293
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.09 E-value=0.00055 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
|..|.|.|++||||||+.+++...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999988775
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00028 Score=55.21 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=27.0
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
++.++.+-.++-+++|.|+.||||||+.+.+.
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34555667888899999999999999999885
No 295
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.09 E-value=0.0003 Score=56.94 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456667777888899999999999999999998554
No 296
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.07 E-value=0.00072 Score=54.77 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDML 66 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li 66 (245)
...+..++|+|++|+|||++++.++.... +.++++..+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34466789999999999999999987652 4466665543
No 297
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.013 Score=52.71 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=29.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHh-------CcceeehHHHHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY-------CLCHLATGDMLRSAV 70 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~-------~~~~i~~~~li~~~~ 70 (245)
-++|+|++|+|||++++.++..+ .+.+++..+++....
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 47899999999999999998874 346778777665543
No 298
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00034 Score=56.33 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=30.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666777888899999999999999999998644
No 299
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.07 E-value=0.00058 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.435 Sum_probs=20.0
Q ss_pred EEEEECCCCCChhHHHHHHHhH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.|+|.|++||||||+.+.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.07 E-value=0.00089 Score=56.13 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATG 63 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~ 63 (245)
.++.+|+|+|++|+||||.+..||..+ | +.++++|
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456789999999999999999998777 3 3355654
No 301
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.07 E-value=0.00034 Score=56.32 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666777888899999999999999999998654
No 302
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.06 E-value=0.018 Score=45.27 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=62.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHh------CcceeehHHHHHHHHHcCC--------chHHHHHHH---HHcCCCCCHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY------CLCHLATGDMLRSAVAAKT--------PLGIKAKEA---MDKGELVSDDLV 95 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~------~~~~i~~~~li~~~~~~~~--------~~~~~i~~~---l~~~~~~~~~~~ 95 (245)
.++++|.|.+||||+|+.+.-.. .+.++..|+.+-....... .+...++.. +....-+|+++
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv- 81 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV- 81 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh-
Confidence 46899999999999999875433 1345555665422111100 111111111 12222233321
Q ss_pred HHHHHHHHcCC-CCC--CceE-EcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 96 VGIIDQAMKKP-SCE--KGFI-LDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 96 ~~~l~~~l~~~-~~~--~~~i-idg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.++... +.+ +..+ +|...--.-....|.++...+|+.+ -+||+..+-++++++=+.|.
T Consensus 82 -----rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciF-G~Iflas~ide~LqaNS~Rs 143 (291)
T KOG4622|consen 82 -----RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIF-GIIFLASGIDEALQANSHRS 143 (291)
T ss_pred -----eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCee-eeeehhhhHHHHHHhccccc
Confidence 122221 222 2333 3332111222334556777788777 58999999999998866664
No 303
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.06 E-value=0.00033 Score=56.32 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456666677788899999999999999999998654
No 304
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0005 Score=55.37 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=34.4
Q ss_pred HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
.++++.+....+.+-+-+|.||.||||||++..|+-.-++
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 5788888888889999999999999999999999854433
No 305
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.05 E-value=0.00052 Score=51.55 Aligned_cols=23 Identities=52% Similarity=0.892 Sum_probs=20.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
++|.|+|+.||||||++++|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999753
No 306
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.00064 Score=53.64 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...+..++|.|++||||||+.+.|...+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456789999999999999999998765
No 307
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.04 E-value=0.00026 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556666788899999999999999999999654
No 308
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.04 E-value=0.00032 Score=57.40 Aligned_cols=36 Identities=33% Similarity=0.407 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 345566677788899999999999999999998543
No 309
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.04 E-value=0.00034 Score=56.29 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666677888899999999999999999999654
No 310
>PRK13695 putative NTPase; Provisional
Probab=97.04 E-value=0.00063 Score=53.03 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
|.|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999987664
No 311
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.03 E-value=0.00058 Score=51.26 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=23.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
++++|+|.||+||||+.+.|+.. |+..+
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~-Gfatv 37 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA-GFATV 37 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc-Cceee
Confidence 58899999999999999999865 66443
No 312
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00065 Score=57.27 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
...|+++||.|||||-+|+.||+.+++|+-=+|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 447899999999999999999999999877554
No 313
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.02 E-value=0.00038 Score=56.56 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=30.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666777888999999999999999999998654
No 314
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00032 Score=56.41 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++ +++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 345555655667 99999999999999999998543
No 315
>PRK08181 transposase; Validated
Probab=97.02 E-value=0.0073 Score=50.50 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRSA 69 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~~ 69 (245)
.+..++|+|++|+|||.++..++... | +.++++.+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34568999999999999999998644 4 4567777776653
No 316
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.02 E-value=0.0004 Score=57.09 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=30.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456666777888899999999999999999998554
No 317
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.00066 Score=52.77 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHh---C--cceeehH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATG 63 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~ 63 (245)
++++.|+|||||||++..|+..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999998876 3 3456665
No 318
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.02 E-value=0.00038 Score=55.97 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556667788899999999999999999998544
No 319
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.02 E-value=0.00032 Score=56.43 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++...+..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445556666788899999999999999999998654
No 320
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.02 E-value=0.00074 Score=57.87 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|.+|+|+||+||||||++..|+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999877
No 321
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.01 E-value=0.0012 Score=63.34 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=28.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
.+++.++|.||||+|||++++.|++.++..++.
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 345589999999999999999999999766553
No 322
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.01 E-value=0.00031 Score=56.76 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 445555666788899999999999999999998654
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.01 E-value=0.00066 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+|+|.||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998887664
No 324
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.01 E-value=0.00054 Score=60.24 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=29.5
Q ss_pred ChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 12 PSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+.+.+.++.... .-=|+|.|+||+||||+|++||+-|
T Consensus 247 edY~L~dkl~eRL~er---aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 247 EDYGLSDKLKERLEER---AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hhcCCCHHHHHHHHhh---hcceEEecCCCCChhHHHHHHHHHH
Confidence 3455555555555422 2246899999999999999999887
No 325
>CHL00176 ftsH cell division protein; Validated
Probab=97.01 E-value=0.00077 Score=62.93 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=29.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..|.-++|.||||+|||++++.++...+.+++..
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4566799999999999999999999998877754
No 326
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.01 E-value=0.00059 Score=61.88 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
++|.-++|+||||+|||++++.+++.++..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 456678999999999999999999987543
No 327
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.00 E-value=0.00061 Score=55.95 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=32.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAV 70 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~ 70 (245)
|..+++.||||.|||.+|++||.+.+.+++.+ -.++-++.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 77899999999999999999999998887654 34544443
No 328
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.00 E-value=0.00042 Score=56.55 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566667788899999999999999999998554
No 329
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.99 E-value=0.00089 Score=54.90 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGD 64 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~ 64 (245)
+..++|+||+|+|||++++.++.... +.+++.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34789999999999999999887654 46677655
No 330
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.99 E-value=0.00032 Score=56.76 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+..++-+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555667788899999999999999999998544
No 331
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.99 E-value=0.00037 Score=56.11 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345556667788899999999999999999998654
No 332
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.98 E-value=0.00087 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|++||||||+.+.|..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Confidence 4467899999999999999999975
No 333
>PRK06893 DNA replication initiation factor; Validated
Probab=96.98 E-value=0.001 Score=54.29 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=27.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATG 63 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~ 63 (245)
..+.++|+|+||+|||++++.++..+ +..++++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34578999999999999999999775 55566663
No 334
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.98 E-value=0.00086 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=19.9
Q ss_pred CC-ccEEEEEecCHHHHHHHHhCCcc
Q 025970 136 TK-IDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 136 ~~-~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
.. |+++|||++|++++++|+++|+.
T Consensus 65 ~~~pdl~IYL~~~~e~~~~RI~kRgR 90 (146)
T PF01712_consen 65 PKSPDLIIYLDASPETCLERIKKRGR 90 (146)
T ss_dssp CHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred hccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 55 99999999999999999999963
No 335
>PRK09183 transposase/IS protein; Provisional
Probab=96.98 E-value=0.0017 Score=54.01 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=28.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDML 66 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li 66 (245)
..++..++|+||+|+|||+++..|+... | +.++++.+++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 3456678999999999999999996553 3 3355555554
No 336
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.98 E-value=0.00039 Score=56.10 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+++.-.++.+++|.|+.||||||+.+.|+..+
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3445566778899999999999999999998544
No 337
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.00037 Score=55.77 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|+.||||||+.+.|+-.+
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455556666788899999999999999999998654
No 338
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00043 Score=56.02 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445566666788899999999999999999998644
No 339
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00042 Score=56.62 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|++||||||+.+.|+..+
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556677788899999999999999999998665
No 340
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00034 Score=57.24 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345556667788899999999999999999998654
No 341
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.97 E-value=0.00042 Score=56.53 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=27.4
Q ss_pred HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344556778899999999999999999998654
No 342
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0017 Score=53.99 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=27.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
....--++++||||-||||+|+.+|.++|...-
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 344457899999999999999999999987433
No 343
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.97 E-value=0.00088 Score=59.60 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=27.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+..++|+||||+||||+++.+++..+..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344678899999999999999999887665543
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.00084 Score=57.86 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|.+|+|+|++|+||||.+..|+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999888888765
No 345
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00043 Score=57.31 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+..
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 55666777788889999999999999999999854
No 346
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00055 Score=53.21 Aligned_cols=36 Identities=31% Similarity=0.632 Sum_probs=30.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++..-.++.+++|.|++||||||+.+.|+-.+
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456666777888899999999999999999998654
No 347
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.96 E-value=0.00044 Score=56.38 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445666677888899999999999999999999654
No 348
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0004 Score=54.09 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+..++-+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566677788899999999999999999998543
No 349
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.96 E-value=0.00037 Score=56.43 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555666788899999999999999999998654
No 350
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.96 E-value=0.00045 Score=54.27 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666677788899999999999999999999654
No 351
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0004 Score=56.97 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345556677888899999999999999999998544
No 352
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.95 E-value=0.00039 Score=55.62 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555666788899999999999999999998654
No 353
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00057 Score=55.61 Aligned_cols=36 Identities=31% Similarity=0.602 Sum_probs=31.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+..+
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 566667777888899999999999999999998655
No 354
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.95 E-value=0.00044 Score=56.24 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445556677888899999999999999999998543
No 355
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.94 E-value=0.00056 Score=55.62 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4566667777888899999999999999999998554
No 356
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0014 Score=57.27 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
....+..++|+||+|+||||+++.+++.++.
T Consensus 34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred cCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3445667899999999999999999998864
No 357
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0058 Score=54.52 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=26.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh-------CcceeehHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY-------CLCHLATGD 64 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~-------~~~~i~~~~ 64 (245)
+.+|+|.||+|+||||.+..|+..+ .+.++++|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 5689999999999999888887654 245666654
No 358
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.94 E-value=0.00041 Score=56.40 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455566666788899999999999999999999765
No 359
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00036 Score=56.02 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+..++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555566788899999999999999999999543
No 360
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00089 Score=56.89 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
-|+.|+++||.|+|||-+|++||+..|.|++-+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 488999999999999999999999888877743
No 361
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00037 Score=56.94 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455566677788899999999999999999998654
No 362
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.94 E-value=0.00083 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++|.|.|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998776
No 363
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.00092 Score=52.72 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=30.3
Q ss_pred HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970 18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
.-+++.++.+..++-.+++.||+||||||+.+.+|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 44566777788888999999999999999999987
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.93 E-value=0.00057 Score=50.80 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.5
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...+++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 344677799999999999999999998665
No 365
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00045 Score=57.47 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455666677888999999999999999999998553
No 366
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.015 Score=54.08 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
..+.+..++|+|++|+||||+++.|++.++.
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566778899999999999999999999976
No 367
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.93 E-value=0.00048 Score=53.30 Aligned_cols=36 Identities=31% Similarity=0.623 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|+.||||||+++.|+-.+
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455566677788899999999999999999998554
No 368
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.00044 Score=56.76 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556666788899999999999999999998654
No 369
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.92 E-value=0.00092 Score=50.66 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
+.=++|.|++|+||||++..|.++ |+.+++-|.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~ 46 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADDR 46 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence 456799999999999999998865 777776653
No 370
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.92 E-value=0.00053 Score=56.63 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666677788899999999999999999998654
No 371
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.91 E-value=0.00046 Score=56.68 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=29.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++..-.++-+++|+|++||||||+.+.|+-.
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555566678889999999999999999999864
No 372
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.91 E-value=0.0013 Score=56.16 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~ 59 (245)
....|..+++.|+||+||||+++.+++.++..+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 334466777799999999999999999876543
No 373
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.91 E-value=0.00065 Score=54.96 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=31.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+++.|+-.+
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 566677777888899999999999999999998654
No 374
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.91 E-value=0.00047 Score=53.97 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++-+++|.|++||||||+++.|+-.+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455566677888899999999999999999998654
No 375
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.91 E-value=0.0018 Score=50.92 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..+++..++.. .+...|+|.|++||||||+.++|..
T Consensus 6 ~~~~~~~~~~~-~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 6 FYNVLSSLGLY-NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHHHhhcc-cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35667766644 4456779999999999999999874
No 376
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.91 E-value=0.0016 Score=62.30 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
.++.+++|+||||+||||+++.+++.++..++.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 456689999999999999999999999876643
No 377
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.90 E-value=0.00053 Score=54.85 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=31.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|+|++||||||+.+.++-.+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 556667777889999999999999999999998654
No 378
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.90 E-value=0.00048 Score=57.00 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=29.8
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++-+++|.|++||||||+++.|+-.+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566677788899999999999999999999654
No 379
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0018 Score=58.18 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
....+..++|+||+|+||||+|+.|++.++..
T Consensus 36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 44446678999999999999999999998764
No 380
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.90 E-value=0.0014 Score=59.83 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.++++|.||||+||||+++.|++.+
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHH
Confidence 355699999999999999999999876
No 381
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.90 E-value=0.019 Score=50.98 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh-----C--cceeehHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY-----C--LCHLATGDMLRS 68 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~-----~--~~~i~~~~li~~ 68 (245)
.-++|+|++|+|||++++.++..+ + +.++++.++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 347899999999999999988765 2 457777766544
No 382
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00052 Score=56.70 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445566677788899999999999999999998654
No 383
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.90 E-value=0.00045 Score=56.57 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345555666788899999999999999999998654
No 384
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.90 E-value=0.00064 Score=53.02 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=30.5
Q ss_pred HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.|+++.+++.-.....+.|+|..||||||++++|+-.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence 3555666667777889999999999999999999854
No 385
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.90 E-value=0.00061 Score=55.11 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=30.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++-+++|.|++||||||+.+.|+...
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 556666777888899999999999999999998654
No 386
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.00039 Score=56.30 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=29.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555666788899999999999999999998554
No 387
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.89 E-value=0.001 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.8
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCc
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
+++|+|++|||||++|..++...+-
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3689999999999999999987653
No 388
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.89 E-value=0.0011 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=17.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+.+|.||||+||||+...+...+
T Consensus 16 ~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 16 SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 33378999999999997666555443
No 389
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.89 E-value=0.002 Score=50.56 Aligned_cols=40 Identities=30% Similarity=0.578 Sum_probs=30.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSA 69 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~ 69 (245)
.+..++|.|++|+|||.++..++.++ .+.++++.+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45679999999999999999998655 34677888877653
No 390
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.00044 Score=54.14 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=29.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|+.||||||+.+.|+..+
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555666788899999999999999999998543
No 391
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.89 E-value=0.00055 Score=53.32 Aligned_cols=36 Identities=39% Similarity=0.622 Sum_probs=29.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++..-.++.+++|.|++||||||+.+.|+-.+
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445555666788899999999999999999998654
No 392
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00046 Score=57.32 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566677788899999999999999999998654
No 393
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00049 Score=56.59 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|++||||||+++.|+-.+
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556666788899999999999999999999654
No 394
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0075 Score=56.05 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=36.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHHHcC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAVAAK 73 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~~~~ 73 (245)
-+.-|.++||||+|||.++..++...++.+|++ .+++.+.+.+.
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaS 745 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGAS 745 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhccc
Confidence 366789999999999999999999999998887 36666665543
No 395
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.89 E-value=0.00096 Score=59.58 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHH
Q 025970 14 VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSP 49 (245)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~ 49 (245)
......++..++.+..++-+++|+|++||||||+.+
T Consensus 15 e~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 15 QTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 344566777778888889999999999999999999
No 396
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.88 E-value=0.00048 Score=55.24 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 445556666788899999999999999999998543
No 397
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00058 Score=55.77 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++-+++|+|++||||||+++.|+-.+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455666677788899999999999999999998654
No 398
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.88 E-value=0.0015 Score=53.90 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=35.7
Q ss_pred ccCCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHH
Q 025970 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSA 69 (245)
Q Consensus 25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~ 69 (245)
+....+|.+|++.|..||||||++++|-.++. -.+|++|--.++.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 33567899999999999999999999988772 3467777766654
No 399
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.88 E-value=0.001 Score=63.47 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+|.-|+|+||||+|||++++.++...+..+++.
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3455689999999999999999999998776654
No 400
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.88 E-value=0.032 Score=47.59 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=60.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK 104 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 104 (245)
.+.-++|+|++|+|||+++.+++..+ |. .++.+.++++... ..+..+. +... +.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk-----------~~~~~~~------~~~~----l~ 213 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK-----------NSISDGS------VKEK----ID 213 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH-----------HHHhcCc------HHHH----HH
Confidence 44578999999999999999999887 43 4567766665431 1122211 1112 22
Q ss_pred CCCCCCceEEcCCCCC----HHHHHHHHHHHHhc--CCCccEEEEEecCHHHHHHHHh
Q 025970 105 KPSCEKGFILDGFPRT----VVQAEKLDEMLEKQ--GTKIDKVLNFAIDDSILEERIT 156 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~----~~~~~~l~~~~~~~--~~~~~~vi~L~~~~e~~~~R~~ 156 (245)
......-.|||.+... +.....|..++... ...| .+|-=..+.+.+.+++.
T Consensus 214 ~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHLA 270 (306)
T ss_pred HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHh
Confidence 2223356888876432 22223334343321 2333 67777788888888774
No 401
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00098 Score=60.69 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=28.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++..++|.||||+|||.++++++...+..+++.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 4566899999999999999999999777766654
No 402
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.88 E-value=0.0006 Score=55.04 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++...+.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 455666677788899999999999999999998554
No 403
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.88 E-value=0.015 Score=52.46 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=28.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHh-----C--cceeehHHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY-----C--LCHLATGDMLRS 68 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~-----~--~~~i~~~~li~~ 68 (245)
-++|+|++|+|||++++.++..+ + +.+++..++...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 47899999999999999999876 2 446777766544
No 404
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.87 E-value=0.00071 Score=54.21 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++....++-+++|.|++||||||+.+.|+-.+
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 566777777888899999999999999999998554
No 405
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.00058 Score=57.11 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666677888899999999999999999998654
No 406
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.87 E-value=0.00048 Score=56.98 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++++-.++-+++|+|++||||||+.+.|+-.+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445566677888899999999999999999998654
No 407
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00046 Score=56.71 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445566677888899999999999999999999654
No 408
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.86 E-value=0.00073 Score=54.89 Aligned_cols=36 Identities=31% Similarity=0.602 Sum_probs=30.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 566666777888899999999999999999998654
No 409
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00052 Score=57.03 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.+..++-+++|.|++||||||+.+.|+-.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45566667778889999999999999999999954
No 410
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.00045 Score=55.25 Aligned_cols=36 Identities=28% Similarity=0.543 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+..++.+++|.|++||||||+.+.|+-.+
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 455666677888899999999999999999998654
No 411
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.023 Score=53.77 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
....+..++|+|++|+||||+++.|++.++..
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44456677899999999999999999999763
No 412
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.85 E-value=0.00064 Score=56.06 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456666777888999999999999999999998543
No 413
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00058 Score=56.50 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|+|++||||||+++.|+-.+
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455666677788899999999999999999998653
No 414
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.00048 Score=53.17 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555666788899999999999999999998543
No 415
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.85 E-value=0.00051 Score=54.80 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555666788899999999999999999998554
No 416
>PRK10908 cell division protein FtsE; Provisional
Probab=96.84 E-value=0.00054 Score=55.54 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566677888899999999999999999998654
No 417
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.84 E-value=0.001 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..+|++.|++||||||+++.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999874
No 418
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.00067 Score=54.10 Aligned_cols=37 Identities=30% Similarity=0.535 Sum_probs=31.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+++.++.+.+++-+..|+||.|+||||+.+.|+-.+.
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 4556667778888999999999999999999998774
No 419
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.00054 Score=56.66 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|++||||||+++.|+-.+
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 455566677788899999999999999999998654
No 420
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0027 Score=53.38 Aligned_cols=41 Identities=29% Similarity=0.535 Sum_probs=33.1
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRS 68 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~ 68 (245)
.++|....|+||||.|||-+|+.+++.+|+.++ +++.+..+
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 367889999999999999999999999976544 55555444
No 421
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00088 Score=58.87 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
=-++.||||+||||+..++|..+++.+.++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 347999999999999999999998876654
No 422
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.83 E-value=0.001 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEECCCCCChhHHHHHHHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~ 53 (245)
.|+|+|.+|+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999984
No 423
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.0021 Score=58.40 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
..+.+..++|+||+|+||||+++.|++.++..
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44556788999999999999999999999764
No 424
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.0006 Score=56.98 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45556666678889999999999999999999863
No 425
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0005 Score=54.50 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=28.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+++.++..-.++.+++|+|++||||||+.+.|+-
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3455556667888999999999999999999984
No 426
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.83 E-value=0.00062 Score=55.73 Aligned_cols=31 Identities=39% Similarity=0.549 Sum_probs=25.7
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
+..+.+...+.+++++|++||||||..+++-
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMIN 48 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN 48 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence 4445566788899999999999999998874
No 427
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.82 E-value=0.00099 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++|+|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998766
No 428
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.82 E-value=0.00055 Score=55.70 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345555666788899999999999999999998654
No 429
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.82 E-value=0.00058 Score=54.80 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+..++-+++|+|++||||||+.+.|+..+
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345556667788899999999999999999998654
No 430
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.82 E-value=0.00054 Score=56.89 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+++.|+..+
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666677888999999999999999999999654
No 431
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.82 E-value=0.00061 Score=55.91 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=30.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566666788899999999999999999999654
No 432
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.82 E-value=0.00059 Score=56.73 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666677788899999999999999999998654
No 433
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.00058 Score=56.15 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666677888899999999999999999998654
No 434
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.00059 Score=56.07 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++...+..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445555666788899999999999999999998554
No 435
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.015 Score=55.95 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
+.++....+.+..++|.|++|+||||+++.|++.+++.
T Consensus 27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 33333355666778999999999999999999999753
No 436
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.00062 Score=56.22 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
++..++.+-.++-+++|.|++||||||+.+.|+-
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455666778888999999999999999999994
No 437
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.81 E-value=0.00074 Score=54.57 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455666677788899999999999999999998554
No 438
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.81 E-value=0.0024 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.-+++..++|.|+||+|||++|..++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHH
Confidence 336788999999999999999987653
No 439
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.81 E-value=0.00063 Score=56.24 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45566667788889999999999999999999853
No 440
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.00067 Score=56.02 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=29.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++..+.+-.++-+++|.|++||||||+.+.|+-.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566667788889999999999999999999853
No 441
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.80 E-value=0.0022 Score=51.50 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+...+++|+|.|++||||||+.+.+...++
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556788999999999999999999987754
No 442
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0007 Score=56.71 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456666677788899999999999999999998654
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.0012 Score=51.73 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.-.++.+++|.|+.||||||+.+.|+-.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33577799999999999999999998543
No 444
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.00055 Score=56.92 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=29.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+..++-+++|+|++||||||+.+.|+-.+
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445555666788899999999999999999998643
No 445
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.00063 Score=56.27 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++..+.+-.++-+++|+|++||||||+++.|+-.
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34555556678889999999999999999999853
No 446
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.80 E-value=0.00063 Score=54.44 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++-+++|.|++||||||+.+.|+..+
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345556667788899999999999999999998654
No 447
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.0012 Score=63.04 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=28.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
.+|.-++|+||||+||||+++.++..++..++.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 456678999999999999999999999876553
No 448
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.80 E-value=0.00066 Score=55.67 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++.+++|+|+.||||||+.+.|+-.+
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344555566788899999999999999999998654
No 449
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.79 E-value=0.00079 Score=53.47 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 556666677788899999999999999999998654
No 450
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.79 E-value=0.00063 Score=53.33 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+..-.++.+++|.|++||||||+.+.|+..+
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445555666788899999999999999999998654
No 451
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.79 E-value=0.0013 Score=57.69 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.+|.+|.|+|.+||||||++..|...+.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999998875
No 452
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.00073 Score=55.59 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+++.++.+-.++-++.|+||.||||||+.+.+.-
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5667777778888999999999999999998864
No 453
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0007 Score=55.97 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+++.|+-.+
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 445556666788899999999999999999999543
No 454
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0008 Score=55.72 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 556667777888899999999999999999998644
No 455
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.79 E-value=0.00072 Score=55.34 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-++.|.|++||||||+.+.|+-.+
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 445566667788899999999999999999999654
No 456
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.79 E-value=0.00074 Score=55.30 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 456666677888899999999999999999999654
No 457
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.00068 Score=54.81 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=25.7
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
++...+++-.++|+|++||||||+.+.|..
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 344557788999999999999999999985
No 458
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.78 E-value=0.00067 Score=55.03 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=30.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566666788899999999999999999998654
No 459
>PF13479 AAA_24: AAA domain
Probab=96.78 E-value=0.0011 Score=53.63 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
+.+..++|+|+||+||||++..+ -+..+|+++
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E 32 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL---PKPLFIDTE 32 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence 35778999999999999999887 244566664
No 460
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.78 E-value=0.00068 Score=56.59 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666777888899999999999999999998654
No 461
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.77 E-value=0.0018 Score=60.37 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=27.1
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~ 59 (245)
...+..+++|.||+|+||||+++.|+..++..+
T Consensus 106 ~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 106 ENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 334455789999999999999999999887644
No 462
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.046 Score=50.72 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=29.5
Q ss_pred EEEEECCCCCChhHHHHHHHhHh-------CcceeehHHHHHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY-------CLCHLATGDMLRSA 69 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~-------~~~~i~~~~li~~~ 69 (245)
-++|+|++|+|||.+++.++... .+.++++.+++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 37899999999999999998865 34688887776554
No 463
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.77 E-value=0.00064 Score=54.10 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++..-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455566788899999999999999999998654
No 464
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.77 E-value=0.00075 Score=53.86 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=29.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++..-.++-+++|.|++||||||+.+.|+-.
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45566667788889999999999999999999865
No 465
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.77 E-value=0.0014 Score=52.07 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=27.1
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44566778899999999999999999998654
No 466
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0008 Score=55.52 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456666777888899999999999999999998543
No 467
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0015 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+|+|.||+||||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999988765
No 468
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.00066 Score=56.72 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445566666788899999999999999999998654
No 469
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.00075 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++.+++|.|++||||||+++.|+-.+
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456666677788899999999999999999998654
No 470
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0007 Score=56.04 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=29.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4555666678888999999999999999999984
No 471
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.00072 Score=55.76 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++++-.++-+++|+|++||||||+.+.|+-.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566667778889999999999999999999854
No 472
>PLN03025 replication factor C subunit; Provisional
Probab=96.76 E-value=0.0018 Score=55.64 Aligned_cols=23 Identities=43% Similarity=0.772 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++|.||||+||||+++.+++.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887
No 473
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.00071 Score=56.92 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666677888899999999999999999998654
No 474
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.76 E-value=0.00076 Score=54.41 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+..-.++-+++|.|++||||||+.+.|+..+
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 445555666788899999999999999999998654
No 475
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0007 Score=56.64 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=29.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.+-.++-+++|+|++||||||+.+.|+-.
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556667788889999999999999999999864
No 476
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.75 E-value=0.00084 Score=54.82 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.0
Q ss_pred ccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999998654
No 477
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.75 E-value=0.0008 Score=55.77 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++..-.++-+++|+|++||||||+++.|+-.+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666777888899999999999999999998543
No 478
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.018 Score=49.62 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=30.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRS 68 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~ 68 (245)
..++|.|++|+|||+++.+++..+ .+.++++.+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 568999999999999999999876 3456777777654
No 479
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0041 Score=58.75 Aligned_cols=45 Identities=13% Similarity=0.358 Sum_probs=37.4
Q ss_pred CCCCCc-EEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHH
Q 025970 27 SSKPDK-RLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVA 71 (245)
Q Consensus 27 ~~~~~~-~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~ 71 (245)
+|.+|. .++|.||+|+|||-+|+.||+.+. +..|++++++.++.-
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 556665 778899999999999999999984 678899988877654
No 480
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.00072 Score=56.58 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344455788899999999999999999998654
No 481
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.00056 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344555666788899999999999999999998654
No 482
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.00063 Score=56.33 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 344555566788899999999999999999998654
No 483
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0015 Score=61.34 Aligned_cols=36 Identities=31% Similarity=0.514 Sum_probs=32.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..+.|.=++|+||||+|||-+|+++|.+-|++++++
T Consensus 340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 556777889999999999999999999999999876
No 484
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0023 Score=58.26 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
....+..++|+||||+||||+++.|++.++.
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4456678899999999999999999998854
No 485
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0008 Score=55.01 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344555566788899999999999999999998654
No 486
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.74 E-value=0.00072 Score=56.23 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=30.2
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455566677788899999999999999999998654
No 487
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.73 E-value=0.00077 Score=57.43 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666677888899999999999999999998654
No 488
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.73 E-value=0.00064 Score=55.29 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=26.7
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455788899999999999999999998643
No 489
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.73 E-value=0.0071 Score=51.64 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=67.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.+...+++.|++|+|||.+++.|++. |..++++....+.. ++.+|.. ..+..-+...+...+...+...+.
T Consensus 125 ~~~~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hr---Gs~fG~~-----~~~~qpsq~~fe~~L~~~l~~~~~ 195 (311)
T TIGR03167 125 QPFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHR---GSSFGAL-----GLGPQPSQKRFENALAEALRRLDP 195 (311)
T ss_pred CCCceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHhc---CcccCCC-----CCCCCCchHHHHHHHHHHHHhCCC
Confidence 44456679999999999999999866 78889887665431 2221111 000000123344455555555544
Q ss_pred CCceEEcCCCCCHHHH---HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGFPRTVVQA---EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~---~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...+++.+-....... ..|...+. . ..+|.+++|.+.+++|+..-.
T Consensus 196 ~~~i~~e~es~~ig~~~~p~~l~~~m~---~--~~~i~i~~~~e~Rv~~l~~~Y 244 (311)
T TIGR03167 196 GRPIFVEDESRRIGRVALPDALFEAMR---A--APLVELEASLEERVERLVEEY 244 (311)
T ss_pred CceEEEEeCchhhccccCCHHHHHHHh---h--CCEEEEECCHHHHHHHHHHHh
Confidence 4556665432322111 11222222 2 248899999999999998753
No 490
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.00061 Score=56.88 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|++||||||+++.|+-.+
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345555666788899999999999999999998654
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.73 E-value=0.0014 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|.|.|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 492
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.73 E-value=0.0015 Score=66.48 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLR 67 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~ 67 (245)
.+|.=|+++||||+|||.+|++||...++++| +..+++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 45667899999999999999999999988766 4456553
No 493
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0012 Score=53.03 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=28.1
Q ss_pred HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+-.++-+++|.|+.||||||+.+.|+..+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666788899999999999999999998654
No 494
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.00079 Score=55.66 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=29.6
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.+-.++-+++|.|++||||||+++.|+-.
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45566667778889999999999999999999854
No 495
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.72 E-value=0.0017 Score=53.19 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.|..++|+|++||||||++..|-..+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999888776555
No 496
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.72 E-value=0.00077 Score=61.86 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=31.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++...+++..++|.|++||||||+++.|...+
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556666677889999999999999999999998766
No 497
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.00093 Score=55.23 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++..+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455666677788899999999999999999999654
No 498
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.00084 Score=56.23 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=30.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666677788899999999999999999998664
No 499
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0074 Score=49.53 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=34.5
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCC
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKT 74 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~ 74 (245)
+.-+|++ =++++||||+|||.++++.|...... .+..+..+.+.+..+.
T Consensus 184 igidppr--gvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 184 IGIDPPR--GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred hCCCCCc--ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 3345555 45799999999999999999887544 4445566666655443
No 500
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.00072 Score=57.19 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=30.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-.++-+++|.|++||||||+.+.|+..+
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455566666788899999999999999999998654
Done!