Query 025970
Match_columns 245
No_of_seqs 119 out of 1493
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 21:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 2.9E-44 9.8E-49 287.5 25.5 204 32-245 1-204 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 8.8E-45 3E-49 292.8 22.3 212 30-245 7-229 (230)
3 3tlx_A Adenylate kinase 2; str 100.0 7E-43 2.4E-47 286.9 26.6 237 8-244 6-242 (243)
4 3dl0_A Adenylate kinase; phosp 100.0 3.1E-39 1E-43 260.4 25.8 213 32-244 1-213 (216)
5 3fb4_A Adenylate kinase; psych 100.0 1.1E-38 3.7E-43 257.1 26.0 214 32-245 1-214 (216)
6 3be4_A Adenylate kinase; malar 100.0 4.4E-38 1.5E-42 254.1 25.0 215 29-243 3-217 (217)
7 3umf_A Adenylate kinase; rossm 100.0 7.4E-38 2.5E-42 251.6 22.3 187 28-245 26-213 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 2.3E-36 8E-41 246.5 27.9 216 29-244 14-229 (233)
9 1aky_A Adenylate kinase; ATP:A 100.0 4.5E-36 1.5E-40 242.7 27.0 216 29-244 2-218 (220)
10 1e4v_A Adenylate kinase; trans 100.0 5E-36 1.7E-40 241.4 23.5 209 32-244 1-214 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 5.6E-36 1.9E-40 242.8 21.4 212 32-244 1-223 (223)
12 1zd8_A GTP:AMP phosphotransfer 100.0 3E-33 1E-37 227.2 24.5 209 29-244 5-213 (227)
13 1zak_A Adenylate kinase; ATP:A 100.0 2.7E-31 9.4E-36 214.8 20.6 206 29-244 3-209 (222)
14 2cdn_A Adenylate kinase; phosp 100.0 8.5E-28 2.9E-32 191.3 23.3 185 27-244 16-200 (201)
15 3cm0_A Adenylate kinase; ATP-b 100.0 1.8E-26 6E-31 181.2 22.5 183 30-244 3-185 (186)
16 1qf9_A UMP/CMP kinase, protein 100.0 6.3E-26 2.1E-30 178.7 24.3 187 29-244 4-190 (194)
17 2c95_A Adenylate kinase 1; tra 99.9 7.2E-26 2.5E-30 179.0 21.8 185 29-244 7-192 (196)
18 1tev_A UMP-CMP kinase; ploop, 99.9 2.3E-25 7.8E-30 175.7 22.8 187 30-244 2-193 (196)
19 1ukz_A Uridylate kinase; trans 99.9 1.7E-25 5.9E-30 178.1 20.8 187 27-244 11-200 (203)
20 2bwj_A Adenylate kinase 5; pho 99.9 2.7E-25 9.2E-30 176.1 20.6 184 30-244 11-195 (199)
21 2bbw_A Adenylate kinase 4, AK4 99.9 2.1E-24 7.2E-29 177.0 24.9 208 30-244 26-233 (246)
22 3lw7_A Adenylate kinase relate 99.8 2.2E-18 7.6E-23 133.0 21.1 170 32-244 2-175 (179)
23 3vaa_A Shikimate kinase, SK; s 99.8 1.8E-17 6.1E-22 131.4 14.6 175 20-244 14-194 (199)
24 4eaq_A DTMP kinase, thymidylat 99.7 5.8E-17 2E-21 131.3 16.9 179 27-244 22-223 (229)
25 2pbr_A DTMP kinase, thymidylat 99.7 1.4E-16 4.9E-21 125.0 18.4 163 32-244 1-190 (195)
26 2z0h_A DTMP kinase, thymidylat 99.7 3.7E-16 1.3E-20 123.0 18.8 167 32-244 1-190 (197)
27 2wwf_A Thymidilate kinase, put 99.7 2.7E-18 9.2E-23 137.0 5.7 180 24-244 3-198 (212)
28 1ly1_A Polynucleotide kinase; 99.7 3.9E-16 1.3E-20 121.1 16.8 163 31-243 2-170 (181)
29 3t61_A Gluconokinase; PSI-biol 99.7 2.1E-16 7.1E-21 125.4 15.2 158 31-244 18-178 (202)
30 4hlc_A DTMP kinase, thymidylat 99.7 5.5E-16 1.9E-20 123.4 16.9 173 32-244 3-199 (205)
31 3trf_A Shikimate kinase, SK; a 99.7 6.3E-16 2.2E-20 120.7 15.3 164 31-244 5-173 (185)
32 1kht_A Adenylate kinase; phosp 99.7 4.6E-16 1.6E-20 121.8 13.8 175 31-244 3-192 (192)
33 3v9p_A DTMP kinase, thymidylat 99.7 3.2E-16 1.1E-20 126.4 11.7 175 29-244 23-225 (227)
34 4edh_A DTMP kinase, thymidylat 99.7 3.4E-15 1.2E-19 119.5 17.2 174 30-244 5-205 (213)
35 1nks_A Adenylate kinase; therm 99.7 1.7E-15 5.7E-20 118.7 15.1 167 32-243 2-193 (194)
36 2pt5_A Shikimate kinase, SK; a 99.7 1.7E-15 5.7E-20 116.4 14.3 158 32-244 1-162 (168)
37 1y63_A LMAJ004144AAA protein; 99.7 4.3E-15 1.5E-19 116.2 16.8 116 24-159 3-122 (184)
38 3kb2_A SPBC2 prophage-derived 99.7 2.3E-15 7.7E-20 115.9 14.6 146 32-244 2-165 (173)
39 1e6c_A Shikimate kinase; phosp 99.7 3.7E-15 1.3E-19 114.9 15.7 161 32-244 3-169 (173)
40 2v54_A DTMP kinase, thymidylat 99.7 1.4E-15 5E-20 120.3 12.8 169 30-244 3-189 (204)
41 3hjn_A DTMP kinase, thymidylat 99.6 1.8E-14 6.1E-19 114.0 18.8 167 32-245 1-191 (197)
42 2iyv_A Shikimate kinase, SK; t 99.6 9.9E-16 3.4E-20 119.5 11.4 160 32-244 3-167 (184)
43 3lv8_A DTMP kinase, thymidylat 99.6 1.5E-15 5.2E-20 123.2 12.8 179 29-244 25-227 (236)
44 1jjv_A Dephospho-COA kinase; P 99.6 8.2E-15 2.8E-19 116.4 16.3 162 32-244 3-195 (206)
45 4tmk_A Protein (thymidylate ki 99.6 1.7E-14 5.7E-19 115.4 17.8 173 30-244 2-205 (213)
46 1vht_A Dephospho-COA kinase; s 99.6 1.7E-15 5.8E-20 121.5 11.3 164 30-244 3-193 (218)
47 2vli_A Antibiotic resistance p 99.6 2.9E-14 1E-18 110.8 17.8 160 29-244 3-170 (183)
48 2rhm_A Putative kinase; P-loop 99.6 1.7E-15 5.8E-20 118.8 10.1 124 29-159 3-126 (193)
49 2f6r_A COA synthase, bifunctio 99.6 2.2E-15 7.6E-20 125.6 11.2 166 29-244 73-267 (281)
50 4i1u_A Dephospho-COA kinase; s 99.6 1.4E-14 4.7E-19 115.2 15.2 161 33-244 11-200 (210)
51 1zuh_A Shikimate kinase; alpha 99.6 2.9E-15 9.9E-20 115.2 10.9 105 32-158 8-117 (168)
52 2plr_A DTMP kinase, probable t 99.6 2.1E-14 7.1E-19 114.1 16.2 176 30-244 3-206 (213)
53 1nn5_A Similar to deoxythymidy 99.6 1.4E-15 4.8E-20 121.3 9.3 173 28-244 6-199 (215)
54 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 2.7E-14 9.3E-19 117.7 16.0 163 30-244 3-172 (260)
55 1knq_A Gluconate kinase; ALFA/ 99.6 1.3E-13 4.3E-18 106.6 18.7 161 27-244 4-172 (175)
56 4eun_A Thermoresistant glucoki 99.6 1.7E-14 5.6E-19 114.3 13.1 162 26-244 24-192 (200)
57 2if2_A Dephospho-COA kinase; a 99.6 8.1E-15 2.8E-19 116.2 11.1 162 32-244 2-190 (204)
58 1ltq_A Polynucleotide kinase; 99.6 3.6E-15 1.2E-19 125.3 9.4 125 31-159 2-127 (301)
59 3ld9_A DTMP kinase, thymidylat 99.6 3.6E-15 1.2E-19 119.9 8.2 177 26-244 16-214 (223)
60 1via_A Shikimate kinase; struc 99.6 1.2E-14 4.1E-19 112.6 10.7 156 33-244 6-165 (175)
61 2jaq_A Deoxyguanosine kinase; 99.6 1.6E-13 5.5E-18 108.3 17.5 167 32-244 1-199 (205)
62 1cke_A CK, MSSA, protein (cyti 99.6 4.2E-14 1.5E-18 113.7 13.8 115 31-156 5-159 (227)
63 1kag_A SKI, shikimate kinase I 99.6 3E-14 1E-18 109.8 12.0 164 31-244 4-171 (173)
64 1uf9_A TT1252 protein; P-loop, 99.6 4.7E-14 1.6E-18 111.4 13.4 164 28-244 5-192 (203)
65 3tmk_A Thymidylate kinase; pho 99.6 2.3E-14 8E-19 114.7 11.6 177 29-244 3-201 (216)
66 3nwj_A ATSK2; P loop, shikimat 99.6 2.1E-14 7.3E-19 117.5 11.0 183 20-244 34-235 (250)
67 3iij_A Coilin-interacting nucl 99.5 7.9E-14 2.7E-18 108.3 11.8 110 29-159 9-118 (180)
68 3ake_A Cytidylate kinase; CMP 99.5 2.7E-13 9.3E-18 107.4 14.3 163 33-244 4-207 (208)
69 1uj2_A Uridine-cytidine kinase 99.5 7.1E-15 2.4E-19 120.6 5.1 171 27-244 18-232 (252)
70 1q3t_A Cytidylate kinase; nucl 99.5 1.5E-13 5.2E-18 111.5 10.3 43 27-69 12-54 (236)
71 2qt1_A Nicotinamide riboside k 99.5 2.2E-14 7.5E-19 114.0 5.2 170 27-244 17-204 (207)
72 2h92_A Cytidylate kinase; ross 99.5 2.7E-13 9.1E-18 108.6 9.6 39 31-69 3-41 (219)
73 2yvu_A Probable adenylyl-sulfa 99.4 8.5E-13 2.9E-17 103.0 11.3 116 27-156 9-131 (186)
74 2grj_A Dephospho-COA kinase; T 99.4 1.8E-12 6.2E-17 101.9 13.0 43 30-72 11-53 (192)
75 3fdi_A Uncharacterized protein 99.4 1.4E-12 4.7E-17 103.4 12.3 166 31-244 6-197 (201)
76 2qor_A Guanylate kinase; phosp 99.4 7.3E-12 2.5E-16 99.2 16.4 169 28-244 9-195 (204)
77 1p5z_B DCK, deoxycytidine kina 99.4 2.1E-13 7.1E-18 112.5 6.5 32 29-60 22-54 (263)
78 1m7g_A Adenylylsulfate kinase; 99.4 4E-13 1.4E-17 107.1 7.8 114 27-155 21-149 (211)
79 4e22_A Cytidylate kinase; P-lo 99.4 9.9E-12 3.4E-16 101.8 15.4 42 29-70 25-66 (252)
80 3hdt_A Putative kinase; struct 99.4 8.6E-12 2.9E-16 100.3 14.3 173 31-244 14-217 (223)
81 1gvn_B Zeta; postsegregational 99.4 5.9E-11 2E-15 99.1 18.9 145 7-159 6-163 (287)
82 1qhx_A CPT, protein (chloramph 99.4 2E-11 6.7E-16 94.3 14.0 120 31-159 3-134 (178)
83 2vp4_A Deoxynucleoside kinase; 99.3 1.7E-12 5.8E-17 104.9 7.3 80 134-244 143-223 (230)
84 2p5t_B PEZT; postsegregational 99.3 8.9E-12 3E-16 102.1 11.0 125 27-159 28-158 (253)
85 3zvl_A Bifunctional polynucleo 99.3 5E-12 1.7E-16 110.9 9.0 104 29-160 256-359 (416)
86 2pez_A Bifunctional 3'-phospho 99.3 2.5E-11 8.5E-16 94.0 9.6 116 29-158 3-125 (179)
87 3r20_A Cytidylate kinase; stru 99.3 1.2E-10 4.1E-15 94.0 13.9 42 29-70 7-48 (233)
88 3uie_A Adenylyl-sulfate kinase 99.2 2E-10 6.8E-15 90.6 13.0 113 26-155 20-140 (200)
89 2ocp_A DGK, deoxyguanosine kin 99.2 7.8E-10 2.7E-14 89.7 16.5 29 30-58 1-30 (241)
90 1x6v_B Bifunctional 3'-phospho 99.1 2.6E-10 8.8E-15 104.0 10.7 116 29-157 50-171 (630)
91 2axn_A 6-phosphofructo-2-kinas 99.1 1.5E-10 5E-15 104.2 8.3 125 29-159 33-169 (520)
92 2gks_A Bifunctional SAT/APS ki 99.1 1.3E-10 4.4E-15 105.1 6.5 114 28-156 369-488 (546)
93 3tr0_A Guanylate kinase, GMP k 99.0 3.1E-09 1.1E-13 83.6 12.3 28 29-56 5-32 (205)
94 1gtv_A TMK, thymidylate kinase 99.0 3.6E-11 1.2E-15 95.5 0.8 26 32-57 1-26 (214)
95 3tau_A Guanylate kinase, GMP k 99.0 2.4E-09 8.3E-14 84.9 10.0 28 29-56 6-33 (208)
96 2j41_A Guanylate kinase; GMP, 99.0 1.1E-08 3.6E-13 80.6 13.3 29 27-55 2-30 (207)
97 3ch4_B Pmkase, phosphomevalona 99.0 7.5E-09 2.6E-13 81.3 11.8 118 29-155 9-144 (202)
98 1m8p_A Sulfate adenylyltransfe 99.0 2.2E-09 7.7E-14 97.5 9.8 114 29-156 394-514 (573)
99 2ze6_A Isopentenyl transferase 98.9 3.6E-09 1.2E-13 86.6 7.4 122 32-159 2-139 (253)
100 2bdt_A BH3686; alpha-beta prot 98.8 6.4E-08 2.2E-12 75.2 13.4 117 32-159 3-123 (189)
101 1ex7_A Guanylate kinase; subst 98.8 5.8E-09 2E-13 81.3 7.2 163 34-244 4-183 (186)
102 1p6x_A Thymidine kinase; P-loo 98.8 2.7E-08 9.3E-13 84.2 11.8 29 29-57 5-33 (334)
103 1rz3_A Hypothetical protein rb 98.8 3.8E-09 1.3E-13 83.3 5.8 52 14-65 4-61 (201)
104 3asz_A Uridine kinase; cytidin 98.8 2.2E-08 7.5E-13 79.2 9.7 40 27-66 2-43 (211)
105 3a00_A Guanylate kinase, GMP k 98.8 1.2E-07 4.1E-12 73.7 12.2 26 31-56 1-26 (186)
106 3czq_A Putative polyphosphate 98.7 1.3E-07 4.4E-12 78.7 11.6 165 28-243 83-276 (304)
107 2jeo_A Uridine-cytidine kinase 98.7 7E-07 2.4E-11 72.4 14.8 39 20-58 14-52 (245)
108 1bif_A 6-phosphofructo-2-kinas 98.7 3.1E-07 1.1E-11 81.6 13.6 121 29-158 37-172 (469)
109 3lnc_A Guanylate kinase, GMP k 98.6 8.5E-08 2.9E-12 77.0 8.7 34 22-55 18-52 (231)
110 3cr8_A Sulfate adenylyltranfer 98.6 1.2E-07 4E-12 85.7 9.4 116 27-156 365-487 (552)
111 1osn_A Thymidine kinase, VZV-T 98.5 2.7E-06 9.3E-11 72.1 13.4 30 28-57 9-39 (341)
112 1e2k_A Thymidine kinase; trans 98.5 1.8E-06 6.1E-11 73.0 11.9 28 29-56 2-29 (331)
113 3tqc_A Pantothenate kinase; bi 98.4 1.4E-07 4.8E-12 79.6 4.7 38 28-65 89-133 (321)
114 1of1_A Thymidine kinase; trans 98.4 2.1E-06 7.2E-11 73.6 11.7 28 29-56 47-74 (376)
115 4gp7_A Metallophosphoesterase; 98.4 5.1E-06 1.8E-10 63.5 11.9 115 27-159 5-122 (171)
116 1s96_A Guanylate kinase, GMP k 98.4 6.1E-05 2.1E-09 59.9 18.4 28 29-56 14-41 (219)
117 1zp6_A Hypothetical protein AT 98.3 5.1E-07 1.7E-11 70.0 4.3 115 27-159 5-127 (191)
118 3czp_A Putative polyphosphate 98.2 6E-06 2E-10 73.5 10.7 127 28-162 40-172 (500)
119 1a7j_A Phosphoribulokinase; tr 98.2 4.7E-07 1.6E-11 75.4 2.4 38 30-67 4-46 (290)
120 3c8u_A Fructokinase; YP_612366 98.2 2E-06 7E-11 67.8 5.7 50 15-64 6-60 (208)
121 3crm_A TRNA delta(2)-isopenten 98.2 8.2E-07 2.8E-11 74.8 3.3 35 31-65 5-39 (323)
122 3a8t_A Adenylate isopentenyltr 98.1 1E-06 3.5E-11 74.5 3.6 37 29-65 38-74 (339)
123 3czp_A Putative polyphosphate 98.1 2E-05 6.9E-10 70.1 11.0 111 27-162 296-429 (500)
124 3foz_A TRNA delta(2)-isopenten 98.1 2.8E-06 9.5E-11 71.0 4.2 37 29-65 8-44 (316)
125 3d3q_A TRNA delta(2)-isopenten 98.0 2.9E-06 1E-10 71.9 3.8 34 32-65 8-41 (340)
126 3exa_A TRNA delta(2)-isopenten 98.0 3.5E-06 1.2E-10 70.5 3.6 35 31-65 3-37 (322)
127 1dek_A Deoxynucleoside monopho 98.0 6.6E-06 2.3E-10 66.5 5.0 40 32-71 2-41 (241)
128 2ga8_A Hypothetical 39.9 kDa p 98.0 2.5E-06 8.5E-11 72.6 2.5 45 15-59 6-52 (359)
129 3t15_A Ribulose bisphosphate c 98.0 7.5E-06 2.6E-10 68.1 5.3 38 28-65 33-72 (293)
130 3rhf_A Putative polyphosphate 97.9 6.2E-05 2.1E-09 61.8 10.3 164 29-243 73-265 (289)
131 1g8f_A Sulfate adenylyltransfe 97.9 6.3E-06 2.1E-10 73.6 4.3 36 29-64 393-435 (511)
132 3eph_A TRNA isopentenyltransfe 97.9 7E-06 2.4E-10 71.0 3.5 35 30-64 1-35 (409)
133 1kgd_A CASK, peripheral plasma 97.9 1E-05 3.6E-10 62.2 4.1 29 28-56 2-30 (180)
134 2x8a_A Nuclear valosin-contain 97.8 1.6E-05 5.4E-10 65.6 4.9 38 22-61 37-74 (274)
135 3ec2_A DNA replication protein 97.8 5.1E-05 1.7E-09 58.1 7.2 40 29-68 36-81 (180)
136 1odf_A YGR205W, hypothetical 3 97.8 2.4E-05 8.3E-10 65.0 5.4 50 16-65 12-73 (290)
137 3ney_A 55 kDa erythrocyte memb 97.7 2.1E-05 7.3E-10 61.5 4.2 31 26-56 14-44 (197)
138 1svm_A Large T antigen; AAA+ f 97.7 4E-05 1.4E-09 66.0 6.1 45 17-61 155-199 (377)
139 4b4t_M 26S protease regulatory 97.7 2.2E-05 7.5E-10 68.7 4.5 35 28-62 212-246 (434)
140 1sq5_A Pantothenate kinase; P- 97.7 2.4E-05 8.1E-10 65.6 4.5 38 28-65 77-121 (308)
141 4b4t_K 26S protease regulatory 97.7 2.2E-05 7.6E-10 68.6 4.2 35 28-62 203-237 (428)
142 4b4t_L 26S protease subunit RP 97.7 2.6E-05 8.8E-10 68.3 4.5 36 27-62 211-246 (437)
143 4b4t_J 26S protease regulatory 97.7 2.6E-05 8.8E-10 67.5 4.1 35 28-62 179-213 (405)
144 1z6g_A Guanylate kinase; struc 97.6 2.9E-05 1E-09 61.7 3.5 34 22-55 14-47 (218)
145 3hws_A ATP-dependent CLP prote 97.6 6.7E-05 2.3E-09 64.2 5.8 33 30-62 50-82 (363)
146 1lv7_A FTSH; alpha/beta domain 97.6 4.2E-05 1.4E-09 62.1 4.3 33 30-62 44-76 (257)
147 1ixz_A ATP-dependent metallopr 97.6 5.1E-05 1.8E-09 61.4 4.8 28 33-60 51-78 (254)
148 2qz4_A Paraplegin; AAA+, SPG7, 97.6 4.8E-05 1.6E-09 61.6 4.5 34 29-62 37-70 (262)
149 1ye8_A Protein THEP1, hypothet 97.6 4.2E-05 1.4E-09 58.9 3.7 27 32-58 1-27 (178)
150 4b4t_H 26S protease regulatory 97.6 4.1E-05 1.4E-09 67.3 4.0 36 27-62 239-274 (467)
151 3cf0_A Transitional endoplasmi 97.6 4.5E-05 1.6E-09 63.6 4.2 41 28-68 46-88 (301)
152 4b4t_I 26S protease regulatory 97.6 5.3E-05 1.8E-09 66.0 4.5 36 27-62 212-247 (437)
153 3b9p_A CG5977-PA, isoform A; A 97.6 6.1E-05 2.1E-09 62.3 4.5 32 30-61 53-84 (297)
154 3h4m_A Proteasome-activating n 97.5 6.2E-05 2.1E-09 61.9 4.5 34 29-62 49-82 (285)
155 1lvg_A Guanylate kinase, GMP k 97.5 4.2E-05 1.4E-09 59.8 3.2 26 30-55 3-28 (198)
156 2qmh_A HPR kinase/phosphorylas 97.5 4.7E-05 1.6E-09 59.5 3.4 34 30-64 33-66 (205)
157 1g41_A Heat shock protein HSLU 97.5 5.2E-05 1.8E-09 66.5 3.8 34 30-63 49-82 (444)
158 1htw_A HI0065; nucleotide-bind 97.5 8.8E-05 3E-09 55.9 4.6 36 20-55 22-57 (158)
159 2c9o_A RUVB-like 1; hexameric 97.5 0.00011 3.7E-09 65.0 5.8 44 19-62 51-96 (456)
160 1jbk_A CLPB protein; beta barr 97.5 0.00015 5.3E-09 55.1 5.9 38 16-55 30-67 (195)
161 3n70_A Transport activator; si 97.5 8.6E-05 3E-09 54.9 4.2 39 17-55 10-48 (145)
162 1iy2_A ATP-dependent metallopr 97.5 9.4E-05 3.2E-09 60.8 4.8 27 34-60 76-102 (278)
163 3eie_A Vacuolar protein sortin 97.5 8.5E-05 2.9E-09 62.5 4.5 34 29-62 49-82 (322)
164 1d2n_A N-ethylmaleimide-sensit 97.5 7.7E-05 2.6E-09 61.0 4.0 35 28-62 61-95 (272)
165 2v9p_A Replication protein E1; 97.5 9.3E-05 3.2E-09 61.8 4.6 37 19-55 114-150 (305)
166 2p65_A Hypothetical protein PF 97.4 0.00016 5.4E-09 54.9 5.0 27 29-55 41-67 (187)
167 3pfi_A Holliday junction ATP-d 97.4 0.00016 5.6E-09 60.9 5.5 35 28-62 52-86 (338)
168 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00012 4E-09 61.7 4.5 32 29-60 43-75 (322)
169 1um8_A ATP-dependent CLP prote 97.4 9.9E-05 3.4E-09 63.3 4.0 33 30-62 71-103 (376)
170 1l8q_A Chromosomal replication 97.4 0.00033 1.1E-08 58.7 7.1 37 30-66 36-77 (324)
171 1ofh_A ATP-dependent HSL prote 97.4 0.0001 3.4E-09 61.1 3.8 31 30-60 49-79 (310)
172 3aez_A Pantothenate kinase; tr 97.4 0.00012 4.3E-09 61.3 4.3 28 28-55 87-114 (312)
173 3syl_A Protein CBBX; photosynt 97.4 0.00019 6.5E-09 59.6 5.3 28 28-55 64-91 (309)
174 1znw_A Guanylate kinase, GMP k 97.4 0.00013 4.4E-09 57.3 3.9 30 27-56 16-45 (207)
175 2qp9_X Vacuolar protein sortin 97.4 0.00013 4.4E-09 62.3 4.2 34 29-62 82-115 (355)
176 1tue_A Replication protein E1; 97.4 0.00017 5.6E-09 56.7 4.4 30 31-60 58-87 (212)
177 2w58_A DNAI, primosome compone 97.3 0.00065 2.2E-08 52.7 7.8 37 32-68 55-96 (202)
178 1in4_A RUVB, holliday junction 97.3 0.00015 5.1E-09 61.3 4.3 30 30-59 50-79 (334)
179 3d8b_A Fidgetin-like protein 1 97.3 0.00024 8.2E-09 60.6 5.4 33 29-61 115-147 (357)
180 1kjw_A Postsynaptic density pr 97.3 0.0014 4.6E-08 54.5 9.7 25 29-56 103-127 (295)
181 2kjq_A DNAA-related protein; s 97.3 0.00012 4E-09 54.6 2.9 26 30-55 35-60 (149)
182 2r62_A Cell division protease 97.3 5.9E-05 2E-09 61.5 1.4 32 31-62 44-75 (268)
183 3uk6_A RUVB-like 2; hexameric 97.2 0.00037 1.3E-08 59.3 5.7 37 21-57 60-96 (368)
184 3e70_C DPA, signal recognition 97.2 0.00038 1.3E-08 58.8 5.6 27 29-55 127-153 (328)
185 3cf2_A TER ATPase, transitiona 97.2 0.00018 6.3E-09 67.5 3.7 35 28-62 235-269 (806)
186 3co5_A Putative two-component 97.2 6.2E-05 2.1E-09 55.6 0.4 25 32-56 28-52 (143)
187 3u61_B DNA polymerase accessor 97.2 0.00041 1.4E-08 58.1 5.4 36 27-62 44-79 (324)
188 3vfd_A Spastin; ATPase, microt 97.2 0.00026 9.1E-09 61.0 4.3 33 30-62 147-179 (389)
189 2qm8_A GTPase/ATPase; G protei 97.2 0.00041 1.4E-08 58.8 5.4 37 19-55 43-79 (337)
190 3bos_A Putative DNA replicatio 97.2 0.00027 9.3E-09 56.0 4.0 35 30-64 51-90 (242)
191 1sxj_A Activator 1 95 kDa subu 97.2 0.00026 8.9E-09 63.5 4.2 33 30-62 76-108 (516)
192 2ce7_A Cell division protein F 97.2 0.0003 1E-08 62.4 4.5 33 30-62 48-80 (476)
193 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00028 9.5E-09 58.9 4.0 31 30-60 37-67 (324)
194 2eyu_A Twitching motility prot 97.2 0.00038 1.3E-08 56.8 4.7 34 20-55 16-49 (261)
195 2chg_A Replication factor C sm 97.2 0.00056 1.9E-08 53.2 5.6 23 33-55 40-62 (226)
196 2zan_A Vacuolar protein sortin 97.1 0.0003 1E-08 61.9 4.1 40 29-68 165-207 (444)
197 1xjc_A MOBB protein homolog; s 97.1 0.00034 1.2E-08 53.3 3.7 25 31-55 4-28 (169)
198 1njg_A DNA polymerase III subu 97.1 0.00048 1.6E-08 54.3 4.8 29 28-56 42-70 (250)
199 1vma_A Cell division protein F 97.1 0.00064 2.2E-08 56.8 5.6 27 29-55 102-128 (306)
200 2ehv_A Hypothetical protein PH 97.1 0.00028 9.7E-09 56.5 3.2 24 29-52 28-51 (251)
201 2qby_B CDC6 homolog 3, cell di 97.1 0.00059 2E-08 58.2 5.2 28 28-55 42-69 (384)
202 2z4s_A Chromosomal replication 97.1 0.001 3.4E-08 58.5 6.8 36 31-66 130-172 (440)
203 3tif_A Uncharacterized ABC tra 97.0 0.00023 7.8E-09 57.2 2.4 34 22-55 22-55 (235)
204 2v1u_A Cell division control p 97.0 0.0005 1.7E-08 58.5 4.6 28 28-55 41-68 (387)
205 1c9k_A COBU, adenosylcobinamid 97.0 0.00029 9.9E-09 54.2 2.7 25 33-58 1-25 (180)
206 4fcw_A Chaperone protein CLPB; 97.0 0.00078 2.7E-08 55.8 5.5 25 31-55 47-71 (311)
207 2bjv_A PSP operon transcriptio 97.0 0.00041 1.4E-08 56.4 3.7 26 31-56 29-54 (265)
208 3b9q_A Chloroplast SRP recepto 97.0 0.0005 1.7E-08 57.4 4.2 27 29-55 98-124 (302)
209 3te6_A Regulatory protein SIR3 97.0 0.00047 1.6E-08 57.9 4.0 28 28-55 42-69 (318)
210 1rj9_A FTSY, signal recognitio 97.0 0.00051 1.7E-08 57.3 4.3 26 30-55 101-126 (304)
211 3hu3_A Transitional endoplasmi 97.0 0.00068 2.3E-08 60.4 5.3 35 28-62 235-269 (489)
212 4a74_A DNA repair and recombin 97.0 0.00033 1.1E-08 55.4 2.9 28 27-54 21-48 (231)
213 3p32_A Probable GTPase RV1496/ 97.0 0.00089 3E-08 57.1 5.7 37 19-55 67-103 (355)
214 2i3b_A HCR-ntpase, human cance 97.0 0.00044 1.5E-08 53.7 3.4 24 32-55 2-25 (189)
215 2qby_A CDC6 homolog 1, cell di 97.0 0.00079 2.7E-08 57.2 5.2 28 28-55 42-69 (386)
216 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00064 2.2E-08 53.6 4.3 29 27-55 19-47 (235)
217 3m6a_A ATP-dependent protease 97.0 0.00054 1.8E-08 61.8 4.3 31 30-60 107-137 (543)
218 2dhr_A FTSH; AAA+ protein, hex 97.0 0.00047 1.6E-08 61.5 3.9 31 31-61 64-94 (499)
219 2cvh_A DNA repair and recombin 96.9 0.00053 1.8E-08 53.7 3.7 36 27-62 16-53 (220)
220 1cr0_A DNA primase/helicase; R 96.9 0.00056 1.9E-08 56.6 3.9 35 21-55 25-59 (296)
221 1np6_A Molybdopterin-guanine d 96.9 0.00057 2E-08 52.3 3.6 25 31-55 6-30 (174)
222 2yhs_A FTSY, cell division pro 96.9 0.00036 1.2E-08 61.9 2.7 28 28-55 290-317 (503)
223 2pcj_A ABC transporter, lipopr 96.9 0.00025 8.6E-09 56.5 1.6 34 22-55 21-54 (224)
224 3pvs_A Replication-associated 96.9 0.0007 2.4E-08 59.6 4.5 31 32-62 51-81 (447)
225 2cbz_A Multidrug resistance-as 96.9 0.00048 1.6E-08 55.4 3.2 35 21-55 21-55 (237)
226 2og2_A Putative signal recogni 96.9 0.00075 2.6E-08 57.6 4.2 27 29-55 155-181 (359)
227 3gfo_A Cobalt import ATP-bindi 96.9 0.00032 1.1E-08 57.7 1.8 35 21-55 24-58 (275)
228 1b0u_A Histidine permease; ABC 96.9 0.00055 1.9E-08 55.9 3.2 34 22-55 23-56 (262)
229 2orw_A Thymidine kinase; TMTK, 96.9 0.00071 2.4E-08 52.2 3.6 25 31-55 3-27 (184)
230 1fnn_A CDC6P, cell division co 96.9 0.0014 4.8E-08 55.9 5.8 24 32-55 45-68 (389)
231 2p67_A LAO/AO transport system 96.8 0.0011 3.8E-08 56.2 5.0 37 19-55 44-80 (341)
232 1mv5_A LMRA, multidrug resista 96.8 0.00058 2E-08 55.1 3.1 35 21-55 18-52 (243)
233 4g1u_C Hemin import ATP-bindin 96.8 0.00036 1.2E-08 57.1 1.9 34 22-55 28-61 (266)
234 2gza_A Type IV secretion syste 96.8 0.00033 1.1E-08 60.0 1.6 35 22-56 166-200 (361)
235 2ff7_A Alpha-hemolysin translo 96.8 0.00037 1.3E-08 56.4 1.8 34 22-55 26-59 (247)
236 2olj_A Amino acid ABC transpor 96.8 0.00062 2.1E-08 55.6 3.2 34 22-55 41-74 (263)
237 1sxj_E Activator 1 40 kDa subu 96.8 0.0011 3.7E-08 56.0 4.8 26 29-55 35-60 (354)
238 1vpl_A ABC transporter, ATP-bi 96.8 0.00045 1.5E-08 56.2 2.3 34 22-55 32-65 (256)
239 2zu0_C Probable ATP-dependent 96.8 0.00055 1.9E-08 56.0 2.9 33 22-54 37-69 (267)
240 1g6h_A High-affinity branched- 96.8 0.00041 1.4E-08 56.5 2.0 34 22-55 24-57 (257)
241 2ixe_A Antigen peptide transpo 96.8 0.00065 2.2E-08 55.8 3.2 35 21-55 35-69 (271)
242 2qgz_A Helicase loader, putati 96.8 0.0012 4.1E-08 55.1 4.9 38 31-68 152-195 (308)
243 3clv_A RAB5 protein, putative; 96.8 0.001 3.5E-08 50.9 4.2 29 26-54 2-30 (208)
244 3cf2_A TER ATPase, transitiona 96.8 0.00057 2E-08 64.2 3.1 34 29-62 509-542 (806)
245 1ypw_A Transitional endoplasmi 96.8 0.00064 2.2E-08 64.2 3.4 35 28-62 235-269 (806)
246 2onk_A Molybdate/tungstate ABC 96.8 0.00079 2.7E-08 54.2 3.5 33 22-55 16-48 (240)
247 2ghi_A Transport protein; mult 96.8 0.00068 2.3E-08 55.3 3.2 35 21-55 36-70 (260)
248 1sxj_D Activator 1 41 kDa subu 96.8 0.0014 4.9E-08 55.1 5.3 23 34-56 61-83 (353)
249 1ky3_A GTP-binding protein YPT 96.8 0.00077 2.6E-08 50.8 3.3 26 28-53 5-30 (182)
250 3b85_A Phosphate starvation-in 96.8 0.00069 2.4E-08 53.3 3.1 26 29-54 20-45 (208)
251 2ged_A SR-beta, signal recogni 96.8 0.0011 3.7E-08 50.7 4.2 26 29-54 46-71 (193)
252 1ji0_A ABC transporter; ATP bi 96.8 0.00059 2E-08 54.9 2.7 34 22-55 23-56 (240)
253 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00083 2.8E-08 54.4 3.6 33 22-54 20-52 (250)
254 1sgw_A Putative ABC transporte 96.8 0.00061 2.1E-08 53.9 2.7 34 22-55 26-59 (214)
255 3pxg_A Negative regulator of g 96.8 0.00096 3.3E-08 59.1 4.2 25 31-55 201-225 (468)
256 3kl4_A SRP54, signal recogniti 96.8 0.0015 5E-08 57.2 5.3 26 30-55 96-121 (433)
257 2b8t_A Thymidine kinase; deoxy 96.8 0.001 3.5E-08 53.0 3.9 29 27-55 8-36 (223)
258 1n0w_A DNA repair protein RAD5 96.8 0.00074 2.5E-08 53.8 3.2 27 28-54 21-47 (243)
259 2pze_A Cystic fibrosis transme 96.8 0.00061 2.1E-08 54.5 2.7 34 22-55 25-58 (229)
260 2r44_A Uncharacterized protein 96.8 0.00057 2E-08 57.4 2.6 28 33-60 48-75 (331)
261 2r2a_A Uncharacterized protein 96.7 0.001 3.6E-08 51.9 3.8 25 29-53 3-27 (199)
262 2px0_A Flagellar biosynthesis 96.7 0.001 3.5E-08 55.3 3.9 27 29-55 103-129 (296)
263 1zu4_A FTSY; GTPase, signal re 96.7 0.002 6.7E-08 54.2 5.6 27 29-55 103-129 (320)
264 2ihy_A ABC transporter, ATP-bi 96.7 0.0005 1.7E-08 56.7 1.8 34 22-55 38-71 (279)
265 2iwr_A Centaurin gamma 1; ANK 96.7 0.00084 2.9E-08 50.6 3.0 29 26-54 2-30 (178)
266 2f1r_A Molybdopterin-guanine d 96.7 0.00042 1.4E-08 52.9 1.3 24 32-55 3-26 (171)
267 2yz2_A Putative ABC transporte 96.7 0.00085 2.9E-08 54.9 3.2 35 21-55 23-57 (266)
268 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00066 2.3E-08 57.9 2.6 33 23-55 22-54 (359)
269 2qi9_C Vitamin B12 import ATP- 96.7 0.00084 2.9E-08 54.4 3.0 34 22-55 17-50 (249)
270 1sxj_C Activator 1 40 kDa subu 96.7 0.002 6.8E-08 54.4 5.5 22 34-55 49-70 (340)
271 3tqf_A HPR(Ser) kinase; transf 96.7 0.00094 3.2E-08 50.9 3.0 33 31-64 16-48 (181)
272 1fzq_A ADP-ribosylation factor 96.7 0.0014 4.8E-08 49.8 4.1 33 22-54 7-39 (181)
273 3rlf_A Maltose/maltodextrin im 96.7 0.00079 2.7E-08 57.9 2.9 34 22-55 20-53 (381)
274 3bwd_D RAC-like GTP-binding pr 96.7 0.0013 4.3E-08 49.7 3.7 29 26-54 3-31 (182)
275 3tw8_B RAS-related protein RAB 96.7 0.00088 3E-08 50.4 2.8 27 27-53 5-31 (181)
276 2yyz_A Sugar ABC transporter, 96.7 0.00083 2.8E-08 57.4 2.9 34 22-55 20-53 (359)
277 1jr3_A DNA polymerase III subu 96.7 0.0021 7.2E-08 54.5 5.4 30 28-57 35-64 (373)
278 2wjg_A FEOB, ferrous iron tran 96.6 0.0013 4.4E-08 50.1 3.6 26 29-54 5-30 (188)
279 2nq2_C Hypothetical ABC transp 96.6 0.00094 3.2E-08 54.2 3.0 34 22-55 22-55 (253)
280 2fn4_A P23, RAS-related protei 96.6 0.0012 4.1E-08 49.6 3.4 27 28-54 6-32 (181)
281 1lw7_A Transcriptional regulat 96.6 0.00095 3.3E-08 57.0 3.1 28 31-58 170-197 (365)
282 2it1_A 362AA long hypothetical 96.6 0.00088 3E-08 57.3 2.9 34 22-55 20-53 (362)
283 2ewv_A Twitching motility prot 96.6 0.0013 4.4E-08 56.5 3.9 28 28-55 133-160 (372)
284 2qag_B Septin-6, protein NEDD5 96.6 0.0013 4.3E-08 57.4 3.8 34 21-54 30-65 (427)
285 1iqp_A RFCS; clamp loader, ext 96.6 0.0021 7.3E-08 53.3 5.1 23 33-55 48-70 (327)
286 2www_A Methylmalonic aciduria 96.6 0.0014 4.8E-08 55.7 3.9 27 29-55 72-98 (349)
287 2wji_A Ferrous iron transport 96.6 0.0012 4.2E-08 49.3 3.2 23 31-53 3-25 (165)
288 2chq_A Replication factor C sm 96.6 0.0025 8.4E-08 52.8 5.4 22 34-55 41-62 (319)
289 3tui_C Methionine import ATP-b 96.6 0.00096 3.3E-08 57.0 2.9 34 22-55 45-78 (366)
290 1v43_A Sugar-binding transport 96.6 0.00096 3.3E-08 57.3 2.9 34 22-55 28-61 (372)
291 1z47_A CYSA, putative ABC-tran 96.6 0.00081 2.8E-08 57.3 2.4 35 21-55 31-65 (355)
292 1u0j_A DNA replication protein 96.6 0.0018 6.2E-08 52.8 4.3 29 29-57 102-130 (267)
293 1z2a_A RAS-related protein RAB 96.6 0.0013 4.5E-08 48.7 3.2 24 30-53 4-27 (168)
294 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0005 1.7E-08 58.1 0.8 36 20-55 160-195 (330)
295 3dm5_A SRP54, signal recogniti 96.5 0.0015 5.2E-08 57.2 3.8 26 30-55 99-124 (443)
296 1kao_A RAP2A; GTP-binding prot 96.5 0.0015 5.1E-08 48.3 3.3 23 31-53 3-25 (167)
297 2gj8_A MNME, tRNA modification 96.5 0.0014 4.7E-08 49.5 3.1 25 30-54 3-27 (172)
298 3jvv_A Twitching mobility prot 96.5 0.0018 6E-08 55.3 4.0 24 32-55 124-147 (356)
299 3pxi_A Negative regulator of g 96.5 0.0028 9.5E-08 59.4 5.7 34 30-63 200-243 (758)
300 1oix_A RAS-related protein RAB 96.5 0.0013 4.5E-08 50.6 3.0 24 31-54 29-52 (191)
301 2lkc_A Translation initiation 96.5 0.002 6.8E-08 48.4 3.9 25 29-53 6-30 (178)
302 1a5t_A Delta prime, HOLB; zinc 96.5 0.0035 1.2E-07 52.8 5.9 41 17-58 11-51 (334)
303 2atv_A RERG, RAS-like estrogen 96.5 0.0017 6E-08 49.8 3.7 28 27-54 24-51 (196)
304 2f9l_A RAB11B, member RAS onco 96.5 0.0015 5.2E-08 50.4 3.3 24 31-54 5-28 (199)
305 3nh6_A ATP-binding cassette SU 96.5 0.0006 2E-08 57.0 1.0 35 21-55 70-104 (306)
306 2hxs_A RAB-26, RAS-related pro 96.5 0.0018 6.2E-08 48.6 3.7 26 29-54 4-29 (178)
307 2dr3_A UPF0273 protein PH0284; 96.5 0.0014 4.7E-08 52.2 3.2 35 28-62 20-59 (247)
308 2wsm_A Hydrogenase expression/ 96.5 0.0017 5.9E-08 50.9 3.7 27 29-55 28-54 (221)
309 2dyk_A GTP-binding protein; GT 96.5 0.0017 5.7E-08 47.9 3.4 23 32-54 2-24 (161)
310 1g29_1 MALK, maltose transport 96.5 0.00099 3.4E-08 57.2 2.4 33 23-55 21-53 (372)
311 2bme_A RAB4A, RAS-related prot 96.5 0.0014 4.8E-08 49.7 3.0 27 28-54 7-33 (186)
312 2bbs_A Cystic fibrosis transme 96.5 0.0013 4.3E-08 54.6 2.9 30 26-55 59-88 (290)
313 3d31_A Sulfate/molybdate ABC t 96.5 0.00075 2.6E-08 57.4 1.5 35 21-55 16-50 (348)
314 1sxj_B Activator 1 37 kDa subu 96.5 0.0033 1.1E-07 52.1 5.5 22 34-55 45-66 (323)
315 1vg8_A RAS-related protein RAB 96.5 0.0016 5.4E-08 50.3 3.3 27 28-54 5-31 (207)
316 1j8m_F SRP54, signal recogniti 96.5 0.0034 1.2E-07 52.1 5.5 25 31-55 98-122 (297)
317 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0018 6.3E-08 57.1 3.9 32 24-55 131-162 (460)
318 2qen_A Walker-type ATPase; unk 96.5 0.0024 8.1E-08 53.5 4.5 33 32-64 32-64 (350)
319 2ce2_X GTPase HRAS; signaling 96.5 0.0016 5.5E-08 48.0 3.0 24 31-54 3-26 (166)
320 3t5g_A GTP-binding protein RHE 96.5 0.0012 4E-08 49.9 2.3 25 29-53 4-28 (181)
321 3gd7_A Fusion complex of cysti 96.5 0.0012 4.1E-08 57.0 2.6 34 21-54 37-70 (390)
322 1r6b_X CLPA protein; AAA+, N-t 96.5 0.002 6.8E-08 60.4 4.3 28 33-60 490-517 (758)
323 3sop_A Neuronal-specific septi 96.4 0.0015 5E-08 53.6 3.0 24 32-55 3-26 (270)
324 2pjz_A Hypothetical protein ST 96.4 0.0015 5.2E-08 53.3 3.1 31 23-54 23-53 (263)
325 1upt_A ARL1, ADP-ribosylation 96.4 0.0023 8E-08 47.6 3.9 25 29-53 5-29 (171)
326 1nlf_A Regulatory protein REPA 96.4 0.0014 5E-08 53.6 2.9 26 29-54 28-53 (279)
327 1g8p_A Magnesium-chelatase 38 96.4 0.0011 3.9E-08 55.7 2.3 23 34-56 48-70 (350)
328 2hf9_A Probable hydrogenase ni 96.4 0.002 7E-08 50.6 3.7 27 29-55 36-62 (226)
329 2xkx_A Disks large homolog 4; 96.4 0.04 1.4E-06 51.3 12.9 25 29-56 529-553 (721)
330 1u8z_A RAS-related protein RAL 96.4 0.0018 6.2E-08 47.8 3.2 25 30-54 3-27 (168)
331 1xx6_A Thymidine kinase; NESG, 96.4 0.0028 9.7E-08 49.1 4.4 28 28-55 5-32 (191)
332 2nzj_A GTP-binding protein REM 96.4 0.0019 6.5E-08 48.3 3.3 24 30-53 3-26 (175)
333 1pui_A ENGB, probable GTP-bind 96.4 0.0011 3.6E-08 51.6 1.9 27 27-53 22-48 (210)
334 2oil_A CATX-8, RAS-related pro 96.4 0.0018 6.3E-08 49.5 3.3 28 27-54 21-48 (193)
335 2oap_1 GSPE-2, type II secreti 96.4 0.00097 3.3E-08 59.7 1.9 36 20-55 249-284 (511)
336 3kkq_A RAS-related protein M-R 96.4 0.0022 7.4E-08 48.5 3.6 27 28-54 15-41 (183)
337 1ypw_A Transitional endoplasmi 96.4 0.0008 2.7E-08 63.6 1.3 34 29-62 509-542 (806)
338 2zej_A Dardarin, leucine-rich 96.4 0.0016 5.4E-08 49.7 2.8 22 32-53 3-24 (184)
339 1ojl_A Transcriptional regulat 96.4 0.0027 9.1E-08 52.9 4.3 27 29-55 23-49 (304)
340 1svi_A GTP-binding protein YSX 96.4 0.0023 7.8E-08 48.9 3.6 25 29-53 21-45 (195)
341 3oes_A GTPase rhebl1; small GT 96.4 0.0018 6.2E-08 50.0 3.0 28 27-54 20-47 (201)
342 1p9r_A General secretion pathw 96.4 0.0024 8.4E-08 55.6 4.1 28 29-56 165-192 (418)
343 1c1y_A RAS-related protein RAP 96.4 0.002 6.9E-08 47.7 3.2 23 31-53 3-25 (167)
344 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0018 6.3E-08 49.2 3.0 27 28-54 4-30 (184)
345 1nrj_B SR-beta, signal recogni 96.4 0.0025 8.7E-08 49.7 3.9 27 29-55 10-36 (218)
346 1zcb_A G alpha I/13; GTP-bindi 96.3 0.0022 7.4E-08 54.9 3.5 42 14-55 16-57 (362)
347 1ek0_A Protein (GTP-binding pr 96.3 0.0019 6.3E-08 48.0 2.8 24 31-54 3-26 (170)
348 1oxx_K GLCV, glucose, ABC tran 96.3 0.00081 2.8E-08 57.3 0.8 34 22-55 22-55 (353)
349 1pzn_A RAD51, DNA repair and r 96.3 0.0018 6E-08 55.1 2.9 29 27-55 127-155 (349)
350 4dsu_A GTPase KRAS, isoform 2B 96.3 0.002 6.8E-08 48.8 2.9 25 30-54 3-27 (189)
351 3bc1_A RAS-related protein RAB 96.3 0.0022 7.4E-08 48.7 3.2 25 29-53 9-33 (195)
352 1z08_A RAS-related protein RAB 96.3 0.0021 7.1E-08 47.8 3.0 25 30-54 5-29 (170)
353 1gwn_A RHO-related GTP-binding 96.3 0.002 7E-08 50.2 3.0 28 27-54 24-51 (205)
354 3q72_A GTP-binding protein RAD 96.3 0.0022 7.7E-08 47.5 3.1 22 31-52 2-23 (166)
355 1moz_A ARL1, ADP-ribosylation 96.3 0.0017 5.6E-08 49.1 2.4 25 28-52 15-39 (183)
356 2y8e_A RAB-protein 6, GH09086P 96.3 0.0018 6.1E-08 48.5 2.5 26 28-53 11-36 (179)
357 2j37_W Signal recognition part 96.3 0.0044 1.5E-07 55.2 5.4 27 29-55 99-125 (504)
358 2erx_A GTP-binding protein DI- 96.3 0.0024 8.2E-08 47.4 3.2 23 31-53 3-25 (172)
359 3pqc_A Probable GTP-binding pr 96.3 0.0029 1E-07 48.1 3.7 26 29-54 21-46 (195)
360 3b5x_A Lipid A export ATP-bind 96.3 0.0017 5.9E-08 59.0 2.7 36 20-55 358-393 (582)
361 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0021 7.3E-08 53.9 3.0 33 30-62 122-156 (331)
362 2j1l_A RHO-related GTP-binding 96.3 0.0023 7.7E-08 50.1 3.0 25 29-53 32-56 (214)
363 1r2q_A RAS-related protein RAB 96.3 0.0017 5.7E-08 48.2 2.2 24 30-53 5-28 (170)
364 3ihw_A Centg3; RAS, centaurin, 96.2 0.0032 1.1E-07 48.0 3.8 26 28-53 17-42 (184)
365 1yrb_A ATP(GTP)binding protein 96.2 0.0034 1.2E-07 50.6 4.0 27 29-55 12-38 (262)
366 1g16_A RAS-related protein SEC 96.2 0.0025 8.6E-08 47.3 3.0 23 31-53 3-25 (170)
367 1z0j_A RAB-22, RAS-related pro 96.2 0.0023 7.8E-08 47.5 2.8 25 30-54 5-29 (170)
368 2o52_A RAS-related protein RAB 96.2 0.0021 7.3E-08 49.7 2.7 30 24-53 18-47 (200)
369 3con_A GTPase NRAS; structural 96.2 0.0024 8.2E-08 48.6 3.0 25 30-54 20-44 (190)
370 2v3c_C SRP54, signal recogniti 96.2 0.0024 8.2E-08 55.9 3.3 26 30-55 98-123 (432)
371 2p5s_A RAS and EF-hand domain 96.2 0.0031 1.1E-07 48.6 3.6 27 28-54 25-51 (199)
372 2dpy_A FLII, flagellum-specifi 96.2 0.0041 1.4E-07 54.6 4.6 36 20-56 147-182 (438)
373 3q85_A GTP-binding protein REM 96.2 0.0029 1E-07 47.0 3.3 22 32-53 3-24 (169)
374 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0024 8.1E-08 47.9 2.8 24 30-53 6-29 (177)
375 2a9k_A RAS-related protein RAL 96.2 0.0028 9.5E-08 47.8 3.2 26 29-54 16-41 (187)
376 1x3s_A RAS-related protein RAB 96.2 0.0019 6.7E-08 49.2 2.3 27 28-54 12-38 (195)
377 3hr8_A Protein RECA; alpha and 96.2 0.0026 9E-08 54.2 3.2 27 29-55 59-85 (356)
378 2gf0_A GTP-binding protein DI- 96.2 0.0035 1.2E-07 47.9 3.7 25 29-53 6-30 (199)
379 2j0v_A RAC-like GTP-binding pr 96.2 0.0033 1.1E-07 48.8 3.5 28 26-53 4-31 (212)
380 2bov_A RAla, RAS-related prote 96.2 0.0033 1.1E-07 48.4 3.5 26 29-54 12-37 (206)
381 2efe_B Small GTP-binding prote 96.2 0.0028 9.5E-08 47.7 3.0 25 29-53 10-34 (181)
382 3kta_A Chromosome segregation 96.2 0.0038 1.3E-07 47.4 3.8 24 33-56 28-51 (182)
383 1ksh_A ARF-like protein 2; sma 96.2 0.0033 1.1E-07 47.6 3.4 25 29-53 16-40 (186)
384 4gzl_A RAS-related C3 botulinu 96.2 0.0031 1E-07 48.9 3.2 26 28-53 27-52 (204)
385 3lxx_A GTPase IMAP family memb 96.2 0.0029 9.9E-08 50.4 3.2 26 29-54 27-52 (239)
386 1z0f_A RAB14, member RAS oncog 96.2 0.0031 1.1E-07 47.2 3.2 26 29-54 13-38 (179)
387 1ega_A Protein (GTP-binding pr 96.2 0.0027 9.2E-08 52.8 3.0 26 28-53 5-30 (301)
388 2bcg_Y Protein YP2, GTP-bindin 96.2 0.0028 9.4E-08 49.1 3.0 25 29-53 6-30 (206)
389 2g6b_A RAS-related protein RAB 96.1 0.003 1E-07 47.5 3.0 26 29-54 8-33 (180)
390 1m2o_B GTP-binding protein SAR 96.1 0.0031 1E-07 48.3 3.1 25 29-53 21-45 (190)
391 1zd9_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 48.1 3.1 25 29-53 20-44 (188)
392 2rcn_A Probable GTPase ENGC; Y 96.1 0.0033 1.1E-07 53.6 3.5 25 30-54 214-238 (358)
393 3k1j_A LON protease, ATP-depen 96.1 0.0021 7.1E-08 58.7 2.4 27 30-56 59-85 (604)
394 3tkl_A RAS-related protein RAB 96.1 0.0034 1.2E-07 47.9 3.2 25 29-53 14-38 (196)
395 2xxa_A Signal recognition part 96.1 0.0074 2.5E-07 52.8 5.7 40 16-55 78-124 (433)
396 1tq4_A IIGP1, interferon-induc 96.1 0.0017 6E-08 56.4 1.6 24 30-53 68-91 (413)
397 3c5c_A RAS-like protein 12; GD 96.1 0.0036 1.2E-07 47.8 3.3 26 29-54 19-44 (187)
398 3k53_A Ferrous iron transport 96.1 0.0033 1.1E-07 51.3 3.2 24 31-54 3-26 (271)
399 1ls1_A Signal recognition part 96.1 0.0042 1.4E-07 51.5 3.9 26 30-55 97-122 (295)
400 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0036 1.2E-07 47.2 3.2 24 30-53 4-27 (186)
401 1zj6_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 47.5 3.3 25 29-53 14-38 (187)
402 4bas_A ADP-ribosylation factor 96.1 0.0033 1.1E-07 48.1 3.0 26 28-53 14-39 (199)
403 2obl_A ESCN; ATPase, hydrolase 96.1 0.0035 1.2E-07 53.2 3.4 36 20-56 61-96 (347)
404 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.0016 5.4E-08 58.1 1.3 25 32-56 42-66 (500)
405 3def_A T7I23.11 protein; chlor 96.1 0.0057 2E-07 49.6 4.5 38 17-54 22-59 (262)
406 2qu8_A Putative nucleolar GTP- 96.0 0.0046 1.6E-07 48.8 3.8 25 29-53 27-51 (228)
407 3pxi_A Negative regulator of g 96.0 0.0045 1.5E-07 58.0 4.3 33 33-65 523-560 (758)
408 2b6h_A ADP-ribosylation factor 96.0 0.004 1.4E-07 47.8 3.3 25 29-53 27-51 (192)
409 2yv5_A YJEQ protein; hydrolase 96.0 0.0041 1.4E-07 51.8 3.6 25 30-55 164-188 (302)
410 1z06_A RAS-related protein RAB 96.0 0.004 1.4E-07 47.4 3.3 25 29-53 18-42 (189)
411 1r8s_A ADP-ribosylation factor 96.0 0.0047 1.6E-07 45.6 3.6 22 33-54 2-23 (164)
412 2zts_A Putative uncharacterize 96.0 0.0037 1.3E-07 49.8 3.2 25 29-53 28-52 (251)
413 3ozx_A RNAse L inhibitor; ATP 96.0 0.0036 1.2E-07 56.3 3.4 29 27-55 21-49 (538)
414 2a5j_A RAS-related protein RAB 96.0 0.004 1.4E-07 47.5 3.2 25 29-53 19-43 (191)
415 3t1o_A Gliding protein MGLA; G 96.0 0.0031 1.1E-07 48.0 2.6 27 29-55 12-38 (198)
416 2fh5_B SR-beta, signal recogni 96.0 0.0044 1.5E-07 48.2 3.4 26 29-54 5-30 (214)
417 3lda_A DNA repair protein RAD5 96.0 0.0033 1.1E-07 54.4 2.9 24 29-52 176-199 (400)
418 2fu5_C RAS-related protein RAB 96.0 0.0023 7.8E-08 48.4 1.7 25 29-53 6-30 (183)
419 3a1s_A Iron(II) transport prot 96.0 0.0034 1.2E-07 51.0 2.8 25 29-53 3-27 (258)
420 1tf7_A KAIC; homohexamer, hexa 96.0 0.0038 1.3E-07 56.0 3.3 32 20-51 27-59 (525)
421 1qvr_A CLPB protein; coiled co 96.0 0.0031 1.1E-07 59.9 2.9 24 32-55 192-215 (854)
422 2xtp_A GTPase IMAP family memb 96.0 0.0042 1.4E-07 50.1 3.3 26 29-54 20-45 (260)
423 3reg_A RHO-like small GTPase; 96.0 0.0038 1.3E-07 47.7 3.0 27 28-54 20-46 (194)
424 2q3h_A RAS homolog gene family 96.0 0.0046 1.6E-07 47.5 3.4 27 27-53 16-42 (201)
425 1v5w_A DMC1, meiotic recombina 96.0 0.0048 1.6E-07 52.3 3.7 26 29-54 120-145 (343)
426 1h65_A Chloroplast outer envel 96.0 0.0067 2.3E-07 49.4 4.5 37 18-54 26-62 (270)
427 2cxx_A Probable GTP-binding pr 96.0 0.0039 1.3E-07 47.3 2.9 22 32-53 2-23 (190)
428 1jwy_B Dynamin A GTPase domain 95.9 0.0052 1.8E-07 51.0 3.9 26 29-54 22-47 (315)
429 2h17_A ADP-ribosylation factor 95.9 0.0037 1.3E-07 47.3 2.7 26 29-54 19-44 (181)
430 1nij_A Hypothetical protein YJ 95.9 0.0032 1.1E-07 52.7 2.6 24 31-54 4-27 (318)
431 1f6b_A SAR1; gtpases, N-termin 95.9 0.004 1.4E-07 48.0 3.0 32 21-53 16-47 (198)
432 2zr9_A Protein RECA, recombina 95.9 0.0041 1.4E-07 52.9 3.2 35 29-63 59-98 (349)
433 3iev_A GTP-binding protein ERA 95.9 0.0039 1.4E-07 51.9 3.0 28 27-54 6-33 (308)
434 2ew1_A RAS-related protein RAB 95.9 0.0043 1.5E-07 48.2 2.9 26 29-54 24-49 (201)
435 3lxw_A GTPase IMAP family memb 95.9 0.0048 1.6E-07 49.7 3.2 26 29-54 19-44 (247)
436 2fg5_A RAB-22B, RAS-related pr 95.9 0.004 1.4E-07 47.6 2.6 26 29-54 21-46 (192)
437 3j16_B RLI1P; ribosome recycli 95.8 0.0057 1.9E-07 55.9 3.9 29 27-55 99-127 (608)
438 2fv8_A H6, RHO-related GTP-bin 95.8 0.0038 1.3E-07 48.4 2.5 25 29-53 23-47 (207)
439 3qf4_B Uncharacterized ABC tra 95.8 0.0018 6.1E-08 59.1 0.6 35 21-55 371-405 (598)
440 2gf9_A RAS-related protein RAB 95.8 0.0052 1.8E-07 46.7 3.2 25 30-54 21-45 (189)
441 3dz8_A RAS-related protein RAB 95.8 0.0055 1.9E-07 46.8 3.3 26 30-55 22-47 (191)
442 3cph_A RAS-related protein SEC 95.8 0.0057 1.9E-07 47.3 3.4 25 29-53 18-42 (213)
443 1qvr_A CLPB protein; coiled co 95.8 0.0051 1.7E-07 58.4 3.7 24 32-55 589-612 (854)
444 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0055 1.9E-07 55.1 3.7 29 27-55 43-71 (538)
445 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0067 2.3E-07 44.9 3.6 22 31-52 23-44 (149)
446 1u0l_A Probable GTPase ENGC; p 95.8 0.0054 1.9E-07 50.9 3.4 24 30-53 168-191 (301)
447 1w5s_A Origin recognition comp 95.8 0.0078 2.7E-07 51.6 4.5 26 30-55 49-76 (412)
448 2j9r_A Thymidine kinase; TK1, 95.8 0.0088 3E-07 47.1 4.3 28 28-55 25-52 (214)
449 2h57_A ADP-ribosylation factor 95.8 0.0041 1.4E-07 47.4 2.4 26 29-54 19-44 (190)
450 3cbq_A GTP-binding protein REM 95.8 0.0044 1.5E-07 47.7 2.5 23 30-52 22-44 (195)
451 2z43_A DNA repair and recombin 95.8 0.0048 1.6E-07 51.8 2.9 27 29-55 105-131 (324)
452 3llu_A RAS-related GTP-binding 95.7 0.0046 1.6E-07 47.5 2.6 27 28-54 17-43 (196)
453 2fna_A Conserved hypothetical 95.7 0.013 4.3E-07 49.1 5.5 31 32-62 31-63 (357)
454 1u94_A RECA protein, recombina 95.7 0.0062 2.1E-07 51.9 3.5 34 29-62 61-99 (356)
455 3cpj_B GTP-binding protein YPT 95.7 0.0057 2E-07 48.0 3.1 28 27-54 9-36 (223)
456 2il1_A RAB12; G-protein, GDP, 95.7 0.0055 1.9E-07 46.9 2.9 23 31-53 26-48 (192)
457 1zbd_A Rabphilin-3A; G protein 95.7 0.0066 2.3E-07 46.7 3.3 25 30-54 7-31 (203)
458 2ffh_A Protein (FFH); SRP54, s 95.7 0.0073 2.5E-07 52.7 3.8 26 30-55 97-122 (425)
459 2x77_A ADP-ribosylation factor 95.7 0.0045 1.6E-07 47.0 2.3 24 29-52 20-43 (189)
460 3b60_A Lipid A export ATP-bind 95.7 0.0051 1.8E-07 55.9 2.9 35 21-55 359-393 (582)
461 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0079 2.7E-07 56.3 4.2 26 30-55 206-231 (758)
462 3bh0_A DNAB-like replicative h 95.6 0.0093 3.2E-07 49.8 4.2 27 29-55 66-92 (315)
463 3euj_A Chromosome partition pr 95.6 0.0063 2.1E-07 53.9 3.2 30 25-55 24-53 (483)
464 2cjw_A GTP-binding protein GEM 95.6 0.0075 2.6E-07 46.3 3.3 24 31-54 6-29 (192)
465 3kfv_A Tight junction protein 95.6 0.051 1.7E-06 45.2 8.5 87 34-154 148-236 (308)
466 2i1q_A DNA repair and recombin 95.6 0.006 2E-07 51.0 2.9 26 29-54 96-121 (322)
467 2gco_A H9, RHO-related GTP-bin 95.6 0.0063 2.2E-07 46.9 2.8 25 30-54 24-48 (201)
468 2atx_A Small GTP binding prote 95.6 0.0046 1.6E-07 47.2 2.0 25 30-54 17-41 (194)
469 2f7s_A C25KG, RAS-related prot 95.6 0.007 2.4E-07 47.1 3.0 25 29-53 23-47 (217)
470 3q3j_B RHO-related GTP-binding 95.6 0.0085 2.9E-07 46.8 3.5 26 29-54 25-50 (214)
471 3upu_A ATP-dependent DNA helic 95.6 0.016 5.4E-07 51.0 5.6 23 33-55 47-69 (459)
472 2yl4_A ATP-binding cassette SU 95.6 0.0055 1.9E-07 55.8 2.7 35 21-55 360-394 (595)
473 3b1v_A Ferrous iron uptake tra 95.6 0.0079 2.7E-07 49.2 3.4 24 31-54 3-26 (272)
474 2r6a_A DNAB helicase, replicat 95.6 0.011 3.8E-07 52.0 4.5 27 29-55 201-227 (454)
475 3iby_A Ferrous iron transport 95.5 0.0072 2.5E-07 49.0 3.0 23 32-54 2-24 (256)
476 1ni3_A YCHF GTPase, YCHF GTP-b 95.5 0.0087 3E-07 51.6 3.6 27 27-53 16-42 (392)
477 4dhe_A Probable GTP-binding pr 95.5 0.0044 1.5E-07 48.5 1.6 26 29-54 27-52 (223)
478 2hup_A RAS-related protein RAB 95.5 0.0071 2.4E-07 46.7 2.8 25 29-53 27-51 (201)
479 3shw_A Tight junction protein 95.5 0.039 1.3E-06 48.6 7.7 32 27-61 220-251 (468)
480 3i8s_A Ferrous iron transport 95.5 0.0082 2.8E-07 49.1 3.3 24 31-54 3-26 (274)
481 2r8r_A Sensor protein; KDPD, P 95.5 0.013 4.4E-07 46.6 4.2 34 30-63 5-43 (228)
482 2aka_B Dynamin-1; fusion prote 95.5 0.013 4.5E-07 48.0 4.5 26 29-54 24-49 (299)
483 1ko7_A HPR kinase/phosphatase; 95.4 0.009 3.1E-07 49.9 3.4 32 31-63 144-175 (314)
484 1t9h_A YLOQ, probable GTPase E 95.4 0.0028 9.6E-08 52.9 0.3 25 29-53 171-195 (307)
485 3bk7_A ABC transporter ATP-bin 95.4 0.0085 2.9E-07 54.7 3.4 29 27-55 113-141 (607)
486 2qnr_A Septin-2, protein NEDD5 95.4 0.0073 2.5E-07 50.2 2.7 23 31-53 18-40 (301)
487 2yc2_C IFT27, small RAB-relate 95.4 0.0038 1.3E-07 48.0 0.9 24 30-53 19-42 (208)
488 3ozx_A RNAse L inhibitor; ATP 95.4 0.0077 2.6E-07 54.2 3.0 27 29-55 292-318 (538)
489 1z6t_A APAF-1, apoptotic prote 95.4 0.019 6.4E-07 51.9 5.6 25 29-53 145-169 (591)
490 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0095 3.2E-07 53.6 3.5 27 29-55 310-336 (538)
491 1knx_A Probable HPR(Ser) kinas 95.4 0.0076 2.6E-07 50.3 2.7 33 31-64 147-179 (312)
492 2g3y_A GTP-binding protein GEM 95.3 0.011 3.7E-07 46.4 3.3 24 30-53 36-59 (211)
493 3bk7_A ABC transporter ATP-bin 95.3 0.01 3.4E-07 54.2 3.5 27 29-55 380-406 (607)
494 2gno_A DNA polymerase III, gam 95.3 0.015 5E-07 48.4 4.2 24 31-54 18-41 (305)
495 3e1s_A Exodeoxyribonuclease V, 95.3 0.012 4.1E-07 53.4 3.9 25 31-55 204-228 (574)
496 4a82_A Cystic fibrosis transme 95.3 0.0055 1.9E-07 55.6 1.6 34 22-55 358-391 (578)
497 2e87_A Hypothetical protein PH 95.2 0.016 5.6E-07 49.1 4.5 26 29-54 165-190 (357)
498 3gj0_A GTP-binding nuclear pro 95.2 0.01 3.5E-07 46.4 3.0 28 28-55 12-40 (221)
499 1mky_A Probable GTP-binding pr 95.2 0.012 4.3E-07 51.4 3.7 25 30-54 179-203 (439)
500 3r7w_A Gtpase1, GTP-binding pr 95.2 0.012 4E-07 49.0 3.3 25 30-54 2-26 (307)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=2.9e-44 Score=287.45 Aligned_cols=204 Identities=50% Similarity=0.869 Sum_probs=193.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|||||||+|+|+.|+++||++|||+++++|+++..++++|..++.++..|..+|++++..++..++.. .++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~---~~~ 77 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGN 77 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS---SSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc---CCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998754 358
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||||++..|+..|...+...+..++.+|+|+||++++++|+..|++|+.||+.||..|+||. |+.++.+|
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~~l~~r 150 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQR 150 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTCCCBCC
T ss_pred eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCceeccc
Confidence 99999999999999999998888889999999999999999999999999999999999999996 55778899
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
.+|+.+.+++|++.|++.+.++.+||.+.+.++.|||++++++|++.|.++|.+
T Consensus 151 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 151 EDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp GGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999998864
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=8.8e-45 Score=292.78 Aligned_cols=212 Identities=45% Similarity=0.833 Sum_probs=183.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
.-|...|+|+|||||||+|+.|+++||+++|++++++++.+..++++|+.+.+++..|..+|++++..++.+++....+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999887667
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
+|||+||||++..|+..|. ..+..|+.+|+|+||++++++|+.+|++|+.||+.||..|+||..+++|+.|+++|.
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~----~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~ 162 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMK----EAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLV 162 (230)
T ss_dssp TCEEEESCCCSHHHHHHHH----HTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred CCeEecCCCCcHHHHHHHH----HhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccc
Confidence 8999999999999998765 345788999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----------CcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKK-----------GVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-----------~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
+|++|+++.+++|++.|++.+.++.+||.+. +.++.|||++++++|++.|.++|.+
T Consensus 163 ~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 163 QRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999973 7899999999999999999988754
No 3
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=7e-43 Score=286.95 Aligned_cols=237 Identities=49% Similarity=0.894 Sum_probs=222.7
Q ss_pred cCCCChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC
Q 025970 8 LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG 87 (245)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~ 87 (245)
++..+..+++.++++++.....+|++|+|+|+|||||||+|+.|++++|++++++++++++....+++.|..+.+++..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g 85 (243)
T 3tlx_A 6 LENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEG 85 (243)
T ss_dssp ---CCHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTT
T ss_pred hhhcchHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcC
Confidence 45778999999999999877778999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcc
Q 025970 88 ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRS 167 (245)
Q Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~ 167 (245)
..+++..+..++..++....+.++||+||||++..+...|...+...+..|+.+|+|++|++++.+|+.+|+.|+.||+.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~ 165 (243)
T 3tlx_A 86 KLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRI 165 (243)
T ss_dssp CCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEE
T ss_pred CCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcc
Confidence 99999999999999888766678999999999999999998888878888999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 168 YHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 168 y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
||..|+||+.++.|+.|++++.+|.+++.+.+++|+..|++.+.++.+||...+.++.||++.+++++++.|.++|.
T Consensus 166 y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 166 YHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp EETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999875
No 4
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=3.1e-39 Score=260.42 Aligned_cols=213 Identities=46% Similarity=0.814 Sum_probs=202.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|+|||||||+++.|++++|++++++|+++++....+++.+..+.+++..|..+++..+..++...+.......+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988887666789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
+|+||+|.+..+...+...+...+..|+.+|+|++|++++.+|+..|+.|+.||+.||..|+||+.++.|+.|+.++.+|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 99999999999999888887777788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+++.+.+++|+..|++.+.++.+||.+.+.++.||++.+++++++.|.+.|+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999876
No 5
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=1.1e-38 Score=257.09 Aligned_cols=214 Identities=45% Similarity=0.826 Sum_probs=202.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|+|||||||+++.|++++|++++++|+++++....+++.+..+.+++..|..+++..+..++...+.......+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988877666789
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
+|+||+|.+..+...+...+...+..|+.+|+|++|++++.+|+.+|+.|+.+|+.||..|+||..++.|+.|+.++.+|
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 99999999999999888887777788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
.+++.+.+++|+..|++.+.++.+||.+.+.++.||++.+++++++.|.+.|.+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888899999999999999999998753
No 6
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.4e-38 Score=254.09 Aligned_cols=215 Identities=50% Similarity=0.906 Sum_probs=196.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.++++|+|+|+|||||||+++.|++.+|++++++|+++++....+++.|..+.+++..|..++++....++..++.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 45689999999999999999999999999999999999998888899999999999999999999998888888877666
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
+.+||+||||++..+...+..++...+..|+.+|+|++|++++.+|+..|..++.+|+.||..|+||+.++.|+.|++++
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 162 (217)
T 3be4_A 83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPL 162 (217)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccc
Confidence 78999999999998888877666666678999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
..+.++..+.+++|+..|++...++.++|.+.+.++.||++.+++++++.|.+.|
T Consensus 163 ~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 163 VWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999987778999999999999999998764
No 7
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=7.4e-38 Score=251.56 Aligned_cols=187 Identities=29% Similarity=0.511 Sum_probs=168.1
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP- 106 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~- 106 (245)
.+++++|+|+|||||||+|+|+.|+++||+++||+++++|+++..++++|..+..++..|..+|++++..++..++...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999988664
Q ss_pred CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
...+|||+||||++..|+..|... ...++.+|+|+||++++.+|+..|..
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~----~~~~~~vi~l~v~~e~~~~Rl~~R~~-------------------------- 155 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKE----VCPCLCVINFDVSEEVMRKRLLKRAE-------------------------- 155 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHSCC----------------------------
T ss_pred ccccCcccccCCCcHHHHHHHHHh----CCccCEEEeccCCHHHHHHHHhcccc--------------------------
Confidence 345799999999999999987754 36789999999999999999999862
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
+.+|.+|+++.+++|++.|++.+.++.+||.+.+.++.|||++++++|++.|.+.|+.
T Consensus 156 -~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 156 -TSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred -cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 2347788999999999999999999999999999999999999999999999998863
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=2.3e-36 Score=246.53 Aligned_cols=216 Identities=52% Similarity=0.947 Sum_probs=198.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.++++|+|+|+|||||||+++.|++++++.++++++++++....+++.+..+.+++..|..++++.+..++..++.....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 45789999999999999999999999999999999999998888899999999999999999999999999888876555
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
+.+||+||||++..+...|.+++...+..|+.+|+|++|++++.+|+..|..|+.+|+.||..|.||..++.++.|++++
T Consensus 94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 173 (233)
T 1ak2_A 94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL 173 (233)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence 67899999999998888777776655667899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..|.++..+.+++|+..|++...++.++|...+.++.||++.+++++++.|.+.|.
T Consensus 174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~ 229 (233)
T 1ak2_A 174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229 (233)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877779999999999999999998774
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=4.5e-36 Score=242.66 Aligned_cols=216 Identities=55% Similarity=0.946 Sum_probs=193.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK-KPS 107 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~~~ 107 (245)
+++++|+|+|+|||||||+++.|++.+++.++++|+++++....+++.|..+.+++..|..+++..+..++..++. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999999999888889999999999999999999998888888776 433
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+.+||+||||++..+...|.+++...+..|+++|+|++|++++++|+..|..++.+|+.||..|+||+.+..++..+++
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~ 161 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA 161 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence 45789999999999888888777666677899999999999999999999999999999999999999887544444568
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+..|.+++.+.+++|+..|++...++.++|.+.+.++.||++.+++++++.|.+.|.
T Consensus 162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 888988899999999999999999999999877789999999999999999998875
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=5e-36 Score=241.43 Aligned_cols=209 Identities=44% Similarity=0.842 Sum_probs=190.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|.|+|+|+|||||||+++.|++.+|+.++++|+++++.+..+++.|..+.+++..|..+++..+..++..++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 57999999999999999999999999999999999998888899999999999999999999999999888876544578
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~ 191 (245)
||+||+|++..+...|. ..+..|+.+|+|++|++++++|+..|..++.+|+.||..|.||+.++.|+.|+++|..|
T Consensus 81 ~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r 156 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR 156 (214)
T ss_dssp EEEESCCCSHHHHHHHH----HTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred EEEeCCCCCHHHHHHHH----hcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccC
Confidence 99999999988776543 34567899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----CcEEEEeCCCChhHHHHHHHHhhc
Q 025970 192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKK-----GVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-----~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+++.+.+++|+..|++.+.++.++|.+. +.++.||++.+++++++.|.+.|+
T Consensus 157 ~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l~ 214 (214)
T 1e4v_A 157 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214 (214)
T ss_dssp TTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999864 579999999999999999998763
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=5.6e-36 Score=242.78 Aligned_cols=212 Identities=32% Similarity=0.567 Sum_probs=190.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
|+|+|+|+|||||||+++.|++.+|++++++|+++++....+++.|..+.+++..|..+++..+..++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence 5799999999999999999999999999999999999877788899999999999999999988888877765433 568
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC-CCccccccCCCCCCCC-CCCCCCCccc
Q 025970 112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA-SGRSYHTKFAPPKVHG-FDDVTGEPLI 189 (245)
Q Consensus 112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~-~~~~y~~~~~~p~~~~-~~~~~~~~l~ 189 (245)
+|+||+|++..+...+..++...+..|+.+|+|++|++++.+|+.+|..++. ||+.||..|+||..++ .|+.|++++.
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~ 159 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALS 159 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccc
Confidence 9999999998888877766555667899999999999999999999988877 9999999999999888 9999999999
Q ss_pred cCCCCcHH-HHHHHHHHHHHhhHHHHH---HHHh-----cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 190 QRKDDTAQ-VLKSRLEAFHKQTEPVID---YYAK-----KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 190 ~~~~~~~~-~~~~rl~~~~~~~~~l~~---~~~~-----~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+.+++.+ .+++|+..|++.+.++.+ +|.. .+.++.||++.+++++++.|.+.|.
T Consensus 160 ~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l~ 223 (223)
T 2xb4_A 160 ARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223 (223)
T ss_dssp CCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 99988888 999999999999999999 8976 5679999999999999999998763
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=100.00 E-value=3e-33 Score=227.18 Aligned_cols=209 Identities=43% Similarity=0.755 Sum_probs=185.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.++++|+|+|+|||||||+++.|++.+|+.++++|++++.....+++.|..+.+++..|..+++.....++..++... .
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~ 83 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-T 83 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-c
Confidence 457899999999999999999999999999999999999988888899999999999998899888777777777653 3
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
..+||+|++|.+..+...+..+ ..++.+|+|++|++++.+|+..|..++.+|+.|+..+.||+.++.++.|++++
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l 158 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPL 158 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccc
Confidence 4689999999988776554432 46789999999999999999999888889999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..|.++..+.+++|+..|.+...++.++|.+.+.++.||++ +++++++.|.+.|.
T Consensus 159 ~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~ 213 (227)
T 1zd8_A 159 IQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQ 213 (227)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHH
Confidence 99988889999999999999999999999877789999999 99999999998875
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=100.00 E-value=2.7e-31 Score=214.81 Aligned_cols=206 Identities=34% Similarity=0.671 Sum_probs=176.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.++++|+|+|+|||||||+++.|++.+++.++++|++++.....++..|..+.+++..|..+++..+..++..++.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 45789999999999999999999999999999999999998888889999999999999999998888877766654322
Q ss_pred -CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 109 -EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 109 -~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
..++|+||+|++..+...+. ..+..|+++|+|++|++++.+|+..|..++.+|+.|+..|.||+.++.+ .+
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~----~~ 154 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SR 154 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG----GG
T ss_pred cCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccc----cc
Confidence 36899999999987666543 3456789999999999999999999999999999999999999876654 46
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+..+.++..+.+++|+..|+....++.++|.. .++.||++.+++++++.|.+.|.
T Consensus 155 l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~ 209 (222)
T 1zak_A 155 LTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLG 209 (222)
T ss_dssp CBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHH
Confidence 77777778889999999999988888887754 58899999999999999988764
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=8.5e-28 Score=191.33 Aligned_cols=185 Identities=38% Similarity=0.719 Sum_probs=159.8
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP 106 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~ 106 (245)
.+..|++|+|+|+|||||||+++.|++.+|++++++|+++++....++..+..+.+++..|..+++.....++..++...
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence 44678899999999999999999999999999999999999988888889999999999998899988888888777654
Q ss_pred CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
....++|+||+|.+..+...+..++...+..|+.+|+|++|++++.+|+..|.
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~--------------------------- 148 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG--------------------------- 148 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---------------------------
Confidence 44568999999999988888877776666778999999999999999999873
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+++++.+.+++|+..|.....++.++|. ..++.||++.+++++++.|.+.|+
T Consensus 149 ----r~~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 149 ----RADDTDDVILNRMKVYRDETAPLLEYYR--DQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp ----CTTCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred ----CCCCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 2345678888999999988888887773 467889999999999999998875
No 15
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=1.8e-26 Score=181.21 Aligned_cols=183 Identities=37% Similarity=0.679 Sum_probs=154.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
++++|+|+|+|||||||+++.|++.+|++++++|++++..+..+++.+..+.+++..|...++......+...+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~---- 78 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE---- 78 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence 5789999999999999999999999999999999999988788888999999999999888888888777766542
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
++|+||++.+..+...+..++.+.+..|+.+|+|++|++++.+|+..|... .
T Consensus 79 -~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~---------------------------~ 130 (186)
T 3cm0_A 79 -RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL---------------------------E 130 (186)
T ss_dssp -EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH---------------------------H
T ss_pred -CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc---------------------------C
Confidence 499999999988777776666665556899999999999999999887310 0
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
++.+++.+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 131 ~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 131 GRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 1345677888999999988888888888876678899999999999999998764
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.95 E-value=6.3e-26 Score=178.67 Aligned_cols=187 Identities=28% Similarity=0.449 Sum_probs=157.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
..+++|+|+|+|||||||+++.|++.+|++++++|++++.....+++.+..+.+++..|...++.....++...+... .
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~ 82 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-Q 82 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-T
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-C
Confidence 346799999999999999999999999999999999999887788889999999999998888888888777776554 4
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
+.++|+||+|....+...+...+.. +..|+++|+|++|++++.+|+..|...
T Consensus 83 ~~~vi~d~~~~~~~~~~~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~--------------------------- 134 (194)
T 1qf9_A 83 GKNFLVDGFPRNEENNNSWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGES--------------------------- 134 (194)
T ss_dssp TCCEEEETCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTT---------------------------
T ss_pred CCCEEEeCcCCCHHHHHHHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhcccc---------------------------
Confidence 5689999999998887776655432 236889999999999999999987420
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..+.++..+.+.+|+..|.+...++.++|...+.++.||++.+++++++.|.+.++
T Consensus 135 ~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~ 190 (194)
T 1qf9_A 135 SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK 190 (194)
T ss_dssp SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 01456678899999999999888988888877778899999999999999988774
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.95 E-value=7.2e-26 Score=178.95 Aligned_cols=185 Identities=36% Similarity=0.590 Sum_probs=152.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-C
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP-S 107 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~-~ 107 (245)
.++++|+|+|+|||||||+++.|++.+|++++++|++++.....+++.+..+.+++..|..++......++...+... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 356799999999999999999999999999999999999988778889999999998888888887777766655432 2
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+.++|+||+|....+...+...+ ..|+.+|+|++|++++.+|+..|....
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l~~~~e~~~~R~~~R~~~~------------------------- 137 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETMTQRLLKRGETS------------------------- 137 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHTSS-------------------------
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHccCCcC-------------------------
Confidence 457899999999987776655432 468899999999999999998874210
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+.+++.+.+.+|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 138 --~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~ 192 (196)
T 2c95_A 138 --GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192 (196)
T ss_dssp --SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence 1234467788899999999998888888876778899999999999999988764
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.94 E-value=2.3e-25 Score=175.73 Aligned_cols=187 Identities=26% Similarity=0.498 Sum_probs=150.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK---- 104 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~---- 104 (245)
+|++|+|+|+|||||||+++.|++.+|++++++|++++....+ ++.++..+..++..|...++.....++...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 3679999999999999999999999999999999999887654 56778888888888888888765555543332
Q ss_pred CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970 105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~ 184 (245)
....+.++|+||+|.+..+...+...+.. ...|+.+|+|++|++++.+|+..|...
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~----------------------- 137 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNNEICIERCLERGKS----------------------- 137 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHHT-----------------------
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECCHHHHHHHHHccccc-----------------------
Confidence 22235689999999998877666554432 246789999999999999999887420
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..|++++.+.+++++..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 138 ----~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 138 ----SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193 (196)
T ss_dssp ----SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 12456678888999999999999999999877778899999999999999998874
No 19
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.94 E-value=1.7e-25 Score=178.07 Aligned_cols=187 Identities=27% Similarity=0.543 Sum_probs=151.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH-cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK 105 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 105 (245)
.+.++++|+|+|+|||||||+++.|++.+|++++++|++++.... .++..+..+..++..|...++.....++...+..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~ 90 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD 90 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 345677999999999999999999999999999999999998754 5678888898888888888887766666554432
Q ss_pred C-CCC-CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCC
Q 025970 106 P-SCE-KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV 183 (245)
Q Consensus 106 ~-~~~-~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~ 183 (245)
. ..+ .+||+||+|++..+...+...+ ..|+++|+|++|++++.+|+..|...
T Consensus 91 ~l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i~l~~~~e~~~~Rl~~R~~~---------------------- 144 (203)
T 1ukz_A 91 NVKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPEDIMLERLLERGKT---------------------- 144 (203)
T ss_dssp HHHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHHH----------------------
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHhcccc----------------------
Confidence 1 122 5799999999988777665432 35899999999999999999887421
Q ss_pred CCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.++.+++.+.+++|+..|.+...++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 145 -----~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 145 -----SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp -----HCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 01235678889999999999999998888877788889999999999999998774
No 20
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=176.07 Aligned_cols=184 Identities=30% Similarity=0.545 Sum_probs=150.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP-SC 108 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~-~~ 108 (245)
.+++|+|+|+|||||||+++.|++.+|+.++++|++++.....+++.+..+.+++..|..+++.....++...+... ..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 46799999999999999999999999999999999999887778888999999999888888887777776655432 23
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL 188 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l 188 (245)
+.++|+||+|.+..+...|... . ..|+++|+|++|++++.+|+..|....
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~---~-~~~~~~i~l~~~~~~~~~R~~~R~~~~-------------------------- 140 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRR---I-GDPQLVICMDCSADTMTNRLLQMSRSS-------------------------- 140 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHH---T-CCCSEEEEEECCHHHHHHHHHHTCCCC--------------------------
T ss_pred CccEEEeCCCCCHHHHHHHHHh---c-CCCCEEEEEECCHHHHHHHHHcCCCCC--------------------------
Confidence 5689999999998877665432 1 367899999999999999999885210
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+.+++.+.+.+|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus 141 -~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 195 (199)
T 2bwj_A 141 -LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195 (199)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 0123345778889988999888888888776677899999999999999988764
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.94 E-value=2.1e-24 Score=177.02 Aligned_cols=208 Identities=39% Similarity=0.723 Sum_probs=173.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
+|.+|+|+|++||||||+++.|++++|+..++.++++.......+..+..+..++..+...++..+...+...+... .+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-RG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-TT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Confidence 46899999999999999999999999999999999988766556667777877888888888877777776655433 34
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI 189 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~ 189 (245)
.+++++|+|....+...+... ..++.+|+|++|++++++|+..|..+..+|+.+...+.+|.---.++.|++++.
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~ 179 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLV 179 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCB
T ss_pred CeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccc
Confidence 578999999887554443321 457899999999999999999998888888777665778877777778888888
Q ss_pred cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
....+..+.+.+++..|.+...++.++|.+.+.++.||++.+ +++++.|.+.+.
T Consensus 180 ~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~ 233 (246)
T 2bbw_A 180 QQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS 233 (246)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence 887788899999999999999999999998888999999998 999999998875
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.83 E-value=2.2e-18 Score=132.97 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=117.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcC----CchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK----TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS 107 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~----~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~ 107 (245)
++|+|.|+|||||||+++.| +.+|+.+++++++++...... ...+.....+... .+...+..++...+.. .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-S 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS-C
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh-c
Confidence 68999999999999999999 999999999999999876542 2333333333332 1133455555555533 3
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+..+|+||+ ....+...+...+ ..++.+|+|++|++++.+|+..|...
T Consensus 77 ~~~~vi~dg~-~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------------- 125 (179)
T 3lw7_A 77 NHDLVVFDGV-RSLAEVEEFKRLL----GDSVYIVAVHSPPKIRYKRMIERLRS-------------------------- 125 (179)
T ss_dssp CCSCEEEECC-CCHHHHHHHHHHH----CSCEEEEEEECCHHHHHHHHHTCC----------------------------
T ss_pred CCCeEEEeCC-CCHHHHHHHHHHh----CCCcEEEEEECCHHHHHHHHHhccCC--------------------------
Confidence 4578999998 8888877776654 35789999999999999999988520
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
....+.+.+.+++..... .+...++...+ +.||++.+++++.+.|.+.+.
T Consensus 126 ---~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 126 ---DDSKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp -----CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 012456666666533221 12333333333 567788899999999988764
No 23
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.8e-17 Score=131.38 Aligned_cols=175 Identities=14% Similarity=0.199 Sum_probs=100.9
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHH
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGI 98 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~ 98 (245)
..+.++++..++.+|+|+|+|||||||+++.|++.+|+.+++.|+++..... .... .++.. |..........+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~----~~~~~~~~~~~~~~e~~~ 87 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVG----ELFTERGEAGFRELERNM 87 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHH----HHHHhcChHHHHHHHHHH
Confidence 3455566666778999999999999999999999999999999998766422 2222 22211 100001111222
Q ss_pred HHHHHcCCCCCCceEEc---CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh-CCcccCCCCccccccCCC
Q 025970 99 IDQAMKKPSCEKGFILD---GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT-GRWIHPASGRSYHTKFAP 174 (245)
Q Consensus 99 l~~~l~~~~~~~~~iid---g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~-~r~~~~~~~~~y~~~~~~ 174 (245)
+... .....+|++ |.+........+. .++.+|||++|++++.+|+. .+...+
T Consensus 88 l~~l----~~~~~~vi~~ggg~~~~~~~~~~l~--------~~~~vi~L~~~~e~l~~Rl~~~~~~Rp------------ 143 (199)
T 3vaa_A 88 LHEV----AEFENVVISTGGGAPCFYDNMEFMN--------RTGKTVFLNVHPDVLFRRLRIAKQQRP------------ 143 (199)
T ss_dssp HHHH----TTCSSEEEECCTTGGGSTTHHHHHH--------HHSEEEEEECCHHHHHHHHHHTGGGCG------------
T ss_pred HHHH----hhcCCcEEECCCcEEccHHHHHHHH--------cCCEEEEEECCHHHHHHHHhcCCCCCC------------
Confidence 2222 233567776 3333333333322 25789999999999999998 443211
Q ss_pred CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHhhc
Q 025970 175 PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-PPKEVTVEVQKVLS 244 (245)
Q Consensus 175 p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~~e~v~~~i~~~l~ 244 (245)
+ ..+.+.+.+..++........+ +|... -+.||++. +++++++.|.+.|.
T Consensus 144 -------------~--~~~~~~~~~~~~i~~~~~~r~~---~y~~a--d~~Idt~~~s~ee~~~~I~~~l~ 194 (199)
T 3vaa_A 144 -------------I--LQGKEDDELMDFIIQALEKRAP---FYTQA--QYIFNADELEDRWQIESSVQRLQ 194 (199)
T ss_dssp -------------G--GTTCCHHHHHHHHHHHHHHHHH---HHTTS--SEEEECCCCSSHHHHHHHHHHHH
T ss_pred -------------C--cCCCChhhHHHHHHHHHHHHHH---HHhhC--CEEEECCCCCHHHHHHHHHHHHH
Confidence 1 0133445555555555444433 45442 25677765 99999999988764
No 24
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.75 E-value=5.8e-17 Score=131.30 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=113.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-IDQAM 103 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-l~~~l 103 (245)
.+.++++|+|.|+|||||||+++.|++.++ ..++.+. ...+++.|..+++++..+...++....-+ ...+.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~ 95 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR 95 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999996 4554432 23456788899998887765444333222 22232
Q ss_pred cCC--------CCCCceEEc----------CCCCCHHHH--HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 104 KKP--------SCEKGFILD----------GFPRTVVQA--EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 104 ~~~--------~~~~~~iid----------g~p~~~~~~--~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
... ..+..+|+| |+|++..+. ..+..+ ...+..|+++|+|++|++++.+|+..|....
T Consensus 96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~- 173 (229)
T 4eaq_A 96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF-AINGLYPDLTIYLNVSAEVGRERIIKNSRDQ- 173 (229)
T ss_dssp HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcCCCc-
Confidence 221 123467889 887665332 334333 2345689999999999999999999884210
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
.+.+.....+.+|+..++..+. +.| .+.+++||++.+++++++.|.+.|
T Consensus 174 --------------------------dr~e~~~~~~~~rv~~~y~~l~---~~~--~~~~~vIDa~~s~eev~~~I~~~l 222 (229)
T 4eaq_A 174 --------------------------NRLDQEDLKFHEKVIEGYQEII---HNE--SQRFKSVNADQPLENVVEDTYQTI 222 (229)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHT---TTC--TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred --------------------------cchhhhhHHHHHHHHHHHHHHH---HhC--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 1222233445555544322221 111 246899999999999999998876
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 223 ~ 223 (229)
T 4eaq_A 223 I 223 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.75 E-value=1.4e-16 Score=125.05 Aligned_cols=163 Identities=22% Similarity=0.238 Sum_probs=104.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH-----------H
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 97 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-----------~ 97 (245)
|+|+|+|+|||||||+++.|++.+ |+++++++. ...+..+..+.+++..|...+..... .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 999998853 22345666777777666544442211 1
Q ss_pred HHHHHHcCCCCCCceEEc----------CCCCCH--HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 98 IIDQAMKKPSCEKGFILD----------GFPRTV--VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 98 ~l~~~l~~~~~~~~~iid----------g~p~~~--~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
++...+. .+..+|+| |+|... .+...+..++ ..+..|+.+|+|++|++++.+|+.+|.
T Consensus 75 ~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r~------ 144 (195)
T 2pbr_A 75 KIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFA-TRGVKPDITLLLDIPVDIALRRLKEKN------ 144 (195)
T ss_dssp THHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHTTT------
T ss_pred HHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHh-hcCCCCCEEEEEeCCHHHHHHHhhccC------
Confidence 1112222 22346666 555533 2333333222 233478999999999999999998642
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+ .. .+..++ ..|.+.. ..| +.++.||++.+++++++.|.+.+.
T Consensus 145 -------------------------~~~-~~-~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 145 -------------------------RFE-NK-EFLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALS 190 (195)
T ss_dssp -------------------------CCC-CH-HHHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred -------------------------ccc-hH-HHHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHH
Confidence 111 22 344444 3333321 122 367899999999999999988775
No 26
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.73 E-value=3.7e-16 Score=123.01 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=100.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH-------HHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG-------IIDQ 101 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-------~l~~ 101 (245)
++|+|+|++||||||+++.|++.+ |+.++.++. ..+++.|..+.+++..+...+.....- .+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 999887643 335567777887777555444322111 1122
Q ss_pred HHcCC-CCCCceEEcC----------CCCC--HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccc
Q 025970 102 AMKKP-SCEKGFILDG----------FPRT--VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSY 168 (245)
Q Consensus 102 ~l~~~-~~~~~~iidg----------~p~~--~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y 168 (245)
+... ..+..+++|. ++.. ......+... ......|+.+|+|++|++++.+|+..|.
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~--------- 143 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-ATDGLIPDLTFYIDVDVETALKRKGELN--------- 143 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHC---C---------
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHH-hcCCCCCCEEEEEeCCHHHHHHHHhccC---------
Confidence 2222 2234566673 3433 2222222222 2233579999999999999999999872
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+. .+.+++....|.+. .+.+ ...++.||++.+++++++.|.+.++
T Consensus 144 ----------------------~~~~-~~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~ 190 (197)
T 2z0h_A 144 ----------------------RFEK-REFLERVREGYLVL----AREH--PERIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp ----------------------CCCC-HHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHTT
T ss_pred ----------------------cccH-HHHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 1122 22333323333332 2222 2357899999999999999998875
No 27
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.73 E-value=2.7e-18 Score=137.00 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=110.6
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH-H
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ-A 102 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~ 102 (245)
|.+...++++|+|+|+|||||||+++.|++.++..+++++ +++.. ..+++.+..+..++..+..++......+... +
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANR 80 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3334456889999999999999999999999987777663 33321 1235667777777766666665433332221 1
Q ss_pred ------HcC-CCCCCceEEcCCCCCHH--HHHH--H-HHHH---HhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcc
Q 025970 103 ------MKK-PSCEKGFILDGFPRTVV--QAEK--L-DEML---EKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRS 167 (245)
Q Consensus 103 ------l~~-~~~~~~~iidg~p~~~~--~~~~--l-~~~~---~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~ 167 (245)
+.. ...+..+|+|+++.+.. +... + ..++ ......|+.+|+|++|++++.+|+..|..
T Consensus 81 ~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~------- 153 (212)
T 2wwf_A 81 WEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE------- 153 (212)
T ss_dssp HTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS-------
T ss_pred HHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc-------
Confidence 111 11234688999875421 1110 0 0111 11124689999999999999999865420
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 168 YHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 168 y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+ . +.+..++...+..+.. ...+++||++.+++++++.|.+.+.
T Consensus 154 -----------------------r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l~ 198 (212)
T 2wwf_A 154 -----------------------IYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEVT 198 (212)
T ss_dssp -----------------------TTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHHT
T ss_pred -----------------------ccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHHH
Confidence 111 1 3445555433222221 2357889999999999999998875
No 28
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.72 E-value=3.9e-16 Score=121.10 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=94.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHh-HhCcceeehHHHHHHHHHcCCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD-EYCLCHLATGDMLRSAVAAKTP-----LGIKAKEAMDKGELVSDDLVVGIIDQAMK 104 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~-~~~~~~i~~~~li~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 104 (245)
|++|+|.|+|||||||+++.|++ .+|+.+++.|.+ +......+. +....... ....+...+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 46899999999999999999999 689999998654 443332111 11111110 12233344455553
Q ss_pred CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970 105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~ 184 (245)
....+.++|+|+++.+..+...+...+...+. +..+|+|++|++++.+|+..|..
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~------------------------ 128 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRGT------------------------ 128 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCGG------------------------
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHhcccc------------------------
Confidence 32345789999999888777777665544433 45799999999999999998852
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
...+.+.+++++..|.... .+ ..+ .+|++.+ +++...|...+
T Consensus 129 -------~~~~~~~i~~~~~~~~~~~-----~~---~~~-~id~~~~-~~v~~~i~~~l 170 (181)
T 1ly1_A 129 -------KAVPIDVLRSMYKSMREYL-----GL---PVY-NGTPGKP-KAVIFDVDGTL 170 (181)
T ss_dssp -------GCCCHHHHHHHHHHHHHHH-----TC---CCC--------------------
T ss_pred -------CCCCHHHHHHHHHHhhccC-----CC---Ccc-ccCCCCC-ceeeehhhhhh
Confidence 1235677777777776541 11 122 3777774 77777776655
No 29
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.71 E-value=2.1e-16 Score=125.37 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=102.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDQAMKKPS 107 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~l~~~l~~~~ 107 (245)
+++|+|+|++||||||+++.|++.+|..+++.|.+..... ......|....+... ...+...+ .
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~---~ 84 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL---A 84 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH---T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH---h
Confidence 6789999999999999999999999999999987642210 111122332222211 12222222 3
Q ss_pred CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+..+|+|+..........+.. ....+..+|+|++|++++.+|+..|..+
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~Rl~~R~~~-------------------------- 134 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRE----SAPGGLAFVFLHGSESVLAERMHHRTGH-------------------------- 134 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHH----TSTTCCEEEEEECCHHHHHHHHHHHHSS--------------------------
T ss_pred cCCCEEEECCCCCHHHHHHHHH----hcCCCeEEEEEeCCHHHHHHHHHHhhcc--------------------------
Confidence 3567899988776666655443 2244579999999999999999988521
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
....+.++.++..+. ++ + .....+.||++.+++++++.|.+.|.
T Consensus 135 -----~~~~~~~~~~~~~~~----~~---~-~~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 135 -----FMPSSLLQTQLETLE----DP---R-GEVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp -----CCCHHHHHHHHHHCC----CC---T-TSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHhcC----CC---C-CCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 112334433333322 11 1 12246789999999999999988774
No 30
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.71 E-value=5.5e-16 Score=123.40 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=103.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH-HHHcC---
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-QAMKK--- 105 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~--- 105 (245)
.+|+|.|++||||||+++.|++.+ |..++.+.. +.+++.|..+++++.++..++.....-++. .+..+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999988 555544311 235778899999888877666654332221 11111
Q ss_pred -----CCCCCceEEcCCC----------C--CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccc
Q 025970 106 -----PSCEKGFILDGFP----------R--TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSY 168 (245)
Q Consensus 106 -----~~~~~~~iidg~p----------~--~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y 168 (245)
+..+..+|.|.|. + .......+.... ..+..||++|||++|++++.+|+.+|....
T Consensus 77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~------ 149 (205)
T 4hlc_A 77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEVGRERIIKNSRDQ------ 149 (205)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHC-----------
T ss_pred HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHHHHHHHHhcCCcc------
Confidence 1122345556442 1 123333333332 234789999999999999999999875211
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.|-+.....+..++ .....++... .+.+++||+++++++|++.|.+.|.
T Consensus 150 ---------------------dr~e~~~~~f~~~v------~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~ 199 (205)
T 4hlc_A 150 ---------------------NRLDQEDLKFHEKV------IEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTII 199 (205)
T ss_dssp -----------------------CCHHHHHHHHHH------HHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred ---------------------cchhccCHHHHHHH------HHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 01111111222222 2222233332 3469999999999999988877653
No 31
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.69 E-value=6.3e-16 Score=120.70 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=91.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
++.|+|+|+|||||||+++.|++.+|++++++|.++..... ......... .|..........++...... ..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~---~~ 76 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIAWIFEM---EGEAGFRRREREMIEALCKL---DN 76 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHHHHHS---SS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChhhHHHH---hCHHHHHHHHHHHHHHHHhc---CC
Confidence 55899999999999999999999999999999998776432 222111111 01000011222222222221 22
Q ss_pred ceEEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH--hCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 111 GFILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI--TGRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 111 ~~iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~--~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
.+|..| .+........+.. ...+|||++|++++.+|+ ..+..
T Consensus 77 ~vi~~gg~~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~~-------------------------- 122 (185)
T 3trf_A 77 IILATGGGVVLDEKNRQQISE--------TGVVIYLTASIDTQLKRIGQKGEMR-------------------------- 122 (185)
T ss_dssp CEEECCTTGGGSHHHHHHHHH--------HEEEEEEECCHHHHHHHHHCCTTCS--------------------------
T ss_pred cEEecCCceecCHHHHHHHHh--------CCcEEEEECCHHHHHHHHhhcCCCC--------------------------
Confidence 344443 2233333333322 248999999999999999 44321
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHhhc
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-PPKEVTVEVQKVLS 244 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~~e~v~~~i~~~l~ 244 (245)
|+.........++........+ +|.... -+.||++. +++++++.|.+.+.
T Consensus 123 ----rp~~~~~~~~~~l~~~~~~r~~---~y~~~a-d~~Idt~~~~~~e~~~~I~~~l~ 173 (185)
T 3trf_A 123 ----RPLFIKNNSKEKLQQLNEIRKP---LYQAMA-DLVYPTDDLNPRQLATQILVDIK 173 (185)
T ss_dssp ----SCCCCCHHHHHHHHHHHHHHHH---HHHHHC-SEEEECTTCCHHHHHHHHHHHSC
T ss_pred ----CCCCCCCCHHHHHHHHHHHHHH---HHhhcC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 2222222222333333333333 333211 25677765 89999999988775
No 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.69 E-value=4.6e-16 Score=121.79 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=96.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDQAM 103 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~l~~~l 103 (245)
+++|+|+|+|||||||+++.|+++++ +.+++++++++......... ....+. ....+ ...+...+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999998 99999999988754321100 000000 00000 111222222222
Q ss_pred cCCCCCCceEEcCCCCCHHHHHH---H-HHHHHhcCCCccEEEEEecCHHHHHH-HHhC--CcccCCCCccccccCCCCC
Q 025970 104 KKPSCEKGFILDGFPRTVVQAEK---L-DEMLEKQGTKIDKVLNFAIDDSILEE-RITG--RWIHPASGRSYHTKFAPPK 176 (245)
Q Consensus 104 ~~~~~~~~~iidg~p~~~~~~~~---l-~~~~~~~~~~~~~vi~L~~~~e~~~~-R~~~--r~~~~~~~~~y~~~~~~p~ 176 (245)
........+|+|+++........ + .+.+.. ..|+++|||++|++++.+ |+.. |.
T Consensus 79 ~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~rRl~~~~R~----------------- 139 (192)
T 1kht_A 79 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSDETRV----------------- 139 (192)
T ss_dssp HHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTSSSCS-----------------
T ss_pred HhhccCCeEEEccceeccccccccccCcHHHHhc--cCCCEEEEEeCCHHHHHHHHhhhcccC-----------------
Confidence 21112357899987542110000 0 011111 136889999999999996 9987 53
Q ss_pred CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHhhc
Q 025970 177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL-HAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~i-d~~~~~e~v~~~i~~~l~ 244 (245)
++....+.+..+... ..........|.. ..++.+ +++.+++++++.|.+.|.
T Consensus 140 --------------r~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i~ 192 (192)
T 1kht_A 140 --------------RDLDTASTIEQHQFM-NRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVLR 192 (192)
T ss_dssp --------------SSCCCHHHHHHHHHH-HHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred --------------CCcCCHHHHHHHHHH-HHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHhC
Confidence 123333333332222 1122222223322 234454 555679999999988763
No 33
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.67 E-value=3.2e-16 Score=126.43 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=105.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ 101 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~ 101 (245)
.++++|+|.|++||||||+++.|++.++ +.++.+ ++ ..+++.|+.+++++.++...+.....-....
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999984 333322 21 2467889999999888754433322222222
Q ss_pred HHcC--------CCCCCceEEcCCCCC------------HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCccc
Q 025970 102 AMKK--------PSCEKGFILDGFPRT------------VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIH 161 (245)
Q Consensus 102 ~l~~--------~~~~~~~iidg~p~~------------~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~ 161 (245)
+... +..+..+|.|.|..+ ......+..+. ..+..||++|||++|++++.+|+..|..
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~-~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~- 174 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWV-QGGFQPDLTVLFDVPPQIASARRGAVRM- 174 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCSSCGGGTTTCCCC-
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhccC-
Confidence 2221 112345667865322 22333333322 2347899999999999999999998741
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHH
Q 025970 162 PASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ 240 (245)
Q Consensus 162 ~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~ 240 (245)
.. +.+.....+..++ +.|.+. .+.+ .+.+++||++.+++++.+.|.
T Consensus 175 ---~d------------------------r~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~s~eeV~~~I~ 221 (227)
T 3v9p_A 175 ---PD------------------------KFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSEPIAQIRKQLE 221 (227)
T ss_dssp ---C---------------------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHH
T ss_pred ---cc------------------------chhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCCCHHHHHHHHH
Confidence 00 1122122333333 333221 1111 346999999999999999999
Q ss_pred Hhhc
Q 025970 241 KVLS 244 (245)
Q Consensus 241 ~~l~ 244 (245)
+.|.
T Consensus 222 ~~l~ 225 (227)
T 3v9p_A 222 GVLA 225 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 34
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.67 E-value=3.4e-15 Score=119.51 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=107.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHHH-HHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVSDDLVV-GIIDQAM 103 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~-~~l~~~l 103 (245)
++++|+|.|++||||||+++.|++.++ +.++.+. + ..++++|..+++++.++. .+.+.... -....+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999884 4554432 1 246788999999988764 34333221 1112222
Q ss_pred cC--------CCCCCceEEcCCC------------CCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 104 KK--------PSCEKGFILDGFP------------RTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 104 ~~--------~~~~~~~iidg~p------------~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
.+ +..+..+|.|.|. ........+..+. ..+..||++|+|++|++++.+|+..|..
T Consensus 79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~-~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~--- 154 (213)
T 4edh_A 79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFV-QGDLRPDLTLVFDLPVEIGLARAAARGR--- 154 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHCCCSS---
T ss_pred HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhcCC---
Confidence 11 1123446666431 1223333333322 2357899999999999999999998841
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCC-cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD-TAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV 242 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~ 242 (245)
.. +.+. ..+.+++..+.|.+. .+.+ .+.+++||++.+++++++.|.+.
T Consensus 155 -~d------------------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~~I~~~ 203 (213)
T 4edh_A 155 -LD------------------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQAGLDRL 203 (213)
T ss_dssp -CC------------------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHH
T ss_pred -cC------------------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHHHHHHH
Confidence 00 1111 223333323333332 1122 24699999999999999999887
Q ss_pred hc
Q 025970 243 LS 244 (245)
Q Consensus 243 l~ 244 (245)
|.
T Consensus 204 l~ 205 (213)
T 4edh_A 204 LP 205 (213)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 35
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.67 E-value=1.7e-15 Score=118.68 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=96.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSD--DLVVGIIDQAM 103 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~--~~~~~~l~~~l 103 (245)
++|+|+|+|||||||+++.|+++++ +.+++.++++.+.+.. ....+. ..+ +...+. ..+...+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998 8899988888765521 111110 000 112222 11221122222
Q ss_pred cCC---CCCCceEEcCCCCCHHH--------HHHHHHHHHhcCCCccEEEEEecCHHHHHHH-HhC--CcccCCCCcccc
Q 025970 104 KKP---SCEKGFILDGFPRTVVQ--------AEKLDEMLEKQGTKIDKVLNFAIDDSILEER-ITG--RWIHPASGRSYH 169 (245)
Q Consensus 104 ~~~---~~~~~~iidg~p~~~~~--------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R-~~~--r~~~~~~~~~y~ 169 (245)
... ..+..+|+|+++....+ ...+.. ..|+.+|+|++|++++++| +.. |..
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~l~~~~~~~~~rr~~~~~R~~--------- 141 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE------INPSVIFLLEADPKIILSRQKRDTTRNR--------- 141 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH------HCCSEEEEEECCHHHHHHHHHHCTTTCC---------
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh------cCCCEEEEEeCCHHHHHHHHHhhcccCC---------
Confidence 111 23467899987432211 122222 1478999999999998866 766 531
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHhh
Q 025970 170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYAKKGVLAQL-HAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~~~~~~~~i-d~~~~~e~v~~~i~~~l 243 (245)
.+....+.+. .++... .......|. ...++.| |++.+++++++.|.+.|
T Consensus 142 ---------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 142 ---------------------NDYSDESVILETINFARY---AATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp ---------------------CCCCSHHHHHHHHHHHHH---HHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ---------------------CCccCHHHHHHHHHHHHH---HHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 0111222222 222222 122222232 2457888 99999999999998876
No 36
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.67 E-value=1.7e-15 Score=116.37 Aligned_cols=158 Identities=20% Similarity=0.281 Sum_probs=92.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
|+|+|+|+|||||||+++.|++.+|++++++|++.+... |..+.+++.. |......+...++ ..+. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~---~~~ 70 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS---EKE 70 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT---TSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh---ccC
Confidence 579999999999999999999999999999999887643 2222222221 2111111111122 2222 234
Q ss_pred ceEEc-CC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 111 GFILD-GF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 111 ~~iid-g~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+|++ |. +........ +. .++.+|+|++|++++.+|+..|...+
T Consensus 71 ~~Vi~~g~~~~~~~~~~~~----l~----~~~~~i~l~~~~e~~~~R~~~r~~r~------------------------- 117 (168)
T 2pt5_A 71 NVVISTGGGLGANEEALNF----MK----SRGTTVFIDIPFEVFLERCKDSKERP------------------------- 117 (168)
T ss_dssp SEEEECCHHHHTCHHHHHH----HH----TTSEEEEEECCHHHHHHHCBCTTCCB-------------------------
T ss_pred CeEEECCCCEeCCHHHHHH----HH----cCCEEEEEECCHHHHHHHHhCCCCCC-------------------------
Confidence 56665 31 122222221 21 25899999999999999998874100
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
... +..+.++.++.. . ...|.. ..++. +++.+++++++.|.+.+.
T Consensus 118 ~~~---~~~~~i~~~~~~----~---~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 118 LLK---RPLDEIKNLFEE----R---RKIYSK-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp GGG---SCGGGTHHHHHH----H---HHHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred CCc---chHHHHHHHHHH----H---HHHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 000 111222222221 1 123333 34555 778999999999998775
No 37
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.66 E-value=4.3e-15 Score=116.15 Aligned_cols=116 Identities=18% Similarity=0.331 Sum_probs=74.1
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHhH-hCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC---CHHHHHHHH
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE-YCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV---SDDLVVGII 99 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~-~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~l 99 (245)
+++.+.++++|+|+|+|||||||+++.|++. +|++++++|+++++. ......+.. +.. ..+ ++......+
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~~~l 76 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLLDFM 76 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHHHHH
Confidence 3566777889999999999999999999999 799999999998873 111122221 111 122 233333334
Q ss_pred HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...+.. ..+++++...... | .. ..++.+|+|++|++++.+|+..|.
T Consensus 77 ~~~~~~---~g~~vi~~~~~~~-----~----~~--~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 77 EPIMVS---RGNHVVDYHSSEL-----F----PE--RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HHHHTS---SSEEEEECSCCTT-----S----CG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred HHHHhc---cCCEEEeCchHhh-----h----hh--ccCCEEEEEECCHHHHHHHHHhCC
Confidence 443322 3477888653211 1 00 125789999999999999999874
No 38
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.66 E-value=2.3e-15 Score=115.89 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=89.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHH--HHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIK--AKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
++|+|+|+|||||||+++.|++.+|+.+++.|.+..... ..... ....+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~~~~~~~~l~~~---------------------- 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNEKLFEHFNKLADE---------------------- 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHHHHHHHHHHHTTC----------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHHHHHHHHHHHHhC----------------------
Confidence 479999999999999999999999999999987654321 00110 00111111
Q ss_pred CceEEcCC---------------CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCC
Q 025970 110 KGFILDGF---------------PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAP 174 (245)
Q Consensus 110 ~~~iidg~---------------p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~ 174 (245)
..++.|.+ .........+... ...|+.+|||++|++++.+|+..|..
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~i~l~~~~e~~~~R~~~r~r-------------- 117 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDK----IKAKAKVVYLHADPSVIKKRLRVRGD-------------- 117 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHH----HTTTEEEEEEECCHHHHHHHHHHHSC--------------
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhcc----CCCCCEEEEEeCCHHHHHHHHHhcCC--------------
Confidence 22333311 1222333333322 25689999999999999999988731
Q ss_pred CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 175 PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 175 p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
+....+.+++..+.|. .....|. ...++||++ .+++++++.|.+.++
T Consensus 118 -----------------~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~ 165 (173)
T 3kb2_A 118 -----------------EYIEGKDIDSILELYR----EVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVE 165 (173)
T ss_dssp -----------------SCCCHHHHHHHHHHHH----HHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred -----------------cchhhhHHHHHHHHHH----HHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHh
Confidence 1122223333233322 2222332 257889998 599999999988764
No 39
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.66 E-value=3.7e-15 Score=114.88 Aligned_cols=161 Identities=13% Similarity=0.132 Sum_probs=95.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
++|+|+|+|||||||+++.|++.+|+++++.|.+++... +......+.. .|..........++ ..+. ...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~~~~~~~-~~l~----~~~ 72 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRRRESEAL-QAVA----TPN 72 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHHHHHHHH-HHHC----CSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHHHHHHHH-HHhh----cCC
Confidence 479999999999999999999999999999999887642 2222221110 01100011111122 2232 334
Q ss_pred eEEc-CC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh--CCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970 112 FILD-GF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT--GRWIHPASGRSYHTKFAPPKVHGFDDVTGE 186 (245)
Q Consensus 112 ~iid-g~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~--~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~ 186 (245)
+|++ |. +........+. .++.+|+|++|++++.+|+. .|..+
T Consensus 73 ~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r~~~------------------------- 119 (173)
T 1e6c_A 73 RVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQAHQ------------------------- 119 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHCSCC-------------------------
T ss_pred eEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccCCCC-------------------------
Confidence 5664 42 22222222221 24799999999999999998 76210
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
++....+....++..+.....+ +|... .+.||++ .+++++.+.|.+.+.
T Consensus 120 ----r~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 120 ----RPTLTGRPIAEEMEAVLREREA---LYQDV--AHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ----CCCTTHHHHHHHHHHHHHHHHH---HHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred ----CCcCCCCCHHHHHHHHHHHHHH---HHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence 1222223334445544443332 33332 3568887 899999999998875
No 40
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.65 E-value=1.4e-15 Score=120.33 Aligned_cols=169 Identities=12% Similarity=0.029 Sum_probs=101.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH--HHHc--
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID--QAMK-- 104 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~--~~l~-- 104 (245)
++++|+|+|+|||||||+++.|++.+ |+.+++++... ..+..|..+..++..+..++.... .++. .+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 57899999999999999999999998 68787764211 134567778888776554444322 2110 1110
Q ss_pred ----C-CCCCCceEEcCCCCCHHH--------HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccccc
Q 025970 105 ----K-PSCEKGFILDGFPRTVVQ--------AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTK 171 (245)
Q Consensus 105 ----~-~~~~~~~iidg~p~~~~~--------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~ 171 (245)
. ...+..+|+|+++.+... ...+. .+......|+.+|||++|++++.+ .|..+
T Consensus 77 ~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~-~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d---------- 142 (204)
T 2v54_A 77 SFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSK-SYESGLPKPDLVIFLESGSKEINR---NVGEE---------- 142 (204)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHH-HHHTTSBCCSEEEEECCCHHHHTT---CCSSS----------
T ss_pred HHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHH-HHhcCCCCCCEEEEEeCCHHHHHh---hcCcc----------
Confidence 0 112346888988754321 11111 122223478999999999998877 33210
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 172 FAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 172 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+ . ..+..++...+..+. +. ....+++||++.+++++++.|.+.+.
T Consensus 143 -------------------~~e-~-~~~~~rl~~~y~~~~---~~--~~~~~~~Id~~~~~~~v~~~i~~~l~ 189 (204)
T 2v54_A 143 -------------------IYE-D-VTFQQKVLQEYKKMI---EE--GDIHWQIISSEFEEDVKKELIKNIVI 189 (204)
T ss_dssp -------------------TTC-C-SHHHHHHHHHHHHHH---TT--CSSCEEEECTTSCHHHHHHHHHHHHH
T ss_pred -------------------ccc-H-HHHHHHHHHHHHHHH---Hh--CCCcEEEEECCCCHHHHHHHHHHHHH
Confidence 001 1 244455543222111 01 12357899999999999999988764
No 41
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.65 E-value=1.8e-14 Score=113.97 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=97.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH------H
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ------A 102 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~------~ 102 (245)
|+|+|.|+.||||||+++.|++.+ |..++.+.. +.+++.+..+..++..+...|.....-.... .
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999888 565554421 2356677777776665544333221111111 1
Q ss_pred Hc-CCCCCCceEEcCCCCC------------HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccc
Q 025970 103 MK-KPSCEKGFILDGFPRT------------VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYH 169 (245)
Q Consensus 103 l~-~~~~~~~~iidg~p~~------------~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~ 169 (245)
+. .+..+..+|.|.|..+ ......+... ...+..||++|+|++|++++.+|...+.
T Consensus 75 I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~-~~~~~~PDl~i~Ld~~~e~~~~R~~~~d---------- 143 (197)
T 3hjn_A 75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-ATDGLIPDLTFYIDVDVETALKRKGELN---------- 143 (197)
T ss_dssp HHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHC---C----------
T ss_pred HHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhh-hhcCCCCCceeecCcChHHHHHhCcCcC----------
Confidence 11 1122344566654221 2222222222 2335789999999999999999954432
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970 170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLSS 245 (245)
Q Consensus 170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~~ 245 (245)
|-. ..+ +..++ +.|.+ .... ...+++|||++++++|++.|.+.|+.
T Consensus 144 ---------------------r~e-~~e-f~~rv~~~y~~-------la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 144 ---------------------RFE-KRE-FLERVREGYLV-------LAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp ---------------------TTC-CHH-HHHHHHHHHHH-------HHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred ---------------------ccc-cHH-HHHHHHHHHHH-------HHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 111 122 33332 33322 2222 24689999999999999999988753
No 42
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.65 E-value=9.9e-16 Score=119.53 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=90.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
++|+|+|+|||||||+++.|++.+|+++++.|++++.... ... .+++. .|..........++...+.. .
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~----~ 72 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSI----ADIFATDGEQEFRRIEEDVVRAALAD----H 72 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCH----HHHHHHHCHHHHHHHHHHHHHHHHHH----C
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CCH----HHHHHHhChHHHHHHHHHHHHHHHhc----C
Confidence 5799999999999999999999999999999998876532 221 12221 12111112222222222211 1
Q ss_pred ceEE-cCCC--CCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 111 GFIL-DGFP--RTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 111 ~~ii-dg~p--~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+|+ +|.. ....... .+. ++.+|+|++|++++.+|+..|...+
T Consensus 73 ~~vi~~g~~~v~~~~~~~----~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~------------------------- 118 (184)
T 2iyv_A 73 DGVLSLGGGAVTSPGVRA----ALA-----GHTVVYLEISAAEGVRRTGGNTVRP------------------------- 118 (184)
T ss_dssp CSEEECCTTGGGSHHHHH----HHT-----TSCEEEEECCHHHHHHHTTCCCCCS-------------------------
T ss_pred CeEEecCCcEEcCHHHHH----HHc-----CCeEEEEeCCHHHHHHHHhCCCCCC-------------------------
Confidence 2333 3321 1111111 111 4689999999999999998874211
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
+.. ..+..+ ++..+..... .+|.... .+.||++ .+++++++.|.+.+.
T Consensus 119 ~~~-~~~~~~----~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 119 LLA-GPDRAE----KYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp STT-SCCHHH----HHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred Ccc-CCCHHH----HHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHHh
Confidence 000 111222 2333222222 2333212 3678888 899999999988764
No 43
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.65 E-value=1.5e-15 Score=123.17 Aligned_cols=179 Identities=18% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC---CCCCHHHHHH-HHHHHHc
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG---ELVSDDLVVG-IIDQAMK 104 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~-~l~~~l~ 104 (245)
-++++|+|.|++||||||+++.|++.++...++...+.++ ..++++|+.+++++..+ ..+.+....- ....+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999885433331112222 24678899999988632 2344332211 1111111
Q ss_pred C--------CCCCCceEEcCCC----------C--CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 105 K--------PSCEKGFILDGFP----------R--TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 105 ~--------~~~~~~~iidg~p----------~--~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
. +..+..+|.|.|. + .......+..+.. .+..||++|+|++|++++.+|+.+|...
T Consensus 103 ~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~-~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~--- 178 (236)
T 3lv8_A 103 LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTAL-GDFKPDLTLYLDIDPKLGLERARGRGEL--- 178 (236)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHC-----CC---
T ss_pred HHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence 1 1123456666431 1 2233333333322 2478999999999999999999988410
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
. +.+.....+..++... ..++......+++||++++++++.+.|.+.|.
T Consensus 179 -d------------------------r~E~~~~~~~~rv~~~------y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~ 227 (236)
T 3lv8_A 179 -D------------------------RIEKMDISFFERARER------YLELANSDDSVVMIDAAQSIEQVTADIRRALQ 227 (236)
T ss_dssp -C------------------------TTTTSCHHHHHHHHHH------HHHHHHHCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred -c------------------------hhhhhHHHHHHHHHHH------HHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 1111112333333221 22233332348999999999999999988764
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.64 E-value=8.2e-15 Score=116.40 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=95.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCC-----CC---------------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL-----VS--------------- 91 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-----~~--------------- 91 (245)
++|+|+|++||||||+++.|++ +|++++++|++.+....++......+...+..... +.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 99999999999876543333222222222221110 10
Q ss_pred ---HHHHH----HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 92 ---DDLVV----GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 92 ---~~~~~----~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
..... ..+...+... ...++|+++. ...... + ...++.+|+|++|++++.+|+..|.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~-~l~e~~--~-------~~~~d~vi~l~~~~e~~~~Rl~~R~----- 145 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQ-TAPYTLFVVP-LLIENK--L-------TALCDRILVVDVSPQTQLARSAQRD----- 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-CSSEEEEECT-TTTTTT--C-------GGGCSEEEEEECCHHHHHHHHC--------
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCEEEEEec-hhhhcC--c-------HhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 00011 1111222222 2346777863 221110 1 1246899999999999999998873
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChh----HHHHHHH
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPK----EVTVEVQ 240 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e----~v~~~i~ 240 (245)
+.+.+.+.+++.. ..+..+.+...+ ++||++.+++ ++.+.|.
T Consensus 146 ----------------------------~~~~e~~~~r~~~----q~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~ 191 (206)
T 1jjv_A 146 ----------------------------NNNFEQIQRIMNS----QVSQQERLKWAD--DVINNDAELAQNLPHLQQKVL 191 (206)
T ss_dssp ------------------------------CHHHHHHHHHH----SCCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHh----cCChHHHHHhCC--EEEECCCCccccHHHHHHHHH
Confidence 2245566666654 123344444444 5688888999 9999888
Q ss_pred Hhhc
Q 025970 241 KVLS 244 (245)
Q Consensus 241 ~~l~ 244 (245)
+.+.
T Consensus 192 ~~~~ 195 (206)
T 1jjv_A 192 ELHQ 195 (206)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 45
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.64 E-value=1.7e-14 Score=115.41 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---Cc-ceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHHHHH-H
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL-CHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLVVGI-I 99 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~-l 99 (245)
++++|+|.|++||||||+++.|++.+ |+ .++.+ ++ +.++++|+.+++++... ..+.+....-+ .
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 36799999999999999999999988 33 22222 11 24678999999998732 33444321111 1
Q ss_pred HHHHcC--------CCCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 100 DQAMKK--------PSCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 100 ~~~l~~--------~~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
..+... +..+..+|.|.|.. .......+..+. ..+..||++|||++|++++++|+.+|.
T Consensus 76 A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~-~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 76 AARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV-LGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHh-ccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111111 11234456665321 223333333332 234789999999999999999999874
Q ss_pred ccCCCCccccccCCCCCCCCCCCCCCCccccCCCC-cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHH
Q 025970 160 IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD-TAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE 238 (245)
Q Consensus 160 ~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~ 238 (245)
.. . +.+. ..+.+++..+.|.+ +....+.+++||++.+++++++.
T Consensus 155 ~~----d------------------------r~E~~~~~f~~rv~~~y~~-------la~~~~~~~vIDa~~s~eeV~~~ 199 (213)
T 4tmk_A 155 EL----D------------------------RIEQESFDFFNRTRARYLE-------LAAQDKSIHTIDATQPLEAVMDA 199 (213)
T ss_dssp SC----C------------------------TTTTSCHHHHHHHHHHHHH-------HHHTCTTEEEEETTSCHHHHHHH
T ss_pred Cc----c------------------------chhhhHHHHHHHHHHHHHH-------HHHHCCcEEEECCCCCHHHHHHH
Confidence 10 0 1111 22222222233332 22223579999999999999999
Q ss_pred HHHhhc
Q 025970 239 VQKVLS 244 (245)
Q Consensus 239 i~~~l~ 244 (245)
|.+.|.
T Consensus 200 I~~~l~ 205 (213)
T 4tmk_A 200 IRTTVT 205 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 46
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.63 E-value=1.7e-15 Score=121.47 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=99.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHHH-------
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLVVG------- 97 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~------- 97 (245)
++++|+|+|++||||||+++.|++ +|++++++|.+++....++......+...+.. ...+....+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 468999999999999999999998 99999999999887554444333444433321 11122211111
Q ss_pred -----------HHH----HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970 98 -----------IID----QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP 162 (245)
Q Consensus 98 -----------~l~----~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~ 162 (245)
.+. ..+... ..++++.+.|...... +. ..|+.+|||++|++++.+|+..|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~--- 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS--LY-------KKANRVLVVDVSPETQLKRTMQRD--- 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTT--GG-------GGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccC--cc-------ccCCEEEEEECCHHHHHHHHHHcC---
Confidence 111 111111 1234443444432221 11 347899999999999999998763
Q ss_pred CCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHh
Q 025970 163 ASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV 242 (245)
Q Consensus 163 ~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~ 242 (245)
..+.+.+..++... .+...++...+ +.||++.+++++.+.|.+.
T Consensus 148 ------------------------------~~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~ 191 (218)
T 1vht_A 148 ------------------------------DVTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARL 191 (218)
T ss_dssp ------------------------------TCCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHH
T ss_pred ------------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHH
Confidence 22344555555431 12223333333 5788888999999999877
Q ss_pred hc
Q 025970 243 LS 244 (245)
Q Consensus 243 l~ 244 (245)
+.
T Consensus 192 l~ 193 (218)
T 1vht_A 192 HA 193 (218)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 47
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.63 E-value=2.9e-14 Score=110.83 Aligned_cols=160 Identities=11% Similarity=0.141 Sum_probs=90.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCccee-ehHHHHHHHHHcCCchHHHHHHHHHcCCCC----CH--HHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL-ATGDMLRSAVAAKTPLGIKAKEAMDKGELV----SD--DLVVGIIDQ 101 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i-~~~~li~~~~~~~~~~~~~i~~~l~~~~~~----~~--~~~~~~l~~ 101 (245)
.++++|+|+|+|||||||+++.|++.+|.+++ +.+. .+..+.+++..|... .. ..+...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 71 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999888 4321 223333333222110 00 223334444
Q ss_pred HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCC
Q 025970 102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~ 181 (245)
.+.. .+..+|+|+..........+...+...+..+ ..|+|++|++++.+|+..|..
T Consensus 72 ~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~--------------------- 127 (183)
T 2vli_A 72 ASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ--------------------- 127 (183)
T ss_dssp HHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC-----------------------
T ss_pred HHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc---------------------
Confidence 3322 1345677866555544444444444444333 569999999999999998741
Q ss_pred CCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
++ ...+.++..+. ...++ . + . . +||++ .+++++++.|.+.+.
T Consensus 128 ---------r~-~~~~~~~~~~~----~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 128 ---------PQ-VNVGTVEDRLN----ELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVG 170 (183)
T ss_dssp ------------CCHHHHHHHHH----HHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHT
T ss_pred ---------cc-hhHHHHHHHHH----hhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHH
Confidence 11 12233333222 22222 1 2 2 3 78987 899999999998875
No 48
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.62 E-value=1.7e-15 Score=118.80 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.++++|+|+|+|||||||+++.|++.+|+++++.|.+...........+......+... -...+...+...+. .
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~---~ 76 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT---AIMMLYHTAATILQ---S 76 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHH---HHHHHHHHHHHHHH---T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHH---HHHHHHHHHHHHHh---C
Confidence 45789999999999999999999999999999997765443221000000000000000 00111122222222 2
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
+.++|+|++.........+.. +...+..|+++|+|++|++++.+|+..|.
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 77 GQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp TCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 457999998732222223322 23334567899999999999999998875
No 49
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.62 E-value=2.2e-15 Score=125.62 Aligned_cols=166 Identities=16% Similarity=0.118 Sum_probs=102.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH--------
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLV-------- 95 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~-------- 95 (245)
.++++|+|+|++||||||+|+.|+ .+|++++++|.+.+....++......+.+.+... ..+....+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 457899999999999999999999 6899999999998876655554444443332211 11111110
Q ss_pred --------------HHHHHHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 96 --------------VGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 96 --------------~~~l~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...+...+... .....+|+||....... +...++.+|||++|++++.+|+..|.
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~----------~~~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG----------WQSMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT----------GGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc----------hHHhCCEEEEEcCCHHHHHHHHHHcC
Confidence 00111111110 11246888986322110 11246899999999999999998773
Q ss_pred ccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 025970 160 IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239 (245)
Q Consensus 160 ~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i 239 (245)
+.+.+.+..++... .+...++...+ ++||++.+++++.+.|
T Consensus 222 ---------------------------------g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I 262 (281)
T 2f6r_A 222 ---------------------------------GLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQV 262 (281)
T ss_dssp ---------------------------------CCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHH
Confidence 12344555555443 22233333333 5688888999999999
Q ss_pred HHhhc
Q 025970 240 QKVLS 244 (245)
Q Consensus 240 ~~~l~ 244 (245)
.+.+.
T Consensus 263 ~~~l~ 267 (281)
T 2f6r_A 263 EKAWN 267 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 50
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.62 E-value=1.4e-14 Score=115.16 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=109.4
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHH-------------
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDL------------- 94 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~------------- 94 (245)
.|.|+|.+||||||+++.|++ +|++++++|.+.++...++.+....+.+.+..+ +.++...
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~ 89 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARR 89 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHH
Confidence 689999999999999999997 999999999999998887777666666665422 2333221
Q ss_pred -----HHHH----HHHHHcCCCCCCceEEcCCCCCHH-HHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 95 -----VVGI----IDQAMKKPSCEKGFILDGFPRTVV-QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 95 -----~~~~----l~~~l~~~~~~~~~iidg~p~~~~-~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
+..+ +...+... ....+++|. |.-.+ .. +. ..+|.+|+++||+++.++|+..|.
T Consensus 90 ~L~~i~HP~I~~~~~~~~~~~-~~~~vv~d~-pLL~E~~~--~~-------~~~D~vi~V~ap~e~r~~Rl~~Rd----- 153 (210)
T 4i1u_A 90 RLEAITHPLIRAETEREARDA-QGPYVIFVV-PLLVESRN--WK-------ARCDRVLVVDCPVDTQIARVMQRN----- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CSSSEEEEC-TTCTTCHH--HH-------HHCSEEEEEECCHHHHHHHHHHHH-----
T ss_pred HHHHHhhHHHHHHHHHHHHhc-CCCEEEEEE-ecccccCC--cc-------ccCCeEEEEECCHHHHHHHHHhcC-----
Confidence 1112 22222221 123355664 54443 21 11 136999999999999999999873
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhh
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVL 243 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l 243 (245)
+.+.+.+.+|+... .+..+.+...+ ++|+++ ++++++..+|...+
T Consensus 154 ----------------------------g~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~ 199 (210)
T 4i1u_A 154 ----------------------------GFTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALH 199 (210)
T ss_dssp ----------------------------CCCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHH
Confidence 44667777777542 23445555444 567888 89999999998765
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
+
T Consensus 200 ~ 200 (210)
T 4i1u_A 200 Q 200 (210)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.62 E-value=2.9e-15 Score=115.23 Aligned_cols=105 Identities=23% Similarity=0.276 Sum_probs=66.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
.+|+|+|+|||||||+++.|++++|++++++|.++++... .. +.+++.. |..........++..... ..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~~~~----~~ 77 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDELKT----LK 77 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHHHHT----CS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHHHHh----cC
Confidence 4899999999999999999999999999999998877532 22 2233322 221111222222333221 12
Q ss_pred ce-EEc-C--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 111 GF-ILD-G--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 111 ~~-iid-g--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
.+ |+. | ++.. .. + ..++.+|+|++|++++.+|+..|
T Consensus 78 ~~~Vi~~g~g~~~~-~~-------l----~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 78 TPHVISTGGGIVMH-EN-------L----KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp SCCEEECCGGGGGC-GG-------G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred CCEEEECCCCEech-hH-------H----hcCCEEEEEECCHHHHHHHHhcc
Confidence 33 443 2 2222 11 1 23689999999999999999887
No 52
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.62 E-value=2.1e-14 Score=114.14 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=95.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCCchHHHHHHHHHcCC---CCCHHHH---------
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKTPLGIKAKEAMDKGE---LVSDDLV--------- 95 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~--------- 95 (245)
++++|+|.|+|||||||+++.|++.++.. ++.++ .+.+..+.+++..+. .......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999763 44321 011222222222211 1111110
Q ss_pred ---HHHHHHHHcCCCCCCceEEcCCCCCHHHH--------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHh-CCcccCC
Q 025970 96 ---VGIIDQAMKKPSCEKGFILDGFPRTVVQA--------EKLDEMLEKQGTKIDKVLNFAIDDSILEERIT-GRWIHPA 163 (245)
Q Consensus 96 ---~~~l~~~l~~~~~~~~~iidg~p~~~~~~--------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~-~r~~~~~ 163 (245)
...+...+ ..+..+|+|++|.+.... ..+.. +......|+++|+|++|++++.+|+. .|..
T Consensus 73 ~~~~~~i~~~l---~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~--- 145 (213)
T 2plr_A 73 DRYERYILPML---KSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSKRK--- 145 (213)
T ss_dssp HHHHHTHHHHH---HTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHH---hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhccccc---
Confidence 00111112 123568899987653211 11222 22233458999999999999999998 6641
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCC--CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHH
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKD--DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~--~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~ 241 (245)
.++ ++ ++..+..+.+ +..+.+.+++..++..+ .... .+++||++.+++++++.|.+
T Consensus 146 ~~~-~~--------------~g~~~~~~~d~~e~~~~~~~r~~~~~~~~------~~~~-~~~~Id~~~~~e~v~~~I~~ 203 (213)
T 2plr_A 146 IKP-QE--------------AGADIFPGLSPEEGFLKYQGLITEVYDKL------VKDE-NFIVIDGTKTPKEIQIQIRK 203 (213)
T ss_dssp CCT-TT--------------TTTTTCTTSCHHHHHHHHHHHHHHHHHHH------TTTT-TCEEEETTSCHHHHHHHHHH
T ss_pred ccc-cc--------------cccccccccchhhhHHHHHHHHHHHHHHH------HhhC-CEEEEECCCCHHHHHHHHHH
Confidence 011 10 0000111111 01123444444332222 1111 57899999999999999988
Q ss_pred hhc
Q 025970 242 VLS 244 (245)
Q Consensus 242 ~l~ 244 (245)
.+.
T Consensus 204 ~l~ 206 (213)
T 2plr_A 204 FVG 206 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.62 E-value=1.4e-15 Score=121.33 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=95.8
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH---------
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--------- 98 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--------- 98 (245)
..+|++|+|+|+|||||||+++.|++.++..+++++.+ ++. ..+++.+..+..++..+..+++.....+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~ 83 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV 83 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999986555544211 110 0124556667777766544554322211
Q ss_pred --HHHHHcCCCCCCceEEcCCCCCH-H--------HHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcc
Q 025970 99 --IDQAMKKPSCEKGFILDGFPRTV-V--------QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRS 167 (245)
Q Consensus 99 --l~~~l~~~~~~~~~iidg~p~~~-~--------~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~ 167 (245)
+...+. .+..+|+|.+.... . ....+. .+......|+.+|+|++|++++.+|+..+. +
T Consensus 84 ~~i~~~l~---~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~------ 152 (215)
T 1nn5_A 84 PLIKEKLS---QGVTLVVDRYAFSGVAFTGAKENFSLDWCK-QPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E------ 152 (215)
T ss_dssp HHHHHHHH---TTCEEEEESCHHHHHHHHHTSTTCCHHHHH-GGGTTSBCCSEEEEEECCHHHHHHC------C------
T ss_pred HHHHHHHH---CCCEEEEeCCcccHHHHHhhcCCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c------
Confidence 112221 23457788532110 0 011111 111222468999999999999999986331 0
Q ss_pred ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 168 YHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 168 y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+.+ . ..+..++..... ++... ...+++||++.+++++++.|.+.+.
T Consensus 153 -----------------------~~~-~-~~~~~~~~~~~~------~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~ 199 (215)
T 1nn5_A 153 -----------------------RYE-N-GAFQERALRCFH------QLMKDTTLNWKMVDASKSIEAVHEDIRVLSE 199 (215)
T ss_dssp -----------------------TTC-S-HHHHHHHHHHHH------HHTTCTTSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred -----------------------ccc-h-HHHHHHHHHHHH------HHHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 011 1 223333322111 11111 2357899999999999999988764
No 54
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.60 E-value=2.7e-14 Score=117.69 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=99.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH---hCccee--ehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE---YCLCHL--ATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK 104 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~---~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 104 (245)
++++|+|+|+|||||||+++.|++. +|+.++ +.|.+... +......+... + .......+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~-l~~~~~~~e~~---~-------~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES-FPVWKEKYEEF---I-------KKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT-SSSCCGGGHHH---H-------HHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH-HhhhhHHHHHH---H-------HHHHHHHHHHHhh
Confidence 4679999999999999999999998 688777 77655322 11101111110 0 1112223333332
Q ss_pred CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970 105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~ 184 (245)
. ..+|+|+.+........+....... ..|+++|+|++|++++.+|+..|..
T Consensus 72 ---~-~~vIiD~~~~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~~------------------------ 122 (260)
T 3a4m_A 72 ---N-YWVIVDDTNYYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERGE------------------------ 122 (260)
T ss_dssp ---T-SEEEECSCCCSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTTC------------------------
T ss_pred ---C-CEEEEeCCcccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCCC------------------------
Confidence 2 5789999777666666565544433 4578999999999999999988731
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC--ChhHHHHHHHHhhc
Q 025970 185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK--PPKEVTVEVQKVLS 244 (245)
Q Consensus 185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~--~~e~v~~~i~~~l~ 244 (245)
....+.++.....|..-. ..|......++||++. +++++++.|.+.+.
T Consensus 123 --------~~~~~~l~~~~~~~e~~~----~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 123 --------KIPNEVIKKMYEKFDEPG----KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp --------SSCHHHHHHHHHHCCCTT----SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred --------CCCHHHHHHHHHHhcCcc----ccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 112344443333332111 1111123457888876 89999999987764
No 55
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.60 E-value=1.3e-13 Score=106.64 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=93.9
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-------HHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGII 99 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~l 99 (245)
...++.+|+|+|++||||||+++.|+..+|..+++.|++.+.. .+.. ...|..+.+. .+...+
T Consensus 4 ~~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 73 (175)
T 1knq_A 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAA 73 (175)
T ss_dssp CCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHH
Confidence 3456789999999999999999999999999999998763210 0000 0111111110 111122
Q ss_pred HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCcc-EEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCC
Q 025970 100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKID-KVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH 178 (245)
Q Consensus 100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~-~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~ 178 (245)
...+. .+..+|+|...........+ ... .++ .+|+|++|++++.+|+..|..+
T Consensus 74 ~~~~~---~~~~~vi~~~~~~~~~~~~l----~~~--~~~~~vv~l~~~~e~~~~R~~~R~~~----------------- 127 (175)
T 1knq_A 74 FAMQR---TNKVSLIVCSALKKHYRDLL----REG--NPNLSFIYLKGDFDVIESRLKARKGH----------------- 127 (175)
T ss_dssp HHHHH---HCSEEEEECCCCSHHHHHHH----HTT--CTTEEEEEEECCHHHHHHHHHTSTTC-----------------
T ss_pred HHHHh---cCCcEEEEeCchHHHHHHHH----Hhc--CCCEEEEEEECCHHHHHHHHHhccCC-----------------
Confidence 22211 13467887432222232222 222 234 7999999999999999988421
Q ss_pred CCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 179 GFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
....+.+..++..+. +. +|.. ...+.||++.+++++.+.|.+.+.
T Consensus 128 --------------~~~~~~~~~~~~~~~----~~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 128 --------------FFKTQMLVTQFETLQ----EP--GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp --------------CCCHHHHHHHHHHCC----CC--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred --------------CCchHHHHHHHHhhh----Cc--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 111233333322211 10 1222 236789999999999999998875
No 56
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.59 E-value=1.7e-14 Score=114.28 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=95.6
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-------HHHHH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGI 98 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~ 98 (245)
|...++.+|+|+|++||||||+++.|+..+|..+++.+++...... .....|....+. .+...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHH
Confidence 3456778999999999999999999999999999998876321100 001112222211 11122
Q ss_pred HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCC
Q 025970 99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH 178 (245)
Q Consensus 99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~ 178 (245)
+...+. .+..+|+|...........+. .. ..+..+|+|++|++++.+|+..|..+.
T Consensus 94 ~~~~~~---~g~~viid~~~~~~~~~~~l~----~~-~~~~~vv~l~~~~e~l~~Rl~~R~~~~---------------- 149 (200)
T 4eun_A 94 MDARAD---AGVSTIITCSALKRTYRDVLR----EG-PPSVDFLHLDGPAEVIKGRMSKREGHF---------------- 149 (200)
T ss_dssp HHHHHH---TTCCEEEEECCCCHHHHHHHT----TS-SSCCEEEEEECCHHHHHHHHTTCSCCS----------------
T ss_pred HHHHHh---cCCCEEEEchhhhHHHHHHHH----Hh-CCceEEEEEeCCHHHHHHHHHhcccCC----------------
Confidence 222222 234677776544444433322 22 234589999999999999999885211
Q ss_pred CCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 179 GFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
...+.++..+..+ ..+|.. ...+.||++.+++++.+.|.+.|.
T Consensus 150 ---------------~~~~~l~~~~~~~-------~~~~~~-~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 150 ---------------MPASLLQSQLATL-------EALEPD-ESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp ---------------SCGGGHHHHHHHC-------CCCCTT-SCEEEEETTSCHHHHHHHHHHHHC
T ss_pred ---------------CCHHHHHHHHHHh-------CCCCCC-CCeEEEECCCCHHHHHHHHHHHHH
Confidence 1122232222221 112222 136789999999999999998875
No 57
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.59 E-value=8.1e-15 Score=116.19 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=96.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 95 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~----------- 95 (245)
++|+|+|++||||||+++.|++ +|++++++|++++....++......+...+... ..+....+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 999999999988765433333223333322211 01111111
Q ss_pred ---HHHHHH--------HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 96 ---VGIIDQ--------AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 96 ---~~~l~~--------~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
..+... .+........+|+|+....... ....++.+|||++|++++.+|+..|.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~----------~~~~~~~~i~l~~~~e~~~~Rl~~R~----- 145 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG----------TYKNYDKLIVVYAPYEVCKERAIKRG----- 145 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT----------CGGGSSEEEEECCCHHHHHHHHHHTC-----
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC----------chhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 111111 1111111156778874211110 01236899999999999999998762
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.+.+.+..++... .+...++...+ ++||++.+++++.+.|.+.+.
T Consensus 146 -----------------------------~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 146 -----------------------------MSEEDFERRWKKQ----MPIEEKVKYAD--YVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp -----------------------------CCHHHHHHHHTTS----CCHHHHGGGCS--EECCCSSCHHHHHHHHHHHHH
T ss_pred -----------------------------CCHHHHHHHHHhC----CChhHHHhcCC--EEEECCCCHHHHHHHHHHHHH
Confidence 1223444444332 12233333333 568888999999999988764
No 58
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.59 E-value=3.6e-15 Score=125.26 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=81.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE 109 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 109 (245)
|++|+|.|+|||||||+++.|++++ |+.+++.| .++..+...+. +.. ..+...+......++...+...+.....+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 4689999999999999999999985 99999998 55554432111 000 00000000001122333444444221345
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.++|+|+.+....+...+.+.....+ .+..+|+|++|++++.+|+..|.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYG-WKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTT-CEEEEEECCCCHHHHHHHHHHCG
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHHhcc
Confidence 68999999988877777766554443 34589999999999999999885
No 59
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.58 E-value=3.6e-15 Score=119.86 Aligned_cols=177 Identities=13% Similarity=0.039 Sum_probs=91.0
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH-HHHHHHH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV-GIIDQAM 103 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~l~~~l 103 (245)
+...++++|+|.|++||||||+++.|++.++. ..+++-.+.++ ..+++.|..+++++.....+...... -....+.
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~ 93 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRR 93 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999998755 22211000011 23567788888887753224433222 1111221
Q ss_pred cC--------CCCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 104 KK--------PSCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 104 ~~--------~~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
.. +..+..+|.|.|.. .......+..+... ..||++|||++|++++.+|+ .+.
T Consensus 94 ~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~--~~PDl~I~Ldv~~e~~~~Ri-~rd---- 166 (223)
T 3ld9_A 94 EHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID--VYPDITFIIDVDINESLSRS-CKN---- 166 (223)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS--SCCSEEEEEECC----------------
T ss_pred HHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc--CCCCeEEEEeCCHHHHHHHh-ccC----
Confidence 11 11233456675422 22333333333322 68999999999999999998 331
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
|-+.....+..++...+..+ .+.+ .+.+++||++++++++ +.|.+.|
T Consensus 167 ---------------------------r~E~~~~e~~~rv~~~y~~l---a~~~--~~~~~vIDa~~sieeV-~~I~~~l 213 (223)
T 3ld9_A 167 ---------------------------GYEFADMEFYYRVRDGFYDI---AKKN--PHRCHVITDKSETYDI-DDINFVH 213 (223)
T ss_dssp --------------------------------CHHHHHHHHHHHHHH---HHHC--TTTEEEEESSCSSSCC-CHHHHHH
T ss_pred ---------------------------ccccchHHHHHHHHHHHHHH---HHHC--CCCEEEEcCCCCHHHH-HHHHHHH
Confidence 11111122333333222211 1112 2469999999999999 8888776
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 214 ~ 214 (223)
T 3ld9_A 214 L 214 (223)
T ss_dssp H
T ss_pred H
Confidence 4
No 60
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.57 E-value=1.2e-14 Score=112.55 Aligned_cols=156 Identities=22% Similarity=0.213 Sum_probs=91.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDQAMKKPSCEKG 111 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~~~ 111 (245)
+|+|.|+|||||||+++.|++.+|+++++.|.+++.... ... ...+. .|..........++. .+. ....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~-~l~---~~~~ 75 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKV----SEIFEQKRENFFREQEQKMAD-FFS---SCEK 75 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCH----HHHHHHHCHHHHHHHHHHHHH-HHT---TCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCH----HHHHHHcCHHHHHHHHHHHHH-HHH---ccCC
Confidence 689999999999999999999999999999998876421 111 12221 121111111222222 222 2234
Q ss_pred eEEc-CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcccc
Q 025970 112 FILD-GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQ 190 (245)
Q Consensus 112 ~iid-g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~ 190 (245)
+|++ |.+.... .. + . ..+.+|||++|++++.+|+..|... .
T Consensus 76 ~vi~~g~~~~~~-~~-l----~----~~~~~i~l~~~~e~~~~R~~~r~~~----------------------------~ 117 (175)
T 1via_A 76 ACIATGGGFVNV-SN-L----E----KAGFCIYLKADFEYLKKRLDKDEIS----------------------------K 117 (175)
T ss_dssp EEEECCTTGGGS-TT-G----G----GGCEEEEEECCHHHHTTCCCGGGTT----------------------------T
T ss_pred EEEECCCCEehh-hH-H----h----cCCEEEEEeCCHHHHHHHHhcccCC----------------------------C
Confidence 5555 4332211 11 1 1 2368999999999999998776310 0
Q ss_pred CCCCc-HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 191 RKDDT-AQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 191 ~~~~~-~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
|+... .+.++..+. ....+|... ..+.||++ .+++++++.|.+.+.
T Consensus 118 r~~~~~~~~i~~~~~-------~r~~~y~~~-~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 118 RPLFYDEIKAKKLYN-------ERLSKYEQK-ANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp SCTTCCHHHHHHHHH-------HHHHHHHHH-CSEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCCcccHHHHHHHHH-------HHHHHHHhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 12211 333333222 222334321 24778888 799999999998875
No 61
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.57 E-value=1.6e-13 Score=108.29 Aligned_cols=167 Identities=12% Similarity=0.036 Sum_probs=91.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehH----HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH---HHHc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG----DMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---QAMK 104 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~----~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~---~~l~ 104 (245)
++|+|.|++||||||+++.|++.++..++... .+++. ++..+...+.......+. ..+.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~r~~~~~ 66 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQ--------------YYKDLKKTVFKMQIYMLTARSKQLK 66 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHH--------------HTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHH--------------HHhCccccchhHHHHHHHHHHHHHH
Confidence 57999999999999999999999998766421 11111 110000000000001111 1122
Q ss_pred CCCCCCceEEcCCCCCHHH---------------HHHHHHHHHhc----------CCCccEEEEEecCHHHHHHHHhCCc
Q 025970 105 KPSCEKGFILDGFPRTVVQ---------------AEKLDEMLEKQ----------GTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 105 ~~~~~~~~iidg~p~~~~~---------------~~~l~~~~~~~----------~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.......+|+|.++....- ...+..++... +..|+.+|+|++|++++.+|+..|.
T Consensus 67 ~~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 146 (205)
T 2jaq_A 67 QAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG 146 (205)
T ss_dssp ------CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred HhhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 2112235889988764211 11111111111 2468999999999999999998763
Q ss_pred ccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 025970 160 IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239 (245)
Q Consensus 160 ~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i 239 (245)
. ++... .. ..+..++..++. .+.+.|......++||++.+++++++.|
T Consensus 147 r--------------------------~~~~~--~~-~~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~~~~v~~~I 194 (205)
T 2jaq_A 147 R--------------------------SEELL--IG-EEYWETLNKNYE---EFYKQNVYDFPFFVVDAELDVKTQIELI 194 (205)
T ss_dssp C--------------------------HHHHH--SC-HHHHHHHHHHHH---HHHHHHTTTSCEEEEETTSCHHHHHHHH
T ss_pred C--------------------------hhhhc--Cc-HHHHHHHHHHHH---HHHHHccccCcEEEEECCCCHHHHHHHH
Confidence 1 00000 01 123344443333 2334453234578899999999999999
Q ss_pred HHhhc
Q 025970 240 QKVLS 244 (245)
Q Consensus 240 ~~~l~ 244 (245)
.+.+.
T Consensus 195 ~~~l~ 199 (205)
T 2jaq_A 195 MNKLN 199 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 62
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.57 E-value=4.2e-14 Score=113.73 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=72.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH----cCCchH--HHHHHHHH-----------------cC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA----AKTPLG--IKAKEAMD-----------------KG 87 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~----~~~~~~--~~i~~~l~-----------------~~ 87 (245)
+++|+|+|++||||||+++.|++.+|++++++|++++.... .+..+. ..+..... .+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 56899999999999999999999999999999999886542 233221 11111111 11
Q ss_pred CCCCHH-----------------HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHH
Q 025970 88 ELVSDD-----------------LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150 (245)
Q Consensus 88 ~~~~~~-----------------~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~ 150 (245)
..+++. .+...+...........++++||..... . ....++++|||++|+++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--~---------~~~~~d~~i~l~~~~e~ 153 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--V---------VFPDAPVKIFLDASSEE 153 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--C---------CCTTCSEEEEEECCHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--e---------EecCCCEEEEEeCCHHH
Confidence 111111 1222222222222335689999873221 0 11357899999999999
Q ss_pred HHHHHh
Q 025970 151 LEERIT 156 (245)
Q Consensus 151 ~~~R~~ 156 (245)
+.+|..
T Consensus 154 ~~~R~~ 159 (227)
T 1cke_A 154 RAHRRM 159 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999954
No 63
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.56 E-value=3e-14 Score=109.84 Aligned_cols=164 Identities=16% Similarity=0.271 Sum_probs=86.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK 110 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~ 110 (245)
+++|+|+|++||||||+++.|+..++.++++.|.+++... +...+..... .|..........++.. +.. ..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~---~~ 74 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINE-LTE---KQ 74 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHH-HHT---SS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHH-HHh---CC
Confidence 4689999999999999999999999999999998877543 2222221110 0000000001112222 211 23
Q ss_pred ceEEc---CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970 111 GFILD---GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187 (245)
Q Consensus 111 ~~iid---g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~ 187 (245)
.+++. +.+........+. .+++++++++|++++.+|+..|..++
T Consensus 75 ~~v~~~~~~~~~~~~~~~~l~--------~~~~~i~l~~~~~~l~~R~~~r~~r~------------------------- 121 (173)
T 1kag_A 75 GIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP------------------------- 121 (173)
T ss_dssp SEEEECCTTGGGSHHHHHHHH--------HHSEEEECCCCHHHHHSCC------C-------------------------
T ss_pred CeEEECCCeEEecHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC-------------------------
Confidence 45553 2232322222222 13679999999999999998874211
Q ss_pred cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
+....+...+.+...+.. ..+ +|.... -++||++ .+++++++.|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~----r~~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 122 LLHVETPPREVLEALANE----RNP---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp CSSSSCCCHHHHHHHHHH----HHH---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred CCCCCCchHHHHHHHHHH----HHH---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 111111114444443332 222 232212 3678877 799999999998875
No 64
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.56 E-value=4.7e-14 Score=111.38 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=95.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc---CCCCCHHHHHH-------
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK---GELVSDDLVVG------- 97 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~~------- 97 (245)
+.++++|+|+|++||||||+++.|++. |+++++.|++++... .+.. ..+...+.. ...+....+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 356789999999999999999999998 999999999987765 2221 222222210 11222222111
Q ss_pred -----------HH-HHHHcCC-CC-CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970 98 -----------II-DQAMKKP-SC-EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA 163 (245)
Q Consensus 98 -----------~l-~~~l~~~-~~-~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~ 163 (245)
.+ ...+... .. ...+|+|+ |..... .+...++.+|+|++|++++.+|+..|.
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~---------~~~~~~d~~i~l~~~~e~~~~R~~~R~---- 146 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK---------GWEGRLHGTLLVAAPLEERVRRVMARS---- 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT---------TCGGGSSEEEEECCCHHHHHHHHHTTT----
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc---------CchhhCCEEEEEECCHHHHHHHHHHcC----
Confidence 11 0111111 12 34567775 322110 011246899999999999999998763
Q ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970 164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243 (245)
Q Consensus 164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l 243 (245)
..+.+.+..++... .+...++...+ ++||++.+++++++.|.+.+
T Consensus 147 -----------------------------~~~~~~~~~~i~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~ 191 (203)
T 1uf9_A 147 -----------------------------GLSREEVLARERAQ----MPEEEKRKRAT--WVLENTGSLEDLERALKAVL 191 (203)
T ss_dssp -----------------------------CCTTHHHHHHHTTS----CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHH
T ss_pred -----------------------------CCCHHHHHHHHHHC----CChhHHHHhCC--EEEECCCCHHHHHHHHHHHH
Confidence 11222344444331 11222233333 46888889999999998876
Q ss_pred c
Q 025970 244 S 244 (245)
Q Consensus 244 ~ 244 (245)
.
T Consensus 192 ~ 192 (203)
T 1uf9_A 192 A 192 (203)
T ss_dssp H
T ss_pred H
Confidence 4
No 65
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.56 E-value=2.3e-14 Score=114.67 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=104.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-CCCHHHHHH-HHHHHHcC-
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-LVSDDLVVG-IIDQAMKK- 105 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~-~l~~~l~~- 105 (245)
.++++|+|.|++||||||+++.|++.++..+.-+ +. ...++++|+.+++++.... ...+....- ....+...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~----~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL----KF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE----ES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEE----Ee-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998632211 11 1236788999999888654 233322111 11222221
Q ss_pred ------CCCCCceEEcCCCCCH-HHHH-------HHHHH--HHhcCCCccEEEEE-ecCHHHHHHHHhCCcccCCCCccc
Q 025970 106 ------PSCEKGFILDGFPRTV-VQAE-------KLDEM--LEKQGTKIDKVLNF-AIDDSILEERITGRWIHPASGRSY 168 (245)
Q Consensus 106 ------~~~~~~~iidg~p~~~-~~~~-------~l~~~--~~~~~~~~~~vi~L-~~~~e~~~~R~~~r~~~~~~~~~y 168 (245)
+..+..+|.|.|..+. .... .+.++ +...+..||++||| ++|++++.+|+..+. +
T Consensus 78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~------d-- 149 (216)
T 3tmk_A 78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD------E-- 149 (216)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC------C--
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc------c--
Confidence 1123446667653321 1110 12221 11234689999999 999999998865321 0
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHH-HHHHHHhcCcEEEEe-CCCChhHHHHHHHHhhc
Q 025970 169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP-VIDYYAKKGVLAQLH-AEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~-l~~~~~~~~~~~~id-~~~~~e~v~~~i~~~l~ 244 (245)
|-+ . ..+..++...+..+.. ... .....+++|| +++++++|++.|.+.|.
T Consensus 150 ----------------------r~E-~-~~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I~~~i~ 201 (216)
T 3tmk_A 150 ----------------------RYE-T-VKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQIVE 201 (216)
T ss_dssp ----------------------TTC-C-HHHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----------------------ccc-H-HHHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 111 1 2444444433333322 111 1235799999 99999999999988764
No 66
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.55 E-value=2.1e-14 Score=117.49 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=103.0
Q ss_pred HHHHhccCCCC---CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHH
Q 025970 20 LLRRFKCSSKP---DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLV 95 (245)
Q Consensus 20 ~~~~~~~~~~~---~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~ 95 (245)
+++.++....+ +.+|+|+|++||||||+++.|++.+|+.++++|.+++.... +.. +..++.. |........
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e 108 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKE 108 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHH
Confidence 45556555555 77999999999999999999999999999999998876531 222 2222221 221111222
Q ss_pred HHHHHHHHcCCCCCCceEEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC
Q 025970 96 VGIIDQAMKKPSCEKGFILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA 173 (245)
Q Consensus 96 ~~~l~~~l~~~~~~~~~iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~ 173 (245)
...+....... ...+|.+| .+........+. .+.+|||++|++++.+|+..+....
T Consensus 109 ~~~l~~l~~~~--~~~Via~GgG~v~~~~~~~~l~---------~~~vV~L~a~~e~l~~Rl~~~~~~~----------- 166 (250)
T 3nwj_A 109 TEALKKLSLMY--HQVVVSTGGGAVIRPINWKYMH---------KGISIWLDVPLEALAHRIAAVGTGS----------- 166 (250)
T ss_dssp HHHHHHHHHHC--SSEEEECCGGGGGSHHHHHHHT---------TSEEEEEECCHHHHHHHHHC----------------
T ss_pred HHHHHHHHhhc--CCcEEecCCCeecCHHHHHHHh---------CCcEEEEECCHHHHHHHHhhcCCCC-----------
Confidence 22232222210 22344443 344443433221 2689999999999999998632100
Q ss_pred CCCCCCCCCCCCCcccc--CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEE----------eC-CCChhHHHHHHH
Q 025970 174 PPKVHGFDDVTGEPLIQ--RKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL----------HA-EKPPKEVTVEVQ 240 (245)
Q Consensus 174 ~p~~~~~~~~~~~~l~~--~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~i----------d~-~~~~e~v~~~i~ 240 (245)
+++.. ++++..+....++........+ +|...+.++.+ |. +.+++++++.|.
T Consensus 167 ------------Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~ 231 (250)
T 3nwj_A 167 ------------RPLLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAF 231 (250)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHH
T ss_pred ------------CCcccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHH
Confidence 11111 1222223333444444444444 45555545533 43 579999999998
Q ss_pred Hhhc
Q 025970 241 KVLS 244 (245)
Q Consensus 241 ~~l~ 244 (245)
+.+.
T Consensus 232 ~~i~ 235 (250)
T 3nwj_A 232 EQVQ 235 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 67
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.53 E-value=7.9e-14 Score=108.32 Aligned_cols=110 Identities=23% Similarity=0.290 Sum_probs=70.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.++++|+|+|+|||||||+++.|++.+|+.+++++++++.. ......+... .........+...+...+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--- 79 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE--- 79 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH---
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc---
Confidence 35668999999999999999999999999999999988764 1000000000 00112233333444333332
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.++|++......... ..++.+|||++|++++.+|+..|.
T Consensus 80 -g~~vv~~~~~~~~~~-----------~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 -GGVIVDYHGCDFFPE-----------RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp -CCEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred -CCEEEEechhhhcch-----------hcCCEEEEEECCHHHHHHHHHHcC
Confidence 367777543221000 126899999999999999999884
No 68
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.52 E-value=2.7e-13 Score=107.39 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=96.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc----CCch--HHHHHHHHH-----------------cCCC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA----KTPL--GIKAKEAMD-----------------KGEL 89 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~----~~~~--~~~i~~~l~-----------------~~~~ 89 (245)
+|+|+|++||||||+++.|++.+|+++++.|.+.+..... +... ...+...+. .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 8999999999999999999999999999999998775421 2110 011111111 1211
Q ss_pred CCH----H-------------HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHH
Q 025970 90 VSD----D-------------LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152 (245)
Q Consensus 90 ~~~----~-------------~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~ 152 (245)
+.. . .+...+...+.... .++|++|..... .....++++|||++|++++.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~~-----------~~~~~~d~~i~l~a~~e~~~ 150 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMGT-----------AVFPEAAHKFYLTASPEVRA 150 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCCC-----------CCCTTCSEEEEEECCHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEccceeE-----------EEecCCcEEEEEECCHHHHH
Confidence 110 0 11122222222222 578888763320 01134689999999999999
Q ss_pred HHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-C
Q 025970 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-P 231 (245)
Q Consensus 153 ~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~ 231 (245)
+|+..|. ..+.+.+..++......... ++......+.||++. +
T Consensus 151 ~R~~~r~---------------------------------~~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~ 194 (208)
T 3ake_A 151 WRRARER---------------------------------PQAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMT 194 (208)
T ss_dssp HHHHHTS---------------------------------SSCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSC
T ss_pred HHHHhhc---------------------------------ccCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCC
Confidence 9998763 12234454444432111111 001122347889885 9
Q ss_pred hhHHHHHHHHhhc
Q 025970 232 PKEVTVEVQKVLS 244 (245)
Q Consensus 232 ~e~v~~~i~~~l~ 244 (245)
++++.+.|.+.++
T Consensus 195 ~ee~~~~I~~~~~ 207 (208)
T 3ake_A 195 LDEVVAWVLAHIR 207 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 69
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.52 E-value=7.1e-15 Score=120.60 Aligned_cols=171 Identities=14% Similarity=0.110 Sum_probs=97.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc----------eeehHHHHHHHHHcCCchHHHHHHHHHcCC-------C
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC----------HLATGDMLRSAVAAKTPLGIKAKEAMDKGE-------L 89 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~----------~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-------~ 89 (245)
...++++|+|+|++||||||+|+.|++.+|++ ++++|++++.. ..+ .+. ....|. .
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~-----~~~-~~~-~~~~g~~~f~~~~~ 90 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-----TSE-QKA-KALKGQFNFDHPDA 90 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-----CHH-HHH-HHHTTCSCTTSGGG
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc-----Chh-hhh-hhccCCCCCCCcch
Confidence 44567899999999999999999999999987 79999886521 011 111 111121 1
Q ss_pred CCHHHHHHHHHHHHcC---------------------CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCH
Q 025970 90 VSDDLVVGIIDQAMKK---------------------PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD 148 (245)
Q Consensus 90 ~~~~~~~~~l~~~l~~---------------------~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~ 148 (245)
.....+...+...... ......+|+||.+..... .+.. .++.+|||++|+
T Consensus 91 ~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~-------~~d~vi~l~~~~ 161 (252)
T 1uj2_A 91 FDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD-------LFQMKLFVDTDA 161 (252)
T ss_dssp BCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH-------HCSEEEEEECCH
T ss_pred hhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH-------hcCeeEEEeCCH
Confidence 1122233333332211 012356889996542111 1111 247999999999
Q ss_pred HHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHH----HHHhcCcEE
Q 025970 149 SILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVID----YYAKKGVLA 224 (245)
Q Consensus 149 e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~----~~~~~~~~~ 224 (245)
+++++|+..|... .+ +.+.+.+..++..... ..... .....+.++
T Consensus 162 e~~~~R~~~R~~~----------------------------~r-g~~~e~i~~~~~~~~~--~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 162 DTRLSRRVLRDIS----------------------------ER-GRDLEQILSQYITFVK--PAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHH----------------------------HS-CCCHHHHHHHHHHTHH--HHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHHHh----------------------------hh-CCCHHHHHHHHHHhcc--HHHHHHhhhhhhcCcEEE
Confidence 9999999876310 01 2244555544433111 11111 122233332
Q ss_pred --EEeCCCChhHHHHHHHHhhc
Q 025970 225 --QLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 225 --~id~~~~~e~v~~~i~~~l~ 244 (245)
.||++.+++++++.|.+.+.
T Consensus 211 ~~~id~~~s~e~v~~~I~~~l~ 232 (252)
T 1uj2_A 211 PRGADNLVAINLIVQHIQDILN 232 (252)
T ss_dssp ETGGGCHHHHHHHHHHHHHHHH
T ss_pred ecCCCChhHHHHHHHHHHHHHc
Confidence 24888899999999988765
No 70
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.48 E-value=1.5e-13 Score=111.49 Aligned_cols=43 Identities=30% Similarity=0.512 Sum_probs=38.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
++.++.+|+|+|++||||||+++.|++.+|+++++.|.+++..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 4567889999999999999999999999999999999998864
No 71
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.48 E-value=2.2e-14 Score=114.03 Aligned_cols=170 Identities=13% Similarity=0.104 Sum_probs=98.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcC---CCCCHHHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG---ELVSDDLVVGIIDQA 102 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~l~~~ 102 (245)
...++.+|+|+|++||||||+++.|++.+ ++.+++.|+++...... ..+. ..+... ..+....+...+...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETDK---NGFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBCT---TSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hccc---cCCChhHHHHHhHHHHHHHHHHHH
Confidence 34567899999999999999999999988 89999998876431100 0000 000000 001111222222221
Q ss_pred HcC------------CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccc
Q 025970 103 MKK------------PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHT 170 (245)
Q Consensus 103 l~~------------~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~ 170 (245)
+.. ......+|+||.+... ... ....|+.+|++++|++++.+|+..|....
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~-------~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-------- 154 (207)
T 2qt1_A 92 MESARHSVVSTDQESAEEIPILIIEGFLLFN--YKP-------LDTIWNRSYFLTIPYEECKRRRSTRVYQP-------- 154 (207)
T ss_dssp HHHHTTSSCCC-----CCCCEEEEECTTCTT--CGG-------GTTTCSEEEEEECCHHHHHHHHHHSCCSS--------
T ss_pred HhCCCCCCcCCCeeecCCCCEEEEeehHHcC--cHH-------HHHhcCeeEEEECCHHHHHHHHHHcCCCc--------
Confidence 111 0113468899964331 111 11457899999999999999997764211
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCcHHHHH-HHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 171 KFAPPKVHGFDDVTGEPLIQRKDDTAQVLK-SRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 171 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
+...+.+. +....| ....+++.. .+.++.||++.+++++++.|.+.+.
T Consensus 155 ----------------------e~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 155 ----------------------PDSPGYFDGHVWPMY----LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp ----------------------CCCTTHHHHTHHHHH----HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred ----------------------cchHHHHHHHHhHHH----HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 00111122 112222 223344443 3567889999999999999998875
No 72
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.45 E-value=2.7e-13 Score=108.55 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=36.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA 69 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~ 69 (245)
|++|+|+|++||||||+++.|++.+|+++++.|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 578999999999999999999999999999999998864
No 73
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.44 E-value=8.5e-13 Score=103.03 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=66.9
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH--H
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--I 99 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--l 99 (245)
...++++|+|+|+|||||||+++.|++.++ +.+++.|.+ +..+.....+...-. ..++..+ +
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~ 77 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREER----------LRHLKRIAWI 77 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHH----------HHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhH----------HHHHHHHHHH
Confidence 345688999999999999999999999885 356676544 332111100000000 0011111 1
Q ss_pred HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970 100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT 156 (245)
Q Consensus 100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~ 156 (245)
...+. ..+..+|+|+..........+..++...+ .|+.+|||++|++++.+|+.
T Consensus 78 ~~~~~--~~g~~vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 78 ARLLA--RNGVIVICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHHH--TTTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred HHHHH--hCCCEEEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence 11111 12234556775544444444444444443 57899999999999999974
No 74
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.43 E-value=1.8e-12 Score=101.92 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=39.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA 72 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~ 72 (245)
.-++|.|+|++||||||+++.|++.+|++++++|+++++...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 4578999999999999999999999999999999999887664
No 75
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.43 E-value=1.4e-12 Score=103.40 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=93.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC-----------------CHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV-----------------SDD 93 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~-----------------~~~ 93 (245)
.++|.|.|++||||||+++.||+++|+++++ +++++..... . |-.....-..+... .+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~--g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-G--RYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQD 81 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC------------------------------------CH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-c--CCCHHHHHHHhhhchhHHHHHhccccccccccHH
Confidence 4589999999999999999999999999999 7787653211 1 11000000001100 011
Q ss_pred HHHHHHHHHHcCCC--CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccccc
Q 025970 94 LVVGIIDQAMKKPS--CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTK 171 (245)
Q Consensus 94 ~~~~~l~~~l~~~~--~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~ 171 (245)
+ .......+..+. ...++|++|-. ... ++.. ....+.|||++|++++.+|+..+.
T Consensus 82 ~-~~~~~~~i~~la~~~~~~~Vi~Gr~--g~~------vl~~--~~~~~~V~L~A~~e~r~~R~~~~~------------ 138 (201)
T 3fdi_A 82 I-AIRQFNFIRKKANEEKESFVIVGRC--AEE------ILSD--NPNMISAFILGDKDTKTKRVMERE------------ 138 (201)
T ss_dssp H-HHHHHHHHHHHHHTSCCCEEEESTT--HHH------HTTT--CTTEEEEEEEECHHHHHHHHHHHH------------
T ss_pred H-HHHHHHHHHHHHhhcCCCEEEEECC--cch------hcCC--CCCeEEEEEECCHHHHHHHHHHHh------------
Confidence 1 122222222222 23467887642 111 1111 112589999999999999998652
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc------CcEEEEeCC-CChhHHHHHHHHhhc
Q 025970 172 FAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKK------GVLAQLHAE-KPPKEVTVEVQKVLS 244 (245)
Q Consensus 172 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~------~~~~~id~~-~~~e~v~~~i~~~l~ 244 (245)
+.+.+.+..++........+..+.|... ..-+.||++ .+++++++.|.+.++
T Consensus 139 ---------------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 139 ---------------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp ---------------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1234455555555444455544444110 112556664 699999999988775
No 76
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.43 E-value=7.3e-12 Score=99.24 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=88.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCH-------
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVA---AKTP----LGIKAKEAMDKGELVSD------- 92 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~---~~~~----~~~~i~~~l~~~~~~~~------- 92 (245)
..++++|+|+|+|||||||+++.|++.++- ...+.....|+.-. .+.. -...+...+..+..+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence 356779999999999999999999998842 11111111000000 0000 00111111222221110
Q ss_pred -HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCC-ccEEEEEe-cCHHHHHHHHhCCcccCCCCcccc
Q 025970 93 -DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTK-IDKVLNFA-IDDSILEERITGRWIHPASGRSYH 169 (245)
Q Consensus 93 -~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~-~~~vi~L~-~~~e~~~~R~~~r~~~~~~~~~y~ 169 (245)
......+...+. .+..+|+|+.+....+ +. ..... ...+|||+ +|++++.+|+..|.
T Consensus 89 ~~~~~~~i~~~l~---~g~~vi~d~~~~~~~~---l~----~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~---------- 148 (204)
T 2qor_A 89 YGTLKSEYDLAVG---EGKICLFEMNINGVKQ---LK----ESKHIQDGIYIFVKPPSIDILLGRLKNRN---------- 148 (204)
T ss_dssp EEEEHHHHHHHHH---TTCEEEEECCHHHHHH---HH----HCSSCSCCEEEEEECSCHHHHHHHHHTCT----------
T ss_pred ecCCHHHHHHHHH---cCCeEEEEECHHHHHH---HH----HhcCCCCeEEEEEcCCCHHHHHHHHHHcC----------
Confidence 000112222332 2457889875533322 21 11110 13789998 99999999998874
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.++.+.+++|+...+...... +....+ ++.++ + +++++++.|.+.|.
T Consensus 149 -----------------------~~~~~~i~~rl~~~~~~~~~~--~~~~~d-~vi~n-~-~~e~~~~~i~~~i~ 195 (204)
T 2qor_A 149 -----------------------TEKPEEINKRMQELTREMDEA--DKVGFN-YFIVN-D-DLARTYAELREYLL 195 (204)
T ss_dssp -----------------------TSCHHHHHHHHHHHHHHHHHH--HHHTCS-EEEEC-S-SHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHHHh--hhccCc-EEEEC-c-CHHHHHHHHHHHHH
Confidence 234577888877665433221 222223 44444 4 89999999988764
No 77
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.41 E-value=2.1e-13 Score=112.46 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=28.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh-Cccee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHL 60 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i 60 (245)
.++++|+|.|++||||||+++.|++.+ ++.++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 567899999999999999999999998 66665
No 78
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.41 E-value=4e-13 Score=107.12 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=65.8
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH---H
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV---G 97 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~ 97 (245)
...++++|+|.|++||||||+++.|++.++ +.+++.+.+ +..+.....+...-. ...+. .
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r----------~~~~~~~~~ 89 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADR----------NENIRRIAE 89 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHH----------HHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHH----------HHHHHHHHH
Confidence 345678999999999999999999999886 777876544 322211100100000 01111 1
Q ss_pred HHHHHHcCCCCCCceEEcCCCCC-HHHHHHHHHHHHh-----cCCCccEEEEEecCHHHHHHHH
Q 025970 98 IIDQAMKKPSCEKGFILDGFPRT-VVQAEKLDEMLEK-----QGTKIDKVLNFAIDDSILEERI 155 (245)
Q Consensus 98 ~l~~~l~~~~~~~~~iidg~p~~-~~~~~~l~~~~~~-----~~~~~~~vi~L~~~~e~~~~R~ 155 (245)
.+...+. .+..+|+| ++.. ......+..+... ....|+++|||++|++++.+|+
T Consensus 90 ~~~~~l~---~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 90 VAKLFAD---SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHHH---CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 1222222 23457778 5432 2233334443321 1135789999999999999995
No 79
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.39 E-value=9.9e-12 Score=101.83 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV 70 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~ 70 (245)
.++.+|+|+|++||||||+++.|++++|+.+++.+.+++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 456799999999999999999999999999999999986643
No 80
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.39 E-value=8.6e-12 Score=100.27 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=95.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCC-c------hHHHHHH-H---HHcC------------
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKT-P------LGIKAKE-A---MDKG------------ 87 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~-~------~~~~i~~-~---l~~~------------ 87 (245)
.++|.|.|++||||||+++.|++++|+++++ .++++....... . .+..... + +..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 5799999999999999999999999999999 566666544311 0 0111000 0 0000
Q ss_pred -CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCc
Q 025970 88 -ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGR 166 (245)
Q Consensus 88 -~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~ 166 (245)
....++.+.......+..+....++|+.|..-.. .+. .+.. ..-.+.|||++|.+++.+|+..+.
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~----vl~-~~~~--~~~~~~VfL~A~~e~r~~Ri~~~~------- 158 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY----VLD-QDED--IERLIRIFVYTDKVKKVQRVMEVD------- 158 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSCEEEESTTHHH----HHH-HCTT--CCEEEEEEEECCHHHHHHHHHHHH-------
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch----hcc-cccC--CCCeEEEEEECCHHHHHHHHHHhc-------
Confidence 0001111112222222222222456776542111 010 0011 122589999999999999998652
Q ss_pred cccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh------cCcEEEEeCC-CChhHHHHHH
Q 025970 167 SYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK------KGVLAQLHAE-KPPKEVTVEV 239 (245)
Q Consensus 167 ~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~------~~~~~~id~~-~~~e~v~~~i 239 (245)
+-+.+...+++....+...+...+|.. ...-+.||++ .+++++++.|
T Consensus 159 --------------------------~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I 212 (223)
T 3hdt_A 159 --------------------------CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELI 212 (223)
T ss_dssp --------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHH
Confidence 112345556666555556665554421 1112567764 6999999999
Q ss_pred HHhhc
Q 025970 240 QKVLS 244 (245)
Q Consensus 240 ~~~l~ 244 (245)
.+.++
T Consensus 213 ~~~i~ 217 (223)
T 3hdt_A 213 KAYIR 217 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 81
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.37 E-value=5.9e-11 Score=99.07 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=86.8
Q ss_pred ccCCCChhhHHHHHHHHhcc---CCCCCcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHH
Q 025970 7 ALEDVPSVDMMTELLRRFKC---SSKPDKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAK 81 (245)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~ 81 (245)
.+++........++...+.. ...+|.+|+|.|+|||||||+++.|++.+ ++.+||.|.+ +.... .....+.
T Consensus 6 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~---~~~~~~~ 81 (287)
T 1gvn_B 6 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHP---NFDELVK 81 (287)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTST---THHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhch---hhHHHHH
Confidence 34444455566666666553 33468899999999999999999999998 7889998655 22110 0000111
Q ss_pred HHHHcC----CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHH----HH
Q 025970 82 EAMDKG----ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL----EE 153 (245)
Q Consensus 82 ~~l~~~----~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~----~~ 153 (245)
.+.... ......+....+...+. .+..+|+|+......+...+...+...|. +..+++|.+|++++ .+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~~~v~~~l~---~g~~vIld~~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~p~~~~~l~~~~ 157 (287)
T 1gvn_B 82 LYEKDVVKHVTPYSNRMTEAIISRLSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGY-ETKMYVMAVPKINSYLGTIE 157 (287)
T ss_dssp HHGGGCHHHHHHHHHHHHHHHHHHHHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTC-EEEEEEECCCHHHHHHHHHH
T ss_pred HccchhhhhhhHHHHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHhCCC-cEEEEEEECCHHHHHHHHHH
Confidence 110000 00001112223333332 24579999988887666555555554443 33578999999999 88
Q ss_pred HHhCCc
Q 025970 154 RITGRW 159 (245)
Q Consensus 154 R~~~r~ 159 (245)
|+..|.
T Consensus 158 Rl~~R~ 163 (287)
T 1gvn_B 158 RYETMY 163 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987664
No 82
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.35 E-value=2e-11 Score=94.31 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=65.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHHHHHcC--CchHHHHHHHHHcCCC-CCH---HHH---HHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRSAVAAK--TPLGIKAKEAMDKGEL-VSD---DLV---VGII 99 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~~~~~~--~~~~~~i~~~l~~~~~-~~~---~~~---~~~l 99 (245)
+++|+|+|+|||||||+++.|++.++..++ +.|.++....... ...+..+. ..+.. ... ... ...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHHH
Confidence 568999999999999999999999976554 5776654321100 00000000 00000 001 111 1112
Q ss_pred HHHHcCCCCCCceEEcCCCC-CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 100 DQAMKKPSCEKGFILDGFPR-TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 100 ~~~l~~~~~~~~~iidg~p~-~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
..... .+..+|+++... .......+.+.+. ..+..+|+|++|.+++.+|+..|.
T Consensus 80 ~~~~~---~g~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 VAMAR---AGARIIIDDVFLGGAAAQERWRSFVG---DLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHH---TTCEEEEEECCTTTHHHHHHHHHHHT---TCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHh---cCCeEEEEeccccChHHHHHHHHHhc---CCcEEEEEEECCHHHHHHHHHhhC
Confidence 22221 234588888543 2232333333332 223468899999999999998874
No 83
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.34 E-value=1.7e-12 Score=104.91 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=40.0
Q ss_pred cCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHH
Q 025970 134 QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213 (245)
Q Consensus 134 ~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l 213 (245)
.+..||++|||++|++++++|+..|.... .+ ... ..+.+++..++..+.
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~---------------------------e~-~~~-~~~~~rv~~~~~~~~-- 191 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRARSE---------------------------ES-CVP-LKYLQELHELHEDWL-- 191 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHCCGG---------------------------GT-TCC-HHHHHHHHHHHHHHH--
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcCCcc---------------------------cc-cCc-HHHHHHHHHHHHHHH--
Confidence 45789999999999999999998663100 00 011 234455544443332
Q ss_pred HHHH-HhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 214 IDYY-AKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 214 ~~~~-~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
..++ ...+.+++||++.+++++++.|.+.++
T Consensus 192 ~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSES 223 (230)
T ss_dssp TSCCSSCCCEEEEEECCC--------------
T ss_pred HHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 1111 233468999999999999999988764
No 84
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.32 E-value=8.9e-12 Score=102.15 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=77.2
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHc----CCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAA----KTPLGIKAKEAMDKGELVSDDLVVGIID 100 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~l~ 100 (245)
...+|.+|+|.|+|||||||+++.|++.++ ..+++.|.+ +..... ....|..+..+.... ...++..++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~ 103 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVT 103 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHH
Confidence 345688999999999999999999999986 566777654 221100 001111111111100 0112222222
Q ss_pred HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
..+. .+.++|+|+++....+...+...+...+..+ .++++++|++++.+|+..|.
T Consensus 104 ~~~~---~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 104 KLSS---LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHH---TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHHH
T ss_pred HHHh---cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHHH
Confidence 2222 2347999999988877776666666665433 56788999999999998875
No 85
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.31 E-value=5e-12 Score=110.91 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=78.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
..+.+|+|+|+|||||||+++.|++.+++.+++.|.+- . ...+...+...+. .
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~---~ 308 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR---Q 308 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH---T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh---c
Confidence 45789999999999999999999999999999998750 0 1112222333332 2
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI 160 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~ 160 (245)
+..+|+|+......+...+..++...+. +..+|+|++|.+++.+|+..|..
T Consensus 309 g~~vIiD~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 GKRVVIDNTNPDVPSRARYIQCAKDAGV-PCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHHTC-CEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCCHHHHHHHHHhhcc
Confidence 4578999998888877777766655544 34789999999999999998864
No 86
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.26 E-value=2.5e-11 Score=94.03 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=63.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehH-HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH--HH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATG-DMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID--QA 102 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~-~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~--~~ 102 (245)
.++++|+|+|++||||||+++.|++.+ |++++.++ +.++..+.....+...- .+..+.++.. ..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHH
Confidence 467899999999999999999999988 87776443 22322111000000000 0112222111 11
Q ss_pred HcCCCCCCceEEcCCCCCH-HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970 103 MKKPSCEKGFILDGFPRTV-VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR 158 (245)
Q Consensus 103 l~~~~~~~~~iidg~p~~~-~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r 158 (245)
+.. ...+++.++.... .....+..++...+ .|+.+|+|++|++++.+|+..+
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 73 FAD---AGLVCITSFISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHH---TTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCTTS
T ss_pred HHH---CCCEEEEecCCcchHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHHHhhh
Confidence 211 1124444443322 22222333333333 5789999999999999998654
No 87
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.25 E-value=1.2e-10 Score=94.00 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=37.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV 70 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~ 70 (245)
..+++|+|.|++||||||+++.|++.+|+.+++.+.+.+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 356899999999999999999999999999999999887743
No 88
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.21 E-value=2e-10 Score=90.60 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=63.5
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHh---Ccc--eeehHHHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHH--
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CLC--HLATGDMLRSAVAAKTPLG-IKAKEAMDKGELVSDDLVVG-- 97 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~--~i~~~~li~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~-- 97 (245)
+...++.+|+|.|++||||||+++.|+..+ |.. +++.+++.. .+.....+. .... .++..
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~-----------~~~~~~~ 87 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRA-----------ENIRRVG 87 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHH-----------HHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHH-----------HHHHHHH
Confidence 344667899999999999999999999998 655 788766532 111100000 0000 01111
Q ss_pred HHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970 98 IIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI 155 (245)
Q Consensus 98 ~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~ 155 (245)
.+...+.. ....++.+...........+...+ .......|||++|.+++.+|.
T Consensus 88 ~~~~~~~~--~~~~vi~~~~~~~~~~r~~~~~~~---~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 88 EVAKLFAD--AGIICIASLISPYRTDRDACRSLL---PEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHHHH--TTCEEEEECCCCCHHHHHHHHHTS---CTTSEEEEEECCCHHHHHHHC
T ss_pred HHHHHHHh--CCceEEEecCCchHHHHHHHHHhc---CCCCEEEEEEeCCHHHHHHhc
Confidence 11111111 223455555444444444443321 112336799999999999997
No 89
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.21 E-value=7.8e-10 Score=89.74 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh-Ccc
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY-CLC 58 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~-~~~ 58 (245)
+|++|+|.|++||||||+++.|++.+ +..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 47899999999999999999999998 543
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.12 E-value=2.6e-10 Score=104.04 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=65.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehH-HHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATG-DMLRSAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIIDQAM 103 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~-~li~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~l~~~l 103 (245)
.++++|+|+|+|||||||+++.|++.+ |+.++.+| +.++..+..+..+. ..-...+. .+..++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHH
Confidence 368899999999999999999999999 88776654 44443222111111 00000000 0111111112
Q ss_pred cCCCCCCceEEcCCCCC-HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970 104 KKPSCEKGFILDGFPRT-VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG 157 (245)
Q Consensus 104 ~~~~~~~~~iidg~p~~-~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~ 157 (245)
. .+..+|.+ +... ......+..++... ..+.++|||++|++++.+|+..
T Consensus 122 ~---~G~iVI~d-~~s~~~~~r~~~r~ll~~~-g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 122 D---AGLVCITS-FISPYTQDRNNARQIHEGA-SLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp H---TTCEEEEE-CCCCCHHHHHHHHHHHHTT-TCCEEEEEEECCHHHHHHHCTT
T ss_pred h---CCCEEEEe-CchhhHHHHHHHHHHHHhC-CCCeEEEEEECCHHHHHHHhcc
Confidence 1 12233334 3322 22334444444333 3467899999999999999864
No 91
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.10 E-value=1.5e-10 Score=104.22 Aligned_cols=125 Identities=12% Similarity=0.107 Sum_probs=74.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCC----CCHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII 99 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~l 99 (245)
..+.+|+|+|.|||||||+++.|++.+++ .+++.|++.+......... +++..... ....+....+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999854 3478888665543221100 11110000 0011111122
Q ss_pred HHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC-HHHHHHHHhCCc
Q 025970 100 DQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID-DSILEERITGRW 159 (245)
Q Consensus 100 ~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~-~e~~~~R~~~r~ 159 (245)
......+ ..+..+|+|+......+...+...+...+. ..++|++.|+ ++++.+|+..|.
T Consensus 108 ~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 108 RDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhhh
Confidence 2111111 234578999998888888777666655543 2356777777 778888887654
No 92
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.07 E-value=1.3e-10 Score=105.08 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=66.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQA 102 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~ 102 (245)
...+++|+|+|++||||||+++.|++.++. .+++.|. +++.+..+..+...-.... -..+...+...
T Consensus 369 ~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~ 440 (546)
T 2gks_A 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRITN-------ILRVGFVASEI 440 (546)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHH
T ss_pred cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHHHH-------HHHHHHHHHHH
Confidence 345789999999999999999999998863 6777754 4543322111111000000 00111122222
Q ss_pred HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCcc-EEEEEecCHHHHHHHHh
Q 025970 103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKID-KVLNFAIDDSILEERIT 156 (245)
Q Consensus 103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~-~vi~L~~~~e~~~~R~~ 156 (245)
+. .+.++|+|+..........+...+ ..++ .+|+|++|.+++.+|+.
T Consensus 441 l~---~G~~VI~d~~~~~~~~r~~~~~~l----~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 441 VK---HNGVVICALVSPYRSARNQVRNMM----EEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HH---TTCEEEEECCCCCHHHHHHHHTTS----CTTCEEEEEEECCGGGHHHHCC
T ss_pred Hh---CCCEEEEEcCCCCHHHHHHHHHHh----hcCCEEEEEEeCCHHHHHHHhh
Confidence 22 245788886443333333333221 1246 89999999999999976
No 93
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.03 E-value=3.1e-09 Score=83.63 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.++.+|+|+||+||||||+++.|+..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999999998764
No 94
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.02 E-value=3.6e-11 Score=95.52 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
++|+|.|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999853
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=2.4e-09 Score=84.94 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+++.+|+|+||+||||||+++.|+..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999999998874
No 96
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.97 E-value=1.1e-08 Score=80.59 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=24.9
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+..++.+|+|+|++||||||+++.|+..+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999999999876
No 97
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.96 E-value=7.5e-09 Score=81.29 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=72.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCC--c-------------hHHHHHHHHHcCCCC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKT--P-------------LGIKAKEAMDKGELV 90 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~--~-------------~~~~i~~~l~~~~~~ 90 (245)
.+.++|+|+|.|||||+|+++.|.+.+| +.++++++.+++...... . +++.+......-...
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 3778999999999999999999998885 778999999986433111 1 111111000000000
Q ss_pred CHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970 91 SDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI 155 (245)
Q Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~ 155 (245)
....+..+. +... ....|||||. +.......|.+.+. ..-.+|.+.+|+++..+|.
T Consensus 89 d~~~~~~~~---~~~~-~~~~vII~dv-R~~~Ev~~fr~~~g----~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 89 DPGFFCRKI---VEGI-SQPIWLVSDT-RRVSDIQWFREAYG----AVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp CTTTTHHHH---SBTC-CCSEEEECCC-CSHHHHHHHHHHHG----GGEEEEEEEECHHHHHHTT
T ss_pred CchHHHHHH---HHhc-CCCcEEEeCC-CCHHHHHHHHHhCC----CcEEEEEEECCHHHHHHHh
Confidence 000111111 1111 2246899997 77777777766431 2236899999999999993
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.95 E-value=2.2e-09 Score=97.48 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHcCCchHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAAKTPLGIKAK-EAMDKGELVSDDLVVGIIDQ 101 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~l~~ 101 (245)
.++++|+|+|+|||||||+++.|++.++ +.+++.|. ++..+..+..+...-+ ..+ ..+...+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTNI--------QRIAFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence 4578999999999999999999999976 35666644 4443221111100000 000 001112222
Q ss_pred HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970 102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT 156 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~ 156 (245)
... .+..+|.+...........+..++...+ +.++|||++|.+++.+|..
T Consensus 465 ~~~---~g~~VI~~~is~~~~~R~~~r~l~~~~g--~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 465 LTR---AGAAVIAAPIAPYEESRKFARDAVSQAG--SFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHH---TTCEEEEECCCCCHHHHHHHHHHHHTTS--EEEEEEECCCHHHHHHHCS
T ss_pred HHh---CCCEEEEEcCCCcHHHHHHHHHHHHhcC--CeEEEEEeCCHHHHHHHhc
Confidence 221 1234555533222333334444443322 4589999999999999953
No 99
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.88 E-value=3.6e-09 Score=86.57 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=68.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHH-HHH--cCCchHHHHHH---HHHcC-----CCCCHHHHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRS-AVA--AKTPLGIKAKE---AMDKG-----ELVSDDLVVGIID 100 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~-~~~--~~~~~~~~i~~---~l~~~-----~~~~~~~~~~~l~ 100 (245)
++|+|.|++||||||+++.|++.++..+++.|.+... ... ...+....... .+..- ..+....+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 3789999999999999999999999999999876311 000 00000000000 00000 0122233333344
Q ss_pred HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHh----cCCCccEEEEEecCH-HHHHHHHhCCc
Q 025970 101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEK----QGTKIDKVLNFAIDD-SILEERITGRW 159 (245)
Q Consensus 101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~----~~~~~~~vi~L~~~~-e~~~~R~~~r~ 159 (245)
..+.-...+..+|+++... . .+..++.. .+. ...+|||++|. +++.+|+.+|.
T Consensus 82 ~~i~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~-~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGF-QWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHHTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSC-EEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccHH--H---HHHHHHhcccccccC-ceEEEEecchhHHHHHHHHHHHH
Confidence 4442223345677775432 1 22223322 112 23799999997 99999999885
No 100
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.85 E-value=6.4e-08 Score=75.22 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=63.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVAAK--TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC 108 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~ 108 (245)
.+++|+|++||||||+++.|+..++. .+++.+++.... ..+ .+....... . .+ .+.+......... .
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~-~----~~-~~~l~~~~~~~~~---~ 72 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWESDELL-A----LT-WKNITDLTVNFLL---A 72 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHH-H----HH-HHHHHHHHHHHHH---T
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCccchhHH-H----HH-HHHHHHHHHHHHh---c
Confidence 47899999999999999999988754 788887654320 000 000000000 0 00 0011111111111 1
Q ss_pred CCceEEcCCCCCHHHHHHHHHHHHhcCCC-ccEEEEEecCHHHHHHHHhCCc
Q 025970 109 EKGFILDGFPRTVVQAEKLDEMLEKQGTK-IDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~-~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...+|+|++. .......+...+...+.. ...+++|.+|++.+.+|...|.
T Consensus 73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 2357888853 333333333332211222 3357889999999999998875
No 101
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.84 E-value=5.8e-09 Score=81.29 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=86.5
Q ss_pred EEEECCCCCChhHHHHHHHhHhC-cceeehHHHHHHHHHcCC----ch----HHHHHHHHHcCCCCCHH--------HHH
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYC-LCHLATGDMLRSAVAAKT----PL----GIKAKEAMDKGELVSDD--------LVV 96 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~-~~~i~~~~li~~~~~~~~----~~----~~~i~~~l~~~~~~~~~--------~~~ 96 (245)
|+|+||+||||||+++.|.+.+. ...++....-|. ..++. .+ ...+...+.+|..+... +..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 78999999999999999998874 233333222111 00011 10 12444444544432110 011
Q ss_pred HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCC
Q 025970 97 GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPK 176 (245)
Q Consensus 97 ~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~ 176 (245)
..+...+.. ++.+|+|.-+....+. ... .+..+..++.+..|.+++.+|+..|.
T Consensus 83 ~~v~~~l~~---g~~vil~id~~g~~~~---k~~---~~~~~~~Ifi~pps~e~L~~RL~~Rg----------------- 136 (186)
T 1ex7_A 83 ASVKQVSKS---GKTCILDIDMQGVKSV---KAI---PELNARFLFIAPPSVEDLKKRLEGRG----------------- 136 (186)
T ss_dssp HHHHHHHHH---TSEEEEECCHHHHHHH---HTC---GGGCCEEEEEECSCHHHHHHHHHHHC-----------------
T ss_pred ceeeehhhC---CCEEEecCCHHHHHHH---HHh---cccCceEEEEeCCCHHHHHHHHHhcC-----------------
Confidence 112222221 3456777543222222 111 11234344445566789999998874
Q ss_pred CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970 177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244 (245)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 244 (245)
.++.+.+++|+......... +....-.++.++ .++++.++.|.++|.
T Consensus 137 ----------------~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 137 ----------------TETEESINKRLSAAQAELAY---AETGAHDKVIVN--DDLDKAYKELKDFIF 183 (186)
T ss_dssp ----------------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred ----------------CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence 45778899999876543321 111111245554 478999999988874
No 102
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.84 E-value=2.7e-08 Score=84.25 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
.++++|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35789999999999999999999999854
No 103
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.83 E-value=3.8e-09 Score=83.29 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhcc-CCCCCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHH
Q 025970 14 VDMMTELLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDM 65 (245)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~l 65 (245)
.+.++.++..+.. .+.++.+|+|+|++||||||+++.|+..+ +. .+++.|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 3566777776664 45678899999999999999999999875 43 34455543
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.81 E-value=2.2e-08 Score=79.24 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=32.8
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDML 66 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li 66 (245)
...++.+|+|+|++||||||+++.|+..++ +.+++.+..+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 345778999999999999999999999988 8888876543
No 105
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.76 E-value=1.2e-07 Score=73.68 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
|.+++|+||+||||||+++.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34789999999999999999997653
No 106
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.71 E-value=1.3e-07 Score=78.65 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK 104 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 104 (245)
...+++|+|.|..||||||+++.|.+.++ +.++.+. .+-+.... . ..+...+.
T Consensus 83 ~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~--------~yl~R~~~ 138 (304)
T 3czq_A 83 TGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------Q--------WYFQRYVA 138 (304)
T ss_dssp HCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------S--------CTTHHHHT
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------c--------hHHHHHHH
Confidence 35699999999999999999999999984 4344331 11111111 0 11122344
Q ss_pred CCCC-CCceEEcCCC------------CCH-------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970 105 KPSC-EKGFILDGFP------------RTV-------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS 164 (245)
Q Consensus 105 ~~~~-~~~~iidg~p------------~~~-------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~ 164 (245)
.++. +.-+|.|.+- ... .+...|+..+...| .|++.++|++|+++..+|+..|..++..
T Consensus 139 ~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~dp~k 217 (304)
T 3czq_A 139 TFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRHDPLK 217 (304)
T ss_dssp TCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHHCTTT
T ss_pred hcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhcCccc
Confidence 4432 2334555321 111 12233434455455 6899999999999999999887533211
Q ss_pred CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCCh---hHHHHH
Q 025970 165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPP---KEVTVE 238 (245)
Q Consensus 165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~---e~v~~~ 238 (245)
+=..+...++ .....|.+....+...-+ ....|++|+++.+. ..+...
T Consensus 218 --------------------------~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~ 271 (304)
T 3czq_A 218 --------------------------IWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRH 271 (304)
T ss_dssp --------------------------GGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHH
T ss_pred --------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHH
Confidence 0011222222 223444444444444332 23479999999865 345555
Q ss_pred HHHhh
Q 025970 239 VQKVL 243 (245)
Q Consensus 239 i~~~l 243 (245)
|.+.|
T Consensus 272 Il~~l 276 (304)
T 3czq_A 272 MLTKL 276 (304)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55544
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.67 E-value=7e-07 Score=72.37 Aligned_cols=39 Identities=18% Similarity=0.015 Sum_probs=28.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
+++.++.+..++.+|.|+|++||||||+++.|+..+|..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 566677777888999999999999999999999988865
No 108
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.67 E-value=3.1e-07 Score=81.59 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCC----CCHHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII 99 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~l 99 (245)
..+.+|+|+|.|||||||+++.|++.++ ...++.+.+.+......... +++..... ....+....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999875 45666666544432110100 00000000 0011222222
Q ss_pred ---HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEe---cCHHHHHHHHhCC
Q 025970 100 ---DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFA---IDDSILEERITGR 158 (245)
Q Consensus 100 ---~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~---~~~e~~~~R~~~r 158 (245)
...+.. ..+..+|+|.......+...+...+...+. .+++|+ .+++.+.+|+..+
T Consensus 112 ~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 112 NDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHh
Confidence 222211 223568999987888777777665554432 356666 4578888888754
No 109
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=8.5e-08 Score=77.05 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHH-hHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK-DEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La-~~~ 55 (245)
...+++..++.+|+|+||+||||||+++.|+ ..+
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445566778899999999999999999999 665
No 110
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.61 E-value=1.2e-07 Score=85.70 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=54.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHcCCchHH-HHHHHHHcCCCCCHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAAKTPLGI-KAKEAMDKGELVSDDLVVGII 99 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~l 99 (245)
...++.+|+|+|++||||||+++.|+..++ +.+++.+.+... +..+..+.. .....+ ..+..+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~--------r~i~~v~ 435 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNV--------RRIGFVA 435 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHH--------HHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHH--------HHHHHHH
Confidence 345778999999999999999999999884 445777665432 111100000 000000 0011111
Q ss_pred HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970 100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT 156 (245)
Q Consensus 100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~ 156 (245)
+. +.. ....++..+............+++...+ .-+.|||++|.+++.+|..
T Consensus 436 q~-l~~--~~~ivi~~~~~~~~~~r~~~r~lL~~~g--~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 436 SE-ITK--NRGIAICAPIAPYRQTRRDVRAMIEAVG--GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HH-HHH--TTCEEEECCCCCCHHHHHHHHHHHHTTS--EEEEEEECC----------
T ss_pred HH-HHh--cCCEEEEecCCccHHHHHHHHHHHHHcC--CEEEEEEcCCHHHHHHhcc
Confidence 11 111 1223344433222333344445554443 2379999999999999964
No 111
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.47 E-value=2.7e-06 Score=72.10 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=26.5
Q ss_pred CCCCcEEEEECCCCCChhHHH-HHHHhHhCc
Q 025970 28 SKPDKRLVLIGPPGSGKGTQS-PVIKDEYCL 57 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~-~~La~~~~~ 57 (245)
+.++++|+|.|+.||||||++ +.|++.++.
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 345789999999999999999 999998864
No 112
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.46 E-value=1.8e-06 Score=73.02 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.++++|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999998874
No 113
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.44 E-value=1.4e-07 Score=79.60 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=31.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDM 65 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~l 65 (245)
..+|.+|.|.|++||||||+++.|+..++ +.+++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 45688999999999999999999998875 455777654
No 114
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.42 E-value=2.1e-06 Score=73.57 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.++++|+|.|+.||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999999999874
No 115
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.38 E-value=5.1e-06 Score=63.49 Aligned_cols=115 Identities=19% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCC--ch-HHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKT--PL-GIKAKEAMDKGELVSDDLVVGIIDQAM 103 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~l~~~l 103 (245)
+..++.+++|+|++||||||+++.+. .+...++.+. ++..+.+.. .. ..... ..........+
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~-~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 70 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDF-CRGLMSDDENDQTVTGAAF-----------DVLHYIVSKRL 70 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHH-HHHHHCSSTTCGGGHHHHH-----------HHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHH-HHHHhcCcccchhhHHHHH-----------HHHHHHHHHHH
Confidence 44577899999999999999999865 3566677654 333332211 10 00000 01111111222
Q ss_pred cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
.. +...+++.........++...+.......| .+++||-|...+-.|...|.
T Consensus 71 ~~---g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 71 QL---GKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp HT---TCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred hC---CCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence 11 234566665444433333333333444566 58889999999999988774
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.37 E-value=6.1e-05 Score=59.94 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+++.+++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 5677999999999999999999998764
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.29 E-value=5.1e-07 Score=70.01 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC-----HHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS-----DDLVVGII 99 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~l 99 (245)
...++.+|+|+|++||||||+++.|+..++. .+++.+++.... ...... ..++ ...+...+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~-----------~~~~~~~~~~~~v~~~l 72 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRID-----------PWLPQSHQQNRMIMQIA 72 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCC-----------TTSSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hccccc-----------CCccchhhhhHHHHHHH
Confidence 4567889999999999999999999987644 477777664321 110000 0111 11111111
Q ss_pred HHHHcC-CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970 100 DQAMKK-PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW 159 (245)
Q Consensus 100 ~~~l~~-~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~ 159 (245)
...... ......++++++.... ....+. ..+.. ...+++.++.++++.|+..|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~----~~~~~-~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 73 ADVAGRYAKEGYFVILDGVVRPD-WLPAFT----ALARP-LHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHHHHHHHTSCEEEECSCCCTT-TTHHHH----TTCSC-EEEEEEECCHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCeEEEeccCcHH-HHHHHH----hcCCC-eEEEEecCCHHHHHHHHHhcC
Confidence 111000 0112346778764422 111111 11122 367899999999999999874
No 118
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.25 E-value=6e-06 Score=73.50 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=61.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCch-HHHHHHHHHcCCC--CCHHHHHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPL-GIKAKEAMDKGEL--VSDDLVVGIIDQ 101 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~-~~~i~~~l~~~~~--~~~~~~~~~l~~ 101 (245)
...+++|+|.|..||||+|+++.|.+.++ +.++.+..=-.. ....++ .+.....=..|.. .+..+...++..
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~--E~~~~yl~R~~~~lP~~G~IvIfdRSwYs~~~v~ 117 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDE--ELERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYA 117 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHH--HHTSCTTHHHHHHCCCTTCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh--hccCChhhhHHHhCCCCCeEEEEeCchhhHHHHH
Confidence 67899999999999999999999999985 333332100000 001111 1111111111211 011222333222
Q ss_pred HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970 102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP 162 (245)
Q Consensus 102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~ 162 (245)
++... +.. +.+..-..+...|+..+...| .+.+.++|++|+++..+|+..|..++
T Consensus 118 rv~g~-~~~----~~~~~~~~~i~~FE~~L~~~g-~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 118 RVEGH-IKE----AKLDQAIDAAERFERMLCDEG-ALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HHTTS-SCH----HHHHHHHHHHHHHHHHHHHTT-CEEEEEEEECCHHHHHHCC-------
T ss_pred HHhcC-CCH----HHHHHHHHHHHHHHHHHhcCC-CeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 22110 000 000001233344455565554 57899999999999999999987543
No 119
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.20 E-value=4.7e-07 Score=75.44 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLR 67 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~ 67 (245)
++++|.|+|++||||||+++.|++.+| +.++++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78999988764
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.18 E-value=2e-06 Score=67.82 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=39.9
Q ss_pred hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHH
Q 025970 15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGD 64 (245)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~ 64 (245)
++.+.++.++.....++.+|+|.|++||||||+++.|+..+. ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 577778877764456788999999999999999999998874 45566543
No 121
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.17 E-value=8.2e-07 Score=74.77 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=32.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
+++|+|+||+||||||+++.|++.++..++++|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 45899999999999999999999999999998765
No 122
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.15 E-value=1e-06 Score=74.46 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=33.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.++++|+|+||+||||||++..||++++..+||+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3456899999999999999999999999999998865
No 123
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.10 E-value=2e-05 Score=70.11 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM 103 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l 103 (245)
....+++|+|.|..||||+|+.+.|.+.++ +.++.+. .+..... +. ..+....
T Consensus 296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~--------~yl~R~~ 351 (500)
T 3czp_A 296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQ--------PYLWRFW 351 (500)
T ss_dssp GGGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TS--------CTTHHHH
T ss_pred hCCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cc--------hHHHHHH
Confidence 446899999999999999999999999884 4344331 0111100 00 1112344
Q ss_pred cCCCCC-CceEEcCCC------------CCH-------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970 104 KKPSCE-KGFILDGFP------------RTV-------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP 162 (245)
Q Consensus 104 ~~~~~~-~~~iidg~p------------~~~-------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~ 162 (245)
..++.. .-+|+|.+- .+. .+...|+..+...| .+.+.++|++|+++..+|+..|..++
T Consensus 352 ~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g-~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 352 RHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYG-IIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp TTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred HhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 444433 334555421 111 23333444455554 47799999999999999999987544
No 124
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.05 E-value=2.8e-06 Score=70.97 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
..|++|+|.||+||||||++..|++.++..+|++|..
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 4467899999999999999999999999999988653
No 125
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.02 E-value=2.9e-06 Score=71.87 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
.+|+|.||+||||||++..|++.++..+|++|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999999998875
No 126
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.99 E-value=3.5e-06 Score=70.51 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM 65 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l 65 (245)
+++|+|.||+||||||++..|++.++..+||+|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 56899999999999999999999999999988764
No 127
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.98 E-value=6.6e-06 Score=66.52 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=35.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA 71 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~ 71 (245)
++|.|+|++||||||+++.|++.+|+++++.++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5899999999999999999999999999998887766543
No 128
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.97 E-value=2.5e-06 Score=72.59 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=34.7
Q ss_pred hHHHHHHHHhccC--CCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970 15 DMMTELLRRFKCS--SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59 (245)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~ 59 (245)
.+.+.++..+... +...+.|+|+|+|||||||+++.|++.+++.+
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4555666666543 33345699999999999999999999999877
No 129
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.96 E-value=7.5e-06 Score=68.15 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=30.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDM 65 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~l 65 (245)
.++|..++|+||||+|||++++.+++.+|.+++ +...+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 456778889999999999999999999987655 44444
No 130
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.95 E-value=6.2e-05 Score=61.79 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK 105 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 105 (245)
..+.+|+|.|..||||+++.+.|.+.++ +.++.... .+. .+.....+...+..
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~--------Pt~----------------eE~~~~ylwR~~~~ 128 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA--------PTD----------------EEKSHDFLWRIEKQ 128 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS--------CCH----------------HHHTSCTTHHHHTT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC--------CCh----------------hhhcCCHHHHHHHh
Confidence 4789999999999999999999999985 33443310 000 00001111122333
Q ss_pred CCC-CCceEEcC-------------CCC------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970 106 PSC-EKGFILDG-------------FPR------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG 165 (245)
Q Consensus 106 ~~~-~~~~iidg-------------~p~------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~ 165 (245)
++. +.-.|+|+ +.. ...+...|+..+...|. ..+-++|++|.++..+|+..|..++..
T Consensus 129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~-~ilKf~LhIskeEQ~kR~~~R~~dP~k- 206 (289)
T 3rhf_A 129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGT-TIVKVMLNISKDEQKKRLIARLDDPSK- 206 (289)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTE-EEEEEEEECCHHHHHHHHHHHHHCGGG-
T ss_pred CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCC-EEEEEEEECCHHHHHHHHHHHhcCCcc-
Confidence 332 23344443 111 12344556666766654 346799999999999999998754321
Q ss_pred ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHH--HHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhH---HHHHH
Q 025970 166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSR--LEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKE---VTVEV 239 (245)
Q Consensus 166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~r--l~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~---v~~~i 239 (245)
+=..++..++.+ ...|......+...-+. ...|++|+++...-. +...|
T Consensus 207 -------------------------~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~l 261 (289)
T 3rhf_A 207 -------------------------HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLL 261 (289)
T ss_dssp -------------------------GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred -------------------------cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence 112233334333 35555555544444332 357999998876444 34444
Q ss_pred HHhh
Q 025970 240 QKVL 243 (245)
Q Consensus 240 ~~~l 243 (245)
.+.|
T Consensus 262 l~~L 265 (289)
T 3rhf_A 262 LDAL 265 (289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 131
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.92 E-value=6.3e-06 Score=73.64 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=31.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCc-------ceeehHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL-------CHLATGD 64 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~-------~~i~~~~ 64 (245)
..+++|+|+|.+||||||+++.|+++++. .+++.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 46789999999999999999999999986 5677654
No 132
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.87 E-value=7e-06 Score=70.98 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
++++|+|.||+||||||++..|++.++..+|++|.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 35689999999999999999999999999998865
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.86 E-value=1e-05 Score=62.20 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
|.++.+++|+||+||||||+++.|+..+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567999999999999999999998764
No 134
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.82 E-value=1.6e-05 Score=65.58 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=28.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
+.++..++++ ++|+|||||||||+++.|+..++...+.
T Consensus 37 ~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 37 KALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp HHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred HHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 3334444444 8999999999999999999998765443
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=5.1e-05 Score=58.12 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh----C--cceeehHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY----C--LCHLATGDMLRS 68 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~----~--~~~i~~~~li~~ 68 (245)
.++..++|+||+|+||||+++.++..+ | +.+++..+++..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 446789999999999999999998776 4 345666666543
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.79 E-value=2.4e-05 Score=65.01 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=36.5
Q ss_pred HHHHHHHHhcc----CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------ccee-ehHHH
Q 025970 16 MMTELLRRFKC----SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHL-ATGDM 65 (245)
Q Consensus 16 ~~~~~~~~~~~----~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i-~~~~l 65 (245)
.+..++.++.. .+.+|.+|+|.|++||||||+++.|+..++ ...+ +.|+.
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 44445444432 456788999999999999999999998875 3345 66654
No 137
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.74 E-value=2.1e-05 Score=61.52 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.1
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+.+.++..|+|.||+||||||+++.|.+.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3455778999999999999999999998875
No 138
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.73 E-value=4e-05 Score=65.98 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
...+++.++...+++..++|.||+||||||+++.|+..++..++.
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 345556666677788899999999999999999999988765554
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=2.2e-05 Score=68.74 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++|.-|+|+||||+|||++++++|..++.+++.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45677889999999999999999999999876654
No 140
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.73 E-value=2.4e-05 Score=65.60 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDM 65 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~l 65 (245)
..++.+|.|+|++||||||+++.|+..++ +.++++|..
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 36778999999999999999999998876 566666643
No 141
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=2.2e-05 Score=68.60 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=30.1
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++|.=|+|+||||+|||++++++|..++.+++.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 35566789999999999999999999999877654
No 142
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=2.6e-05 Score=68.34 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=30.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++|.=|+|+||||+|||++++++|..+|.+++.+
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345667889999999999999999999999877654
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.6e-05 Score=67.52 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++|.-++|+||||+|||++|+++|..++.+++.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34566789999999999999999999999887654
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.63 E-value=2.9e-05 Score=61.66 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++....++.+++|+||+||||||+++.|+..+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4455566778899999999999999999999876
No 145
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.61 E-value=6.7e-05 Score=64.15 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
++..++|.||||+|||++|+.+++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 456789999999999999999999998776644
No 146
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.61 E-value=4.2e-05 Score=62.08 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=27.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+.-++|+|+||+||||+++.++..++.+++..
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 345689999999999999999999998665543
No 147
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.61 E-value=5.1e-05 Score=61.41 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=24.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
-++|+|+||+||||+++.++..++...+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3899999999999999999998865444
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.60 E-value=4.8e-05 Score=61.61 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=28.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..+.-++|+|+||+|||++++.+++.++.+++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4456789999999999999999999998766543
No 149
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.59 E-value=4.2e-05 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
++++|+|++||||||+++.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 478999999999999999999888643
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=4.1e-05 Score=67.27 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=30.9
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
...+|.-|+|+||||+|||++++++|..++.+++.+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 345677889999999999999999999999877654
No 151
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=4.5e-05 Score=63.56 Aligned_cols=41 Identities=27% Similarity=0.487 Sum_probs=32.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRS 68 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~ 68 (245)
..++..++|+||||+|||++++.++..++..++ +..++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 355668899999999999999999999987655 44455544
No 152
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=5.3e-05 Score=65.96 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=30.9
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++|.=|+|+||||+|||++|+++|..++.+++.+
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 345667789999999999999999999999887654
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.55 E-value=6.1e-05 Score=62.34 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
++..++|+|+||+||||+++.++..++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 45688999999999999999999999876553
No 154
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.55 E-value=6.2e-05 Score=61.89 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++.-++|+|+||+|||++++.++..++..++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4556789999999999999999999998776543
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.54 E-value=4.2e-05 Score=59.78 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45688999999999999999998765
No 156
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.54 E-value=4.7e-05 Score=59.48 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
.+..|+|+|++||||||++..|+++.+ .+++.|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 456789999999999999999998866 7887764
No 157
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.52 E-value=5.2e-05 Score=66.53 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
++..|+|+||||+||||+++.|++.++.+++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 4567899999999999999999999998877553
No 158
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.52 E-value=8.8e-05 Score=55.94 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+..++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445666677888899999999999999999999766
No 159
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.52 E-value=0.00011 Score=64.96 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=32.6
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT 62 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~ 62 (245)
+++..+.....++.-++|+||||+|||++++.+++.++ .+++.+
T Consensus 51 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 33444444444556789999999999999999999998 655543
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=0.00015 Score=55.12 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 16 MMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+..+...+.. ..+..++|+|++|+|||++++.+++.+
T Consensus 30 ~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 30 EIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444444332 334567899999999999999999886
No 161
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.49 E-value=8.6e-05 Score=54.91 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+..+.+.+......+.-++|+|+||+|||++++.++...
T Consensus 10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 334444333323334457899999999999999999764
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=9.4e-05 Score=60.78 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=23.8
Q ss_pred EEEECCCCCChhHHHHHHHhHhCccee
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
++|+|+||+||||+++.++..++..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 899999999999999999998865444
No 163
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.48 E-value=8.5e-05 Score=62.48 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=28.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++.-++|+||||+|||++++.+++..+..++.+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3466789999999999999999999998765543
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.47 E-value=7.7e-05 Score=61.04 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=29.8
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++..++|+|+||+|||++++.+++..+.+++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45567889999999999999999999998776644
No 165
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.47 E-value=9.3e-05 Score=61.81 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+++.++...+++.+++|+|++||||||+++.|+..+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3567777888889999999999999999999999776
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.42 E-value=0.00016 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+..++|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 334567999999999999999999887
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.41 E-value=0.00016 Score=60.86 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++..++|+|+||+|||++++.+++.++.+++..
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34455689999999999999999999998766544
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.41 E-value=0.00012 Score=61.71 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=26.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh-Cccee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHL 60 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i 60 (245)
.++.-++|+||||+|||++++.++..+ +..++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 345688999999999999999999988 65544
No 169
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.39 E-value=9.9e-05 Score=63.35 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=28.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+..++|+|+||+|||++++.|++.++.+++.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 445689999999999999999999998766644
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.39 E-value=0.00033 Score=58.73 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDML 66 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li 66 (245)
.+..++|+|+||+||||+++.++..+ + +.+++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 45577899999999999999999877 4 4566666554
No 171
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.39 E-value=0.0001 Score=61.11 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
++..++|+|+||+|||++++.+++.++.+++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4557789999999999999999999986554
No 172
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.38 E-value=0.00012 Score=61.32 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++.+|+|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 5678899999999999999999999866
No 173
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.37 E-value=0.00019 Score=59.59 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++..++|+|+||+|||++++.+++.+
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999887
No 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.35 E-value=0.00013 Score=57.30 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
...++.+++|+||+||||||+++.|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345677999999999999999999997764
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.35 E-value=0.00013 Score=62.29 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=28.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++.-|+|+||||+|||++++.++..++..++.+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3455689999999999999999999998776543
No 176
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.35 E-value=0.00017 Score=56.67 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
...++|.||||+||||+|..|++.++-.++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 446899999999999999999988754444
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.34 E-value=0.00065 Score=52.71 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=28.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRS 68 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~ 68 (245)
..++|+|++|+||||+++.++..+ + +.+++...++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 678999999999999999999877 3 334666655443
No 178
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.33 E-value=0.00015 Score=61.34 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~ 59 (245)
++..++|+||||+||||+++.++..++..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 445789999999999999999999987543
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.32 E-value=0.00024 Score=60.65 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
.++..++|+|+||+|||++++.++..++..++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 356678999999999999999999999876553
No 180
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.30 E-value=0.0014 Score=54.51 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=20.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
..+..|+|+|| ||+|+.+.|.+.+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence 34456788998 79999999998764
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.30 E-value=0.00012 Score=54.63 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++|+|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56688999999999999999999876
No 182
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.30 E-value=5.9e-05 Score=61.46 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=26.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
+.-++|+|+||+|||++++.++..++.+++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 33478999999999999999999998766543
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.23 E-value=0.00037 Score=59.30 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
...+.....++..++|+||||+|||++++.+++.++.
T Consensus 60 ~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 60 LEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp HHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred HHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3333333334568899999999999999999999863
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.23 E-value=0.00038 Score=58.77 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+|.+++|.|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999766
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00018 Score=67.50 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=30.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..+|.-|+|+||||+|||++++.+|..+|.+++.+
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 35677899999999999999999999999876644
No 186
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.20 E-value=6.2e-05 Score=55.58 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.-++|+|+||+|||++++.++...+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3478999999999999999988766
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.19 E-value=0.00041 Score=58.07 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
....|..+++.|+||+|||++++.+++.++..++..
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 445556778888899999999999999998776654
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.19 E-value=0.00026 Score=61.03 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
++.-++|+|+||+|||++++.++..++..++.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 456789999999999999999999998876644
No 189
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.18 E-value=0.00041 Score=58.80 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=31.4
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+++.++....++.++.|+|+|||||||+.+.|...+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567777777888999999999999999999998654
No 190
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.17 E-value=0.00027 Score=56.01 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=27.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGD 64 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~ 64 (245)
++..++|+|+||+||||+++.+++.++ +.+++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456789999999999999999998764 34555543
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=0.00026 Score=63.47 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=28.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+..++|+||||+||||+++.+++.+|+.++..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 346889999999999999999999999877654
No 192
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.16 E-value=0.0003 Score=62.36 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=28.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.|.-++|+||||+|||++++.++...+.+++.+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 344589999999999999999999998776644
No 193
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.15 E-value=0.00028 Score=58.94 Aligned_cols=31 Identities=42% Similarity=0.613 Sum_probs=26.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
.+..++|+|++|+|||++++.+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4456789999999999999999999886654
No 194
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.15 E-value=0.00038 Score=56.80 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++ ..++-+++|+||+||||||+.+.|+..+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445555 4567799999999999999999998765
No 195
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00056 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++|+|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999875
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.13 E-value=0.0003 Score=61.90 Aligned_cols=40 Identities=25% Similarity=0.547 Sum_probs=28.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh-Ccce--eehHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCH--LATGDMLRS 68 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~--i~~~~li~~ 68 (245)
.++.-++|+||||+|||++++.++..+ +..+ ++..+++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 345678999999999999999999998 6554 454455443
No 197
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.11 E-value=0.00034 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+++.|.|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4588999999999999999998875
No 198
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.00048 Score=54.26 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
...+..++|+|++|+||||+++.+++.++
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33445789999999999999999998874
No 199
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.09 E-value=0.00064 Score=56.78 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 457799999999999999999999776
No 200
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.00028 Score=56.48 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
+++-+++|+||+||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 567799999999999999999887
No 201
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.06 E-value=0.00059 Score=58.25 Aligned_cols=28 Identities=25% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...+..++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3445588999999999999999999876
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.06 E-value=0.001 Score=58.45 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=28.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh-----Cc--ceeehHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY-----CL--CHLATGDML 66 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~-----~~--~~i~~~~li 66 (245)
+..++|+|+||+||||+++.++..+ +. .+++...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5577899999999999999999876 43 455665543
No 203
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.05 E-value=0.00023 Score=57.23 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.8
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+||+||||||+.+.|+-.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445566788899999999999999999998544
No 204
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.0005 Score=58.53 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...+..++|+|+||+||||+++.+++.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456688999999999999999999887
No 205
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.03 E-value=0.00029 Score=54.18 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
+|+|+|++||||||+|..|+.. +.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence 3789999999999999999977 654
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.02 E-value=0.00078 Score=55.83 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...++|+|+||+||||+++.+++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3478999999999999999999987
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.02 E-value=0.00041 Score=56.36 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+..++|+|+||+|||++++.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34578999999999999999998764
No 208
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.01 E-value=0.0005 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+++|.|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999766
No 209
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00047 Score=57.91 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+|..++|+||||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3566788999999999999999999888
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.01 E-value=0.00051 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.+++|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57799999999999999999999766
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.01 E-value=0.00068 Score=60.35 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=29.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++.-++|+|+||+|||++++.++..++.+++..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34556789999999999999999999998765543
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.00 E-value=0.00033 Score=55.37 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.-+++-+++|.|++||||||+++.|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999864
No 213
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.00 E-value=0.00089 Score=57.08 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=28.4
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++........++++|+|+|+||+||||++..|+..+
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344443344567899999999999999999998775
No 214
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.00044 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999876
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.00079 Score=57.19 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...+..++|+|++|+||||+++.+++.+
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4556688999999999999999999877
No 216
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.97 E-value=0.00064 Score=53.63 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.-+++.+++|.|++||||||+++.++..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567799999999999999999998543
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.00054 Score=61.84 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
++..++|+||||+||||+++.++..++..++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5778999999999999999999999876544
No 218
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.97 E-value=0.00047 Score=61.48 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=26.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
|.-++|+||||+||||+++.++...+.+++.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4448999999999999999999988765543
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.95 E-value=0.00053 Score=53.74 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=27.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT 62 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~ 62 (245)
.-+++.+++|.|++||||||++..|+...+ ..+++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 345677999999999999999999986333 334444
No 220
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.94 E-value=0.00056 Score=56.58 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.+...-.++-+++|.|+|||||||+++.++..+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444456778899999999999999999988654
No 221
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.94 E-value=0.00057 Score=52.27 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++++|.|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4588999999999999999998764
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.92 E-value=0.00036 Score=61.88 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++.+|+|+|++||||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4568899999999999999999998765
No 223
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.92 E-value=0.00025 Score=56.52 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444556678899999999999999999998544
No 224
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.92 E-value=0.0007 Score=59.61 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=27.0
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++|+|+||+||||+++.+++.++..++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4688999999999999999999998766544
No 225
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.91 E-value=0.00048 Score=55.36 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445566788899999999999999999998544
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.88 E-value=0.00075 Score=57.64 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+|+|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467899999999999999999999766
No 227
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.87 E-value=0.00032 Score=57.73 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++-+++|+||.||||||+.+.|+-.+
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34455566788899999999999999999998544
No 228
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.86 E-value=0.00055 Score=55.91 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445566788899999999999999999998554
No 229
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.85 E-value=0.00071 Score=52.17 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+++++|++||||||++-.++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999987666554
No 230
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.85 E-value=0.0014 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++|+|++|+||||+++.++..+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999887
No 231
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.85 E-value=0.0011 Score=56.17 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=29.8
Q ss_pred HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.++.....++.+|+|+|++|+||||+++.|+..+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445555566778899999999999999999998654
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.84 E-value=0.00058 Score=55.07 Aligned_cols=35 Identities=29% Similarity=0.596 Sum_probs=29.0
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44455666788899999999999999999998654
No 233
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.83 E-value=0.00036 Score=57.11 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|+|++||||||+.+.|+-.+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3344555778899999999999999999998544
No 234
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.83 E-value=0.00033 Score=59.98 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+.++....++.+++|.|++||||||+.+.|...+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 55555566777999999999999999999997763
No 235
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.83 E-value=0.00037 Score=56.42 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=28.0
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|+|++||||||+.+.|+-.+
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4445566778899999999999999999998654
No 236
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.82 E-value=0.00062 Score=55.64 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3444556788899999999999999999998654
No 237
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.0011 Score=56.02 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+. ++|+||+|+||||+++.|+..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3344 8999999999999999999854
No 238
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.82 E-value=0.00045 Score=56.22 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=27.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444566788899999999999999999998554
No 239
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.82 E-value=0.00055 Score=56.05 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=27.3
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334455677889999999999999999999864
No 240
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.81 E-value=0.00041 Score=56.47 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=27.8
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445556778899999999999999999998554
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.81 E-value=0.00065 Score=55.76 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=28.7
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455566788899999999999999999998654
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.81 E-value=0.0012 Score=55.12 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhC----c--ceeehHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYC----L--CHLATGDMLRS 68 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~----~--~~i~~~~li~~ 68 (245)
+..++|+|+||+|||+++..++..+. . .++++.+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 56789999999999999999987553 3 34666665543
No 243
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.80 E-value=0.001 Score=50.94 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=25.0
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
|...+...|+|+|.+|+||||+.++|...
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44566789999999999999999999865
No 244
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.80 E-value=0.00057 Score=64.20 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=29.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.+|.-++|+||||+|||.+++++|...+.++++.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 4566789999999999999999999999887754
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.00064 Score=64.21 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=29.7
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
..++..++|+|+|||||||+++.|+..++..++..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 45677899999999999999999999988765543
No 246
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.79 E-value=0.00079 Score=54.24 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.+ -+++|.|+.||||||+.+.|+-.+
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344455566 799999999999999999998544
No 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.79 E-value=0.00068 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=28.6
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++.+++|+|+.||||||+.+.|+-.+
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34455566788899999999999999999998654
No 248
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0014 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=21.2
Q ss_pred EEEECCCCCChhHHHHHHHhHhC
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
++|+|+||+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 249
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.79 E-value=0.00077 Score=50.77 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..+...|+|+|.+||||||+.++|..
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999875
No 250
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.78 E-value=0.00069 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.++-+++|.|+.||||||+.+.|+-.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35668999999999999999999853
No 251
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0011 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+.+.|+|+|++||||||+.+.|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999999999854
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00059 Score=54.94 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.6
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555678899999999999999999998654
No 253
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.77 E-value=0.00083 Score=54.41 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=27.2
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455667889999999999999999999864
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.77 E-value=0.00061 Score=53.93 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444555677899999999999999999998544
No 255
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.77 E-value=0.00096 Score=59.05 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...++|+|+||+|||++++.|+..+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999986
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.76 E-value=0.0015 Score=57.18 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|.+|+|+|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998766
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.001 Score=52.98 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=23.4
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...++.+++++|+||+||||.+-.++..+
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 33567899999999999999998888777
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.76 E-value=0.00074 Score=53.78 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
-+++.+++|.|++||||||++..|+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356779999999999999999999873
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.76 E-value=0.00061 Score=54.45 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++.+++|.|+.||||||+.+.|+-.+
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555678899999999999999999998654
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.75 E-value=0.00057 Score=57.38 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.7
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
-++|+|+||+|||++++.++..++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 5789999999999999999999876544
No 261
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.74 E-value=0.001 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.-+|+++|+|+||||||+++..+..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHH
Confidence 3467999999999999999887643
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.001 Score=55.27 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357799999999999999999998655
No 263
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.72 E-value=0.002 Score=54.17 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+|+|+|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467799999999999999999998766
No 264
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.71 E-value=0.0005 Score=56.71 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444555778899999999999999999998654
No 265
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.71 E-value=0.00084 Score=50.62 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.7
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
|...+...|+|.|.+|+||||+.++|...
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44566789999999999999999999753
No 266
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.00042 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+++|+|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998776
No 267
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.71 E-value=0.00085 Score=54.88 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455566788899999999999999999998554
No 268
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.00066 Score=57.93 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.3
Q ss_pred HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+..++-+++|+||+||||||+.+.|+--.
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344556778899999999999999999998543
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.69 E-value=0.00084 Score=54.38 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.6
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444556778899999999999999999998544
No 270
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.69 E-value=0.002 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=20.7
Q ss_pred EEEECCCCCChhHHHHHHHhHh
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++|+||||+||||+++.++..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 271
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.68 E-value=0.00094 Score=50.88 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=27.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
+.-++|.|++|+||||++..|.+ .|+.+++.|.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~ 48 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID-RGHQLVCDDV 48 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCE
Confidence 45689999999999999999987 4888777653
No 272
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.68 E-value=0.0014 Score=49.83 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=26.2
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.....+.....|+|.|.+|+||||+.++|...
T Consensus 7 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp HHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred HHHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 334444567789999999999999999998753
No 273
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.67 E-value=0.00079 Score=57.89 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.8
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|+||+||||||+.+.|+--+
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3444566778899999999999999999998544
No 274
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.67 E-value=0.0013 Score=49.70 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=22.5
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
|+..+...|+|.|.+|+||||+.++|...
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 44566789999999999999999998753
No 275
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.00088 Score=50.39 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...+...|+|.|.+|+||||+.++|..
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 445567999999999999999999863
No 276
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.66 E-value=0.00083 Score=57.36 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=27.8
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3445566778899999999999999999998544
No 277
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.66 E-value=0.0021 Score=54.53 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
...+..++|+|++|+||||+++.+++.++.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344557899999999999999999998854
No 278
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.64 E-value=0.0013 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.++..|+|.|++|+||||+.++|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999853
No 279
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.64 E-value=0.00094 Score=54.20 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=27.6
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444556778899999999999999999998654
No 280
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.64 E-value=0.0012 Score=49.63 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.+...|+|.|.+|+||||+.++|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999854
No 281
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.63 E-value=0.00095 Score=57.04 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=25.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
...++|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999877543
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.00088 Score=57.27 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=27.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3445566778899999999999999999998544
No 283
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.62 E-value=0.0013 Score=56.48 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++-+++|+|++||||||+.+.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3566789999999999999999998765
No 284
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.62 E-value=0.0013 Score=57.44 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=27.6
Q ss_pred HHHhccCCCCCcE--EEEECCCCCChhHHHHHHHhH
Q 025970 21 LRRFKCSSKPDKR--LVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 21 ~~~~~~~~~~~~~--i~i~G~~GsGKSt~~~~La~~ 54 (245)
+..++.+.+++.+ ++|+|++||||||+.+.|+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4556667777777 999999999999999999853
No 285
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0021 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++|+|+||+||||+++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999999886
No 286
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.60 E-value=0.0014 Score=55.75 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
....+|+|+|+|||||||+.+.|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347799999999999999999998654
No 287
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.60 E-value=0.0012 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...|+|.|++|+||||+.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999974
No 288
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.60 E-value=0.0025 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.736 Sum_probs=20.8
Q ss_pred EEEECCCCCChhHHHHHHHhHh
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++|+|+||+|||++++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 289
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.60 E-value=0.00096 Score=57.03 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=27.8
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+-.++-+++|+|++||||||+.+.|+--+
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3444566788899999999999999999998544
No 290
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.60 E-value=0.00096 Score=57.25 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=27.7
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3444556778899999999999999999998544
No 291
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.59 E-value=0.00081 Score=57.32 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+..++-+++|.||+||||||+.+.|+-.+
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455566778899999999999999999998543
No 292
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.58 E-value=0.0018 Score=52.83 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL 57 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~ 57 (245)
++...++|.||||+|||+++..|+..++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33446899999999999999999987544
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.57 E-value=0.0013 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
....|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 467899999999999999999975
No 294
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.55 E-value=0.0005 Score=58.08 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++....++.+++|.|++||||||+.+.|+..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455555555566789999999999999999998766
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.54 E-value=0.0015 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|.+|+|.|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999765
No 296
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.54 E-value=0.0015 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+..|+|.|.+|+||||+.++|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 297
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.53 E-value=0.0014 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
++..|+|+|.+|+||||+.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.53 E-value=0.0018 Score=55.30 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
-+++|+||+||||||+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 389999999999999999988665
No 299
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.52 E-value=0.0028 Score=59.44 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh----------CcceeehH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY----------CLCHLATG 63 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~----------~~~~i~~~ 63 (245)
.+..++|+|+||+|||++++.|++.+ +..++..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 33457899999999999999999997 66666553
No 300
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.52 E-value=0.0013 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|+|+|++||||||+.++|+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999854
No 301
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.52 E-value=0.002 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.++..|+|.|.+|+||||+.++|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975
No 302
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.52 E-value=0.0035 Score=52.79 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC 58 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~ 58 (245)
+..+...+. ....+..++|+|++|+|||++++.|++.+...
T Consensus 11 ~~~l~~~i~-~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 11 FEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHHHH-TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHH-cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 334444333 44556688999999999999999999988643
No 303
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0017 Score=49.84 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+.+...|+|+|.+|+||||+.++|...
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999999853
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.51 E-value=0.0015 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|+|+|++||||||+.++|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999854
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.51 E-value=0.0006 Score=56.98 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=28.4
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++...+++.+++|+|++||||||+.+.|+..+
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34444556778899999999999999999998655
No 306
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.51 E-value=0.0018 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|.|.+|+||||+.++|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999753
No 307
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.51 E-value=0.0014 Score=52.22 Aligned_cols=35 Identities=23% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh-----Ccceeeh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLAT 62 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~ 62 (245)
-+++.+++|.|+|||||||++..++... +..+++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3567799999999999999988876543 3445554
No 308
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.0017 Score=50.87 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+.|+|+|.+||||||++.+|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998775
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.51 E-value=0.0017 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.|+|.|.+|+||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999854
No 310
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.51 E-value=0.00099 Score=57.18 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=27.0
Q ss_pred HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344555677899999999999999999998543
No 311
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.50 E-value=0.0014 Score=49.67 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
..+...|+|.|.+|+||||+.++|...
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 345678999999999999999998743
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.50 E-value=0.0013 Score=54.59 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.4
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..-.++.+++|+|+.||||||+.+.|+-.+
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344677899999999999999999998654
No 313
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.49 E-value=0.00075 Score=57.40 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=28.4
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus 16 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34455566778899999999999999999998544
No 314
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0033 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.8
Q ss_pred EEEECCCCCChhHHHHHHHhHh
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++|+|++|+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 315
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.49 E-value=0.0016 Score=50.34 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
..+...|+|+|.+|+||||+.++|...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 445678999999999999999999754
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.49 E-value=0.0034 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+|++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999766
No 317
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0018 Score=57.08 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=27.1
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++....++.+++|+|+.||||||+++.|+..+
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34466788899999999999999999998754
No 318
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.46 E-value=0.0024 Score=53.48 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=28.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
..++|+|++|+||||+++.+++..+..+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 588999999999999999999988877777643
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.46 E-value=0.0016 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|++.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998753
No 320
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.46 E-value=0.0012 Score=49.94 Aligned_cols=25 Identities=12% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.+|+||||+.++|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999974
No 321
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.46 E-value=0.0012 Score=57.01 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=27.7
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
++.++.+..++-+++|.||+||||||+.+.|+-.
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3444456678889999999999999999999853
No 322
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.46 E-value=0.002 Score=60.36 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=25.1
Q ss_pred EEEEECCCCCChhHHHHHHHhHhCccee
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYCLCHL 60 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i 60 (245)
.++|+|+||+|||++++.|++.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6899999999999999999999986544
No 323
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.45 E-value=0.0015 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998654
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.44 E-value=0.0015 Score=53.27 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=25.8
Q ss_pred HhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.++.+-. +-+++|.|+.||||||+.+.|+-.
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 3445556 889999999999999999999854
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.44 E-value=0.0023 Score=47.56 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.+|+||||+.++|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999964
No 326
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.44 E-value=0.0014 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.+++|.|++||||||++..++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46678999999999999999998853
No 327
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.44 E-value=0.0011 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.7
Q ss_pred EEEECCCCCChhHHHHHHHhHhC
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
++|+|+||+|||++++.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999876
No 328
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.43 E-value=0.002 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.++|+|+|.+||||||++.+|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998774
No 329
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.43 E-value=0.04 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
..+..|+|+|| ||+|+.++|.+.+.
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~ 553 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFP 553 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCc
Confidence 34557789998 49999999998774
No 330
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.43 E-value=0.0018 Score=47.85 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+...|+|.|.+|+||||+.++|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999753
No 331
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.43 E-value=0.0028 Score=49.11 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=24.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++.+++++|++||||||.+-.++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999998888877
No 332
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.0019 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+...|+|.|.+|+||||+.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 456899999999999999999874
No 333
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.43 E-value=0.0011 Score=51.57 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...++..|+|+|++||||||+.+.|..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 456778999999999999999998863
No 334
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.42 E-value=0.0018 Score=49.47 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...+...|+|+|.+|+||||+.++|...
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 4455679999999999999999998753
No 335
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.42 E-value=0.00097 Score=59.68 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..+......+..++|+|++||||||+.+.|...+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334444444556679999999999999999998765
No 336
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.42 E-value=0.0022 Score=48.50 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
..+...|+|+|.+|+||||+.++|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999998843
No 337
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.0008 Score=63.56 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=28.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~ 62 (245)
.++..++|+||||+||||+++.++..++..++..
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3566789999999999999999999987665543
No 338
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.41 E-value=0.0016 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.2
Q ss_pred cEEEEECCCCCChhHHHHHHHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..|+|.|++|+||||+.++|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999975
No 339
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.40 E-value=0.0027 Score=52.90 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+..++|+|+||+|||++++.++...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 344567899999999999999999854
No 340
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.39 E-value=0.0023 Score=48.91 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|+|.+|+||||+.+.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999974
No 341
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=50.01 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...+...|+|+|.+|+||||+.++|...
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3356789999999999999999999853
No 342
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.38 E-value=0.0024 Score=55.59 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.++-+++|+||+||||||+.+.|...++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4556899999999999999999988763
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.38 E-value=0.002 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...|+|.|.+|+||||+.++|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 344
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.38 E-value=0.0018 Score=49.16 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.+...|+|+|.+|+||||+.++|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 455678999999999999999999853
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.37 E-value=0.0025 Score=49.74 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+.|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998653
No 346
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.35 E-value=0.0022 Score=54.87 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 14 VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+..+..++.-....++...|+|.|.+||||||+++.+.=.+
T Consensus 16 s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 16 SKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp ---------------CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 334444444434455778899999999999999999986444
No 347
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.34 E-value=0.0019 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|+|.|.+|+||||+.++|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998743
No 348
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.34 E-value=0.00081 Score=57.31 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.9
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445566778899999999999999999998543
No 349
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.33 E-value=0.0018 Score=55.13 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.-+++.++.|+|++||||||++..|+...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677899999999999999999999776
No 350
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.33 E-value=0.002 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+...|+|.|.+|+||||+.++|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999743
No 351
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.33 E-value=0.0022 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4467899999999999999999975
No 352
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.33 E-value=0.0021 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+...|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999998753
No 353
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.32 E-value=0.002 Score=50.16 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=22.5
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.......|+|+|.+|+||||+.++|...
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456779999999999999999999853
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.31 E-value=0.0022 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.8
Q ss_pred CcEEEEECCCCCChhHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La 52 (245)
...|+|.|.+|+||||+.++|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3579999999999999999885
No 355
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.31 E-value=0.0017 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
+.++..|+|.|.+|+||||+.++|.
T Consensus 15 ~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 15 SNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999886
No 356
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.30 E-value=0.0018 Score=48.55 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+.+...|+|+|.+|+||||+.++|..
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Confidence 33457899999999999999999874
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.30 E-value=0.0044 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999665
No 358
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0024 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 359
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.28 E-value=0.0029 Score=48.12 Aligned_cols=26 Identities=12% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...+.|+|.|.+|+||||+.++|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34568999999999999999998754
No 360
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.27 E-value=0.0017 Score=59.01 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=30.8
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.+-+++.+++|.|++||||||+.+.|+..+
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556666677888899999999999999999998665
No 361
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.0021 Score=53.88 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT 62 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~ 62 (245)
++..++|.|+||+||||++..++...| ..++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 445679999999999999999987533 346665
No 362
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.27 E-value=0.0023 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4567999999999999999999874
No 363
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.27 E-value=0.0017 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+...|+|.|.+|+||||+.++|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999975
No 364
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.25 E-value=0.0032 Score=47.98 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..+...|+|+|.+|+||||+.++|..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34567999999999999999988874
No 365
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.24 E-value=0.0034 Score=50.60 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+..++++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999998654
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.24 E-value=0.0025 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46799999999999999999974
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.24 E-value=0.0023 Score=47.52 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+...|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999754
No 368
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.24 E-value=0.0021 Score=49.65 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=22.8
Q ss_pred hccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...+......|+|+|.+|+||||+.++|..
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 333445678999999999999999999864
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.23 E-value=0.0024 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
++..|+|+|.+|+||||+.+.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999853
No 370
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.23 E-value=0.0024 Score=55.90 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+|.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 371
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.22 E-value=0.0031 Score=48.58 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
..+...|+|+|.+|+||||+.++|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 355789999999999999999999753
No 372
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.21 E-value=0.0041 Score=54.55 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=31.3
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+++.+ ..-.++-++.|+|++||||||+.+.|+....
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56667 6778888999999999999999999998763
No 373
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.21 E-value=0.0029 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred cEEEEECCCCCChhHHHHHHHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..|+|.|.+|+||||+.++|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999863
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.21 E-value=0.0024 Score=47.90 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+...|+|.|.+|+||||+.++|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999974
No 375
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.21 E-value=0.0028 Score=47.83 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 35678999999999999999999853
No 376
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0019 Score=49.19 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.9
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.+...|+|+|.+|+||||+.++|...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcC
Confidence 345679999999999999999999753
No 377
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.18 E-value=0.0026 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.|.|+|||||||++..++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467799999999999999999988764
No 378
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0035 Score=47.94 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4567899999999999999999975
No 379
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.18 E-value=0.0033 Score=48.82 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=24.3
Q ss_pred cCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 26 CSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
|...+...|+|.|.+|+||||+.++|..
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhc
Confidence 4556678999999999999999999874
No 380
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.17 E-value=0.0033 Score=48.40 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+||||||+.+.|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999998743
No 381
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.17 E-value=0.0028 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.+|+||||+.++|..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 4467899999999999999999874
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.16 E-value=0.0038 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHhC
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+.+|+|+.||||||+.++|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999976553
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.16 E-value=0.0033 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.+|+||||+.++|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999874
No 384
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.16 E-value=0.0031 Score=48.94 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.4
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..+...|+|.|.+|+||||+.++|..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 35678999999999999999999874
No 385
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.15 E-value=0.0029 Score=50.45 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.+.|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 45679999999999999999999753
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.15 E-value=0.0031 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|.|.+|+||||+.++|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34678999999999999999999753
No 387
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.15 E-value=0.0027 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+.+..+|+|+|.||+||||+.++|..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHC
Confidence 44556899999999999999999984
No 388
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.15 E-value=0.0028 Score=49.05 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|+|.+|+||||+.++|..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999975
No 389
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.003 Score=47.47 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|.|.+|+||||+.++|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999998753
No 390
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.14 E-value=0.0031 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=20.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.+|+||||+.++|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3455899999999999999999985
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.13 E-value=0.0031 Score=48.13 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
++...|+|+|.+|+||||+.++|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4467899999999999999999974
No 392
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.13 E-value=0.0033 Score=53.56 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
++.+++|+|++||||||+.+.|...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 3558999999999999999999843
No 393
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.12 E-value=0.0021 Score=58.74 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.+..++|+|+||+||||+++.++..++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345789999999999999999998774
No 394
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.11 E-value=0.0034 Score=47.91 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|.|.+|+||||+.++|..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3467899999999999999999975
No 395
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.09 E-value=0.0074 Score=52.79 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHhccC-------CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 16 MMTELLRRFKCS-------SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 16 ~~~~~~~~~~~~-------~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+++.+.+... ..+|.+|+|.|++|+||||++..|+..+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555555421 1356789999999999999999998655
No 396
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.09 E-value=0.0017 Score=56.39 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+.+++|+|++||||||+.+.|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 344899999999999999999986
No 397
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.08 E-value=0.0036 Score=47.75 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.++|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 45678999999999999999998753
No 398
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0033 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+.|+|.|++||||||+.++|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999754
No 399
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.0042 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.+|+|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998766
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.07 E-value=0.0036 Score=47.21 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+...|+|.|.+|+||||+.++|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999874
No 401
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0038 Score=47.46 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.+|+||||+.++|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5577999999999999999999984
No 402
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.07 E-value=0.0033 Score=48.08 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+.....|+|+|.+|+||||+.++|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34577999999999999999999864
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.07 E-value=0.0035 Score=53.22 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970 20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
+++.+ ..-.++-++.|+|++||||||+.+.|+....
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666 6677888999999999999999999998764
No 404
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.06 E-value=0.0016 Score=58.11 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC 56 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~ 56 (245)
.-++|+|+||+|||++++.|+...+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3678999999999999999998774
No 405
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.06 E-value=0.0057 Score=49.59 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.++.+.+.....+...|+|.|.+|+||||+...|...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444555544456789999999999999999999853
No 406
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.04 E-value=0.0046 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999999874
No 407
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.04 E-value=0.0045 Score=58.02 Aligned_cols=33 Identities=15% Similarity=0.462 Sum_probs=26.6
Q ss_pred EEEEECCCCCChhHHHHHHHhHh---C--cceeehHHH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDM 65 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~l 65 (245)
.++|+||||+|||++++.|++.+ + +..+++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 68999999999999999999986 2 445555444
No 408
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.03 E-value=0.004 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 5678999999999999999999863
No 409
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.03 E-value=0.0041 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.+++|.|++||||||+.+.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45688999999999999999998 54
No 410
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.03 E-value=0.004 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999999999874
No 411
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.02 E-value=0.0047 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHhH
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.|+|.|.+|+||||+.++|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 412
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0037 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+++.+++|.|+||+|||++|..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999987653
No 413
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.0036 Score=56.34 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.++-+++|+|+.||||||+.+.|+-.+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55678899999999999999999998644
No 414
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.00 E-value=0.004 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 415
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.00 E-value=0.0031 Score=48.02 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+...|+|.|.+|+||||+.+.|...+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 346789999999999999998887654
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.98 E-value=0.0044 Score=48.16 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 417
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.98 E-value=0.0033 Score=54.43 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
.++.++.|.|+|||||||++..|+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 467799999999999999999776
No 418
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.98 E-value=0.0023 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=11.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|+|.+|+||||+.++|..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp SEEEEEEEECCCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999998874
No 419
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.98 E-value=0.0034 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|.|.||+||||+.++|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999975
No 420
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.97 E-value=0.0038 Score=56.00 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=26.8
Q ss_pred HHHHhcc-CCCCCcEEEEECCCCCChhHHHHHH
Q 025970 20 LLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVI 51 (245)
Q Consensus 20 ~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~L 51 (245)
.++.++. .-+++-+++|.|++||||||+++.+
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4556666 6678889999999999999999994
No 421
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.97 E-value=0.0031 Score=59.91 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++|+|+||+||||+++.|+..+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999987
No 422
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.97 E-value=0.0042 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.610 Sum_probs=22.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+||||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999753
No 423
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.96 E-value=0.0038 Score=47.72 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
..+...|+|.|.+|+||||+.++|...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345679999999999999999998754
No 424
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.96 E-value=0.0046 Score=47.50 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...+...|+|+|.+|+||||+.++|..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 345678999999999999999999874
No 425
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.96 E-value=0.0048 Score=52.27 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.|.|+|||||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56779999999999999999999875
No 426
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.96 E-value=0.0067 Score=49.35 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+++............|+|+|.+|+||||+.+.|...
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444434456789999999999999999999753
No 427
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.96 E-value=0.0039 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.8
Q ss_pred cEEEEECCCCCChhHHHHHHHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..|+|+|.+|+||||+.++|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999975
No 428
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.95 E-value=0.0052 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...+.|+|+|.+||||||+.++|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45568999999999999999999743
No 429
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.95 E-value=0.0037 Score=47.32 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.++|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999853
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.94 E-value=0.0032 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.255 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
-++++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 458899999999999999999854
No 431
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.93 E-value=0.004 Score=48.04 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=24.2
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+...++. .++..|+|.|.+|+||||+.++|..
T Consensus 16 l~~~~~~-~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCT-TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhcc-CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4444443 3455789999999999999999863
No 432
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.93 E-value=0.0041 Score=52.87 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=27.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATG 63 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~ 63 (245)
+++.++.|.|+|||||||++..++... ...++++.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456789999999999999999988654 34566653
No 433
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.91 E-value=0.0039 Score=51.93 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.++++-+|+|+|.||+||||+.++|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4566679999999999999999999753
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0043 Score=48.16 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.....|+|+|.+|+||||+.++|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999998753
No 435
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.87 E-value=0.0048 Score=49.68 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.++..|+|+|.+|+||||+.+.|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999998743
No 436
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.004 Score=47.63 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.++|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999753
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0057 Score=55.85 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.1
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.+.++-+++|+|+.||||||+.+.|+-.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44678899999999999999999998644
No 438
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0038 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|.|.+|+||||+.++|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 439
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.83 E-value=0.0018 Score=59.12 Aligned_cols=35 Identities=34% Similarity=0.630 Sum_probs=29.1
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++..-+++.+++|.|++||||||+.+.|+..+
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44455566788899999999999999999998665
No 440
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.83 E-value=0.0052 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
....|+|+|.+|+||||+.++|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999998753
No 441
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0055 Score=46.75 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
....|+|+|.+|+||||+.++|....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 442
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0057 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|+|.+|+||||+...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999874
No 443
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.81 E-value=0.0051 Score=58.45 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhHh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++|+|+||+|||++++.|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.81 E-value=0.0055 Score=55.13 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=25.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...++-+++|+|+.||||||+.+.|+-.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999998544
No 445
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.81 E-value=0.0067 Score=44.90 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.5
Q ss_pred CcEEEEECCCCCChhHHHHHHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La 52 (245)
+.+.+|+|+.||||||+..++.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998886
No 446
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.80 E-value=0.0054 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+.+++|.|++||||||+.+.|+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 356889999999999999999973
No 447
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.80 E-value=0.0078 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCcEEEE--ECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVL--IGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i--~G~~GsGKSt~~~~La~~~ 55 (245)
.+..++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4557777 9999999999999998775
No 448
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.79 E-value=0.0088 Score=47.10 Aligned_cols=28 Identities=18% Similarity=-0.012 Sum_probs=24.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..++.+.+++|++||||||.+-.++..+
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3567899999999999999998888777
No 449
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.0041 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.++|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 450
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.76 E-value=0.0044 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La 52 (245)
....|+|+|.+|+||||+.++|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 451
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.76 E-value=0.0048 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+++.++.|.|+|||||||++..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 456799999999999999999998753
No 452
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.74 E-value=0.0046 Score=47.48 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.+...|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 345779999999999999999987653
No 453
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.74 E-value=0.013 Score=49.06 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=25.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT 62 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~ 62 (245)
..++|+|++|+||||+++.+++..+ ..+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 4889999999999999999998764 345554
No 454
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.73 E-value=0.0062 Score=51.91 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=27.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh-----Ccceeeh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLAT 62 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~ 62 (245)
+++.++.|.|+||+||||+|..|+... .+.++++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 356789999999999999999988654 3456666
No 455
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0057 Score=48.04 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.......|+|+|.+|+||||+.++|...
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3445678999999999999999999753
No 456
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.71 E-value=0.0055 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...|+|+|.+|+||||+.++|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999864
No 457
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.69 E-value=0.0066 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
....|+|+|.+|+||||+.++|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999753
No 458
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.68 E-value=0.0073 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.+|+|.|+.||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999776
No 459
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.68 E-value=0.0045 Score=47.05 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIK 52 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La 52 (245)
.+...|+|.|.+|+||||+.++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999885
No 460
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.66 E-value=0.0051 Score=55.87 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=28.4
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-+++.+++|.|++||||||+.+.|+..+
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34444555778899999999999999999998665
No 461
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.64 E-value=0.0079 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++..++|+|+||+|||++++.|+..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45567899999999999999999876
No 462
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.63 E-value=0.0093 Score=49.81 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++-+++|.|+||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567799999999999999999988654
No 463
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.62 E-value=0.0063 Score=53.91 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=24.7
Q ss_pred ccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.+..+ -+++|+|++||||||+.+.|+-.+
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 344455 789999999999999999998655
No 464
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.62 E-value=0.0075 Score=46.28 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|+|.|.+|+||||+.++|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999854
No 465
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.051 Score=45.17 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=44.8
Q ss_pred EEEECCCCCChhHHHHHHHhHhCcc-eeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970 34 LVLIGPPGSGKGTQSPVIKDEYCLC-HLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF 112 (245)
Q Consensus 34 i~i~G~~GsGKSt~~~~La~~~~~~-~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 112 (245)
|||+|| ||+|+.++|.+.+.-. .++.. + .+. +.++..++-..+...+. .++.+
T Consensus 148 vVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~----------~r~----i~~~~fis~~~V~~vl~-------~Gk~~ 201 (308)
T 3kfv_A 148 VVILGP---VADIAMQKLTAEMPDQFEIAET--V----------SRT----DSPSKIIKLDTVRVIAE-------KDKHA 201 (308)
T ss_dssp EEEEST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHHHHHH-------TTCEE
T ss_pred EEEeCc---cHHHHHHHHHHhCccccccccc--c----------ccc----ccCCCeecHHHHHHHHH-------CCCcE
Confidence 578899 7999999999887432 22211 0 000 34566665555544432 25578
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC-HHHHHHH
Q 025970 113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID-DSILEER 154 (245)
Q Consensus 113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~-~e~~~~R 154 (245)
|+|--+....+. . .....| ++||+..| .+++.+|
T Consensus 202 ILDId~QGa~~l---k----~~~~~p-i~IFI~PPS~eeL~~r 236 (308)
T 3kfv_A 202 LLDVTPSAIERL---N----YVQYYP-IVVFFIPESRPALKAL 236 (308)
T ss_dssp EECCCHHHHHHH---H----HTTCCC-EEEEEEESCHHHHHHH
T ss_pred EEEECHHHHHHH---H----hcCCCC-EEEEEeCCCHHHHHHH
Confidence 888543332222 2 122455 56666654 4556654
No 466
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.60 E-value=0.006 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+++.++.|.|+|||||||+|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999864
No 467
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.59 E-value=0.0063 Score=46.90 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
....|+|+|.+|+||||+.++|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999853
No 468
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0046 Score=47.21 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+...|+|+|.+|+||||+.++|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 469
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.57 E-value=0.007 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.+...|+|+|.+|+||||+.++|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4457899999999999999999975
No 470
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.57 E-value=0.0085 Score=46.81 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+...|+|+|.+|+||||+.++|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 45679999999999999999999753
No 471
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.56 E-value=0.016 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhHh
Q 025970 33 RLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 33 ~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++|.|++|+||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999988776
No 472
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.56 E-value=0.0055 Score=55.84 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=28.5
Q ss_pred HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
++.++.+-+++.+++|.|++||||||+.+.|+..+
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34444555778899999999999999999998665
No 473
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.56 E-value=0.0079 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|+|.|.||+||||+.++|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999853
No 474
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.55 E-value=0.011 Score=51.97 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++-+++|.|+||+||||++..++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 467799999999999999999887643
No 475
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.53 E-value=0.0072 Score=48.97 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhH
Q 025970 32 KRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 32 ~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
+.|+|.|.|||||||+.+.|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37899999999999999999754
No 476
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.50 E-value=0.0087 Score=51.62 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
....+..+.|.|+||+||||+.++|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 445678999999999999999999987
No 477
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.49 E-value=0.0044 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...+.|+|+|.+|+||||+.++|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998754
No 478
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.49 E-value=0.0071 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.....|+|.|.+|+||||+.++|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3457899999999999999999874
No 479
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.49 E-value=0.039 Score=48.62 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=23.8
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~ 61 (245)
.+..+..|+|+||+|+| ++++|.+.+.-.+.+
T Consensus 220 ~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s 251 (468)
T 3shw_A 220 EAGFLRPVTIFGPIADV---AREKLAREEPDIYQI 251 (468)
T ss_dssp CCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE
T ss_pred cCCCCCEEEEECCCHHH---HHHHHHHhCCCceee
Confidence 34566778999999999 999988887533333
No 480
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.48 E-value=0.0082 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...|+|+|.+||||||+.++|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999754
No 481
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.46 E-value=0.013 Score=46.58 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATG 63 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~ 63 (245)
....|++.|++|+||||++-.++..+ |. .++++|
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 35679999999999999987777654 54 344554
No 482
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.46 E-value=0.013 Score=48.01 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
...+.|+|+|.+|+||||+.++|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 34668999999999999999999754
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.45 E-value=0.009 Score=49.89 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~ 63 (245)
+.-++|.|++|+||||++..|.++ |+.+++.|
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 567899999999999999999865 88777654
No 484
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.45 E-value=0.0028 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
.++.+++|.|++||||||+.+.|..
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcc
Confidence 3567999999999999999999873
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.42 E-value=0.0085 Score=54.72 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.0
Q ss_pred CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
...++-+++|+|+.||||||+.+.|+-.+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45678899999999999999999998544
No 486
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.41 E-value=0.0073 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
...|+|+|++|+||||+.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45779999999999999999863
No 487
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.40 E-value=0.0038 Score=48.04 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=6.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
+...|+|+|.+|+||||+.++|..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEC----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999998874
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.0077 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998644
No 489
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.38 E-value=0.019 Score=51.95 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
..+.+++|.|++|+||||++..++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4466899999999999999998853
No 490
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.37 E-value=0.0095 Score=53.61 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999998644
No 491
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.36 E-value=0.0076 Score=50.28 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=27.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~ 64 (245)
+.-++|.|++|+||||++-.|.+ .|+.+++-|.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~ 179 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDA 179 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCE
Confidence 45689999999999999999975 5887776653
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.011 Score=46.44 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKD 53 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~ 53 (245)
....|+|+|.+|+||||+.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999874
No 493
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.31 E-value=0.01 Score=54.24 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998643
No 494
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.015 Score=48.44 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhH
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
++.++|+||||+||||+++.|++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 668899999999999999999975
No 495
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.27 E-value=0.012 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhHh
Q 025970 31 DKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 31 ~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
..+++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999988755
No 496
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.26 E-value=0.0055 Score=55.64 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=27.8
Q ss_pred HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970 22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY 55 (245)
Q Consensus 22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~ 55 (245)
+.++.+.+++.+++|.||+||||||+.+.|...+
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3444455778899999999999999999988655
No 497
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.016 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970 29 KPDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 29 ~~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
..+..++|+|++|+||||+.+.|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999754
No 498
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.23 E-value=0.01 Score=46.39 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=22.6
Q ss_pred CCCCcEEEEECCCCCChhHHHHH-HHhHh
Q 025970 28 SKPDKRLVLIGPPGSGKGTQSPV-IKDEY 55 (245)
Q Consensus 28 ~~~~~~i~i~G~~GsGKSt~~~~-La~~~ 55 (245)
+.+...|+|+|.+|+||||+.++ +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34567899999999999999998 54443
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.19 E-value=0.012 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
.+..++|+|+||+||||+.++|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999854
No 500
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.19 E-value=0.012 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhH
Q 025970 30 PDKRLVLIGPPGSGKGTQSPVIKDE 54 (245)
Q Consensus 30 ~~~~i~i~G~~GsGKSt~~~~La~~ 54 (245)
....|+|.|.+|+||||+.++|...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998754
Done!