Query 025972
Match_columns 245
No_of_seqs 262 out of 3615
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 21:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.7 2.6E-16 9E-21 113.9 13.4 103 129-243 10-112 (126)
2 3ro3_A PINS homolog, G-protein 99.7 4E-15 1.4E-19 109.8 19.9 138 97-244 24-161 (164)
3 4gcn_A Protein STI-1; structur 99.7 1.2E-15 4E-20 110.5 14.4 108 129-242 5-113 (127)
4 1qqe_A Vesicular transport pro 99.7 5.5E-15 1.9E-19 121.8 19.7 139 94-242 49-188 (292)
5 3gyz_A Chaperone protein IPGC; 99.7 7.9E-16 2.7E-20 115.0 12.7 103 129-243 33-135 (151)
6 3ulq_A Response regulator aspa 99.7 8.6E-15 2.9E-19 124.6 20.5 136 97-242 118-254 (383)
7 3u3w_A Transcriptional activat 99.7 8.4E-15 2.9E-19 120.6 19.1 136 98-243 131-268 (293)
8 3ulq_A Response regulator aspa 99.7 1.6E-14 5.5E-19 123.0 21.1 145 89-243 150-295 (383)
9 3q15_A PSP28, response regulat 99.6 1.7E-14 5.8E-19 122.8 19.7 136 97-242 116-252 (378)
10 3gw4_A Uncharacterized protein 99.6 3.5E-14 1.2E-18 109.4 19.3 138 96-243 40-178 (203)
11 2ifu_A Gamma-SNAP; membrane fu 99.6 1.2E-14 4.2E-19 120.5 17.7 114 125-239 109-222 (307)
12 2hr2_A Hypothetical protein; a 99.6 1.9E-14 6.4E-19 107.5 16.2 116 130-245 9-135 (159)
13 3ro3_A PINS homolog, G-protein 99.6 4E-14 1.4E-18 104.3 17.6 118 126-243 3-120 (164)
14 2qfc_A PLCR protein; TPR, HTH, 99.6 2.5E-14 8.6E-19 117.7 18.1 136 98-243 131-268 (293)
15 4ga2_A E3 SUMO-protein ligase 99.6 2.9E-15 9.8E-20 111.5 10.9 119 97-243 12-131 (150)
16 3q15_A PSP28, response regulat 99.6 7.6E-14 2.6E-18 118.7 19.9 141 92-243 151-292 (378)
17 2qfc_A PLCR protein; TPR, HTH, 99.6 2.9E-14 9.9E-19 117.3 16.1 153 81-243 74-227 (293)
18 3u3w_A Transcriptional activat 99.6 7.6E-14 2.6E-18 114.8 18.0 151 82-243 75-227 (293)
19 4gyw_A UDP-N-acetylglucosamine 99.6 1.2E-14 4.3E-19 133.7 14.1 130 84-241 11-140 (723)
20 3upv_A Heat shock protein STI1 99.6 3.3E-14 1.1E-18 101.9 12.7 100 131-242 3-102 (126)
21 2vgx_A Chaperone SYCD; alterna 99.6 4.4E-14 1.5E-18 104.9 13.5 103 129-243 18-120 (148)
22 3sz7_A HSC70 cochaperone (SGT) 99.6 3.6E-14 1.2E-18 106.6 13.1 105 127-243 6-110 (164)
23 2ifu_A Gamma-SNAP; membrane fu 99.6 1.4E-13 4.8E-18 114.1 17.4 142 91-243 45-186 (307)
24 3rkv_A Putative peptidylprolyl 99.6 7.8E-14 2.7E-18 104.5 14.4 109 129-243 8-128 (162)
25 2xcb_A PCRH, regulatory protei 99.6 7.7E-14 2.6E-18 102.5 13.5 103 129-243 15-117 (142)
26 1qqe_A Vesicular transport pro 99.6 1.3E-13 4.5E-18 113.5 16.1 148 84-241 79-228 (292)
27 3sf4_A G-protein-signaling mod 99.5 9.8E-13 3.4E-17 111.4 20.5 138 96-243 201-338 (406)
28 3gw4_A Uncharacterized protein 99.5 5.3E-13 1.8E-17 102.7 16.8 113 131-243 25-138 (203)
29 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.8E-17 107.7 19.1 138 97-244 198-335 (338)
30 3sf4_A G-protein-signaling mod 99.5 2.2E-12 7.5E-17 109.3 21.3 136 98-243 163-298 (406)
31 2pl2_A Hypothetical conserved 99.5 1.5E-13 5E-18 108.3 12.8 124 90-241 13-147 (217)
32 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4.2E-17 111.6 19.2 137 97-243 238-374 (411)
33 4a1s_A PINS, partner of inscut 99.5 2.5E-12 8.5E-17 109.7 20.9 136 98-243 199-334 (411)
34 3urz_A Uncharacterized protein 99.5 1.1E-13 3.8E-18 108.3 11.5 147 84-242 6-187 (208)
35 3ro2_A PINS homolog, G-protein 99.5 3.8E-12 1.3E-16 104.4 20.6 136 98-243 159-294 (338)
36 3edt_B KLC 2, kinesin light ch 99.5 2E-12 6.9E-17 103.8 18.0 151 85-243 46-200 (283)
37 3vtx_A MAMA; tetratricopeptide 99.5 5.6E-13 1.9E-17 101.5 13.5 99 133-243 74-172 (184)
38 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.1E-13 1.4E-17 104.5 12.9 105 133-243 38-152 (213)
39 3q49_B STIP1 homology and U bo 99.5 6.1E-13 2.1E-17 96.2 13.0 100 132-243 9-108 (137)
40 4i17_A Hypothetical protein; T 99.5 4.6E-13 1.6E-17 105.6 12.9 131 84-241 9-146 (228)
41 1hxi_A PEX5, peroxisome target 99.5 2.2E-13 7.7E-18 97.5 9.8 98 134-243 19-116 (121)
42 2pl2_A Hypothetical conserved 99.5 4E-13 1.4E-17 105.8 11.5 121 94-243 51-182 (217)
43 4gyw_A UDP-N-acetylglucosamine 99.5 3E-13 1E-17 124.5 12.3 131 85-243 46-176 (723)
44 3edt_B KLC 2, kinesin light ch 99.5 1.8E-12 6.2E-17 104.1 15.5 116 127-242 38-157 (283)
45 3nf1_A KLC 1, kinesin light ch 99.5 3.3E-12 1.1E-16 104.2 16.8 138 97-242 42-183 (311)
46 4gco_A Protein STI-1; structur 99.5 9.5E-13 3.3E-17 94.9 11.7 115 80-222 11-125 (126)
47 3nf1_A KLC 1, kinesin light ch 99.4 7.9E-12 2.7E-16 102.0 18.1 138 97-242 84-225 (311)
48 3urz_A Uncharacterized protein 99.4 2.6E-12 8.8E-17 100.5 14.1 99 133-243 5-119 (208)
49 2vyi_A SGTA protein; chaperone 99.4 3.7E-12 1.3E-16 90.4 13.8 106 126-243 6-111 (131)
50 3vtx_A MAMA; tetratricopeptide 99.4 3.2E-12 1.1E-16 97.3 14.0 129 87-243 10-138 (184)
51 4ga2_A E3 SUMO-protein ligase 99.4 1.4E-13 4.9E-18 102.2 6.2 94 138-243 3-96 (150)
52 2xev_A YBGF; tetratricopeptide 99.4 1.9E-12 6.4E-17 92.6 11.7 104 134-243 4-107 (129)
53 1elw_A TPR1-domain of HOP; HOP 99.4 2.5E-12 8.6E-17 89.7 12.2 100 132-243 4-103 (118)
54 1a17_A Serine/threonine protei 99.4 4.4E-12 1.5E-16 94.3 13.7 103 129-243 10-112 (166)
55 4i17_A Hypothetical protein; T 99.4 1.9E-12 6.5E-17 102.0 12.2 131 92-244 52-212 (228)
56 1elr_A TPR2A-domain of HOP; HO 99.4 4.1E-12 1.4E-16 90.3 12.9 106 131-242 3-109 (131)
57 1p5q_A FKBP52, FK506-binding p 99.4 1.1E-12 3.8E-17 110.3 11.4 110 128-243 143-261 (336)
58 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.4E-12 1.5E-16 101.9 14.3 122 98-243 21-142 (275)
59 2lni_A Stress-induced-phosphop 99.4 1.2E-12 4.1E-17 93.6 9.5 103 129-243 13-115 (133)
60 2fbn_A 70 kDa peptidylprolyl i 99.4 4E-12 1.4E-16 98.3 12.9 110 128-243 34-153 (198)
61 3uq3_A Heat shock protein STI1 99.4 2E-11 6.7E-16 96.9 17.2 107 130-242 77-203 (258)
62 2h6f_A Protein farnesyltransfe 99.4 8.5E-13 2.9E-17 113.0 9.8 96 134-241 133-229 (382)
63 3k9i_A BH0479 protein; putativ 99.4 1E-12 3.6E-17 93.1 8.6 88 144-243 2-92 (117)
64 1p5q_A FKBP52, FK506-binding p 99.4 8E-12 2.7E-16 105.0 15.2 150 81-243 146-296 (336)
65 1hz4_A MALT regulatory protein 99.4 7.1E-11 2.4E-15 99.7 21.1 136 97-243 29-166 (373)
66 2e2e_A Formate-dependent nitri 99.4 2.9E-12 9.8E-17 97.1 10.1 99 133-243 45-146 (177)
67 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 3E-12 1E-16 112.1 11.6 109 128-242 264-381 (457)
68 2dba_A Smooth muscle cell asso 99.4 5.8E-12 2E-16 91.8 11.2 104 131-243 27-130 (148)
69 1na0_A Designed protein CTPR3; 99.4 1.4E-11 4.7E-16 86.6 12.6 100 132-243 9-108 (125)
70 3qky_A Outer membrane assembly 99.4 9.2E-12 3.2E-16 100.2 13.1 142 83-243 16-179 (261)
71 3as5_A MAMA; tetratricopeptide 99.4 3.2E-11 1.1E-15 90.7 15.3 99 133-243 77-175 (186)
72 3uq3_A Heat shock protein STI1 99.4 1.9E-11 6.3E-16 97.1 14.5 101 130-242 137-237 (258)
73 1a17_A Serine/threonine protei 99.4 1.8E-11 6.1E-16 90.9 13.5 132 84-243 15-148 (166)
74 3n71_A Histone lysine methyltr 99.4 4.6E-11 1.6E-15 105.3 17.9 143 92-242 319-465 (490)
75 3as5_A MAMA; tetratricopeptide 99.3 2.5E-11 8.4E-16 91.3 13.6 127 89-243 15-141 (186)
76 2fo7_A Synthetic consensus TPR 99.3 2.8E-11 9.6E-16 85.9 13.2 98 134-243 37-134 (136)
77 2kck_A TPR repeat; tetratricop 99.3 1.8E-12 6.1E-17 89.7 6.7 98 134-243 8-108 (112)
78 1ihg_A Cyclophilin 40; ppiase 99.3 1.9E-11 6.5E-16 104.2 14.4 109 129-243 220-338 (370)
79 2c2l_A CHIP, carboxy terminus 99.3 1.1E-11 3.6E-16 101.6 11.0 100 132-243 4-103 (281)
80 3n71_A Histone lysine methyltr 99.3 7.8E-11 2.7E-15 103.8 16.7 110 134-243 311-424 (490)
81 2q7f_A YRRB protein; TPR, prot 99.3 2.3E-11 8E-16 95.8 12.1 119 96-242 71-189 (243)
82 1hz4_A MALT regulatory protein 99.3 1.3E-10 4.6E-15 98.0 17.3 136 96-242 67-204 (373)
83 4eqf_A PEX5-related protein; a 99.3 3E-11 1E-15 101.5 13.2 121 97-243 192-312 (365)
84 2vq2_A PILW, putative fimbrial 99.3 5.7E-11 2E-15 92.2 13.8 121 97-243 57-178 (225)
85 1fch_A Peroxisomal targeting s 99.3 6.2E-11 2.1E-15 99.3 14.8 124 94-243 193-316 (368)
86 4abn_A Tetratricopeptide repea 99.3 2.3E-11 8E-16 106.8 12.1 123 92-243 147-289 (474)
87 3qww_A SET and MYND domain-con 99.3 1.3E-10 4.3E-15 100.9 16.2 105 139-243 305-413 (433)
88 3upv_A Heat shock protein STI1 99.3 7.5E-11 2.6E-15 84.1 12.2 121 83-225 5-125 (126)
89 2q7f_A YRRB protein; TPR, prot 99.3 4.4E-11 1.5E-15 94.2 12.0 119 97-243 106-224 (243)
90 2fbn_A 70 kDa peptidylprolyl i 99.3 2.2E-11 7.7E-16 94.0 9.9 150 78-239 34-184 (198)
91 4eqf_A PEX5-related protein; a 99.3 8.4E-11 2.9E-15 98.8 14.1 105 132-242 133-277 (365)
92 2vsy_A XCC0866; transferase, g 99.3 8.2E-11 2.8E-15 105.3 14.7 124 92-243 33-159 (568)
93 3u4t_A TPR repeat-containing p 99.3 6.9E-12 2.3E-16 100.9 6.8 97 134-242 76-172 (272)
94 1hh8_A P67PHOX, NCF-2, neutrop 99.3 5.1E-11 1.7E-15 92.5 11.4 98 131-243 5-102 (213)
95 2vsy_A XCC0866; transferase, g 99.2 2.7E-11 9.4E-16 108.4 10.9 100 132-243 23-122 (568)
96 2ho1_A Type 4 fimbrial biogene 99.2 9.2E-11 3.1E-15 93.2 12.7 118 97-242 86-205 (252)
97 3hym_B Cell division cycle pro 99.2 6.3E-11 2.1E-15 97.4 11.9 101 134-240 195-298 (330)
98 3hym_B Cell division cycle pro 99.2 3.5E-11 1.2E-15 98.9 10.4 137 85-243 128-267 (330)
99 2pzi_A Probable serine/threoni 99.2 7.5E-12 2.6E-16 114.8 6.9 122 91-241 442-563 (681)
100 3qky_A Outer membrane assembly 99.2 2E-10 6.9E-15 92.3 14.4 143 86-244 56-227 (261)
101 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 6.8E-11 2.3E-15 103.5 12.2 148 80-240 266-414 (457)
102 2h6f_A Protein farnesyltransfe 99.2 4.7E-11 1.6E-15 102.1 10.9 104 128-243 93-197 (382)
103 2if4_A ATFKBP42; FKBP-like, al 99.2 1.9E-11 6.4E-16 102.9 8.2 109 128-242 175-294 (338)
104 3cv0_A Peroxisome targeting si 99.2 2E-10 6.8E-15 94.3 14.1 119 97-243 153-271 (327)
105 4b4t_Q 26S proteasome regulato 99.2 3.5E-10 1.2E-14 97.1 16.2 144 90-243 63-206 (434)
106 4b4t_Q 26S proteasome regulato 99.2 3.9E-10 1.3E-14 96.8 16.5 155 88-242 10-165 (434)
107 2fo7_A Synthetic consensus TPR 99.2 1.5E-10 5.2E-15 82.0 11.5 98 134-243 3-100 (136)
108 2l6j_A TPR repeat-containing p 99.2 3.6E-12 1.2E-16 88.5 2.7 100 132-237 4-103 (111)
109 1w3b_A UDP-N-acetylglucosamine 99.2 7.3E-11 2.5E-15 100.1 11.3 94 135-240 240-333 (388)
110 2vq2_A PILW, putative fimbrial 99.2 2.1E-10 7.1E-15 89.0 12.9 101 131-243 112-213 (225)
111 4gcn_A Protein STI-1; structur 99.2 8.6E-10 2.9E-14 79.3 15.1 102 84-201 10-112 (127)
112 4g1t_A Interferon-induced prot 99.2 1.2E-10 4.1E-15 101.1 12.5 114 130-243 49-169 (472)
113 1zu2_A Mitochondrial import re 99.2 1.1E-11 3.6E-16 92.4 4.8 86 146-243 16-122 (158)
114 3ieg_A DNAJ homolog subfamily 99.2 2.3E-10 8E-15 94.8 13.4 132 84-243 5-151 (359)
115 1fch_A Peroxisomal targeting s 99.2 6.4E-11 2.2E-15 99.2 10.1 126 97-244 232-362 (368)
116 3rkv_A Putative peptidylprolyl 99.2 1.3E-10 4.3E-15 86.8 10.5 134 81-229 10-149 (162)
117 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-10 1.1E-14 89.5 13.2 140 85-243 7-178 (225)
118 1wao_1 Serine/threonine protei 99.2 1.1E-11 3.9E-16 109.0 5.2 100 132-243 6-105 (477)
119 1w3b_A UDP-N-acetylglucosamine 99.2 1.3E-10 4.3E-15 98.6 11.4 97 134-242 137-233 (388)
120 3cv0_A Peroxisome targeting si 99.2 1.1E-10 3.8E-15 95.8 10.7 105 133-243 207-317 (327)
121 2hr2_A Hypothetical protein; a 99.2 3.9E-10 1.3E-14 84.0 12.5 114 81-204 10-134 (159)
122 2vyi_A SGTA protein; chaperone 99.2 2.5E-10 8.5E-15 80.7 11.1 115 86-228 16-130 (131)
123 2ho1_A Type 4 fimbrial biogene 99.2 3.9E-10 1.3E-14 89.5 13.4 102 131-244 140-241 (252)
124 3u4t_A TPR repeat-containing p 99.2 2.2E-10 7.7E-15 91.9 11.9 126 97-244 123-253 (272)
125 1na3_A Designed protein CTPR2; 99.2 2.1E-10 7.1E-15 76.5 9.8 84 131-226 8-91 (91)
126 2xpi_A Anaphase-promoting comp 99.2 7.4E-10 2.5E-14 98.8 15.7 105 133-243 476-581 (597)
127 2lni_A Stress-induced-phosphop 99.2 2.9E-10 9.9E-15 80.9 10.6 115 85-227 19-133 (133)
128 3ieg_A DNAJ homolog subfamily 99.2 9.7E-10 3.3E-14 91.1 15.3 101 135-243 237-337 (359)
129 4abn_A Tetratricopeptide repea 99.2 2.8E-11 9.6E-16 106.3 6.2 99 132-243 137-252 (474)
130 3qwp_A SET and MYND domain-con 99.2 6.7E-10 2.3E-14 96.4 14.5 107 137-243 292-402 (429)
131 1ihg_A Cyclophilin 40; ppiase 99.1 2.6E-10 9E-15 97.1 11.2 139 84-234 225-363 (370)
132 3gyz_A Chaperone protein IPGC; 99.1 6.7E-10 2.3E-14 82.6 11.5 102 78-201 32-133 (151)
133 2pzi_A Probable serine/threoni 99.1 9E-11 3.1E-15 107.6 8.0 99 132-243 433-531 (681)
134 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.4E-09 4.8E-14 87.1 13.7 129 85-242 46-174 (275)
135 2kat_A Uncharacterized protein 99.1 2.9E-10 9.8E-15 79.9 8.3 81 150-242 3-83 (115)
136 2r5s_A Uncharacterized protein 99.1 3.3E-10 1.1E-14 85.8 9.2 82 149-242 91-174 (176)
137 2yhc_A BAMD, UPF0169 lipoprote 99.1 7.7E-10 2.6E-14 87.2 11.3 105 133-243 5-127 (225)
138 2y4t_A DNAJ homolog subfamily 99.1 1.1E-09 3.9E-14 94.1 13.3 134 82-243 26-174 (450)
139 3sz7_A HSC70 cochaperone (SGT) 99.1 6.4E-10 2.2E-14 83.1 10.2 111 83-221 12-122 (164)
140 2xpi_A Anaphase-promoting comp 99.1 1.6E-09 5.4E-14 96.7 14.6 105 133-243 442-547 (597)
141 3fp2_A TPR repeat-containing p 99.1 6.9E-10 2.4E-14 97.6 12.1 104 134-243 380-493 (537)
142 2gw1_A Mitochondrial precursor 99.1 1.3E-09 4.6E-14 95.0 13.1 101 129-242 3-103 (514)
143 2xcb_A PCRH, regulatory protei 99.1 7.1E-10 2.4E-14 81.0 9.3 101 81-203 17-117 (142)
144 3fp2_A TPR repeat-containing p 99.1 1.1E-09 3.9E-14 96.2 12.2 100 132-243 310-409 (537)
145 2y4t_A DNAJ homolog subfamily 99.1 1E-09 3.5E-14 94.4 11.6 100 130-241 24-123 (450)
146 3mkr_A Coatomer subunit epsilo 99.1 1.2E-09 3.9E-14 89.9 11.1 121 95-243 143-266 (291)
147 3qou_A Protein YBBN; thioredox 99.0 6.5E-10 2.2E-14 91.2 9.3 129 85-241 120-284 (287)
148 2if4_A ATFKBP42; FKBP-like, al 99.0 1.1E-10 3.8E-15 98.1 4.7 149 83-243 180-330 (338)
149 2gw1_A Mitochondrial precursor 99.0 6.7E-10 2.3E-14 96.9 9.4 104 134-243 374-480 (514)
150 2vgx_A Chaperone SYCD; alterna 99.0 7.6E-10 2.6E-14 81.7 8.3 100 81-202 20-119 (148)
151 4g1t_A Interferon-induced prot 99.0 8.9E-10 3E-14 95.6 9.9 137 93-242 62-205 (472)
152 1ouv_A Conserved hypothetical 99.0 4.9E-09 1.7E-13 84.5 13.6 94 132-241 74-179 (273)
153 1wao_1 Serine/threonine protei 99.0 2.8E-10 9.7E-15 100.1 5.7 112 97-236 21-134 (477)
154 3qwp_A SET and MYND domain-con 99.0 1.3E-08 4.6E-13 88.2 16.0 131 87-225 292-426 (429)
155 1ouv_A Conserved hypothetical 99.0 4.2E-09 1.4E-13 84.9 12.1 93 133-241 39-143 (273)
156 1na0_A Designed protein CTPR3; 99.0 8E-09 2.7E-13 72.1 11.7 102 97-226 24-125 (125)
157 3ma5_A Tetratricopeptide repea 99.0 2.9E-09 9.8E-14 73.1 9.0 66 171-242 6-71 (100)
158 2r5s_A Uncharacterized protein 99.0 3E-09 1E-13 80.5 9.9 103 134-242 8-138 (176)
159 1elr_A TPR2A-domain of HOP; HO 99.0 1.3E-08 4.3E-13 71.8 12.4 112 92-226 14-126 (131)
160 3q49_B STIP1 homology and U bo 99.0 5.1E-09 1.7E-13 75.2 10.0 116 86-224 13-128 (137)
161 1elw_A TPR1-domain of HOP; HOP 98.9 6.6E-09 2.3E-13 71.9 10.0 109 86-222 8-116 (118)
162 2kc7_A BFR218_protein; tetratr 98.9 1.2E-09 4.2E-14 74.2 5.9 87 136-242 4-91 (99)
163 3ma5_A Tetratricopeptide repea 98.9 5.7E-09 1.9E-13 71.6 9.3 85 132-226 7-91 (100)
164 3qou_A Protein YBBN; thioredox 98.9 5.8E-09 2E-13 85.4 10.9 66 132-201 219-284 (287)
165 3mkr_A Coatomer subunit epsilo 98.9 1.2E-08 4.1E-13 83.8 12.4 99 133-243 131-231 (291)
166 3k9i_A BH0479 protein; putativ 98.9 5.6E-09 1.9E-13 73.5 8.9 67 129-201 24-90 (117)
167 3qww_A SET and MYND domain-con 98.9 3.1E-08 1.1E-12 85.9 14.9 113 99-219 315-431 (433)
168 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-08 3.8E-13 79.9 11.0 97 134-241 87-197 (212)
169 2dba_A Smooth muscle cell asso 98.9 1.2E-08 4.1E-13 73.8 10.4 110 89-223 35-144 (148)
170 1klx_A Cysteine rich protein B 98.9 2.9E-08 1E-12 72.3 11.9 88 138-241 31-126 (138)
171 2kat_A Uncharacterized protein 98.9 2.4E-08 8.2E-13 69.8 10.9 70 132-207 19-88 (115)
172 2xev_A YBGF; tetratricopeptide 98.9 4.6E-08 1.6E-12 69.3 12.4 110 92-223 12-121 (129)
173 1hxi_A PEX5, peroxisome target 98.9 4.2E-09 1.4E-13 75.0 6.8 87 93-201 28-114 (121)
174 1zu2_A Mitochondrial import re 98.9 4.6E-09 1.6E-13 78.1 6.8 88 97-212 17-125 (158)
175 1na3_A Designed protein CTPR2; 98.9 1.8E-08 6.3E-13 66.8 9.3 67 171-243 8-74 (91)
176 2e2e_A Formate-dependent nitri 98.9 2.7E-09 9.3E-14 80.4 5.6 90 142-243 20-112 (177)
177 2l6j_A TPR repeat-containing p 98.8 1.2E-08 4.2E-13 70.2 8.2 67 171-243 3-69 (111)
178 2c2l_A CHIP, carboxy terminus 98.8 3.8E-09 1.3E-13 86.3 6.3 99 85-205 7-105 (281)
179 3rjv_A Putative SEL1 repeat pr 98.8 3.8E-08 1.3E-12 76.8 10.6 113 96-241 32-158 (212)
180 2v5f_A Prolyl 4-hydroxylase su 98.8 1.1E-07 3.9E-12 65.7 11.0 81 133-219 6-87 (104)
181 2ond_A Cleavage stimulation fa 98.8 4E-08 1.4E-12 81.0 9.9 96 134-241 136-232 (308)
182 4f3v_A ESX-1 secretion system 98.8 1.2E-07 4.3E-12 77.2 12.6 101 134-242 137-238 (282)
183 2ond_A Cleavage stimulation fa 98.7 2.8E-08 9.7E-13 81.9 8.3 100 131-242 98-199 (308)
184 2v5f_A Prolyl 4-hydroxylase su 98.7 2.8E-07 9.5E-12 63.7 10.6 72 172-243 5-77 (104)
185 2kc7_A BFR218_protein; tetratr 98.6 1.4E-07 4.7E-12 63.8 8.4 62 176-243 4-66 (99)
186 2xm6_A Protein corresponding t 98.6 5.4E-07 1.8E-11 78.9 12.6 94 133-242 329-433 (490)
187 2kck_A TPR repeat; tetratricop 98.5 3E-07 1E-11 62.7 6.4 66 172-243 6-71 (112)
188 2xm6_A Protein corresponding t 98.4 2.3E-06 7.7E-11 74.9 12.8 95 131-241 74-180 (490)
189 1dce_A Protein (RAB geranylger 98.4 1E-06 3.4E-11 79.1 10.5 116 99-242 46-174 (567)
190 1dce_A Protein (RAB geranylger 98.4 1.2E-06 4.1E-11 78.6 10.3 119 98-244 89-224 (567)
191 3ffl_A Anaphase-promoting comp 98.3 2.3E-05 8E-10 58.1 13.9 106 132-237 20-147 (167)
192 2ooe_A Cleavage stimulation fa 98.3 2.1E-06 7E-11 76.0 9.5 98 133-241 322-454 (530)
193 3e4b_A ALGK; tetratricopeptide 98.3 1.9E-06 6.5E-11 75.0 8.9 89 134-240 250-350 (452)
194 4f3v_A ESX-1 secretion system 98.3 1.2E-06 4.1E-11 71.4 6.2 95 134-239 104-198 (282)
195 3dra_A Protein farnesyltransfe 98.3 8.9E-06 3E-10 67.2 11.4 117 98-242 49-176 (306)
196 2ooe_A Cleavage stimulation fa 98.2 3E-06 1E-10 74.9 7.8 97 133-241 273-385 (530)
197 1xi4_A Clathrin heavy chain; a 98.2 2.4E-05 8.3E-10 75.7 14.1 96 133-240 1106-1223(1630)
198 1pc2_A Mitochondria fission pr 98.2 9E-06 3.1E-10 59.8 8.9 66 171-241 31-100 (152)
199 3e4b_A ALGK; tetratricopeptide 98.2 3.5E-06 1.2E-10 73.3 7.9 59 134-198 178-243 (452)
200 3bee_A Putative YFRE protein; 98.2 8E-06 2.7E-10 55.1 8.0 65 172-242 6-73 (93)
201 1klx_A Cysteine rich protein B 98.1 5.3E-06 1.8E-10 60.1 5.7 78 146-241 9-90 (138)
202 3dss_A Geranylgeranyl transfer 98.1 8.6E-05 2.9E-09 61.9 13.7 101 132-244 108-225 (331)
203 3bee_A Putative YFRE protein; 98.1 3.7E-05 1.3E-09 51.8 9.3 62 134-201 8-72 (93)
204 3dra_A Protein farnesyltransfe 98.0 2.4E-05 8.1E-10 64.6 9.8 98 134-243 105-217 (306)
205 3dss_A Geranylgeranyl transfer 98.0 0.00019 6.6E-09 59.8 14.8 99 132-242 64-175 (331)
206 1xi4_A Clathrin heavy chain; a 97.9 0.00013 4.5E-09 70.8 13.7 93 134-240 1136-1249(1630)
207 1pc2_A Mitochondria fission pr 97.9 0.00012 3.9E-09 53.8 10.1 76 133-218 33-111 (152)
208 3q7a_A Farnesyltransferase alp 97.9 3.3E-05 1.1E-09 64.8 7.7 117 98-242 70-197 (349)
209 3ly7_A Transcriptional activat 97.8 0.00074 2.5E-08 56.8 15.2 64 171-241 276-339 (372)
210 3txn_A 26S proteasome regulato 97.8 0.0022 7.5E-08 54.6 18.2 110 134-243 101-212 (394)
211 3u64_A Protein TP_0956; tetrat 97.8 9.5E-05 3.2E-09 60.1 8.8 85 148-242 179-270 (301)
212 3q7a_A Farnesyltransferase alp 97.7 5E-05 1.7E-09 63.7 6.7 100 132-243 123-239 (349)
213 3ffl_A Anaphase-promoting comp 97.7 0.0008 2.7E-08 49.8 11.4 89 127-222 58-165 (167)
214 3mv2_B Coatomer subunit epsilo 97.6 0.00084 2.9E-08 55.3 12.2 122 97-241 115-240 (310)
215 3mv2_B Coatomer subunit epsilo 97.6 0.0005 1.7E-08 56.6 10.1 99 134-242 102-208 (310)
216 1b89_A Protein (clathrin heavy 97.5 7.7E-05 2.6E-09 64.4 5.1 93 134-240 124-235 (449)
217 1b89_A Protein (clathrin heavy 97.4 5.2E-05 1.8E-09 65.4 2.8 53 173-239 123-175 (449)
218 3u64_A Protein TP_0956; tetrat 97.2 0.00028 9.6E-09 57.3 4.6 74 122-201 189-269 (301)
219 3ly7_A Transcriptional activat 97.2 0.0014 4.7E-08 55.2 8.1 105 131-241 195-306 (372)
220 1nzn_A CGI-135 protein, fissio 97.0 0.0032 1.1E-07 44.5 7.8 65 172-241 35-103 (126)
221 4b4t_P 26S proteasome regulato 97.0 0.032 1.1E-06 48.3 15.7 113 130-242 135-248 (445)
222 4b4t_R RPN7, 26S proteasome re 96.9 0.006 2E-07 52.6 10.6 106 134-242 133-238 (429)
223 3txn_A 26S proteasome regulato 96.9 0.065 2.2E-06 45.5 16.4 120 97-227 114-235 (394)
224 1nzn_A CGI-135 protein, fissio 96.6 0.015 5.2E-07 41.0 8.4 73 134-216 37-112 (126)
225 1ya0_A SMG-7 transcript varian 95.9 0.023 7.8E-07 49.9 7.8 79 134-224 154-232 (497)
226 3o48_A Mitochondria fission 1 95.7 0.12 3.9E-06 36.8 9.4 64 173-241 41-107 (134)
227 1y8m_A FIS1; mitochondria, unk 95.6 0.12 4.2E-06 37.1 9.4 65 172-241 39-106 (144)
228 2ff4_A Probable regulatory pro 95.6 0.46 1.6E-05 40.1 14.7 107 131-243 114-236 (388)
229 3o48_A Mitochondria fission 1 95.3 0.19 6.5E-06 35.6 9.4 72 134-216 42-116 (134)
230 4b4t_P 26S proteasome regulato 95.0 1.6 5.4E-05 37.6 17.0 84 126-209 171-255 (445)
231 1y8m_A FIS1; mitochondria, unk 94.9 0.22 7.6E-06 35.8 8.9 71 134-215 41-114 (144)
232 1ya0_A SMG-7 transcript varian 94.9 0.088 3E-06 46.2 8.2 63 172-240 152-214 (497)
233 4e6h_A MRNA 3'-END-processing 94.7 0.11 3.9E-06 47.3 8.6 82 149-242 326-408 (679)
234 4gns_B Protein CSD3, chitin bi 94.6 0.36 1.2E-05 44.5 11.6 58 174-237 339-396 (754)
235 4g26_A Pentatricopeptide repea 94.0 0.46 1.6E-05 41.6 10.8 97 134-240 107-203 (501)
236 4e6h_A MRNA 3'-END-processing 93.9 0.48 1.6E-05 43.2 11.1 96 135-241 437-533 (679)
237 4b4t_R RPN7, 26S proteasome re 92.2 0.24 8.2E-06 42.5 6.1 70 171-243 130-199 (429)
238 3mkq_A Coatomer beta'-subunit; 91.6 5.3 0.00018 36.3 14.8 98 134-231 683-802 (814)
239 3kae_A CDC27, possible protein 91.6 3.3 0.00011 30.9 11.7 93 138-241 39-143 (242)
240 4b4t_S RPN3, 26S proteasome re 90.8 0.21 7.1E-06 43.8 4.2 110 132-242 181-300 (523)
241 4h7y_A Dual specificity protei 90.4 1.7 5.8E-05 31.6 7.9 93 143-242 24-124 (161)
242 2uy1_A Cleavage stimulation fa 90.3 2.9 0.0001 36.3 11.2 102 134-243 215-351 (493)
243 4gns_B Protein CSD3, chitin bi 90.3 0.81 2.8E-05 42.1 7.8 59 134-198 339-397 (754)
244 2ff4_A Probable regulatory pro 89.8 1.8 6.3E-05 36.4 9.2 72 133-210 172-244 (388)
245 2wpv_A GET4, UPF0363 protein Y 88.8 8.5 0.00029 31.4 13.8 100 136-236 57-158 (312)
246 4a5x_A MITD1, MIT domain-conta 87.8 1.7 5.8E-05 28.2 5.9 38 126-163 10-47 (86)
247 3mkq_A Coatomer beta'-subunit; 87.1 13 0.00046 33.6 13.8 39 156-198 669-707 (814)
248 4fhn_B Nucleoporin NUP120; pro 85.1 2.9 9.9E-05 40.5 8.5 101 135-236 845-962 (1139)
249 3mkq_B Coatomer subunit alpha; 84.8 10 0.00034 28.2 11.6 84 143-237 16-114 (177)
250 4g26_A Pentatricopeptide repea 84.2 3.5 0.00012 36.0 8.0 84 147-240 85-168 (501)
251 4h7y_A Dual specificity protei 83.8 3.7 0.00012 29.8 6.5 84 103-201 40-123 (161)
252 2crb_A Nuclear receptor bindin 83.6 5.1 0.00017 26.2 6.4 27 175-201 18-44 (97)
253 3spa_A Mtrpol, DNA-directed RN 82.2 20 0.00069 34.4 12.4 99 134-240 129-229 (1134)
254 2crb_A Nuclear receptor bindin 82.0 3.6 0.00012 26.9 5.3 34 210-243 13-46 (97)
255 2uy1_A Cleavage stimulation fa 82.0 4.3 0.00015 35.2 7.7 90 136-238 290-380 (493)
256 3kae_A CDC27, possible protein 82.0 14 0.00047 27.6 10.8 70 132-201 62-143 (242)
257 4b4t_O 26S proteasome regulato 81.8 18 0.00063 30.3 11.3 103 140-242 84-199 (393)
258 2rpa_A Katanin P60 ATPase-cont 81.4 1.6 5.4E-05 27.8 3.4 25 176-200 16-40 (78)
259 2w2u_A Hypothetical P60 katani 81.4 3.8 0.00013 26.3 5.3 31 171-201 18-48 (83)
260 3lpz_A GET4 (YOR164C homolog); 80.5 23 0.00078 29.1 14.2 100 135-235 58-159 (336)
261 2rpa_A Katanin P60 ATPase-cont 80.2 3.5 0.00012 26.2 4.7 34 131-164 11-44 (78)
262 2w2u_A Hypothetical P60 katani 80.0 5 0.00017 25.7 5.5 35 130-164 17-51 (83)
263 2v6y_A AAA family ATPase, P60 79.4 4.8 0.00016 25.8 5.3 29 173-201 12-40 (83)
264 2v6y_A AAA family ATPase, P60 77.7 6.3 0.00022 25.2 5.5 34 131-164 10-43 (83)
265 3re2_A Predicted protein; meni 77.4 13 0.00044 31.0 8.3 87 156-243 239-327 (472)
266 4gq4_A Menin; tumor suppressor 75.8 12 0.00041 31.8 7.9 86 157-243 247-334 (489)
267 1zbp_A Hypothetical protein VP 74.5 7.7 0.00026 30.9 6.3 54 182-241 7-60 (273)
268 1wfd_A Hypothetical protein 15 73.0 12 0.00041 24.4 6.1 36 129-164 12-47 (93)
269 4a5x_A MITD1, MIT domain-conta 72.9 8.8 0.0003 24.7 5.3 33 169-201 13-45 (86)
270 1wfd_A Hypothetical protein 15 72.8 8.7 0.0003 25.1 5.3 31 171-201 14-44 (93)
271 4gq2_M Nucleoporin NUP120; bet 72.8 27 0.00094 33.0 10.7 69 134-202 842-927 (950)
272 2v6x_A Vacuolar protein sortin 72.7 13 0.00044 23.7 6.1 34 130-163 11-44 (85)
273 3t5x_A PCI domain-containing p 72.4 20 0.00067 27.1 8.0 61 127-188 9-69 (203)
274 3u84_A Menin; MLL, JUND, ledgf 71.4 20 0.0007 30.4 8.3 72 171-243 276-349 (550)
275 4gq2_M Nucleoporin NUP120; bet 70.3 51 0.0018 31.2 11.9 70 175-244 843-929 (950)
276 1qsa_A Protein (soluble lytic 69.6 14 0.00048 33.1 7.6 90 138-240 258-347 (618)
277 3mkq_B Coatomer subunit alpha; 69.6 14 0.00047 27.4 6.3 47 182-239 15-61 (177)
278 2cpt_A SKD1 protein, vacuolar 68.8 25 0.00085 24.0 7.1 23 182-204 28-50 (117)
279 2cpt_A SKD1 protein, vacuolar 67.4 8.1 0.00028 26.5 4.4 22 221-242 27-48 (117)
280 4b4t_S RPN3, 26S proteasome re 66.3 11 0.00038 33.0 6.0 73 127-201 226-299 (523)
281 2dl1_A Spartin; SPG20, MIT, st 63.0 21 0.00071 24.4 5.6 17 226-242 36-52 (116)
282 2wpv_A GET4, UPF0363 protein Y 60.3 63 0.0021 26.2 9.2 79 145-224 26-104 (312)
283 1om2_A Protein (mitochondrial 57.2 15 0.00053 24.1 4.1 27 177-203 25-51 (95)
284 2wm9_A Dedicator of cytokinesi 57.1 90 0.0031 26.5 10.9 91 134-224 13-140 (428)
285 1zbp_A Hypothetical protein VP 56.5 45 0.0015 26.5 7.4 55 141-201 6-60 (273)
286 3ax2_A Mitochondrial import re 56.4 14 0.00048 23.0 3.6 28 176-203 21-48 (73)
287 4fhn_B Nucleoporin NUP120; pro 55.5 49 0.0017 31.9 9.0 69 175-243 845-930 (1139)
288 3lew_A SUSD-like carbohydrate 55.0 25 0.00087 30.4 6.4 33 209-241 200-232 (495)
289 3re2_A Predicted protein; meni 54.4 44 0.0015 27.9 7.1 64 151-215 276-339 (472)
290 3lpz_A GET4 (YOR164C homolog); 54.4 80 0.0028 25.9 8.9 82 144-226 24-108 (336)
291 3snx_A SUSD homolog, putative 54.2 22 0.00074 30.5 5.8 32 209-240 188-219 (460)
292 2dl1_A Spartin; SPG20, MIT, st 53.9 27 0.00092 23.8 5.0 19 186-204 36-54 (116)
293 3u84_A Menin; MLL, JUND, ledgf 53.4 37 0.0013 28.9 6.6 64 151-215 298-361 (550)
294 1wy6_A Hypothetical protein ST 53.2 58 0.002 23.3 6.7 33 208-240 121-153 (172)
295 2wb7_A PT26-6P; extra chromoso 51.4 24 0.00084 30.5 5.4 18 149-166 449-466 (526)
296 3myv_A SUSD superfamily protei 51.2 29 0.00099 29.6 6.1 33 209-241 187-219 (454)
297 4a1g_A Mitotic checkpoint seri 49.5 41 0.0014 24.1 5.7 34 208-241 97-130 (152)
298 2wvi_A Mitotic checkpoint seri 49.0 48 0.0016 24.1 6.1 34 208-241 92-125 (164)
299 2v6x_A Vacuolar protein sortin 48.8 48 0.0016 20.9 8.9 27 178-204 19-45 (85)
300 3t5v_B Nuclear mRNA export pro 48.8 91 0.0031 26.7 8.7 63 126-188 214-281 (455)
301 2lif_A Core protein P21; signa 54.3 3.7 0.00013 20.2 0.0 20 25-44 5-24 (27)
302 2cwy_A Hypothetical protein TT 48.4 53 0.0018 21.3 5.7 69 137-207 6-74 (94)
303 3kez_A Putative sugar binding 47.1 33 0.0011 29.3 5.8 34 208-241 192-225 (461)
304 3ax2_A Mitochondrial import re 46.4 27 0.00092 21.7 3.7 27 216-242 21-47 (73)
305 2yin_A DOCK2, dedicator of cyt 46.2 1.4E+02 0.0047 25.4 12.1 90 135-224 38-145 (436)
306 4aez_C MAD3, mitotic spindle c 45.9 56 0.0019 25.1 6.3 34 208-241 146-179 (223)
307 4gq4_A Menin; tumor suppressor 45.9 56 0.0019 27.8 6.6 65 150-215 282-346 (489)
308 3eab_A Spastin; spastin, MIT, 45.1 18 0.00061 23.5 2.8 14 188-201 13-26 (89)
309 2cwy_A Hypothetical protein TT 44.7 44 0.0015 21.7 4.9 62 178-243 7-70 (94)
310 3esl_A Checkpoint serine/threo 44.4 56 0.0019 24.7 6.0 83 153-241 58-144 (202)
311 1om2_A Protein (mitochondrial 44.2 38 0.0013 22.2 4.4 31 134-164 22-52 (95)
312 2vkj_A TM1634; membrane protei 43.7 64 0.0022 20.9 6.8 31 130-160 51-81 (106)
313 3t5x_A PCI domain-containing p 43.0 97 0.0033 23.1 7.3 33 171-203 13-45 (203)
314 1zb1_A BRO1 protein; AIP1, BRO 42.7 1.5E+02 0.005 24.7 9.7 116 128-243 119-288 (392)
315 4b4t_O 26S proteasome regulato 42.6 1.5E+02 0.005 24.7 12.5 73 131-203 126-200 (393)
316 3hdx_A SUSD homolog, SUSD supe 42.1 50 0.0017 28.3 6.2 33 209-241 194-226 (478)
317 2ijq_A Hypothetical protein; s 41.4 98 0.0034 22.4 7.0 73 134-206 34-109 (161)
318 3t5v_B Nuclear mRNA export pro 40.8 1.7E+02 0.0059 25.0 10.8 69 134-203 178-252 (455)
319 2npm_A 14-3-3 domain containin 40.7 1.1E+02 0.0038 24.0 7.4 73 131-204 145-230 (260)
320 3spa_A Mtrpol, DNA-directed RN 40.5 1.4E+02 0.0049 28.8 9.2 68 171-240 126-193 (1134)
321 2vkj_A TM1634; membrane protei 40.5 73 0.0025 20.6 8.3 50 172-224 53-102 (106)
322 2ijq_A Hypothetical protein; s 40.4 46 0.0016 24.1 4.8 68 176-243 36-106 (161)
323 3mcx_A SUSD superfamily protei 39.9 37 0.0013 29.1 5.0 33 209-241 199-231 (477)
324 2br9_A 14-3-3E, 14-3-3 protein 38.2 1.4E+02 0.0047 23.1 8.0 73 131-204 119-205 (234)
325 2npu_A FKBP12-rapamycin comple 37.9 98 0.0034 21.4 7.6 77 137-223 45-121 (126)
326 2br9_A 14-3-3E, 14-3-3 protein 37.3 1.4E+02 0.0048 23.0 10.8 54 188-241 146-202 (234)
327 3efz_A 14-3-3 protein; 14-3-3, 36.5 1.3E+02 0.0045 23.7 7.2 71 130-201 140-226 (268)
328 2r17_C Vacuolar protein sortin 34.8 1.8E+02 0.006 23.4 15.0 111 133-243 100-226 (298)
329 3eab_A Spastin; spastin, MIT, 33.7 47 0.0016 21.5 3.5 15 146-160 33-47 (89)
330 3ubw_A 14-3-3E, 14-3-3 protein 33.0 1.8E+02 0.0061 22.9 10.7 54 188-241 172-228 (261)
331 3iqu_A 14-3-3 protein sigma; s 32.8 1.7E+02 0.0058 22.6 7.9 74 130-204 121-208 (236)
332 3qnk_A Putative lipoprotein; a 32.7 71 0.0024 27.7 5.7 32 209-240 179-210 (517)
333 2o8p_A 14-3-3 domain containin 32.6 1.7E+02 0.0058 22.5 9.1 56 186-241 139-197 (227)
334 1o9d_A 14-3-3-like protein C; 31.5 1.9E+02 0.0065 22.7 8.0 72 131-203 124-209 (260)
335 2xze_A STAM-binding protein; h 30.3 94 0.0032 22.0 5.0 29 214-242 42-70 (146)
336 3jq1_A SUSD superfamily protei 29.9 52 0.0018 28.3 4.3 32 209-240 177-208 (481)
337 3i4g_A SUSD-like carbohydrate 29.7 1.1E+02 0.0036 26.7 6.3 32 209-240 195-226 (528)
338 3efz_A 14-3-3 protein; 14-3-3, 29.3 2.1E+02 0.0071 22.6 7.2 54 188-241 168-226 (268)
339 3uzd_A 14-3-3 protein gamma; s 29.0 2.1E+02 0.007 22.3 10.7 54 188-241 147-203 (248)
340 3r9m_A BRO1 domain-containing 28.1 2.1E+02 0.0073 23.6 7.6 32 172-203 253-284 (376)
341 1o9d_A 14-3-3-like protein C; 27.9 2.2E+02 0.0075 22.3 10.8 54 188-241 151-207 (260)
342 3myv_A SUSD superfamily protei 27.7 96 0.0033 26.3 5.6 32 171-202 189-220 (454)
343 2npm_A 14-3-3 domain containin 27.4 2.2E+02 0.0077 22.3 10.3 53 188-241 172-227 (260)
344 3fap_B FRAP, FKBP12-rapamycin 26.3 1.4E+02 0.0047 19.4 7.8 75 139-223 17-91 (94)
345 3lew_A SUSD-like carbohydrate 25.9 98 0.0034 26.6 5.4 31 171-201 202-232 (495)
346 2ymb_A MITD1, MIT domain-conta 25.3 15 0.00051 29.0 0.0 39 126-164 17-55 (257)
347 2a9u_A Ubiquitin carboxyl-term 25.1 1.6E+02 0.0053 20.8 5.3 27 175-201 45-71 (144)
348 2xze_A STAM-binding protein; h 24.4 1.3E+02 0.0046 21.1 5.0 33 131-163 39-71 (146)
349 3kez_A Putative sugar binding 24.2 1.2E+02 0.004 25.9 5.4 32 171-202 195-226 (461)
350 2a9u_A Ubiquitin carboxyl-term 23.5 2E+02 0.0068 20.3 6.0 40 131-170 41-80 (144)
351 1zb1_A BRO1 protein; AIP1, BRO 23.4 2.9E+02 0.01 22.8 7.7 55 151-205 218-290 (392)
352 2oo2_A Hypothetical protein AF 23.2 62 0.0021 20.8 2.6 27 212-238 35-61 (86)
353 3ubw_A 14-3-3E, 14-3-3 protein 22.8 2.8E+02 0.0095 21.8 9.9 75 129-204 143-231 (261)
354 2o8p_A 14-3-3 domain containin 22.8 2.6E+02 0.0089 21.4 8.7 71 132-202 120-198 (227)
355 1qsa_A Protein (soluble lytic 22.0 1E+02 0.0036 27.5 4.8 92 142-239 295-408 (618)
356 3snx_A SUSD homolog, putative 21.4 1.3E+02 0.0044 25.6 5.1 30 171-200 190-219 (460)
357 3uzd_A 14-3-3 protein gamma; s 20.7 3E+02 0.01 21.4 9.9 74 130-204 119-206 (248)
358 3iqu_A 14-3-3 protein sigma; s 20.5 3E+02 0.01 21.2 10.6 53 188-240 149-204 (236)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=2.6e-16 Score=113.86 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
+..+..+...|..|+..|+|++|+..|++++++.|. ...++.++|.++..+|++++|+..|++++++ +
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~ 77 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRL------D 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------h
Confidence 345677888999999999999999999999999888 7889999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|..+.+++++|.+|..+|++++|.++|+++++.-+
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 88899999999999999999999999999998754
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.70 E-value=4e-15 Score=109.81 Aligned_cols=138 Identities=23% Similarity=0.311 Sum_probs=123.4
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. .++....+.++..+|.++...|++++|+.++++++++.+..+++.....++.
T Consensus 24 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (164)
T 3ro3_A 24 NFRDAVIAHEQRLLIAKE----------FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93 (164)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH----------hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 456666667777776654 2555667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
++|.++...|++++|+.++++++++.++.++.+..+.++.++|.+|...|++++|.++++++++..++
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888999999999999999999999999999998753
No 3
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.68 E-value=1.2e-15 Score=110.51 Aligned_cols=108 Identities=16% Similarity=0.341 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-C
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-E 207 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~-d 207 (245)
...+.++..+|..++..|+|++|+.+|++|+++.|+ ...++.++|.++..+|+|++|+..+++++++..... +
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 345677888999999999999999999999999887 788999999999999999999999999999976643 3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+..+.++.++|.+|..+|++++|+++|++++...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44567899999999999999999999999999753
No 4
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=5.5e-15 Score=121.79 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH
Q 025972 94 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 173 (245)
...+.+.++..|.+++...+. .++....+.++.++|.+|..+|++++|+.+|++|+++.+..++......
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334667788888888887665 3566667888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 174 AARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 174 a~~~lg~~~~~~-g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++.++|.++... |++++|+.+|++++++....++......++.++|.+|..+|++++|+.+|+++++..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999996 999999999999999988777766667889999999999999999999999999865
No 5
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=7.9e-16 Score=114.98 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
+.....++.+|..++..|++++|+..|++++++.|. ...++.++|.++..+|+|++|+..|++++++ +
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l------~ 100 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL------G 100 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------S
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------C
Confidence 345668889999999999999999999999999998 8889999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|..+.+++++|.+|..+|++++|..+|+++++...
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88889999999999999999999999999998754
No 6
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.67 E-value=8.6e-15 Score=124.64 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=94.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAA 175 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~ 175 (245)
+.+.++..+.+++..... .++....+.++..+|.+|...|++++|+.++++|+++.+..++ ......++
T Consensus 118 ~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp CHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 455556666666655443 2445556666777777777777777777777777777777665 55566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.++|.++..+|+|++|+.+|++++++.++.++.+..+.++.++|.+|..+|++++|..+|+++++..
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777666677777777777777777777777777777654
No 7
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.66 E-value=8.4e-15 Score=120.56 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=117.6
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAAR 176 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~~~~a~~ 176 (245)
.+.++..+.+++..... ..+....+.++..+|.+|...|++++|+.+|+++++..+.. .+......+++
T Consensus 131 ~~~Ai~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHHHHHHHHTCCC----------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 45566666666664333 23344566778899999999999999999999999999988 67777888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~~~ 243 (245)
++|.++..+|+|++|+.++++++++.++.++....+.+++++|.+|..+| ++++|.++|++|+..++
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888999999999999999 57999999999999875
No 8
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.66 E-value=1.6e-14 Score=122.97 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC
Q 025972 89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD 167 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d 167 (245)
+.......+.+.++..+.+++...+. .++ ....+.++..+|.+|...|++++|+.+|++++++.+..++
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKE----------HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHT----------CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh----------CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 33333344677888888888888765 233 6677888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
......++.++|.++..+|++++|+.++++++++.++.++.+..+.++.++|.+|..+|++++|..+++++++..+
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888788899999999999999999999999999998753
No 9
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.65 E-value=1.7e-14 Score=122.77 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=105.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAA 175 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~ 175 (245)
+.+.++..+.+++..... .++....+..+..+|.+|...|++++|+.++++|+++.+..++ ....+.++
T Consensus 116 ~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp CHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 455666666666665544 3556667777888888888888888888888888888887766 45677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.++|.++...|+|++|+++|++++++.++.++.+..+.++.++|.+|..+|++++|..+++++++..
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888777777777888888888888888888888888888754
No 10
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.64 E-value=3.5e-14 Score=109.42 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=122.0
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-ChHHHHHH
Q 025972 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKA 174 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-d~~~~~~a 174 (245)
.+.+.++..+.+++..... .++....+.++..+|.++...|++++|..++++++++.+..+ ++.....+
T Consensus 40 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 109 (203)
T 3gw4_A 40 DRFDEARASFQALQQQAQK----------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 3455666667777776654 356677788899999999999999999999999999999988 45578899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.++|.++...|++++|+.++++++++.+..++....+.++.++|.+|...|++++|..+++++++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888888999999999999999999999999999775
No 11
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.64 E-value=1.2e-14 Score=120.52 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=72.2
Q ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025972 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.++....+.++.++|.+|.. |++++|+.+|++|+++.+..++......++.++|.++..+|+|++|+.+|++++++..+
T Consensus 109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666 66666666666666666666666556666666666666666666666666666666665
Q ss_pred cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 205 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 205 ~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.++.+....++.++|.++..+|++++|..+|++++
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55545555566666666666666666666666665
No 12
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.63 E-value=1.9e-14 Score=107.48 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
..+..+...|..++..|+|++|+..|++|+++.|+.. .......++.|+|.++..+|+|++|+..|.++|+++.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 3567788999999999999999999999999999832 1223456999999999999999999999999999865
Q ss_pred HcC-CcchHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 025972 204 REG-EYSGSTEAY----GAIADCYTELGDLERAARFYDKYISRLESD 245 (245)
Q Consensus 204 ~~~-d~~~~~~a~----~~la~~y~~~g~~~~A~~~y~~al~~~~~~ 245 (245)
+.+ -+|..+.+| +++|.++..+|++++|+.+|++++++..+|
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 543 367788889 999999999999999999999999987654
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.63 E-value=4e-14 Score=104.35 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=110.3
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025972 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
++....+.++..+|.++...|++++|+.++++++++.+..++......++.++|.++...|++++|+.++++++++.+..
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.+....++.++|.+|...|++++|..+++++++..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999998754
No 14
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=2.5e-14 Score=117.66 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=112.4
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAAR 176 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~ 176 (245)
.+.++..+.+++...+. ..+....+.++..+|.+|...|++++|+.+|++++++.+..++... ...+++
T Consensus 131 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHHHHHHHTTCCC----------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 34455555555544332 1333345678889999999999999999999999999888766544 348999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A-~~~y~~al~~~~ 243 (245)
++|.++..+|+|++|+.++++++++....++....+.+++++|.+|..+|++++| ..+|++++..++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777777899999999999999999999 888999998765
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.62 E-value=2.9e-15 Score=111.54 Aligned_cols=119 Identities=12% Similarity=0.110 Sum_probs=101.8
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+++++...+ ......+.+|.+|+..|+|++|+.+|++++++.|+ ...++.
T Consensus 12 ~~e~ai~~~~~a~~~~p----------------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~ 69 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPR----------------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHR 69 (150)
T ss_dssp HHHHHHHHHHHHSCSHH----------------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred hHHHHHHHHHHhcccCc----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 34455555666655443 34556778999999999999999999999999988 789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF-YDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~-y~~al~~~~ 243 (245)
++|.++...|++++|+..|++++++ +|..+.++.++|.+|...|++++|.+. ++++++..+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999 888899999999999999999887765 589998754
No 16
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=7.6e-14 Score=118.72 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
.....+...++..+.+++...+.. .+ ....+.++..+|.+|...|++++|+.+|++++++.+..+++..
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNH----------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTS----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 333346677788888888877651 22 4567888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++.++|.++..+|++++|+.++++++++.+..++.. .+.++.++|.+|..+|++++|..+++++++..+
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877544 499999999999999999999999999998754
No 17
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=2.9e-14 Score=117.30 Aligned_cols=153 Identities=12% Similarity=0.026 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
....+.+++.......+.+.++..+.+++...+. ...........+.+|..+...|++++|+.+++++++
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3445555566555555677777777777765442 122233445566789999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~-~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
+.+...+......+++++|.+|..+|+|++|+.+|++++++.+..++.+... .+++++|.+|..+|++++|..++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 8877777777788999999999999999999999999999988877655433 799999999999999999999999999
Q ss_pred HHhh
Q 025972 240 SRLE 243 (245)
Q Consensus 240 ~~~~ 243 (245)
+...
T Consensus 224 ~~~~ 227 (293)
T 2qfc_A 224 EISC 227 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 18
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.59 E-value=7.6e-14 Score=114.78 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEE-LLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
...+.+++.......+.+.++..+.+.+...+. .+.... +..+..+|..+...+++++|+.+++++++
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-----------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC-----------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 345555555555555667777777777664432 222222 33444589999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
+.....+......++.++|.+|..+|+|++|+.+|+++++..++. ++.+..+.+++++|.+|..+|++++|.+++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 877777777778899999999999999999999999999999887 6677888899999999999999999999999999
Q ss_pred HHhh
Q 025972 240 SRLE 243 (245)
Q Consensus 240 ~~~~ 243 (245)
+...
T Consensus 224 ~~~~ 227 (293)
T 3u3w_A 224 EISC 227 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=1.2e-14 Score=133.69 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+++.+......++.+.++..|++++...+. ...++.++|.+|..+|++++|+.+|++|+++.+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P 74 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444445566666666666665543 133555566666666666666666666666665
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+ ...+++++|.++..+|++++|++.|++++++ +|..+.+++++|.+|..+|++++|+++|+++++.
T Consensus 75 ~------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 75 T------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 5566666666666666666666666666666 5556666666666666666666666666666654
No 20
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.3e-14 Score=101.91 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+..+...|..++..|++++|+..|++++++.|. ...++.++|.++..+|++++|+..+++++++ +|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEK------DPN 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC
Confidence 4557788899999999999999999999999887 6789999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...+++++|.+|..+|++++|..+|+++++..
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999876
No 21
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=4.4e-14 Score=104.88 Aligned_cols=103 Identities=21% Similarity=0.143 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
+.....++.+|..++..|++++|+..|++++++.|. ...++.++|.++...|++++|+..|++++.+ +
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~ 85 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------D 85 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------S
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence 345667888999999999999999999999999887 7888999999999999999999999999999 7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|..+.+++++|.+|..+|++++|..+|+++++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 88889999999999999999999999999998754
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=3.6e-14 Score=106.64 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025972 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
+....+..+..+|.+++..|++++|+..|++++++.+. ...++.++|.++...|+|++|+.+|++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVV----- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 34456778889999999999999999999999999887 6889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|....+++++|.+|..+|++++|..+|+++++...
T Consensus 75 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 75 -DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 788899999999999999999999999999998754
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.57 E-value=1.4e-13 Score=114.14 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025972 91 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
......+.+.++..|.+++...+. .++....+..+..+|.+|..+|++++|+.+|++|+++++..+++..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 333445556666677777777666 3667778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++.++|.++.. |++++|+.+|++++++.+..++......++.++|.+|..+|++++|+.+|+++++...
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999999999999999999999999999999999998764
No 24
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.57 E-value=7.8e-14 Score=104.54 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------------PIEEKKAARGLGASLQRQGKYREAIKYHS 196 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d------------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~ 196 (245)
...+..+...|..++..|+|++|+..|++++++.+...+ ......++.++|.++..+|+|++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345677888999999999999999999999999543211 22267889999999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 197 ~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++++ +|..+.+++++|.+|..+|++++|..+|++++....
T Consensus 88 ~al~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 88 EVLKR------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhc------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99999 888899999999999999999999999999998754
No 25
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=7.7e-14 Score=102.47 Aligned_cols=103 Identities=22% Similarity=0.198 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
+.....++.+|..++..|++++|+..|++++...|. ...++.++|.++...|+|++|+..|++++++ +
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~ 82 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALM------D 82 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence 345667788999999999999999999999999887 7888999999999999999999999999999 7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|..+.+++++|.+|..+|++++|..+|+++++...
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999998754
No 26
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.56 E-value=1.3e-13 Score=113.46 Aligned_cols=148 Identities=14% Similarity=0.053 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELA 162 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~ 162 (245)
.+.+.+.......+.+.++..|.+++...+. .++....+.++..+|.+|... |++++|+.+|++|+++.
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~----------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTH----------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 3444444444445778888889999988765 356666677888999999996 99999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~-~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
+..++......++.++|.++..+|+|++|+.+|++++++....... .....++.++|.+|..+|++++|..+|+++++.
T Consensus 149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9988887778899999999999999999999999999885433322 244568899999999999999999999998764
No 27
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=9.8e-13 Score=111.44 Aligned_cols=138 Identities=23% Similarity=0.291 Sum_probs=124.1
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025972 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
.+.+.++..+.+++...+. .++....+..+..+|.+|...|++++|..++++++++.+..++......++
T Consensus 201 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 270 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270 (406)
T ss_dssp TBHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHH
Confidence 3566777777777777655 355666777888999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.++|.++...|++++|+.++++++++..+.++.+....++.++|.+|...|++++|..+|+++++..+
T Consensus 271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999998754
No 28
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.53 E-value=5.3e-13 Score=102.72 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS- 209 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~- 209 (245)
...++..+|.++...|++++|..++++++++.+..++......++.++|.++...|++++|+.+++++++++++.++++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4667888999999999999999999999999999999999999999999999999999999999999999999888555
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....++.++|.+|...|++++|..+++++++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999998654
No 29
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=1.1e-12 Score=107.66 Aligned_cols=138 Identities=23% Similarity=0.299 Sum_probs=121.3
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. .++.......+..+|.++...|++++|..++++++++.+..+++.....++.
T Consensus 198 ~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 456666677777766554 2556667778889999999999999999999999999999999998999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
.+|.++..+|++++|+.++++++++....++.+....++..+|.+|...|++++|..+++++++..++
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888888999999999999999999999999999987653
No 30
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=2.2e-12 Score=109.28 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=122.1
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 177 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~ 177 (245)
.+.++..+.+++..... .++....+..+..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus 163 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66666677777666554 35666778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|.++...|++++|+.++++++++....++.+....++.++|.+|...|++++|..+|+++++...
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888899999999999999999999999999998754
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.5e-13 Score=108.33 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025972 90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 169 (245)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 169 (245)
.......+.+.++..|.+++...|. ...++..+|.++...|++++|+..|++++++.|+
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----- 71 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQ----------------DPEALYWLARTQLKLGLVNPALENGKTLVARTPR----- 71 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSS----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 3333444566677777777776654 2346777888999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 170 EEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~-----------g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
...++.++|.++..+ |++++|+..|++++++ +|..+.++.++|.+|...|++++|+..|+++
T Consensus 72 -~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 72 -YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NPRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp -CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 677788888888888 8888888888888887 7777778888888888888888888888888
Q ss_pred HHH
Q 025972 239 ISR 241 (245)
Q Consensus 239 l~~ 241 (245)
++.
T Consensus 145 l~~ 147 (217)
T 2pl2_A 145 LAL 147 (217)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 32
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.2e-12 Score=111.63 Aligned_cols=137 Identities=22% Similarity=0.300 Sum_probs=121.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ..+.......+..+|.+|...|++++|+.++++++++.+..++......++.
T Consensus 238 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIARE----------FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666666666666554 2455566778889999999999999999999999999999999988999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+|.++..+|++++|+.++++++++..+.++.+....++.++|.+|..+|++++|..+|+++++..+
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888899999999999999999999999999998764
No 33
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.5e-12 Score=109.71 Aligned_cols=136 Identities=17% Similarity=0.249 Sum_probs=120.6
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 177 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~ 177 (245)
.+.++..+.+++...+. ..+.......+..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus 199 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRD----------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268 (411)
T ss_dssp HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 56666666666665543 25556677788899999999999999999999999999998888888899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|.++..+|++++|+.++++++++..+.++......++.++|.+|...|++++|..+++++++..+
T Consensus 269 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888899999999999999999999999999998754
No 34
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=1.1e-13 Score=108.29 Aligned_cols=147 Identities=13% Similarity=0.130 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+..++.......+.+.++..|.+++...|........................+|.+|...|++++|+..|++++++.|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34444555555556666677777776655431000000000000011111223389999999999999999999999998
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-------------------
Q 025972 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE------------------- 224 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~------------------- 224 (245)
+ ...++.++|.++...|++++|+..|++++++ +|..+.+++++|.+|..
T Consensus 86 ~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T 3urz_A 86 N------NVDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153 (208)
T ss_dssp T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 8 7889999999999999999999999999998 67666777777766543
Q ss_pred ----------------cCCHHHHHHHHHHHHHHh
Q 025972 225 ----------------LGDLERAARFYDKYISRL 242 (245)
Q Consensus 225 ----------------~g~~~~A~~~y~~al~~~ 242 (245)
.|++++|+.+|+++++..
T Consensus 154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788888888887654
No 35
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=3.8e-12 Score=104.45 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=120.3
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 177 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~ 177 (245)
.+.++..+.+++..... .++.......+..+|.++...|++++|..++++++++.+..+++.....++.+
T Consensus 159 ~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 55666666666665443 24566677788899999999999999999999999999999998889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|.++...|++++|+.++++++++..+.++.+....++.++|.+|...|++++|..+++++++..+
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888899999999999999999999999999998754
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=2e-12 Score=103.85 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+...+.......+.+.++..+.+++...... ...+.+....++..+|.+|...|++++|+.++++++++.+.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3333334444446677777777777665320 00334556778889999999999999999999999999866
Q ss_pred C--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 165 V--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 165 ~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
. .+......++.++|.++...|++++|+.++++++++.++. ++.+....++.++|.+|...|++++|..+++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 3345578899999999999999999999999999998775 44677889999999999999999999999999998
Q ss_pred Hhh
Q 025972 241 RLE 243 (245)
Q Consensus 241 ~~~ 243 (245)
...
T Consensus 198 ~~~ 200 (283)
T 3edt_B 198 RAH 200 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=5.6e-13 Score=101.51 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
......|..+...++++.|...+.+++++.+. ...++..+|.++..+|++++|+..|++++++ +|..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------~p~~~ 141 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFI 141 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh------cchhh
Confidence 35666788999999999999999999988777 6788999999999999999999999999999 88889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.++.++|.+|..+|++++|.++|+++++.-+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999998653
No 38
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.1e-13 Score=104.49 Aligned_cols=105 Identities=16% Similarity=0.027 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------ 206 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~------ 206 (245)
..+..+|.+|...|++++|+.+|++++++.+. ...++.++|.++..+|++++|+.+|+++++......
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 111 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 47888999999999999999999999998876 678899999999999999999999999998754433
Q ss_pred ----CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 207 ----EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 207 ----d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+....+++++|.+|...|++++|..+|+++++...
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 4566779999999999999999999999999987643
No 39
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.49 E-value=6.1e-13 Score=96.19 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+..+|..++..|++++|+..|++++++.+. ...++.++|.++..+|++++|+.++++++++ .|..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------Cchh
Confidence 457788899999999999999999999999887 6789999999999999999999999999998 7778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+++++|.+|...|++++|..+|+++++...
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 89999999999999999999999999998764
No 40
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=4.6e-13 Score=105.58 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+.......+.+.++..|.+++...+. .+ ...++.+|.++...|++++|+.+|++++++.|
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-----------QD----SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-----------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----------CC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence 4445555555566778888888888887651 11 13566689999999999999999999999888
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 025972 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-------EAYGAIADCYTELGDLERAARFYD 236 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~-------~a~~~la~~y~~~g~~~~A~~~y~ 236 (245)
. ...++.++|.++..+|++++|+..+++++++ .|... .++.++|.++...|++++|+++|+
T Consensus 74 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 74 N------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp S------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 7 8889999999999999999999999999998 45444 679999999999999999999999
Q ss_pred HHHHH
Q 025972 237 KYISR 241 (245)
Q Consensus 237 ~al~~ 241 (245)
++++.
T Consensus 142 ~al~~ 146 (228)
T 4i17_A 142 HATDV 146 (228)
T ss_dssp HHTTS
T ss_pred HHHhc
Confidence 99875
No 41
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.48 E-value=2.2e-13 Score=97.52 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
..+..|..+...|++++|+..++++++..|+ ...++..+|.++...|++++|+..|++++++ +|....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Confidence 3567899999999999999999999999988 7889999999999999999999999999999 888889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.++|.+|...|++++|...|+++++...
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999987643
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=4e-13 Score=105.83 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHH
Q 025972 94 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-----------QDLEKAFTEFKAALELA 162 (245)
Q Consensus 94 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~l~ 162 (245)
...+.+.++..+.+++...|. ...++..+|.++... |++++|+..+++++++.
T Consensus 51 ~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 51 KLGLVNPALENGKTLVARTPR----------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 334566777777777776654 234667788999988 99999999999999988
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
|+ ...++.++|.++..+|++++|+..|++++++ + ..+.++.++|.+|...|++++|...|+++++..
T Consensus 115 P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 115 PR------YAPLHLQRGLVYALLGERDKAEASLKQALAL------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87 6788889999999999999999999999888 4 557788899999999999999999999998764
Q ss_pred h
Q 025972 243 E 243 (245)
Q Consensus 243 ~ 243 (245)
.
T Consensus 182 P 182 (217)
T 2pl2_A 182 P 182 (217)
T ss_dssp T
T ss_pred C
Confidence 3
No 43
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=3e-13 Score=124.54 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+.+.+..+....+.+.++..|++++...+. ...++.++|.++..+|++++|++.|++|+++.++
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRISPT----------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444445555778888889999887664 2457888999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+++++|.++..+|++++|+..|++++++ +|....++.++|.+|..+|++++|.+.|+++++...
T Consensus 110 ------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 110 ------FADAHSNLASIHKDSGNIPEAIASYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 7899999999999999999999999999999 888899999999999999999999999999998754
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=1.8e-12 Score=104.15 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025972 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
+.+....++..+|.+|...|++++|+.++++++++.... ++......++.++|.++...|++++|+.++++++++.++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 335567788899999999999999999999999998776 666778899999999999999999999999999999887
Q ss_pred c--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 205 E--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 205 ~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
. .+++....++.++|.+|...|++++|..+++++++..
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6 4457889999999999999999999999999999874
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.3e-12 Score=104.25 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=114.4
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKA 174 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a 174 (245)
+.+.++..+.+++...... ...+......++..+|.+|...|++++|+.++++++++.+.. .+......+
T Consensus 42 ~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 42 RYEVAVPLCKQALEDLEKT--------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4445555555555543320 001345567788889999999999999999999999998776 666778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+.++|.++...|++++|+.++++++++.++. ++.+....++.++|.+|...|++++|..+++++++..
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876 6678889999999999999999999999999999874
No 46
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.45 E-value=9.5e-13 Score=94.93 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025972 80 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 159 (245)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 159 (245)
...+...+++.......+.+.++..|.+++...|. ....+.++|.+|..+|++++|+..|++++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------------NAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 44456777788888888999999999999987764 24477889999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025972 160 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 222 (245)
Q Consensus 160 ~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y 222 (245)
++.++ ...++.++|.++..+|++++|+..|++++++ +|....++.+++.++
T Consensus 75 ~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 75 RLDSK------FIKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHC
T ss_pred Hhhhh------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHHHHhc
Confidence 99888 7889999999999999999999999999999 888899999998763
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=7.9e-12 Score=101.98 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=115.4
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKA 174 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a 174 (245)
+.+.++..+.+++...... ...+.......+..+|.+|...|++++|+.++++++++.... ++......+
T Consensus 84 ~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4566666666666654320 013345567788899999999999999999999999998765 566668899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+.++|.++...|++++|+.++++++++.++. ++.+....++.++|.+|...|++++|..+++++++..
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876 5577888999999999999999999999999999864
No 48
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.6e-12 Score=100.46 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------LGASLQRQGKYREAIKYHS 196 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~----------------lg~~~~~~g~~~~Ai~~~~ 196 (245)
...+..|..+...|++++|+..|++++++.|+ ...++.. +|.++...|++++|+..|+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35677899999999999999999999999988 7777888 9999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 197 ~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++++ +|....++.++|.+|...|++++|..+|+++++.-+
T Consensus 79 ~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 79 ELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999 888899999999999999999999999999998654
No 49
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=3.7e-12 Score=90.39 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025972 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
...+.....+..+|..+...|++++|+..++++++..+. ...++..+|.++...|++++|+.+++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 345567778889999999999999999999999998776 5778999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.|....++.++|.+|...|++++|..+|+++++...
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 666788999999999999999999999999998754
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3.2e-12 Score=97.25 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025972 87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK 166 (245)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 166 (245)
+.+......++.+.++..|.+++...|. ...++..+|.+|...|++++|+..+++++...++
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-- 71 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKADPN----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-- 71 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--
Confidence 3344445556788888889999887664 2447778899999999999999999999988777
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++..+|.++...+++++|+..+.+++++ .|....++..+|.+|..+|++++|+++|+++++.-+
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 72 ----SAEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 6788899999999999999999999999998 788888999999999999999999999999998653
No 51
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.43 E-value=1.4e-13 Score=102.22 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=85.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025972 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
+|.++...|++++|+..+++++...++ ...+++++|.+|...|+|++|+++|++++++ +|..+.++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~p~~~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINV------QERDPKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 588888899999999999999988887 8888999999999999999999999999999 8889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 218 IADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 218 la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|.+|...|++++|..+|+++++.-.
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p 96 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNP 96 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 99999999999999999999998754
No 52
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.43 E-value=1.9e-12 Score=92.60 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
..+..|..++..|++++|+..|+++++..|+ ......++..+|.++...|+|++|+.+|+++++. ..+.+..+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHH
Confidence 3567899999999999999999999987765 2223478899999999999999999999999988 122223388
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++++|.+|..+|++++|..+|+++++...
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998764
No 53
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=2.5e-12 Score=89.70 Aligned_cols=100 Identities=16% Similarity=0.248 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+...|..+...|++++|+..++++++..+. ...++.++|.++...|++++|+.+++++++. .|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------Cccc
Confidence 456778899999999999999999999998776 5778999999999999999999999999998 6777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|...|++++|..+++++++...
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999999987643
No 54
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.42 E-value=4.4e-12 Score=94.27 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
...+..+..+|..++..|++++|+..|+++++..+. ...++.++|.++...|++++|+.+++++++. .
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~ 77 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------D 77 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence 345667888899999999999999999999998776 5778899999999999999999999999988 6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
|....++.++|.+|...|++++|..+|+++++...
T Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 77788999999999999999999999999988654
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=1.9e-12 Score=102.02 Aligned_cols=131 Identities=7% Similarity=0.035 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh-HH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP-IE 170 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~-~~ 170 (245)
.....+.+.++..+.+++...|. ...++..+|.+|..+|++++|+..+++++++.|+.... ..
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 115 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIKKNYN----------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL 115 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCS----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHHhCcc----------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 33334566777777777765543 35577788999999999999999999999988762211 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHcCCH--------------------
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDL-------------------- 228 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--~~~a~~~la~~y~~~g~~-------------------- 228 (245)
...++.++|.++...|++++|+..|++++++ +|. .+.++.++|.+|...|+.
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDV------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK 189 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhc------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3467999999999999999999999999988 888 889999999999999998
Q ss_pred -------HHHHHHHHHHHHHhhc
Q 025972 229 -------ERAARFYDKYISRLES 244 (245)
Q Consensus 229 -------~~A~~~y~~al~~~~~ 244 (245)
++|..+|+++++..++
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Confidence 8999999999887543
No 56
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.42 E-value=4.1e-12 Score=90.25 Aligned_cols=106 Identities=18% Similarity=0.363 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcc
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYS 209 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d~~ 209 (245)
.+..++.+|..+...|++++|+.+++++++..+. ...++.++|.++...|++++|+.+++++++..... .+.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3456778899999999999999999999998776 57789999999999999999999999999996653 2333
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+++++|.+|...|++++|..+|+++++..
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 347899999999999999999999999999864
No 57
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.42 E-value=1.1e-12 Score=110.30 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
.+..+..+..+|..++..|++++|+..|++++++.+...+ ......++.++|.++..+|+|++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556778889999999999999999999999999887431 1223688999999999999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++ +|....+++++|.+|..+|++++|..+|+++++...
T Consensus 223 l~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 223 LEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 999 788899999999999999999999999999998653
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=4.4e-12 Score=101.90 Aligned_cols=122 Identities=14% Similarity=0.023 Sum_probs=103.3
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 177 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~ 177 (245)
.+.++..+.+++...+ .+++.....+..+|.++...|++++|+..|++++++.+. ...++.+
T Consensus 21 ~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~ 82 (275)
T 1xnf_A 21 QEVILARMEQILASRA------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNY 82 (275)
T ss_dssp HHHHHHHHHHHHTSSC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHH
T ss_pred HHHHHHHHHHHHhccc------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHH
Confidence 4445555666665432 234556778889999999999999999999999998776 6778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|.++...|++++|+.+|++++++ .|....++.++|.+|...|++++|..+|+++++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998 677788999999999999999999999999998653
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=93.59 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
+.....+..+|..+...|++++|+..++++++..+. ...++.++|.++...|++++|+.+++++++. .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~ 80 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQL------E 80 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH------C
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------C
Confidence 335667888899999999999999999999988766 5788999999999999999999999999998 6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+....++.++|.+|...|++++|..+++++++...
T Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 77788999999999999999999999999998643
No 60
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.40 E-value=4e-12 Score=98.25 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~----------~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
....+..+...|..++..|+|++|+..|++++++.+...+. .....++.++|.++...|+|++|+.++++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44567778889999999999999999999999987664321 11247899999999999999999999999
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++++ .|....+++++|.+|..+|++++|..+|+++++...
T Consensus 114 al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 114 VLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 9998 777889999999999999999999999999998753
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2e-11 Score=96.93 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--------------------CCChHHHHHHHHHHHHHHHHcCCHH
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN--------------------VKDPIEEKKAARGLGASLQRQGKYR 189 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--------------------~~d~~~~~~a~~~lg~~~~~~g~~~ 189 (245)
.....+..+|.++...|++++|+.++++++++.+. +........++..+|.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 33556666666666666666666666666663221 1134444555666666666666666
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 190 EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 190 ~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+|+..++++++. .|....++.++|.+|...|++++|..+++++++..
T Consensus 157 ~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 157 NAVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 666666666665 44455566666666666666666666666666543
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=8.5e-13 Score=113.00 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 134 SRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
++.++|.++..+|+ +++|+..|++++++.++ ...+++++|.++..+|++++|+..|++++++ +|...
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l------dP~~~ 200 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNY 200 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CccCH
Confidence 45555666666664 66666666666666555 5555666666666666666666666666665 55555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+++++|.++..+|++++|+.+|+++++.
T Consensus 201 ~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 66666666666666666666666666554
No 63
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=1e-12 Score=93.08 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=77.1
Q ss_pred HCCCHHHHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025972 144 RNQDLEKAFTEFKAALEL---AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 220 (245)
Q Consensus 144 ~~g~~~~A~~~~~~al~l---~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~ 220 (245)
.+|++++|+.+|++++++ .+. ...++.++|.++..+|+|++|+.+|++++++ .|..+.++.++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHH
Confidence 358999999999999998 566 8899999999999999999999999999999 7888899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhh
Q 025972 221 CYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 221 ~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|..+|++++|..+++++++...
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999998754
No 64
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=8e-12 Score=105.02 Aligned_cols=150 Identities=20% Similarity=0.215 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
....+...+.......+.+.++..|.+++...+....... ..........+.+++++|.+|..+|++++|+.+|+++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345566666666667889999999999998775211110 000111233467888999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 025972 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYI 239 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A-~~~y~~al 239 (245)
+.+. ...+++++|.++..+|++++|+.+|++++++ .|....++.++|.++..+|++++| ...|++++
T Consensus 225 ~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 7889999999999999999999999999999 788889999999999999999999 66888887
Q ss_pred HHhh
Q 025972 240 SRLE 243 (245)
Q Consensus 240 ~~~~ 243 (245)
+.+.
T Consensus 293 ~~~~ 296 (336)
T 1p5q_A 293 ERLA 296 (336)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
No 65
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=7.1e-11 Score=99.68 Aligned_cols=136 Identities=11% Similarity=-0.033 Sum_probs=104.9
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ++....+.++..+|.++...|++++|...+++++++.+..++......++.
T Consensus 29 ~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp CHHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-----------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344445555555554432 333445566777888888888888888888888888888888877788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~--~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++|.++..+|++++|+.++++++++.++.++. +....++.++|.+|...|++++|..+++++++...
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888876654 56777888888888888888888888888887653
No 66
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.37 E-value=2.9e-12 Score=97.08 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHcCCcc
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS-LQRQGKY--REAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~-~~~~g~~--~~Ai~~~~~al~~~~~~~d~~ 209 (245)
..+..+|.+|...|++++|+.+|++++++.+. ...++.++|.+ +...|++ ++|+..++++++. .|
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p 112 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALAL------DS 112 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CC
Confidence 46778899999999999999999999999887 57788999999 8899999 9999999999998 77
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....++.++|.+|...|++++|..+|+++++...
T Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7788999999999999999999999999998654
No 67
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=3e-12 Score=112.11 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
....+..+..+|..++..|+|++|+..|++|+++.+...+ ......++.++|.++..+|+|++|+.+|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456778889999999999999999999999999887431 2223688999999999999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+++ +|....+++++|.+|..+|++++|..+|+++++..
T Consensus 344 l~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 344 LGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred Hhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999 78889999999999999999999999999998764
No 68
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.8e-12 Score=91.76 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+..++..|..+...|++++|+..|+++++..++ ......++.++|.++...|++++|+.+++++++. .|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------DGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------Ccc
Confidence 4567788899999999999999999999986543 3334788999999999999999999999999998 666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+++++|.+|...|++++|..+|+++++...
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 688999999999999999999999999998654
No 69
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.36 E-value=1.4e-11 Score=86.65 Aligned_cols=100 Identities=27% Similarity=0.466 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+..+|..+...|++++|+..++++++..+. ...++..+|.++...|++++|+.+++++++. .+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCcc
Confidence 456778899999999999999999999988665 5678899999999999999999999999987 5666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|...|++++|..+++++++...
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999988643
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=9.2e-12 Score=100.24 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025972 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+.+...+.......+.+.++..|.+.+...|. .+ ....+++.+|.+|+..|++++|+..|+++++..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-----------HE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-----------ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------Cc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 34555556666666788888888888887664 22 124577888999999999999999999999987
Q ss_pred HhCCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCcchHHHHH--------------HHHHH
Q 025972 163 QNVKDPIEEKKAARGLGASLQR--------QGKYREAIKYHSMVLQISEREGEYSGSTEAY--------------GAIAD 220 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~--------~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~--------------~~la~ 220 (245)
|+.. ....+++.+|.++.. +|++++|+..|+++++... +.+....+. +++|.
T Consensus 83 p~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 83 QIDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP---NHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp TTCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc---CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 256789999999999 9999999999999998832 233333444 88999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhh
Q 025972 221 CYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 221 ~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|...|++++|+..|+++++...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999998754
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=3.2e-11 Score=90.66 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
..+..+|.++...|++++|..+++++++..+. ...++..+|.++...|++++|+.+++++++. .+...
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 144 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALDNLGRFDEAIDSFKIALGL------RPNEG 144 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------Cccch
Confidence 35667788888888899988888888887665 5667888888999999999999999998887 56667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.++..+|.+|...|++++|..+++++++...
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7888899999999999999999998887654
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.9e-11 Score=97.07 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
.....+..+|.++...|++++|+..++++++..+. ...++.++|.++...|++++|+.+++++++. .|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~ 204 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEK------DP 204 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CH
Confidence 35567788999999999999999999999998876 5788999999999999999999999999998 77
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....++..+|.+|...|++++|..+|+++++..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 778899999999999999999999999999876
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=1.8e-11 Score=90.88 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+.......+.+.++..|.+++...+. ....+..+|.++...|++++|+..+++++++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4444444455555667777778877776543 144677889999999999999999999999887
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY--GAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~--~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
. ...++.++|.++..+|++++|+.++++++++ .|....++ ..++..+...|++++|...+.++...
T Consensus 79 ~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 K------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 6 6788999999999999999999999999988 55555555 44555588999999999999998876
Q ss_pred hh
Q 025972 242 LE 243 (245)
Q Consensus 242 ~~ 243 (245)
++
T Consensus 147 ~~ 148 (166)
T 1a17_A 147 VD 148 (166)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 74
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.35 E-value=4.6e-11 Score=105.26 Aligned_cols=143 Identities=10% Similarity=-0.063 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPI 169 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~ 169 (245)
...+++.+.++..+.+++...... .-.+.+..+.++.++|.+|..+|+|++|..++++++++.... .++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~--------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPV--------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTT--------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 333345566666666666654331 124566788899999999999999999999999999998864 4666
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+..+++||.+|..+|+|++|+..|++|+++.+.. .+.|.......+++.++.+++.+++|...|.++.+.+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999874 5678899999999999999999999999999998755
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.5e-11 Score=91.26 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025972 89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 168 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 168 (245)
+.......+.+.++..+.+++...+. ....+..+|.++...|++++|..+++++++..+.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---- 74 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAF----------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD---- 74 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Confidence 33344445667777888888876543 1346778899999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++..+|.++...|++++|+.+++++++. .|....++..+|.+|...|++++|..+++++++...
T Consensus 75 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 75 --NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 5778899999999999999999999999988 666778999999999999999999999999987643
No 76
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=2.8e-11 Score=85.95 Aligned_cols=98 Identities=28% Similarity=0.475 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+..+|.++...|++++|...++++++..+. ...++..+|.++...|++++|+.+++++++. .+....
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 104 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAE 104 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChH
Confidence 5667899999999999999999999987665 5667889999999999999999999999987 566678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++..+|.+|...|++++|..+++++++...
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 899999999999999999999999987654
No 77
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=1.8e-12 Score=89.71 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--H
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--S 211 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--~ 211 (245)
.+..+|.++...|++++|+..+++++++.+. ...++.++|.++...|++++|+.+++++++. .+. .
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~ 75 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINV------IEDEYN 75 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------SCCTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------Ccccch
Confidence 4556799999999999999999999998766 5678899999999999999999999999988 566 7
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTEL-GDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~-g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|... |++++|.++++++++...
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 88999999999999 999999999999987643
No 78
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.34 E-value=1.9e-11 Score=104.17 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
...+..+..+|..++..|++++|+..|++++++.+... .......++.++|.++..+|+|++|+.+++++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34566778899999999999999999999999655421 23336788999999999999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+++ +|..+.+++++|.+|..+|++++|..+|+++++...
T Consensus 300 l~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 300 LEI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHh------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 998 788899999999999999999999999999998754
No 79
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.31 E-value=1.1e-11 Score=101.64 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+...|..++..|++++|+..|+++++..+. ...++.++|.++..+|++++|+..+++++++ +|..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence 346778899999999999999999999999887 6788999999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+++++|.+|..+|++++|..+|+++++...
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 89999999999999999999999999998754
No 80
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.31 E-value=7.8e-11 Score=103.78 Aligned_cols=110 Identities=13% Similarity=-0.012 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcc
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYS 209 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~ 209 (245)
..+..+..+..+|+|++|...+++++++.... .+......+++++|.+|..+|+|++|+.++++++++.++. .+.|
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 34455667888999999999999999998764 3566688999999999999999999999999999999874 5678
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..+..++|+|.+|..+|++++|..+|++|+++.+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999764
No 81
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.30 E-value=2.3e-11 Score=95.83 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=90.3
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025972 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
.+.+.++..+.+++...+. ....+..+|.++...|++++|+..++++++..+. ...++
T Consensus 71 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~ 128 (243)
T 2q7f_A 71 NELERALAFYDKALELDSS----------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------NGDLF 128 (243)
T ss_dssp TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------SHHHH
T ss_pred CCHHHHHHHHHHHHHcCCc----------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHH
Confidence 3556666666666655432 1345667788888888888888888888887665 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..+|.++...|++++|+.+++++++. .+....++..+|.+|...|++++|..+++++++..
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAVEL------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888877 56666788888888888888888888888887764
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.3e-10 Score=98.00 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=113.7
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh--HHHHH
Q 025972 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKK 173 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~--~~~~~ 173 (245)
.+.+.+...+.+++...+. .++....+.+...+|.++...|++++|..++++++++.+..++. .....
T Consensus 67 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 3455566667777776654 24555667778899999999999999999999999999987765 55777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++.++|.++...|++++|..++++++++..+.++.. ...++.++|.++...|++++|..++++++...
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999977655433 56789999999999999999999999998764
No 83
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.30 E-value=3e-11 Score=101.49 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=103.0
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. . .....+..+|.+|...|++++|+..|++++++.+. ...++.
T Consensus 192 ~~~~A~~~~~~al~~~p~-----------~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 251 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGD-----------M---IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWN 251 (365)
T ss_dssp HHHHHHHHHHHHHHHSCS-----------S---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred hHHHHHHHHHHHHHhCcC-----------c---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 455566666666665442 0 01336778899999999999999999999998877 677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++|.++...|++++|+.+|++++++ .|....++.++|.+|..+|++++|..+|+++++..+
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEI------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999998 777789999999999999999999999999998764
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=5.7e-11 Score=92.23 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=95.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
+.+.++..+.+++...+. ....+..+|.++... |++++|+..++++++ . +.......++
T Consensus 57 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~---~~~~~~~~~~ 116 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPD----------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-D---PTYPTPYIAN 116 (225)
T ss_dssp CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---TTCSCHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---cCCcchHHHH
Confidence 455666666666654432 133667789999999 999999999999887 1 1222256788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.++|.++...|++++|+.+++++++. .|....++..+|.+|...|++++|..+++++++...
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAA------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999888 666678899999999999999999999999987654
No 85
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.29 E-value=6.2e-11 Score=99.29 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH
Q 025972 94 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 173 (245)
...+.+.++..+.+++...+. .+ ....+..+|.++...|++++|+..+++++++.+. ...
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~-----------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~ 252 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPT-----------SI---DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYL 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-----------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred hcccHHHHHHHHHHHHHhCcC-----------cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHH
Confidence 344666777777777766543 11 2446778899999999999999999999998776 577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.++|.++...|++++|+.+|++++++ .|....++.++|.+|...|++++|..+|+++++...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999998 777788999999999999999999999999998764
No 86
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=2.3e-11 Score=106.84 Aligned_cols=123 Identities=7% Similarity=-0.051 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---------QDLEKAFTEFKAALELA 162 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~l~ 162 (245)
+....+.+.++..|.+++...+ . ...+..+|.++... |++++|+..|++++++.
T Consensus 147 ~~~~g~~~~A~~~~~~al~~~p--------------~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTHCK--------------N---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTTCC--------------C---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhhCC--------------C---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 3333456666667777666443 2 25777889999999 99999999999999998
Q ss_pred HhCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHcCCHHHH
Q 025972 163 QNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERA 231 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~--------g~~~~Ai~~~~~al~~~~~~~d~~---~~~~a~~~la~~y~~~g~~~~A 231 (245)
++ ...++.++|.++... |++++|+.+|++++++ +| ..+.+++++|.+|...|++++|
T Consensus 210 p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 210 VL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 87 788999999999999 9999999999999999 77 8899999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 025972 232 ARFYDKYISRLE 243 (245)
Q Consensus 232 ~~~y~~al~~~~ 243 (245)
..+|+++++...
T Consensus 278 ~~~~~~al~l~p 289 (474)
T 4abn_A 278 LEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 999999998653
No 87
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.28 E-value=1.3e-10 Score=100.94 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=93.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHH
Q 025972 139 GKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEA 214 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a 214 (245)
+......|+|++|...+++++++.... .+.......++++|.+|..+|+|++|+.++++++++.++. .+.|..+..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 333445689999999999999998764 3566788999999999999999999999999999999874 568899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++|+|.+|..+|++++|..+|++|+++.+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 88
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=7.5e-11 Score=84.13 Aligned_cols=121 Identities=10% Similarity=0.048 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025972 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+.+.+.+.......+.+.++..|.+++...+. ....+..+|.++...|++++|+..+++++++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 68 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD 68 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555566666666788888889888887664 13577889999999999999999999999998
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025972 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~ 225 (245)
|+ ...++.++|.++..+|++++|+..|++++++..+.++.|....+...++.+...+
T Consensus 69 p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 69 PN------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred CC------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 87 6889999999999999999999999999999655554588888888888776543
No 89
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=4.4e-11 Score=94.23 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=100.8
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ....+..+|.++...|++++|+.+++++++..+. ...++.
T Consensus 106 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~ 163 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGME----------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARF 163 (243)
T ss_dssp CHHHHHHHHHHHHHHTCC----------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHH
Confidence 455666666666665443 1235677899999999999999999999998776 567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+|.++...|++++|+.+++++++. .+....++..+|.+|...|++++|..+|+++++...
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQ------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999988 666778999999999999999999999999998754
No 90
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.27 E-value=2.2e-11 Score=94.00 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025972 78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 157 (245)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 157 (245)
+......+...+.......+.+.++..|.+++...+.....................+.++|.+|...|++++|+.++++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444566666666666678888889999998876642100000000000111246778899999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 025972 158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYD 236 (245)
Q Consensus 158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~-~~y~ 236 (245)
++++.+. ...++.++|.++..+|++++|+.+|++++++ .|....++.+++.++..+++.+++. ..|.
T Consensus 114 al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 181 (198)
T 2fbn_A 114 VLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEARKKDKLTFG 181 (198)
T ss_dssp HHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 6789999999999999999999999999999 7778889999999999999988887 4444
Q ss_pred HHH
Q 025972 237 KYI 239 (245)
Q Consensus 237 ~al 239 (245)
+.+
T Consensus 182 ~~f 184 (198)
T 2fbn_A 182 GMF 184 (198)
T ss_dssp ---
T ss_pred HHh
Confidence 443
No 91
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.26 E-value=8.4e-11 Score=98.77 Aligned_cols=105 Identities=13% Similarity=0.210 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH----------------------------------------H
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE----------------------------------------E 171 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~----------------------------------------~ 171 (245)
..++..+|.+|...|++++|+..+++++++.+...+... .
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 346677788888888888888888888888776444443 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
..++.++|.++...|++++|+.+|+++++. .|..+.++.++|.+|...|++++|..+|+++++..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677777777777777777777777777 66667777777777777777777777777777654
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=8.2e-11 Score=105.34 Aligned_cols=124 Identities=14% Similarity=0.033 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 171 (245)
.....+.+.++..|++++...+. ....+..+|.+|..+|++++|+.+|++++++.++ .
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~ 90 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALHPG----------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------H 90 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------C
Confidence 33344667777778888876553 2446778899999999999999999999999887 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhh
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDLERAARFYDKYISRLE 243 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~---g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.++...|++++|+.+|++++++ .|....++.++|.++..+ |++++|.+.|+++++...
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 788999999999999999999999999998 777788999999999999 999999999999998653
No 93
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.26 E-value=6.9e-12 Score=100.85 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
++..+|.++...|++++|+.+|++++++.+. ...++.++|.++...|++++|+.+++++++. .|....
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~ 143 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPK 143 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHH
Confidence 4455566666666666666666666655554 3445556666666666666666666665554 444455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++.++|......+++++|..+|+++++..
T Consensus 144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 144 VFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55666622223346666666666665543
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.26 E-value=5.1e-11 Score=92.49 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
++..++..|..+...|++++|+..|++++. . ...++.++|.++...|++++|+.+|++++++ .|.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---P------HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKH 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Ccc
Confidence 455678899999999999999999999851 1 3568999999999999999999999999998 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+++++|.+|...|++++|..+|+++++...
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999998543
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=2.7e-11 Score=108.42 Aligned_cols=100 Identities=17% Similarity=0.086 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+..+|.++...|++++|+.+|++++++.++ ...++.++|.++..+|++++|+.+|++++++ .|..
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~ 90 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDA------APEH 90 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC
Confidence 447778899999999999999999999998877 6888999999999999999999999999998 7778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|...|++++|.++|+++++...
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999998653
No 96
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.25 E-value=9.2e-11 Score=93.21 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=91.2
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHhCCChHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE--LAQNVKDPIEEKKA 174 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~d~~~~~~a 174 (245)
+.+.++..+.+++...+. ....+..+|.++...|++++|+.+++++++ ..+. ...+
T Consensus 86 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 143 (252)
T 2ho1_A 86 EPKLADEEYRKALASDSR----------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------RSRV 143 (252)
T ss_dssp CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------HHHH
T ss_pred CHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------cHHH
Confidence 455666666666654432 133566778889999999999999998877 3232 6677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..+|.++...|++++|+.+++++++. .+....++..+|.+|...|++++|..+++++++..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRL------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999998887 56667788889999999999999999998887653
No 97
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.24 E-value=6.3e-11 Score=97.41 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~---~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+..+|.++...|++++|+.+++++++..+..++. .....++.++|.++...|++++|+.++++++++ .|.
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~ 268 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL------IPQ 268 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------Ccc
Confidence 34444555555555555555555555554443333 222345555555555555555555555555554 344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
...++.++|.+|...|++++|..+|+++++
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 444555555555555555555555555544
No 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.24 E-value=3.5e-11 Score=98.95 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
....+.......+.+.++..+.+++...+. . ...+..+|.++...|++++|+..++++++..+.
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 191 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKG-----------C-----HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-----------C-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccc-----------c-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 344444444555788888899999887664 1 224566899999999999999999999998887
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY---SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~---~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...++..+|.++...|++++|+.+++++++.....++. +....++.++|.+|...|++++|..+|+++++.
T Consensus 192 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 192 ------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999887654 445679999999999999999999999999986
Q ss_pred hh
Q 025972 242 LE 243 (245)
Q Consensus 242 ~~ 243 (245)
..
T Consensus 266 ~~ 267 (330)
T 3hym_B 266 IP 267 (330)
T ss_dssp ST
T ss_pred Cc
Confidence 54
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=7.5e-12 Score=114.77 Aligned_cols=122 Identities=16% Similarity=0.061 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025972 91 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
......+.+.++..|.+++...+. ...+++.+|.++...|++++|+..|++++++.++
T Consensus 442 ~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------ 499 (681)
T 2pzi_A 442 ALLDLGDVAKATRKLDDLAERVGW----------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------ 499 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------
T ss_pred HHHhcCCHHHHHHHHHHHhccCcc----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 333344567777777777776554 2447788899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...++.++|.++..+|++++ +.+|++++++ +|....+++++|.+|..+|++++|..+|+++++.
T Consensus 500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 500 ELAPKLALAATAELAGNTDE-HKFYQTVWST------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 68889999999999999999 9999999999 8888899999999999999999999999998764
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=2e-10 Score=92.33 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHH
Q 025972 86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR--------NQDLEKAFTEFKA 157 (245)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~ 157 (245)
...+.......+.+.++..|.+.+...|. ++. ...+++.+|.++.. .|++++|+..|++
T Consensus 56 ~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 56 FYLARAYYQNKEYLLAASEYERFIQIYQI-----------DPR--VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------CTT--HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHCCC-----------Cch--hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 33344444445678888888888887764 222 34567788999999 9999999999999
Q ss_pred HHHHHHhCCChHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc-
Q 025972 158 ALELAQNVKDPIEE-----------KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL- 225 (245)
Q Consensus 158 al~l~~~~~d~~~~-----------~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~- 225 (245)
+++..|+....... ...+..+|.++...|+|++|+..|+++++. ..+.+....+++.+|.+|..+
T Consensus 123 ~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 123 FIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA---YPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHhc
Confidence 99988764332211 111288999999999999999999999987 223334788999999999977
Q ss_pred ---------CCHHHHHHHHHHHHHHhhc
Q 025972 226 ---------GDLERAARFYDKYISRLES 244 (245)
Q Consensus 226 ---------g~~~~A~~~y~~al~~~~~ 244 (245)
|++++|...|+++++...+
T Consensus 200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 200 EQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9999999999999987643
No 101
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=6.8e-11 Score=103.47 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025972 80 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 159 (245)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 159 (245)
.....+.+.+.......+.+.++..|.+++...+....... +...........+++++|.+|..+|+|++|+.+|++++
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34446666677777777889999999999988765211000 00001123346788899999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 025972 160 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR-FYDKY 238 (245)
Q Consensus 160 ~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~-~y~~a 238 (245)
++.++ ...+++++|.++..+|+|++|+.+|++++++ +|....++.+++.++..+|++++|.. .|.+.
T Consensus 345 ~~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 345 GLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 7889999999999999999999999999998 78888999999999999999998864 44544
Q ss_pred HH
Q 025972 239 IS 240 (245)
Q Consensus 239 l~ 240 (245)
+.
T Consensus 413 f~ 414 (457)
T 1kt0_A 413 FK 414 (457)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 102
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.23 E-value=4.7e-11 Score=102.14 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcC
Q 025972 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREG 206 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~~~~~~ 206 (245)
.+....++..+|.++...|++++|+..|++++++.|+ ...+++++|.++..+|+ +++|+..|++++++
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----
Confidence 3456667888899999999999999999999999998 88999999999999997 99999999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+|....+|+++|.++..+|++++|+.+|+++++.-.
T Consensus 162 -~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 162 -QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 888999999999999999999999999999998643
No 103
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.23 E-value=1.9e-11 Score=102.86 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025972 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----------PIEEKKAARGLGASLQRQGKYREAIKYHS 196 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-----------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~ 196 (245)
....+..+...|..++..|+|++|+..|++++++.+.... ......++.++|.++..+|+|++|+.+|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456778889999999999999999999999988665110 00011489999999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 197 ~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+++++ +|....+++++|.+|..+|++++|..+|+++++..
T Consensus 255 ~al~~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 255 IVLTE------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99998 78888999999999999999999999999998654
No 104
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.23 E-value=2e-10 Score=94.26 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=101.1
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ....+..+|.++...|++++|+..++++++..+. ...++.
T Consensus 153 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~ 210 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPN----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWN 210 (327)
T ss_dssp HHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred cHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHH
Confidence 445555566666654432 2346778899999999999999999999998776 577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+|.++...|++++|+.+++++++. .|....++.++|.+|...|++++|..+++++++...
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDI------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998 677788999999999999999999999999998754
No 105
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.5e-10 Score=97.07 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025972 90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 169 (245)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 169 (245)
.-+....+.+.+++.+.+++...+. ..+..........+|.++...|++++|+.++++++...+..++..
T Consensus 63 ~~y~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFIPHSTEYMMQ----------FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHTHHHHHT----------SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH----------ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 3333444667777777777776654 233344555666789999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
....++.++|.++...|+|++|+..+++++.......+.+....++.++|.+|..+|++++|..+|++++....
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999998888999999999999999999999999999999987653
No 106
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.9e-10 Score=96.77 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccCCCcccccc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025972 88 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK 166 (245)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 166 (245)
+.++.....+.+.+++.|.++++..+............ ........+...+|.+|...|++++|.+++.++++..+.++
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 45555555677888888888888776643332222111 11233445677899999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+..........+|.++...|++++|+.++++++....+.++....+.++.++|.+|...|+|++|..++++++...
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 8777778888999999999999999999999999999999989999999999999999999999999999988764
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.5e-10 Score=82.04 Aligned_cols=98 Identities=28% Similarity=0.475 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+++.+|..+...|++++|...++++++..+. ...++..+|.++...|++++|+.+++++++. .+....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------CCCchH
Confidence 4667899999999999999999999987665 4677889999999999999999999999987 566677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
++.++|.++...|++++|..+++++++...
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999987643
No 108
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.6e-12 Score=88.51 Aligned_cols=100 Identities=10% Similarity=0.129 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+..+|..++..|++++|+..|++++++.|. ...++.++|.++..+|++++|+..+++++++....++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 456778899999999999999999999999887 67889999999999999999999999999882222222223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
..++.++|.++..+|+++.|...+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88899999999999988877665543
No 109
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=7.3e-11 Score=100.05 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=49.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025972 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
+..+|.++...|++++|+..|++++++.|. ...++.++|.++...|++++|+..|+++++. .|....+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 307 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADS 307 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcccHHH
Confidence 334455555555555555555555554433 3344555555555555555555555555554 3444455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 215 YGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+.++|.+|...|++++|..+|+++++
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555544
No 110
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.21 E-value=2.1e-10 Score=89.02 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS- 209 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~- 209 (245)
....+..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.+++++++. .|
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~ 179 (225)
T 2vq2_A 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSR------VEV 179 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence 3457778899999999999999999999998776 5778899999999999999999999999987 55
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.....+..++.++...|++++|..+++.+.+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 6677788899999999999999999998876654
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.21 E-value=8.6e-10 Score=79.25 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
...+.+.......+.+.++..|.+++...|. ....+.++|.+|..+|+|++|+..+++++++.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 3445566666677889999999999987664 244778899999999999999999999999998
Q ss_pred hCC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 164 NVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 164 ~~~-d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+.. +....+.++.++|.++..+|++++|+.+|++++..
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 764 45557789999999999999999999999999887
No 112
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=1.2e-10 Score=101.10 Aligned_cols=114 Identities=15% Similarity=0.007 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
..+..+..+|.++..+|++++|+.+|++|+++.+.... ......++.++|.+|..+|++++|+.++++++++.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556778899999999999999999999999876432 223456789999999999999999999999999988764
Q ss_pred C--cchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhh
Q 025972 207 E--YSGSTEAYGAIADCYTEL--GDLERAARFYDKYISRLE 243 (245)
Q Consensus 207 d--~~~~~~a~~~la~~y~~~--g~~~~A~~~y~~al~~~~ 243 (245)
+ .+..+.++.++|.++... +++++|+++|+++++.-+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 3 334677888888887665 579999999999998643
No 113
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.20 E-value=1.1e-11 Score=92.38 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025972 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEAY 215 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~----------~~Ai~~~~~al~~~~~~~d~~~~~~a~ 215 (245)
+.|++|+..+++++++.|+ ...++.++|.++...+++ ++|+..|++||++ +|....++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~A~ 83 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHHHH
Confidence 5789999999999999999 899999999999998875 5999999999999 99999999
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHHhh
Q 025972 216 GAIADCYTELG-----------DLERAARFYDKYISRLE 243 (245)
Q Consensus 216 ~~la~~y~~~g-----------~~~~A~~~y~~al~~~~ 243 (245)
+++|.+|..+| ++++|+++|++|+++-.
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999999885 89999999999998743
No 114
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.20 E-value=2.3e-10 Score=94.84 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+.......+.+.++..|.+++...|. ....+..+|.++...|++++|+..++++++..|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3444445555555677777888888876553 134777889999999999999999999999877
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHH------------HHHHHHcCCH
Q 025972 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAI------------ADCYTELGDL 228 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---~~~~a~~~l------------a~~y~~~g~~ 228 (245)
. ...++..+|.++...|++++|+..|+++++. .| ....++..+ |.++...|++
T Consensus 69 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 69 D------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136 (359)
T ss_dssp T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred C------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 6 5688999999999999999999999999887 66 667777666 7999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 025972 229 ERAARFYDKYISRLE 243 (245)
Q Consensus 229 ~~A~~~y~~al~~~~ 243 (245)
++|...++++++...
T Consensus 137 ~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 137 TAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999987643
No 115
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.20 E-value=6.4e-11 Score=99.19 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=102.7
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ....+..+|.++...|++++|+..|++++++.+. ...++.
T Consensus 232 ~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~ 289 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPN----------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSRY 289 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred CHHHHHHHHHHHHHhCcC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHH
Confidence 455666666666665432 1346778899999999999999999999998776 678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGE-----YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d-----~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
++|.++...|++++|+.+|++++++.....+ .+....++.++|.+|..+|++++|...++++++.+.+
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 9999999999999999999999999654321 1223789999999999999999999999999887753
No 116
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.20 E-value=1.3e-10 Score=86.83 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCC-----hHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 025972 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-----KKEELLSRLKTGKNFLRNQDLEKAFTEF 155 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 155 (245)
....+.+.+.......+.+.++..|.+++...+..... ....++ .+.....+.++|.+|..+|++++|+.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR---EKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---SCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34566777777777778888899999998874321000 000011 3445678889999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHcCCHH
Q 025972 156 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLE 229 (245)
Q Consensus 156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~-~a~~~la~~y~~~g~~~ 229 (245)
++++++.|. ...+++.+|.++..+|++++|+..|++++++ +|... .+...++.+....++.+
T Consensus 87 ~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 87 SEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999887 7889999999999999999999999999999 77766 56777777776655443
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=3.2e-10 Score=89.46 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+.+.+.......+.+.++..|.+.+...|. .+. ...+++.+|.+|+..|++++|+..|+++++..|+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPF-----------GPY--SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------STT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------ChH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 344455555566778888888888876654 221 2346778899999999999999999999998876
Q ss_pred CCChHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHcCCcchHH--------------
Q 025972 165 VKDPIEEKKAARGLGASLQR------------------QGKYREAIKYHSMVLQISEREGEYSGST-------------- 212 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~------------------~g~~~~Ai~~~~~al~~~~~~~d~~~~~-------------- 212 (245)
... ...+++.+|.++.. +|++++|+..|+++++.... .+...
T Consensus 74 ~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 74 HPN---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---SQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp CTT---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---CTTHHHHHHHHHHHHHHHH
T ss_pred CCc---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---ChhHHHHHHHHHHHHHHHH
Confidence 332 34577888888775 67999999999999887332 22111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.....+|.+|...|++++|+..|+++++...
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 2236789999999999999999999998764
No 118
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.19 E-value=1.1e-11 Score=109.02 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
+..+..+|..+...|++++|+..|++|+++.+. ...++.++|.++..+|+|++|+.++++++++ +|..
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence 334455688888899999999999999998877 6888999999999999999999999999988 7778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.+++++|.+|..+|++++|.++|+++++...
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999988643
No 119
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.19 E-value=1.3e-10 Score=98.57 Aligned_cols=97 Identities=23% Similarity=0.198 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
....+|.++...|++++|...|+++++..|+ ...++.++|.++...|++++|+..|++++++ +|....
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 204 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLD 204 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHH
Confidence 4556677888888888888888888777665 5677788888888888888888888888877 677777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
++.++|.++...|++++|...|+++++..
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888888888888888888888887654
No 120
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.19 E-value=1.1e-10 Score=95.80 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-- 210 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-- 210 (245)
..+..+|.++...|++++|+..++++++..+. ...++.++|.++...|++++|+.++++++++.....+..+
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 280 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA 280 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc
Confidence 46778899999999999999999999998776 6778899999999999999999999999998433211111
Q ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 211 ----STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ----~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++.++|.+|...|++++|...++++++.++
T Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 788999999999999999999999999888765
No 121
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.18 E-value=3.9e-10 Score=84.03 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
....+.+.+.......+.+.++..|.+++...|.-... + ..+..+..+.++.++|.++..+|+|++|+..|++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---E-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---S-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---h-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567777888888889999999999999998762110 0 1122234566889999999999999999999999999
Q ss_pred H-------HHhCCChHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025972 161 L-------AQNVKDPIEEKKAA----RGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 161 l-------~~~~~d~~~~~~a~----~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
+ .|+ ...++ +++|.++..+|++++|+..|++++++...
T Consensus 86 l~n~~~e~~pd------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 86 YFNRRGELNQD------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHCCTTST------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCCCc------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9 665 67777 99999999999999999999999999544
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=2.5e-10 Score=80.74 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Q 025972 86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 165 (245)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 165 (245)
...+.......+.+.++..+.+++...+. ....+..+|.++...|++++|+..++++++..+.
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 78 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNPA----------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA- 78 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence 33333333444566666777777765543 1346778899999999999999999999998776
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCH
Q 025972 166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 228 (245)
Q Consensus 166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~ 228 (245)
...++..+|.++...|++++|+.+++++++. .|....++..+|.++..+|++
T Consensus 79 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -----YSKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTTC
T ss_pred -----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHhcC
Confidence 5778999999999999999999999999998 677778999999999998875
No 123
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.18 E-value=3.9e-10 Score=89.53 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
....+..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.+++++++. .+.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~ 207 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMADLLYKEREYVPARQYYDLFAQG------GGQ 207 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcC
Confidence 3456778899999999999999999999998765 5778899999999999999999999999876 566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
...++..++.+|...|++++|..+++++++...+
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6788999999999999999999999999987643
No 124
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.18 E-value=2.2e-10 Score=91.88 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=100.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ....+..+|...+..+++++|+..+++++++.|+ ...++.
T Consensus 123 ~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~ 180 (272)
T 3u4t_A 123 NFPLAIQYMEKQIRPTTT----------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIGYL 180 (272)
T ss_dssp CHHHHHHHHGGGCCSSCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHH
T ss_pred CHHHHHHHHHHHhhcCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHHHH
Confidence 455566666666655332 2346777895555567999999999999998887 578889
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025972 177 GLGASLQRQGK---YREAIKYHSMVLQISEREGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244 (245)
Q Consensus 177 ~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d--~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~ 244 (245)
.+|.++...|+ +++|+..|++++++.+..++ ......++..+|.+|...|++++|.++|+++++..++
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 99999999999 99999999999999765544 2335678999999999999999999999999987653
No 125
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=2.1e-10 Score=76.53 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
....+..+|..+...|++++|+.+|+++++..+. ...++.++|.++...|++++|+.++++++++ .|.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCC
Confidence 4557778899999999999999999999998776 5778899999999999999999999999998 777
Q ss_pred HHHHHHHHHHHHHHcC
Q 025972 211 STEAYGAIADCYTELG 226 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g 226 (245)
...++.++|.++...|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 7889999999988765
No 126
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.16 E-value=7.4e-10 Score=98.84 Aligned_cols=105 Identities=18% Similarity=0.144 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
..+..+|.+|...|++++|+..|+++++..++.+.... ...++..+|.++...|++++|+..++++++. .|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~ 549 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL------STND 549 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SSCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence 35667899999999999999999999998876543332 3678899999999999999999999999888 6767
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++..+|.+|...|++++|.++|+++++...
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999988654
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.16 E-value=2.9e-10 Score=80.93 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+...+.......+.+.++..+.+++...+. ....+..+|.++...|++++|+.++++++++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 333333444444556666777777765543 1346778899999999999999999999998776
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025972 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 227 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~ 227 (245)
...++.++|.++...|++++|+.+++++++. .|....++..++.++..+|+
T Consensus 83 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 ------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHTC
T ss_pred ------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC
Confidence 6788999999999999999999999999998 77778899999999988764
No 128
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.16 E-value=9.7e-10 Score=91.07 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=89.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025972 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
....|..+...|++++|+..++++++..+. ++.....++..+|.++...|++++|+..++++++. .|..+.+
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 308 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHH
Confidence 345699999999999999999999987654 44555677889999999999999999999999998 7777889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 215 YGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.++|.+|...|++++|..+|+++++..+
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998654
No 129
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=2.8e-11 Score=106.33 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---------GKYREAIKYHSMVLQIS 202 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~---------g~~~~Ai~~~~~al~~~ 202 (245)
..++..+|.+|...|++++|+.+|++++++.++ ..++.++|.++... |++++|+..|++++++
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~- 208 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM- 208 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-
Confidence 447788899999999999999999999987654 37899999999999 9999999999999999
Q ss_pred HHcCCcchHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhh
Q 025972 203 EREGEYSGSTEAYGAIADCYTEL--------GDLERAARFYDKYISRLE 243 (245)
Q Consensus 203 ~~~~d~~~~~~a~~~la~~y~~~--------g~~~~A~~~y~~al~~~~ 243 (245)
+|....+++++|.+|... |++++|..+|+++++...
T Consensus 209 -----~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 209 -----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred -----CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 788889999999999999 999999999999998643
No 130
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.15 E-value=6.7e-10 Score=96.36 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=94.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHH
Q 025972 137 KTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST 212 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~ 212 (245)
....-+..+|+|++|...+++++++.... .+.......+.++|.+|..+|+|++|+.++++++++.++. .+.|..+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33445678899999999999999876543 3556688899999999999999999999999999999874 5688999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++++|.+|..+|++++|..+|++|+++.+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 131
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.14 E-value=2.6e-10 Score=97.08 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+.......+.+.++..|.+++...+...............+.....++++|.+|..+|++++|+.++++++++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 45555555555567788888888888754321000000000123455677888999999999999999999999999887
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 025972 164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 234 (245)
Q Consensus 164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~ 234 (245)
. ...+++++|.++..+|++++|+.+|++++++ .|....++..++.++..+++++++...
T Consensus 305 ~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 S------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 7889999999999999999999999999999 777788999999999999998887653
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.13 E-value=6.7e-10 Score=82.56 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025972 78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 157 (245)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 157 (245)
.+...+.+...+.......+.+.++..|.+++...|. ....+..+|.++...|+|++|+..|++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------------NVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3455566677777777777889999999999987764 244778899999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
++++.|+ ...+++++|.++..+|++++|+..|++++++
T Consensus 96 al~l~P~------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 96 AFALGKN------DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHSSS------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998 7789999999999999999999999999998
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=9e-11 Score=107.61 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...++.+|.++..+|++++|+..|++++++.++ ...+++++|.++..+|++++|+..|++++++ +|..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~ 500 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDT------FPGE 500 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTC
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence 346778899999999999999999999999988 7889999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|..+|++++ +.+|+++++.-.
T Consensus 501 ~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P 531 (681)
T 2pzi_A 501 LAPKLALAATAELAGNTDE-HKFYQTVWSTND 531 (681)
T ss_dssp SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence 8999999999999999999 999999998643
No 134
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.11 E-value=1.4e-09 Score=87.10 Aligned_cols=129 Identities=14% Similarity=0.032 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+...+.......+.+.++..+.+++...+. ....+..+|.++...|++++|+.+|++++++.+.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence 333344444445667777778888776553 1346778899999999999999999999998876
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...++.++|.++...|++++|+.++++++++ .|.........+. +...|++++|...+++++...
T Consensus 110 ------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 110 ------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp ------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHS
T ss_pred ------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhcC
Confidence 5688999999999999999999999999988 4544444444443 356699999999998888754
No 135
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=2.9e-10 Score=79.85 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025972 150 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 229 (245)
Q Consensus 150 ~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~ 229 (245)
+|+..|+++++..+. ...++.++|.++...|++++|+.+|++++++ .|....+++++|.+|...|+++
T Consensus 3 ~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHH
Confidence 456666776666554 4566777777777777777777777777776 5656667777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 025972 230 RAARFYDKYISRL 242 (245)
Q Consensus 230 ~A~~~y~~al~~~ 242 (245)
+|..+|+++++..
T Consensus 71 ~A~~~~~~al~~~ 83 (115)
T 2kat_A 71 GARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777654
No 136
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=3.3e-10 Score=85.84 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH--HHHHHHHHHHHHHcC
Q 025972 149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEAYGAIADCYTELG 226 (245)
Q Consensus 149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~--~~a~~~la~~y~~~g 226 (245)
.+|+..++++++..|+ ...++.++|.++...|++++|+..|+++++. +|.. ..++.++|.++..+|
T Consensus 91 ~~a~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 91 SPELKRLEQELAANPD------NFELACELAVQYNQVGRDEEALELLWNILKV------NLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp CHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTTTTTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CcccChHHHHHHHHHHHHHhC
Confidence 3467777777777766 6788999999999999999999999999887 5543 568999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 025972 227 DLERAARFYDKYISRL 242 (245)
Q Consensus 227 ~~~~A~~~y~~al~~~ 242 (245)
+.++|...|++++...
T Consensus 159 ~~~~A~~~y~~al~~~ 174 (176)
T 2r5s_A 159 QGNAIASKYRRQLYSI 174 (176)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999998753
No 137
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=7.7e-10 Score=87.19 Aligned_cols=105 Identities=9% Similarity=-0.052 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
..++..|..++..|++++|+..|+++++..|. ......++..+|.++...|+|++|+..|+++++. ..+.+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~~~~ 78 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNID 78 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCcHH
Confidence 36778899999999999999999999987664 2224578999999999999999999999999987 22344456
Q ss_pred HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHhh
Q 025972 213 EAYGAIADCYTE------------------LGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~~------------------~g~~~~A~~~y~~al~~~~ 243 (245)
.+++.+|.+|.. .|++++|...|+++++...
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 789999999986 5799999999999998654
No 138
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.09 E-value=1.1e-09 Score=94.13 Aligned_cols=134 Identities=20% Similarity=0.193 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025972 82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 161 (245)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l 161 (245)
...+...+.......+.+.++..|.+++...+. ....+..+|.++...|++++|+..++++++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344445455555555677777788887765543 2457778899999999999999999999998
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH---HHH------------HHHHHHHHHcC
Q 025972 162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST---EAY------------GAIADCYTELG 226 (245)
Q Consensus 162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~---~a~------------~~la~~y~~~g 226 (245)
.+. ...++..+|.++..+|++++|+..|+++++. .|... .++ ..+|.+|...|
T Consensus 90 ~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 90 KMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 877 6788999999999999999999999999876 45444 444 44477799999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 025972 227 DLERAARFYDKYISRLE 243 (245)
Q Consensus 227 ~~~~A~~~y~~al~~~~ 243 (245)
++++|..+|+++++...
T Consensus 158 ~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCV 174 (450)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999987643
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.09 E-value=6.4e-10 Score=83.09 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025972 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 162 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 162 (245)
+.+...+.......+.+.++..|.+++...+. ....+..+|.+|...|++++|+.+|++++++.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555556778888888888887654 24477889999999999999999999999998
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025972 163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221 (245)
Q Consensus 163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~ 221 (245)
++ ...++.++|.++..+|++++|+.+|++++++ .|....++.+.+..
T Consensus 76 p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 PK------YSKAWSRLGLARFDMADYKGAKEAYEKGIEA------EGNGGSDAMKRGLE 122 (164)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HSSSCCHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCchHHHHHHHHH
Confidence 87 6889999999999999999999999999999 44444444444433
No 140
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.09 E-value=1.6e-09 Score=96.66 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH-
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS- 211 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~- 211 (245)
..+..+|.+|...|++++|...|+++++..+. ...++..+|.++.+.|++++|+..|+++++...+.+.+|..
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 35667899999999999999999999987665 56778999999999999999999999999998776666664
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|...|++++|.+.|+++++...
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999987643
No 141
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.09 E-value=6.9e-10 Score=97.56 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISE 203 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~----------g~~~~Ai~~~~~al~~~~ 203 (245)
.+..+|.++...|++++|+..|+++++..+...+.......+.++|.++... |++++|+.+|+++++.
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 457 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-- 457 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--
Confidence 5566788888889999999999998888887665555555567788888888 8999999999999888
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.|....++.++|.+|...|++++|.++|+++++...
T Consensus 458 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 458 ----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 677778999999999999999999999999998754
No 142
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.3e-09 Score=94.96 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
...+..+...|..++..|++++|+..|+++++..|+ ..++.++|.++...|++++|+..++++++. .
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~ 69 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL------K 69 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------C
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------C
Confidence 446778889999999999999999999999998753 678999999999999999999999999998 7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
|....++..+|.+|..+|++++|...|+++++..
T Consensus 70 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999998654
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.07 E-value=7.1e-10 Score=80.98 Aligned_cols=101 Identities=10% Similarity=-0.044 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
..+.+...+.......+.+.++..|.+++...|. ....+..+|.++...|++++|+..|+++++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------------DARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344455555555556777888888888876654 234677889999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
+.|+ ...++.++|.++..+|++++|+..|++++++..
T Consensus 81 ~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 81 MDIN------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9887 677899999999999999999999999999844
No 144
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.06 E-value=1.1e-09 Score=96.16 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...+..+|.++...|++++|+..+++++++.+. ...++.++|.++...|++++|+..++++++. .|..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~ 377 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLK------FPTL 377 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence 345677889999999999999999999888776 4567888999999999999999999999888 6666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++.++|.+|...|++++|..+|+++++...
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 77888999999999999999999999887653
No 145
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.06 E-value=1e-09 Score=94.38 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
.....++.+|..+...|++++|+..|+++++..+. ...++..+|.++...|++++|+..|+++++. .|
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p 91 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIQL------KM 91 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 35667788899999999999999999999988776 6888999999999999999999999999998 77
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
....++..+|.+|...|++++|..+|+++++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77899999999999999999999999999864
No 146
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.05 E-value=1.2e-09 Score=89.94 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025972 95 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTG--KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK 172 (245)
Q Consensus 95 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 172 (245)
.++.+.++..+.+++...+. + ....+..| ..+...|++++|+..|+++++..|. ..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~------------~----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~ 200 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDED------------A----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TL 200 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTT------------C----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CH
T ss_pred CCCHHHHHHHHHHHHhhCcC------------c----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cH
Confidence 34566777777777665442 1 11122122 2333458899999999999988766 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhh
Q 025972 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AARFYDKYISRLE 243 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~-A~~~y~~al~~~~ 243 (245)
.+++++|.++..+|++++|+..++++++. +|..+.++.++|.++...|+.++ +..+++++++.-.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999998 88889999999999999999976 5688899887644
No 147
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=6.5e-10 Score=91.15 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA------ 158 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a------ 158 (245)
+...........+.+.++..|++++...|. ...+++.+|.++...|++++|+..++++
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 344444444455667777777777776654 1235566677777777777776655554
Q ss_pred ----------------------------HHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 159 ----------------------------LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 159 ----------------------------l~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
++..|+ ...++.++|.++...|++++|+..|+++++. +|+
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~ 251 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQVGRNEEALELLFGHLRX------DLT 251 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccc
Confidence 333333 4567788888888888888888888888887 555
Q ss_pred H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 211 S--TEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 211 ~--~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
. ..++.++|.+|..+|+.++|...|++++..
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 5 678888888888888888888888888764
No 148
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.04 E-value=1.1e-10 Score=98.09 Aligned_cols=149 Identities=9% Similarity=0.042 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCcccccc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025972 83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 161 (245)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l 161 (245)
..+...+.......+.+.++..|.+++...+............ ........+++++|.+|..+|+|++|+.++++++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444444444466777778888887655411000000000 000011136788999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 025972 162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YTELGDLERAARFYDKYIS 240 (245)
Q Consensus 162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~-y~~~g~~~~A~~~y~~al~ 240 (245)
.++ ...+++++|.++..+|+|++|+.+|++++++ +|....++.+++.+ ....++.+++...|.+++.
T Consensus 260 ~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 260 EEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp CTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 887 7889999999999999999999999999988 77788899999988 4556778889999999887
Q ss_pred Hhh
Q 025972 241 RLE 243 (245)
Q Consensus 241 ~~~ 243 (245)
...
T Consensus 328 ~~p 330 (338)
T 2if4_A 328 GKD 330 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 149
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=6.7e-10 Score=96.91 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
.+..+|.++...|++++|+..++++++..+...+......++.++|.++.. .|++++|+.+++++++. .|.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~ 447 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------DPR 447 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------CTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------Ccc
Confidence 566789999999999999999999999988754433334588999999999 99999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++..+|.+|...|++++|..+|+++++...
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 788999999999999999999999999998654
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=7.6e-10 Score=81.75 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
..+.+...+.......+.+.++..|.+++...|. ....+..+|.++...|++++|+..|+++++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344555555566666778888888888876654 234667889999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025972 161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
+.|+ ...+++++|.++..+|++++|+..|++++++.
T Consensus 84 l~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 84 MDIX------EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9887 67889999999999999999999999999984
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=8.9e-10 Score=95.58 Aligned_cols=137 Identities=9% Similarity=-0.010 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH--H
Q 025972 93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI--E 170 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~--~ 170 (245)
...++.+.+++.|+++++..+... ........+..+.++|.+|..+|++++|..++++++++.+...++. .
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~-------~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEH-------ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHS-------GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 334467788888888887654310 0011223455777899999999999999999999999999865432 2
Q ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHh
Q 025972 171 EKKAARGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT---ELGDLERAARFYDKYISRL 242 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~--g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~---~~g~~~~A~~~y~~al~~~ 242 (245)
.+.++.++|.++... ++|++|+.+|++++++ +|..+.++.++|.++. ..++.++|++.|+++++.-
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 456777888777664 5799999999999999 7877888888888754 5677889999999998764
No 152
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=4.9e-09 Score=84.51 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 132 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~ 203 (245)
..++..+|.+|.. .+++++|+.+|+++++. . ...++.++|.++.. .+++++|+.+|+++++.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-- 143 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--K------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-- 143 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--C------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--
Confidence 3467778888888 88999999888888775 1 46778888988888 88999999999888765
Q ss_pred HcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025972 204 REGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 204 ~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
. ...++.++|.+|.. .+++++|..+|+++++.
T Consensus 144 ----~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 144 ----N--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp ----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ----C--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 2 35678888998888 88999999999888765
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=2.8e-10 Score=100.07 Aligned_cols=112 Identities=20% Similarity=0.231 Sum_probs=91.7
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..|.+++...+. ...++..+|.+|..+|++++|+..+++++++.+. ...+++
T Consensus 21 ~~~~A~~~~~~Al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~ 78 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYY 78 (477)
T ss_dssp CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 455666667777776553 2457788999999999999999999999998776 678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC--YTELGDLERAARFYD 236 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~--y~~~g~~~~A~~~y~ 236 (245)
++|.++..+|++++|+.+|++++++ .|....++.+++.+ +...|++++|++.++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998 66666788888888 888999999999988
No 154
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.00 E-value=1.3e-08 Score=88.18 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-
Q 025972 87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV- 165 (245)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~- 165 (245)
+.+.+.......+.++..+++++..... ..-.+....+.++.++|.+|..+|+|++|+.++++++++....
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~--------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSE--------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSC--------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccC--------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 3333444444445555566666554322 1124566778888999999999999999999999999998874
Q ss_pred -CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHc
Q 025972 166 -KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTEL 225 (245)
Q Consensus 166 -~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~ 225 (245)
.++...+..++++|.+|..+|+|++|+.+|++|+++.+.. .|.|....++.+++.+..++
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999999975 46788888999999887654
No 155
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.00 E-value=4.2e-09 Score=84.93 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 025972 133 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 133 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~ 204 (245)
.++..+|.+|.. .+++++|+.+|+++++.. ...++.++|.++.. .+++++|+.+|+++++.
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 107 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--- 107 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence 445566777777 777777777777776541 35566777777777 77777777777777654
Q ss_pred cCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025972 205 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 205 ~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
+.+.++.++|.+|.. .|++++|.++|+++++.
T Consensus 108 -----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 108 -----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp -----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred -----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 135667777777777 77777777777777653
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=8e-09 Score=72.15 Aligned_cols=102 Identities=26% Similarity=0.426 Sum_probs=82.6
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+++...+. ....+..+|.++...|++++|+..++++++..+. ...++.
T Consensus 24 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~ 81 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPN----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWY 81 (125)
T ss_dssp CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred CHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHH
Confidence 445555566666654432 1236677899999999999999999999987665 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g 226 (245)
.+|.++...|++++|+.+++++++. .|....++.++|.++...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988 7777889999999987654
No 157
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.98 E-value=2.9e-09 Score=73.08 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...++.++|.++..+|+|++|+.+|++++++ +|....++.++|.+|..+|++++|..+|+++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4566778888888888888888888888887 67677788888888888888888888888888764
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=3e-09 Score=80.46 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI------------ 201 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~------------ 201 (245)
..+..|..+...|++++|+..|+++++..|+ ...++.++|.++...|++++|+..++++++.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence 3556688888888888888888888888887 7788888888888888888888877665322
Q ss_pred ---HHHcCC-------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 202 ---SEREGE-------------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 202 ---~~~~~d-------------~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....+. +|....+++++|.++...|++++|...|+++++.-
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 111111 45667899999999999999999999999998754
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.97 E-value=1.3e-08 Score=71.82 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIE 170 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~ 170 (245)
.....+.+.++..+.+++...+. ....+..+|.++...|++++|+.+++++++..+.. .+...
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 33334566666777777765543 13467788999999999999999999999999874 34444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g 226 (245)
...++.++|.++...|++++|+.+|+++++. .+. ......++.+....+
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCC-HHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999987 442 566777777766543
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.96 E-value=5.1e-09 Score=75.18 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Q 025972 86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 165 (245)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 165 (245)
...+.......+.+.++..|.+++...+. ....+..+|.++...|++++|+..+++++++.+.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~- 75 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ- 75 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-
Confidence 33344444445667777788888876653 1347778899999999999999999999999887
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025972 166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
...++.++|.++...|++++|+.+|++++++....... ........+..+...
T Consensus 76 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 76 -----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-FGDDIPSALRIAKKK 128 (137)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CTTHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH-HHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999996542211 133444555555443
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=6.6e-09 Score=71.91 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Q 025972 86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 165 (245)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 165 (245)
...+.......+.+.++..+.+++...+. ....+..+|.++...|++++|+..++++++..+.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 70 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD- 70 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-
Confidence 33334444444566677777777776543 1346778899999999999999999999998776
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025972 166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 222 (245)
Q Consensus 166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y 222 (245)
...++.++|.++...|++++|+.+++++++. .|....++..++.+.
T Consensus 71 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 -----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH------EANNPQLKEGLQNME 116 (118)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHhh
Confidence 6778999999999999999999999999887 677777888887764
No 162
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.94 E-value=1.2e-09 Score=74.24 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=72.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025972 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~-a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
+..|..+...|++++|+..|+++++..+. ... ++.++|.++..+|++++|+.+|++++++ +|....+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------NPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHH
Confidence 45689999999999999999999998776 567 8999999999999999999999999998 6666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 215 YGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+.+ +.+++|..+|++++...
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHH
T ss_pred HHH--------HHHHHHHHHHHHHhccC
Confidence 533 45677777777766543
No 163
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.94 E-value=5.7e-09 Score=71.58 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
...++.+|.+|...|++++|+.+|++++++.|+ ...++.++|.++...|++++|+..|++++++....++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~--- 77 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ--- 77 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch---
Confidence 446778899999999999999999999999887 67789999999999999999999999999997765553
Q ss_pred HHHHHHHHHHHHHcC
Q 025972 212 TEAYGAIADCYTELG 226 (245)
Q Consensus 212 ~~a~~~la~~y~~~g 226 (245)
.....+...+...+
T Consensus 78 -~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 78 -KDLSELQDAKLKAE 91 (100)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHcc
Confidence 33344444444433
No 164
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=5.8e-09 Score=85.44 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
....+.+|.++...|++++|+..|+++++..|+.. ...++.++|.++...|+.++|+..|++++..
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 44677889999999999999999999999887611 2678999999999999999999999999765
No 165
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.93 E-value=1.2e-08 Score=83.83 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG--ASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg--~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
..+..+|.++..+|++++|...++++++..|+ ........+ ..+...|++++|+..|+++++. .|.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------~p~ 198 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDED------ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK------CSP 198 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------SCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------CCC
Confidence 36677899999999999999999999987654 111111112 2233458999999999999988 677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 211 STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.+++++|.++..+|++++|...|+++++.-.
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999998654
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.92 E-value=5.6e-09 Score=73.51 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+....++..+|.+|..+|++++|+.++++++++.|+ ...++.++|.++...|++++|+..++++++.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446678889999999999999999999999999887 6889999999999999999999999999988
No 167
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.91 E-value=3.1e-08 Score=85.87 Aligned_cols=113 Identities=15% Similarity=-0.025 Sum_probs=89.4
Q ss_pred HHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHH
Q 025972 99 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAAR 176 (245)
Q Consensus 99 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~ 176 (245)
+.++..|++++..... ..-.+....+.++.++|.+|..+|+|++|..++++++++.... .++...+..++
T Consensus 315 ~eA~~~~~~~L~i~~~--------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 315 SELLEICELSQEKMSS--------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHHHHHHHHHHHHHTT--------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC--------ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4445555555554332 1124566788889999999999999999999999999998874 46777889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHH
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIA 219 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la 219 (245)
++|.+|..+|+|++|+.+|++|+++.+.. .|.|.......+|.
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999874 45666666666553
No 168
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=1.1e-08 Score=79.91 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=62.7
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc
Q 025972 134 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 134 ~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+.+.+|.+|.. .+++++|+.+|+++.+..+ ......+++++|.+|.. .+++++|+.+|+++++.
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---- 158 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSE----SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---- 158 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT----SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC----CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----
Confidence 55566777666 6677777777777665322 22256777777777777 66777777777776542
Q ss_pred CCcchHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 025972 206 GEYSGSTEAYGAIADCYTEL-G-----DLERAARFYDKYISR 241 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~-g-----~~~~A~~~y~~al~~ 241 (245)
++.+.+++++|.+|..- | ++++|..+|+++++.
T Consensus 159 ---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 ---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp ---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 34556677777777654 3 677777777777654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.2e-08 Score=73.80 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025972 89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 168 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 168 (245)
+.......+.+.++..|.+++...+. .......+..+|.+|...|++++|+..+++++++.+.
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---- 97 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDAT-------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---- 97 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc----
Confidence 33333344566666777777765442 2223567788999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025972 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 223 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~ 223 (245)
...++.++|.++...|++++|+.+|++++++ .|....++..++.+..
T Consensus 98 --~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 --DVKALYRRSQALEKLGRLDQAVLDLQRCVSL------EPKNKVFQEALRNISG 144 (148)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHh
Confidence 5788999999999999999999999999998 6666777777776654
No 170
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.88 E-value=2.9e-08 Score=72.29 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=78.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+|..|...+..++|+.+|++|.+. . ...+++++|.+|.. .+|+++|+.+|+++.+. +.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------g~~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--N------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--C------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--------CCHH
Confidence 799999999999999999999875 2 57889999999999 89999999999999753 3467
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025972 214 AYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
+++++|.+|.. .+|+++|.++|+++.+.
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 89999999999 99999999999999875
No 171
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=2.4e-08 Score=69.79 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
...++.+|.+|...|++++|+.+|++++++.+. ...++.++|.++...|++++|+..|++++++....++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 347778899999999999999999999998887 6778999999999999999999999999999665444
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.87 E-value=4.6e-08 Score=69.28 Aligned_cols=110 Identities=16% Similarity=0.107 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHH
Q 025972 92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 171 (245)
.....+.+.++..+.+.+...+. .+ ....+++.+|.++...|++++|+..|+++++..|+.. ..
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~-----------~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~ 75 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPN-----------GV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KA 75 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-----------ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---TH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCC-----------Cc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---cc
Confidence 33344566666777777776553 11 1234677889999999999999999999999877621 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 223 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~ 223 (245)
..++..+|.++..+|++++|+.+|+++++. .|....+......+-.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ------YPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCChHHHHHHHHHHH
Confidence 778999999999999999999999999988 4544444444444333
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.87 E-value=4.2e-09 Score=74.98 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025972 93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 172 (245)
....+.+.++..+.+++...|. ...+++.+|.++...|++++|+..|++++++.|+ ..
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~ 85 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DI 85 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence 3344566777778888876654 2447778899999999999999999999999988 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.++.++|.++...|++++|+..+++++++
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999887
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.86 E-value=4.6e-09 Score=78.09 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhCC
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL----------EKAFTEFKAALELAQNVK 166 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~~ 166 (245)
..+.++..+.+++...|. ....+.++|.++...+++ ++|+..|++|+++.|+
T Consensus 17 ~feeA~~~~~~Ai~l~P~----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-- 78 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--
Confidence 566777778888887765 244777788898888765 5999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 167 DPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 167 d~~~~~~a~~~lg~~~~~~g-----------~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
...+++++|.+|..+| ++++|+.+|++|+++ +|...
T Consensus 79 ----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l------~P~~~ 125 (158)
T 1zu2_A 79 ----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE------QPDNT 125 (158)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------CTTCH
T ss_pred ----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh------CCCCH
Confidence 8999999999999885 899999999999999 67644
No 175
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.86 E-value=1.8e-08 Score=66.78 Aligned_cols=67 Identities=28% Similarity=0.481 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++..+|.++...|++++|+.+|+++++. .|....++.++|.+|...|++++|..+++++++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 5678899999999999999999999999998 677788999999999999999999999999998643
No 176
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=2.7e-09 Score=80.43 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=77.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025972 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221 (245)
Q Consensus 142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~ 221 (245)
+...|++++|+..++++++..+. ...++..+|.++...|++++|+.+|++++++ .|....++.++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQL------RGENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHH
Confidence 34568999999999999998776 6788999999999999999999999999998 66678899999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHHHhh
Q 025972 222 -YTELGDL--ERAARFYDKYISRLE 243 (245)
Q Consensus 222 -y~~~g~~--~~A~~~y~~al~~~~ 243 (245)
|...|++ ++|..+++++++...
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCC
Confidence 8899999 999999999998643
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.2e-08 Score=70.22 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...++.++|.++...|+|++|+..|++++++ .|..+.++.++|.+|..+|++++|+.+|+++++...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999999998 777789999999999999999999999999987643
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=3.8e-09 Score=86.30 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+...+.......+.+.++..|.+++...+. ....+.++|.+|...|++++|+..+++++++.++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 334444555555777888888888887654 2447778999999999999999999999998776
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025972 165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
...+++++|.++..+|++++|+.+|++++++....
T Consensus 71 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 71 ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 67899999999999999999999999999986643
No 179
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=3.8e-08 Score=76.85 Aligned_cols=113 Identities=14% Similarity=-0.015 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHhCCChHHH
Q 025972 96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ----DLEKAFTEFKAALELAQNVKDPIEE 171 (245)
Q Consensus 96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~l~~~~~d~~~~ 171 (245)
.+.+.++..|.++.+.-. ..+.+.+|.+|.. + ++++|+.+|+++.+. . .
T Consensus 32 ~~~~~A~~~~~~a~~~g~------------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g------~ 84 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQGD------------------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G------S 84 (212)
T ss_dssp TCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T------C
T ss_pred CCHHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C------C
Confidence 356677778888876321 2377788999998 7 999999999999664 5 5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS--GSTEAYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 172 ~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~~d~~--~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
..+++++|.+|.. .+++++|+.+|+++++. .+ ..+.+++++|.+|.. .+++++|..+|+++++.
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 7899999999998 99999999999999999 55 568899999999999 99999999999999876
No 180
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.76 E-value=1.1e-07 Score=65.66 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 211 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~ 211 (245)
..++.+|..++..++|..|+.+|++|++..+.-.. ......++..+|.++.++|++++|+.++++++++ .|..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l------~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Confidence 35778999999999999999999999998764321 2335678899999999999999999999999999 7877
Q ss_pred HHHHHHHH
Q 025972 212 TEAYGAIA 219 (245)
Q Consensus 212 ~~a~~~la 219 (245)
..+..|++
T Consensus 80 ~~~~~n~~ 87 (104)
T 2v5f_A 80 QRANGNLK 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhHH
Confidence 77888876
No 181
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.75 E-value=4e-08 Score=80.99 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
++...|..+...|++++|...|++|++..+. ....+...+..... .|++++|+..|+++++. .|..+
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------~p~~~ 203 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIP 203 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcH
Confidence 4455566666666666666666666654432 12233333333322 57777777777777776 55667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.++.++|..+...|++++|...|++++..
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 78888888888888888888888888874
No 182
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=1.2e-07 Score=77.18 Aligned_cols=101 Identities=10% Similarity=-0.010 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-ST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~ 212 (245)
..+.+|.+++..+++++|+.+++++.. ..++.....+++++|.++...|++++|+.+|++++.- ..+|. ..
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~ 208 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACAR 208 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccH
Confidence 778899999999999999999986644 2344445678999999999999999999999998732 11154 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 213 EAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+.+++|.++..+|+.++|...|++++..-
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999999998753
No 183
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.73 E-value=2.8e-08 Score=81.88 Aligned_cols=100 Identities=9% Similarity=-0.012 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~-a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
....+...|..+...|++++|...|++++++.+. ... ++.++|..+.+.|++++|+..|+++++. .|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p 165 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRMIFKKARED------AR 165 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------TT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CC
Confidence 4445556666666666666666666666654332 122 5556666666666666666666666554 33
Q ss_pred hHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHh
Q 025972 210 GSTEAYGAIADCYT-ELGDLERAARFYDKYISRL 242 (245)
Q Consensus 210 ~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~~ 242 (245)
.....+...+.... ..|++++|...|+++++..
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33344444443322 2566666666666666554
No 184
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.67 E-value=2.8e-07 Score=63.65 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d-~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.-++.+|..++..|+|..|+.+|++|++....... ......++.++|.+|..+|++++|..+++++++.-.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 345788999999999999999999999998764321 345778999999999999999999999999997643
No 185
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.64 E-value=1.4e-07 Score=63.82 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~-a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.+.|..+...|++++|+..|+++++. .|.... ++.++|.+|...|++++|..+|+++++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56788999999999999999999998 777788 999999999999999999999999998754
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.58 E-value=5.4e-07 Score=78.94 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc
Q 025972 133 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 133 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~ 205 (245)
.+.+.+|.+|...| ++++|+.+|+++.+. . ...+++++|.++.. .+++++|+.+|+++++.
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---- 396 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ---- 396 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----
Confidence 35677888888866 789999999998875 2 46788999999999 89999999999998763
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Q 025972 206 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL 242 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~~ 242 (245)
+.+.+++++|.+|.. .+|+++|..+|+++++.-
T Consensus 397 ----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 236789999999998 899999999999998864
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=3e-07 Score=62.71 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..++..+|.++...|++++|+.+++++++. .+....++.++|.+|...|++++|..+++++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 345678999999999999999999999998 666778999999999999999999999999998643
No 188
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.44 E-value=2.3e-06 Score=74.95 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 131 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~ 202 (245)
...+.+.+|..|.. .+++++|+.+|+++.+. . ...+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 144 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ- 144 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 55667788999988 88999999999998763 2 45778889999988 88999999999998653
Q ss_pred HHcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025972 203 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 241 (245)
Q Consensus 203 ~~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~ 241 (245)
+.+.+++++|.+|.. .+++++|.++|+++++.
T Consensus 145 -------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 145 -------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 346788999999988 88999999999998764
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1e-06 Score=79.08 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=101.1
Q ss_pred HHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhCCCh
Q 025972 99 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDP 168 (245)
Q Consensus 99 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~d~ 168 (245)
+.++..+.+++...|. ...++..++.+....|+ +++|++.++++++..|+
T Consensus 46 eeal~~~~~~l~~nP~----------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---- 105 (567)
T 1dce_A 46 ESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---- 105 (567)
T ss_dssp HHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----
Confidence 5556677777776654 24577888888888888 99999999999999988
Q ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHh
Q 025972 169 IEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRL 242 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g--~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~~ 242 (245)
...++.+.+.+....+ +++++++.+.+++++ ++....++.+.+.+....| .++++.++++++|+.-
T Consensus 106 --~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 106 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp --CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred --CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 8889999999999999 779999999999999 8888999999999999999 9999999999988753
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.41 E-value=1.2e-06 Score=78.58 Aligned_cols=119 Identities=8% Similarity=-0.024 Sum_probs=101.8
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
.+.++..+.+++...|. ...++..++++....+ ++++|++.+.+++++.++ ...++
T Consensus 89 ~~~eL~~~~~~l~~~pK----------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW 146 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCW 146 (567)
T ss_dssp HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHH
Confidence 45566667777765554 3557888899999999 679999999999999988 88899
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHH
Q 025972 176 RGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYIS 240 (245)
Q Consensus 176 ~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~--------------g~~~~A~~~y~~al~ 240 (245)
.+.|.+....| .++++++++.++++. ++....++++.|.++..+ +.+++|.+++++|+.
T Consensus 147 ~~R~~~l~~l~~~~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 147 DYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999988 888899999999999885 568999999999998
Q ss_pred Hhhc
Q 025972 241 RLES 244 (245)
Q Consensus 241 ~~~~ 244 (245)
...+
T Consensus 221 ~~P~ 224 (567)
T 1dce_A 221 TDPN 224 (567)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 6543
No 191
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.33 E-value=2.3e-05 Score=58.06 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
...+.......+..|.|+.|+.....++.+.++..+ +......+..+|.+++..++|.+|..+|++||+..+.....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556677888899999999999999999876555 66788899999999999999999999999999887743211
Q ss_pred -------------------chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 209 -------------------SGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 209 -------------------~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
+...+..+.+|.||.++|++++|+...+.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 22346788999999999999999987653
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.32 E-value=2.1e-06 Score=75.97 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----------------------------
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---------------------------- 184 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---------------------------- 184 (245)
..+...|..+...|++++|...|++++++.+. ++ ..++.++|..+.+
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--Cc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 35556677777778888888888877765332 11 1234444444444
Q ss_pred -------cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 185 -------QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 185 -------~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.|++++|...|+++++. .|..+.++.+++..+...|+.++|...|++++..
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHH------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 45555555555555544 3444555566666666666666666666666553
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.31 E-value=1.9e-06 Score=74.99 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=54.7
Q ss_pred HHHHHHHH-H--HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHc
Q 025972 134 SRLKTGKN-F--LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQISERE 205 (245)
Q Consensus 134 ~~~~~g~~-~--~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-----~~~~Ai~~~~~al~~~~~~ 205 (245)
+.+.+|.+ + ...+++++|+.+|+++.+. . ...+.+++|.+|. .| ++++|+.+|+++.
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa------ 314 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV------ 314 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT------
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh------
Confidence 44555665 3 3456667777777666532 1 3556667776665 44 6777777777664
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 025972 206 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYIS 240 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~ 240 (245)
++.+.+++++|.+|.. ..|+++|..+|+++.+
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 2235667777777665 3377777777777664
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=1.2e-06 Score=71.37 Aligned_cols=95 Identities=11% Similarity=-0.057 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
..+..+..+...|+|++|.+.+...+...+. .. +.+.+|.++.+.++|++|+.+++++... .+......
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~ 172 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGA 172 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHH
Confidence 4445588999999999999999887653333 44 8899999999999999999999876443 11112356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
+++++|.++..+|++++|..+|++++
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999999999999997
No 195
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.26 E-value=8.9e-06 Score=67.21 Aligned_cols=117 Identities=5% Similarity=-0.107 Sum_probs=100.1
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA 175 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~ 175 (245)
.+.++..+.+++...|. ...+.+..|.+....+ ++++++..+.+++...|+ ...+.
T Consensus 49 s~~aL~~t~~~L~~nP~----------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW 106 (306)
T 3dra_A 49 SERALHITELGINELAS----------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIW 106 (306)
T ss_dssp SHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHH
T ss_pred CHHHHHHHHHHHHHCcH----------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHH
Confidence 34566667777776654 2457888899999999 999999999999999888 67778
Q ss_pred HHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHh
Q 025972 176 RGLGASL----QRQ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--RAARFYDKYISRL 242 (245)
Q Consensus 176 ~~lg~~~----~~~---g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~--~A~~~y~~al~~~ 242 (245)
+..+.+. ... +++++++..+.++++. +|....++++.+.+....|.++ ++.++++++++.-
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 8888888 666 8999999999999998 8888999999999999999998 9999999998753
No 196
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.19 E-value=3e-06 Score=74.88 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 133 LSRLKTGKNFLR-------NQDLE-------KAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 133 ~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
..++..|..+.. .|+++ +|...|++|++ +.|+ ....+..+|..+...|++++|...|++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356666777775 79987 89999999986 5555 577888999999999999999999999
Q ss_pred HHHHHHHcCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 198 VLQISEREGEYSGS-TEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 198 al~~~~~~~d~~~~-~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
++++ .|.. ..++.+.|..+...|++++|...|+++++.
T Consensus 347 al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 347 LLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHS------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhCc------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9987 4443 357888888888888888888888888753
No 197
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.19 E-value=2.4e-05 Score=75.72 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-------- 204 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~-------- 204 (245)
..++.+|.++...|++++|+..|.+| + ....+..+|.++.+.|+|++|+++|..|.+..+.
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----d------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----D------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 36778899999999999999999886 2 4667788999999999999999999887644311
Q ss_pred -----cC---------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 205 -----EG---------EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 205 -----~~---------d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+ +.+.. ..+.++|..+...|+|++|..+|+++-.
T Consensus 1175 faYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~n 1223 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSN 1223 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhH
Confidence 00 11222 3466799999999999999999988743
No 198
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=9e-06 Score=59.75 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g---~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
...+.+++|+++.+.+ +.++++..+++.++. +.| ...++++++|..|.++|+|++|..+++++++.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3455666666666666 455667666666654 113 45666677777777777777777777766664
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.19 E-value=3.5e-06 Score=73.31 Aligned_cols=59 Identities=7% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GKYREAIKYHSMV 198 (245)
Q Consensus 134 ~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~----g~~~~Ai~~~~~a 198 (245)
+.+.+|.+|...| ++++|+.+|+++.+..+. .+..++++|.+|... +++++|+.+|+++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 5556677777777 777777777776654333 233334444444333 3444555544444
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.19 E-value=8e-06 Score=55.11 Aligned_cols=65 Identities=14% Similarity=-0.033 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 172 KKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
...+..+|.+++..++ .++|...+++++++ +|....+...+|..+...|+|++|+.+|+++++..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567788888876666 79999999999999 89999999999999999999999999999988643
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.08 E-value=5.3e-06 Score=60.11 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-
Q 025972 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE- 224 (245)
Q Consensus 146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~- 224 (245)
+++++|+.+|+++.+.. + ..+. +|.+|...+..++|+.+|+++.+. +.+.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g----~----~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----E----MFGC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----C----TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCC----C----Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence 47899999999997643 2 2223 999999999999999999999754 346899999999999
Q ss_pred ---cCCHHHHHHHHHHHHHH
Q 025972 225 ---LGDLERAARFYDKYISR 241 (245)
Q Consensus 225 ---~g~~~~A~~~y~~al~~ 241 (245)
.+|+++|.++|+++.+.
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHcC
Confidence 89999999999999864
No 202
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=8.6e-05 Score=61.89 Aligned_cols=101 Identities=6% Similarity=-0.069 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCc
Q 025972 132 LLSRLKTGKNFLRNQD--LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~--~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~~~~~~d~ 208 (245)
..++...+.+....++ +++++..+.++++..+. ...+..+.+.+....|. ++++++++.++++. +
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~------~ 175 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR------N 175 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH------C
Confidence 4477888999999884 89999999999999888 88899999999999999 69999999999998 8
Q ss_pred chHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHhhc
Q 025972 209 SGSTEAYGAIADCYTEL--------------GDLERAARFYDKYISRLES 244 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~--------------g~~~~A~~~y~~al~~~~~ 244 (245)
|.+..++++.+.+.... +.++++++++++++....+
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~ 225 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 225 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 98899999999999887 4589999999999987654
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.06 E-value=3.7e-05 Score=51.80 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 134 ~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.+...|.+++..++ .++|...+++++++.|+ ...+...+|..++..|+|++|+.+++++++.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45556777766665 79999999999999999 8999999999999999999999999998876
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.05 E-value=2.4e-05 Score=64.62 Aligned_cols=98 Identities=8% Similarity=-0.036 Sum_probs=85.8
Q ss_pred HHHHHHHHH----HHC---CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 025972 134 SRLKTGKNF----LRN---QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--EAIKYHSMVLQISER 204 (245)
Q Consensus 134 ~~~~~g~~~----~~~---g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~--~Ai~~~~~al~~~~~ 204 (245)
++..++.+. ... +++++++..+.++++..++ ...+..+.+.+....|+++ ++++++.++++.
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--- 175 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--- 175 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence 566667777 666 7899999999999998888 7888999999999999998 999999999988
Q ss_pred cCCcchHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhh
Q 025972 205 EGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLE 243 (245)
Q Consensus 205 ~~d~~~~~~a~~~la~~y~~~g~------~~~A~~~y~~al~~~~ 243 (245)
++.+..++++.+.+....|. +++++++++++|..-.
T Consensus 176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS
T ss_pred ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC
Confidence 88888999999999998887 9999999999987643
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00019 Score=59.77 Aligned_cols=99 Identities=8% Similarity=-0.006 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVL 199 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g--~~~~Ai~~~~~al 199 (245)
..++...+.+....++ +++++..+..++...|+ ...+.++.+.+....+ ++++++..+.+++
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 3456666777666554 68899999999998887 7888999999999999 4999999999999
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Q 025972 200 QISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRL 242 (245)
Q Consensus 200 ~~~~~~~d~~~~~~a~~~la~~y~~~g~-~~~A~~~y~~al~~~ 242 (245)
+. +|.+..++.+.+.+....|. ++++.++++++++.-
T Consensus 138 ~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 138 EA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred Hh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 99 88889999999999999999 699999999999854
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.93 E-value=0.00013 Score=70.77 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-------------CChHH--------HHHHHHHHHHHHHHcCCHHHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------------KDPIE--------EKKAARGLGASLQRQGKYREAI 192 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------~d~~~--------~~~a~~~lg~~~~~~g~~~~Ai 192 (245)
.+...|..+...|+|++|++++..|++..+.. +.... ....+.++|..+...|+|++|+
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 55668999999999999999998877544221 11111 1123567999999999999999
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 193 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 193 ~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+|.++ ..|..+|.+|..+|++++|++.+++|.+
T Consensus 1216 ~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1216 LLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 999985 3678899999999999999999998854
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.90 E-value=0.00012 Score=53.83 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025972 133 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 133 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
.+.+..|+++...+ +.++++..++..++.. ++.....+++++|..+++.|+|++|..++++++++ +|
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i------eP 102 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EP 102 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CC
Confidence 36777799999888 6669999999988865 12237889999999999999999999999999999 78
Q ss_pred hHHHHHHHH
Q 025972 210 GSTEAYGAI 218 (245)
Q Consensus 210 ~~~~a~~~l 218 (245)
+...+....
T Consensus 103 ~n~QA~~Lk 111 (152)
T 1pc2_A 103 QNNQAKELE 111 (152)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 666655443
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.88 E-value=3.3e-05 Score=64.81 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=99.5
Q ss_pred HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
.+.++..+.+++...|. ...+...++.+....| ++++++..+.+++...++ ...+.+
T Consensus 70 se~AL~lt~~~L~~nP~----------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~ 127 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA----------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWH 127 (349)
T ss_dssp SHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHH
T ss_pred CHHHHHHHHHHHHhCch----------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHH
Confidence 34566667777776654 2447888899999999 599999999999998888 788899
Q ss_pred HHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHh
Q 025972 177 GLGASLQRQ-G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--------RAARFYDKYISRL 242 (245)
Q Consensus 177 ~lg~~~~~~-g-~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~--------~A~~~y~~al~~~ 242 (245)
..+.+.... + +++++++.+.++++. +|.+..++...+.+....|.++ +++++++++++.-
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 999999888 8 999999999999887 8888899999999999988887 9999999998753
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=0.00074 Score=56.82 Aligned_cols=64 Identities=16% Similarity=0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+.++..+|..+...|++++|+.++++|+.+ ++. ..+|..+|.++...|++++|.+.|++|+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5667788888888889999999999999999 454 567888999999999999999999999976
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.83 E-value=0.0022 Score=54.58 Aligned_cols=110 Identities=5% Similarity=-0.101 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcchHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d~~~~~ 212 (245)
....+|..|+..|+|.+|...+.+.++..+...|.....+.+..-...|...+++.++-..+.+|....... .+....+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 344779999999999999999999999988888888899999999999999999999999999998887665 3333456
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhh
Q 025972 213 EAYGAIADCYT-ELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 213 ~a~~~la~~y~-~~g~~~~A~~~y~~al~~~~ 243 (245)
.....-|..+. ..++|..|..+|-++.+.+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 66666788888 89999999999988876553
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.79 E-value=9.5e-05 Score=60.05 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHH
Q 025972 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----GKYREAIKYHSMVLQISEREGEYSGS-TEAYGAIADC 221 (245)
Q Consensus 148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~-----g~~~~Ai~~~~~al~~~~~~~d~~~~-~~a~~~la~~ 221 (245)
...|....++|+++.|+ .....++..+|..|... |+.++|..+|++|+++ .|+. ..+++..|..
T Consensus 179 l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------nP~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------CSAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------CCTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------CCCCCchHHHHHHHH
Confidence 45677778888887765 33466899999999994 9999999999999999 7864 8899999999
Q ss_pred HHH-cCCHHHHHHHHHHHHHHh
Q 025972 222 YTE-LGDLERAARFYDKYISRL 242 (245)
Q Consensus 222 y~~-~g~~~~A~~~y~~al~~~ 242 (245)
+.. .|+++.|..+++++++.-
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHhcCCHHHHHHHHHHHHcCC
Confidence 887 599999999999998753
No 212
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.75 E-value=5e-05 Score=63.71 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLRN-Q-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--------EAIKYHSMVLQI 201 (245)
Q Consensus 132 ~~~~~~~g~~~~~~-g-~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~--------~Ai~~~~~al~~ 201 (245)
..++..++.+.... + +++++++.+.++++..++ ...+....+.+....|.++ ++++++.++++.
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 44677788888887 7 899999999999988777 7788888888888888888 999999999998
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhh
Q 025972 202 SEREGEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISRLE 243 (245)
Q Consensus 202 ~~~~~d~~~~~~a~~~la~~y~~~g~-------~~~A~~~y~~al~~~~ 243 (245)
++.+..++++.+.+....+. ++++++++++++..-.
T Consensus 197 ------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 197 ------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp ------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred ------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 88889999999999999987 7999999999998654
No 213
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.67 E-value=0.0008 Score=49.84 Aligned_cols=89 Identities=10% Similarity=0.164 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-------------------HHHHHHHHHHHHHHcCC
Q 025972 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-------------------EKKAARGLGASLQRQGK 187 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-------------------~~~a~~~lg~~~~~~g~ 187 (245)
....++.++...|..++..++|..|...|++|+.+.+.+..... ..+..+.++.|+...++
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~ 137 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ 137 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence 45567778888999999999999999999999998885432221 23677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 222 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y 222 (245)
+++|+..++.. . .....+.....||.+|
T Consensus 138 ~~~Ai~~Le~I---p----~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 138 DKDAIAILDGI---P----SRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHTS---C----GGGCCHHHHHHHHHHC
T ss_pred HHHHHHHHhcC---C----chhcCHHHHHHHHHHh
Confidence 99999987652 1 1223445556667665
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.62 E-value=0.00084 Score=55.26 Aligned_cols=122 Identities=10% Similarity=-0.007 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 176 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~ 176 (245)
+.+.++..+.+.+...+. .....+....+.++..+|+++.|...+++..+..++.-..........
T Consensus 115 ~~eeAL~~l~~~i~~~~~--------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEA--------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp CHHHHHHHHHHHHTSSCS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCC--------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 556666666655543320 123445666799999999999999999988665440000000222233
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 177 GLGASLQRQG--KYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 177 ~lg~~~~~~g--~~~~Ai~~~~~al~~~~~~~d~~~--~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.-|++....| ++.+|+..|++..+. .|. ....+++ ++..+|++++|...++..++.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQT------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTT------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHh------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 3344466666 999999999996543 333 3344454 899999999999999876654
No 215
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.57 E-value=0.0005 Score=56.61 Aligned_cols=99 Identities=7% Similarity=-0.032 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch---
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--- 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--- 210 (245)
....+|.++...|++++|+..+.+.+...+ .....++..-++.++..+|+.+.|.+.+++..+. +++
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~------~~d~~~ 171 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA------IEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------Cccccc
Confidence 345789999999999999999999866442 1126777888899999999999999999997666 441
Q ss_pred -HHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHHh
Q 025972 211 -STEAYGAIADC--YTELG--DLERAARFYDKYISRL 242 (245)
Q Consensus 211 -~~~a~~~la~~--y~~~g--~~~~A~~~y~~al~~~ 242 (245)
.-....+++.+ ....| ++++|...|++..+.+
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 22334444444 55556 9999999999987654
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.54 E-value=7.7e-05 Score=64.38 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-------H
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS--E-------R 204 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~--~-------~ 204 (245)
.+..+|..++..|+|++|..+|.++ ..+..+|.++.++|+|++|++.++++.... + .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 7778899999999999999999875 356788999999999999999999883220 0 0
Q ss_pred cC---------Cc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 205 EG---------EY-SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 205 ~~---------d~-~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+ .. ...++-...+..+|.+.|.+++|+.++++++.
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 00 00 00111122355789999999999999998864
No 217
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.45 E-value=5.2e-05 Score=65.45 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
.++.++|..+...|+|++|..+|.++ ..+..+|.++..+|++++|.+.|.++.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 37889999999999999999999875 357789999999999999999999884
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.23 E-value=0.00028 Score=57.29 Aligned_cols=74 Identities=15% Similarity=0.005 Sum_probs=63.1
Q ss_pred ccccCChHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHHHH-cCCHHHHHHH
Q 025972 122 EVIVDPKKEELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQR-QGKYREAIKY 194 (245)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~d~~~~-~~a~~~lg~~~~~-~g~~~~Ai~~ 194 (245)
.+..+|+-....++..+|..|... |+.++|..+|++|+++.|+ . ...++..|..+.. +|++++|..+
T Consensus 189 AleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~------~~id~~v~YA~~l~~~~gd~~~a~~~ 262 (301)
T 3u64_A 189 ACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA------HDPDHHITYADALCIPLNNRAGFDEA 262 (301)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT------TCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC------CCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 344567766667778889999996 9999999999999999986 4 6778888998888 5999999999
Q ss_pred HHHHHHH
Q 025972 195 HSMVLQI 201 (245)
Q Consensus 195 ~~~al~~ 201 (245)
+++++..
T Consensus 263 L~kAL~a 269 (301)
T 3u64_A 263 LDRALAI 269 (301)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9999987
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.0014 Score=55.20 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---G-KYREAIKYHSMVLQISE 203 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~---g-~~~~Ai~~~~~al~~~~ 203 (245)
.++.++..|..+...++ ..+|+..|++|+++.|+ .+.++..++.++... + ..........++++...
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 46667777888776655 47899999999999998 677777666666421 1 11233344445555333
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.....+..+.++..+|..+...|++++|..++++|+..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 33445677888999999999899999999999999986
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.03 E-value=0.0032 Score=44.53 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQRQGKYRE---AIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~---Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+.+++|+++.+..+..+ +|..++..++- +.| ..-++++.+|..+.++|+|++|..+.+..++.
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4556667777766666555 55555554332 113 45667777777777777777777777777664
No 221
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.032 Score=48.26 Aligned_cols=113 Identities=10% Similarity=0.002 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~ 209 (245)
..+.....++.+|...|++.+|.........-.....+.....+.+......+...+||.+|...++++..........+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 34556677899999999999999998886654444556667778888888899999999999999999865444443333
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 210 -GSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 210 -~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.....+...|..+...++|.+|..+|..+.+.+
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 456677888999999999999999999988754
No 222
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.006 Score=52.61 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+...+|..|...|++++|.+.|.++.......+. ....+.+.-.++...+|+..+..+..++-.+....+|......
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 4556799999999999999999998886655443 4455666667788889999999999999888777776555556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
....-|..+...++|..|..+|-.++..+
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 66667888899999999999998876654
No 223
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.91 E-value=0.065 Score=45.49 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=89.2
Q ss_pred HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHHHHHHH
Q 025972 97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAA 175 (245)
Q Consensus 97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~~~~a~ 175 (245)
+...++..+.+.....+. .++...-...+......|...+++.++.+.+.+|......+ .++...+...
T Consensus 114 ~y~~a~~~i~~l~~~~~~----------~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 114 LYTEALALGAQLLRELKK----------LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp CHHHHHHHHHHHHHHHTT----------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc----------cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 556665666655555544 24556666777778999999999999999999999999887 7888888888
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025972 176 RGLGASLQ-RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 227 (245)
Q Consensus 176 ~~lg~~~~-~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~ 227 (245)
..-|..+. ..++|.+|-.+|-++.+-+...++ +....+...++.+-...++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~-~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDS-VKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccccccc-HHHHHHHHHHHHHHHHcCC
Confidence 88999999 899999999999999877664442 3333344445555444444
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.56 E-value=0.015 Score=41.00 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 134 SRLKTGKNFLRNQDLEK---AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~---A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
+.+..|+++....+... ++..++..+.- .++.....+++.+|..+++.|+|++|..+++..|++ .|+
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~------eP~ 106 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQ 106 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------CCC
Confidence 56667888887777665 66666664432 224467889999999999999999999999999999 776
Q ss_pred HHHHHH
Q 025972 211 STEAYG 216 (245)
Q Consensus 211 ~~~a~~ 216 (245)
+..+..
T Consensus 107 n~QA~~ 112 (126)
T 1nzn_A 107 NNQAKE 112 (126)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 555543
No 225
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.88 E-value=0.023 Score=49.87 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+..+|........++.|..+|.+|..+.|. .+..++.+|.+....|+.-+|+-+|.+++-. ....+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~------~~Pf~~ 221 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV------KFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS------SBCCHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHhc------CCCChh
Confidence 4557899999999999999999999999999 8888999999999999999999999998754 333455
Q ss_pred HHHHHHHHHHH
Q 025972 214 AYGAIADCYTE 224 (245)
Q Consensus 214 a~~~la~~y~~ 224 (245)
+..|+...+..
T Consensus 222 a~~nL~~~f~~ 232 (497)
T 1ya0_A 222 ASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666655543
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.73 E-value=0.12 Score=36.76 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 173 KAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~---~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+..++++++.+..+. .++|..++..++. +....-++++.+|..+.++|+|++|..+.+..++.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4455555555555443 2455555554432 12245566666777777777777777766666553
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.64 E-value=0.12 Score=37.10 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQRQGKYR---EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~---~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+.+++++++.+..+.. ++|..++..++- +....-++++.+|..+.++|+|++|..+.+..++.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444555566665555443 345555554332 11135556666666677777777777666666653
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.60 E-value=0.46 Score=40.10 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----CCCh-H----------HHHHHHHHHHHHHHHcCCHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKDP-I----------EEKKAARGLGASLQRQGKYREAIKY 194 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~d~-~----------~~~~a~~~lg~~~~~~g~~~~Ai~~ 194 (245)
........|......|+.+.|.+.+.+|+.++.. ..+. . ....+...++..+...|++++|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444555566666789999999999999987642 1111 1 1223455778888999999999999
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 195 ~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+..++.. +|..-.++..+-.++...|+..+|...|+++-+.+.
T Consensus 194 l~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 194 LEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999888 787777899999999999999999999999887654
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.32 E-value=0.19 Score=35.62 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 134 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
+.++.|++.....+. .+++..++..+... +.....+++.+|..+++.|+|++|..+.+..++. .|+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~------eP~ 110 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------ERN 110 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------CTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCC
Confidence 566667777766654 35666776655432 3336789999999999999999999999999988 776
Q ss_pred HHHHHH
Q 025972 211 STEAYG 216 (245)
Q Consensus 211 ~~~a~~ 216 (245)
+..+..
T Consensus 111 N~QA~~ 116 (134)
T 3o48_A 111 NKQVGA 116 (134)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 555543
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=1.6 Score=37.57 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025972 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.+.......++.....|...+|+.+|...++++.... ....++......+...|..+...++|.+|-.+|..+.+.+..
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 4566677788888999999999999999999987544 444566667788888999999999999999999999988776
Q ss_pred cCCcc
Q 025972 205 EGEYS 209 (245)
Q Consensus 205 ~~d~~ 209 (245)
.+|..
T Consensus 251 ~~d~~ 255 (445)
T 4b4t_P 251 KSDEA 255 (445)
T ss_dssp HSCHH
T ss_pred cCCHH
Confidence 66543
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.95 E-value=0.22 Score=35.76 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025972 134 SRLKTGKNFLRNQDLE---KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 210 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~---~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~ 210 (245)
+.++.|++.....+.+ +++..++..+.. ++.....+++.++..+++.|+|++|..+.+..|++ .|+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~------eP~ 109 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------ERN 109 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT------CCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------CCC
Confidence 5666778877776655 566666665542 12236788999999999999999999999999998 776
Q ss_pred HHHHH
Q 025972 211 STEAY 215 (245)
Q Consensus 211 ~~~a~ 215 (245)
+..+.
T Consensus 110 n~QA~ 114 (144)
T 1y8m_A 110 NKQVG 114 (144)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 55543
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.94 E-value=0.088 Score=46.15 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
..++..+|...+-...++.|..+|.+|+.+ .|.....|+.+|.++...|+.-+|..+|-+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 456788999999999999999999999999 888889999999999999999999999999875
No 233
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.67 E-value=0.11 Score=47.31 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025972 149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI-KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 227 (245)
Q Consensus 149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai-~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~ 227 (245)
+.....|++++...+. ....+...+......|+.++|. ..|.+|+.. .|.....+...+......|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~------~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~------~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF------APEIWFNMANYQGEKNTDSTVITKYLKLGQQC------IPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCC
Confidence 3455679999998887 6777888888888999999997 999999887 56556678888999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 025972 228 LERAARFYDKYISRL 242 (245)
Q Consensus 228 ~~~A~~~y~~al~~~ 242 (245)
+++|.+.|+++++.+
T Consensus 394 ~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 394 IPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999863
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.36 Score=44.47 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
.+.--+..+...|+|+-|++..++|... .|....+++.|+.+|..+||++.|.-..+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4455567778899999999999999999 888899999999999999999999876654
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.03 E-value=0.46 Score=41.62 Aligned_cols=97 Identities=9% Similarity=0.098 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
.+..+-..|...|+.++|...+++..+. .+.. ....++.+=..+.+.|+.++|.+.|++-. +.|-.|+ ..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~G~~Pd-~~ 176 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQP---RLRSYGPALFGFCRKGDADKAYEVDAHMV----ESEVVPE-EP 176 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCCCC-HH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---ccceehHHHHHHHHCCCHHHHHHHHHHHH----hcCCCCC-HH
Confidence 4444566778889999999999886542 1111 24456777778899999999999998853 2344454 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.|..+-.+|.+.|+.++|.+.+++.-+
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 788899999999999999999988654
No 236
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.95 E-value=0.48 Score=43.20 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=47.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025972 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTE 213 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~~~~ 213 (245)
+...+....+.|+.+.|...|.+|++..+... ...+...+......+ +++.|...|+++++.+ +....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~------p~~~~ 505 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYF------ATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH------TTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCchH
Confidence 33334444455666666666666665422111 112222333333333 3666666666666652 22223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.+...+......|+.++|...|++++..
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3334444455556666666666666543
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.21 E-value=0.24 Score=42.51 Aligned_cols=70 Identities=17% Similarity=0.019 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
...+...+|..+.+.|++++|.+.|.+....... .....+.+..+-+++...+|+..+..+++++-....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 4557888999999999999999999998776543 234567888899999999999999999999977654
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.58 E-value=5.3 Score=36.25 Aligned_cols=98 Identities=10% Similarity=-0.032 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHhCCChHHHHHH---------HHHHHHHHHHcCCHHHHHHHHH--
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAA------LELAQNVKDPIEEKKA---------ARGLGASLQRQGKYREAIKYHS-- 196 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~a------l~l~~~~~d~~~~~~a---------~~~lg~~~~~~g~~~~Ai~~~~-- 196 (245)
.+..+|..+...++++.|...|.++ ..++...++....... +.....++...|++++|++.|.
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5567899999999999999988764 3344444444432222 1123345666888888888775
Q ss_pred ----HHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHH
Q 025972 197 ----MVLQISEREGEYS-GSTEAYGAIADCYTELGDLERA 231 (245)
Q Consensus 197 ----~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A 231 (245)
+|+.++++.+... .........+.-....|+.+.|
T Consensus 763 ~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 763 QRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp TCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 4677777665422 1445555666666667765433
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.57 E-value=3.3 Score=30.86 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=64.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH----------c
Q 025972 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL--QISER----------E 205 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al--~~~~~----------~ 205 (245)
++...+..|.|..+.-...+ ++ .+.+.+.-..++...++|..|+...++.+ ++-+. .
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~-------lN----T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHK-------LN----TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-------CC----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred hhhhhhhcchHhHHHHHHHh-------cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 47778888998887765543 11 23445556778999999999999999987 22100 0
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
-|..+.---+..+|......|+.++|+.+|......
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111223334667899999999999999999887653
No 240
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.21 Score=43.79 Aligned_cols=110 Identities=9% Similarity=-0.040 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH----------HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFT----------EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~----------~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+..+++.+..+-..|+...... .+..+++-+.--.|....+..++-+=..|...+.|++|..+..++. .
T Consensus 181 ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-f 259 (523)
T 4b4t_S 181 AKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-Y 259 (523)
T ss_dssp ----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-S
T ss_pred HHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-C
Confidence 3455555666666666554321 2233333322234555666777778888999999999999999873 2
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 202 ~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+....+...+..++.+|+++.-.++|.+|.+++..|+...
T Consensus 260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22222233456778889999999999999999999988654
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.39 E-value=1.7 Score=31.59 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=67.2
Q ss_pred HHCCCH------HHHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025972 143 LRNQDL------EKAFTEFKAALELAQNVKDPIE--EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 143 ~~~g~~------~~A~~~~~~al~l~~~~~d~~~--~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
-..|++ ++-.+.|++|+...|-.+.... ....+...+.. ...+|.++|-..|+.++++ ....+..
T Consensus 24 E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------hKkFAKi 96 (161)
T 4h7y_A 24 EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------CKKFAFV 96 (161)
T ss_dssp HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------CTTBHHH
T ss_pred HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------hHHHHHH
Confidence 333777 7778889999886654332111 23334445544 5668999999999999987 2223777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 215 YGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+...|.--..+|+.++|.+.+.+|+...
T Consensus 97 wi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 97 HISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 8888888889999999999999998754
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.28 E-value=2.9 Score=36.30 Aligned_cols=102 Identities=7% Similarity=-0.140 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH----------------------------------HHHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----------------------------------EEKKAARGLG 179 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~----------------------------------~~~~a~~~lg 179 (245)
.++..+......|+.++|...|++|+.. |....-. .....+...+
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 4555677788899999999999999987 5422100 0011222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhh
Q 025972 180 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE 243 (245)
Q Consensus 180 ~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~~~ 243 (245)
....+.++.+.|...|.+| +. .+.....+...|..-...+ +.+.|...|+.+++.+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 3344566677777777776 21 1112344544555544444 68999999998887553
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.27 E-value=0.81 Score=42.14 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
.+...+......|+|+.|+...++|...+|. .-.++..|+.+|..+|+|+.|+-.++-.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444577777899999999999999999998 8899999999999999999999877653
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.78 E-value=1.8 Score=36.37 Aligned_cols=72 Identities=11% Similarity=-0.015 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCcch
Q 025972 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSG 210 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~-~~~d~~~ 210 (245)
.+...++..+...|++++|+....+++...|- ...++..+-.++...|+..+|+..|++.-+... +.|-+|+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~------~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34445677888999999999999999888775 556777888899999999999999999877554 4566554
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.85 E-value=8.5 Score=31.37 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=67.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCC-cchHHH
Q 025972 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGSTE 213 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~-~~Ai~~~~~al~~~~~~~d-~~~~~~ 213 (245)
+.-+..+...|++..|.+...-.++.+...+.+.. ......+..++.....- .+=.++.+++++-..+.++ ..+.+.
T Consensus 57 ~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~ 135 (312)
T 2wpv_A 57 SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPY 135 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHH
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHH
Confidence 34466677778888888876666666666443332 22344455555443211 1235677788888887765 457788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 025972 214 AYGAIADCYTELGDLERAARFYD 236 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~ 236 (245)
.|..+|..|.+-|++.+|..+|-
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999999999999883
No 246
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=87.82 E-value=1.7 Score=28.20 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
+|....+..+...|.-.-..|+|++|+..|..++++.-
T Consensus 10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56666677777777777778888888888888777654
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.05 E-value=13 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 156 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198 (245)
Q Consensus 156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a 198 (245)
+.|+++++.+.+ ...+..+|..+...++++.|...|.++
T Consensus 669 ~~A~~~~~~~~~----~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLTDESA----EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCc----HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334444444443 345678999999999999999999874
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.13 E-value=2.9 Score=40.46 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=70.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 135 RLKTGKNFLRNQDLEKAFTEFKAALE-----------------LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~-----------------l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
.+.+|.++...|++++|..+|++|-. +.+...........|..+...+-..+.++.++...+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46789999999999999999987631 1111111111234567788888899999999999999
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025972 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 236 (245)
Q Consensus 198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~ 236 (245)
||+... .++.......+.++=..+...|+|++|.....
T Consensus 925 Ai~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 925 ADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 987632 12222234467777788889999999976653
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.83 E-value=10 Score=28.15 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=47.2
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHcCCcchHHH---
Q 025972 143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI------SEREGEYSGSTE--- 213 (245)
Q Consensus 143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~------~~~~~d~~~~~~--- 213 (245)
...|+++.|.+..++. . ....+..+|.....+|+++-|...|.++-++ +.-.|+......
T Consensus 16 L~lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 3457777776665432 1 2445777888888888888888888764222 112232211110
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 214 ------AYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 214 ------a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
-+..-..++..+||.+++.+.|.+
T Consensus 85 iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011223445667777777776654
No 250
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=84.19 E-value=3.5 Score=35.95 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025972 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 226 (245)
Q Consensus 147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g 226 (245)
+.++|.+.|++..+. .+.. ...+++.+-..+.+.|+.++|...+++.. +.|-.|+ ..+|..+=..|...|
T Consensus 85 ~l~~A~~lf~~M~~~--G~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~Pd-~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 85 GLSRGFDIFKQMIVD--KVVP---NEATFTNGARLAVAKDDPEMAFDMVKQMK----AFGIQPR-LRSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCC-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-cceehHHHHHHHHCC
Confidence 356777777765431 1111 24467778888999999999999998843 2343443 457888888999999
Q ss_pred CHHHHHHHHHHHHH
Q 025972 227 DLERAARFYDKYIS 240 (245)
Q Consensus 227 ~~~~A~~~y~~al~ 240 (245)
+.++|.+.+++..+
T Consensus 155 ~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 155 DADKAYEVDAHMVE 168 (501)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988765
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.75 E-value=3.7 Score=29.84 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=62.8
Q ss_pred hhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 025972 103 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL 182 (245)
Q Consensus 103 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~ 182 (245)
+.|++++...|.. . .......++.+...+.. ...+|.++|.+.|+.++.+.+. . +..+...+..-
T Consensus 40 d~YerAia~~Pp~------k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk---F---AKiwi~~AqFE 104 (161)
T 4h7y_A 40 GRYSQAIEALPPD------K--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK---F---AFVHISFAQFE 104 (161)
T ss_dssp HHHHHHHHHSCGG------G--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT---B---HHHHHHHHHHH
T ss_pred HHHHHHHHcCCcc------c--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH---H---HHHHHHHHHHH
Confidence 4566777766653 0 13455566666666654 5558999999999999987222 2 77777888888
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 025972 183 QRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 183 ~~~g~~~~Ai~~~~~al~~ 201 (245)
.++|+.+.|...+.+|+.+
T Consensus 105 iRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 105 LSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHhcc
Confidence 9999999999999999987
No 252
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=83.64 E-value=5.1 Score=26.23 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+...+..+...|+|++||+..++|..+
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 334455555555555555555555444
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=82.18 E-value=20 Score=34.38 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 212 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~ 212 (245)
.+..+=..|...|+.++|...+.+..+... .... ....|+-+=..+.+.|+.++|.+.|++- .+.|-.|+ .
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM----~~~G~~PD-v 200 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---TLDMYNAVMLGWARQGAFKELVYVLFMV----KDAGLTPD-L 200 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---CHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHTTCCCC-H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHH----HHcCCCCc-H
Confidence 445556778888999999999977544321 1110 2456777888899999999999999884 33555564 4
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 025972 213 EAYGAIADCYTELGD-LERAARFYDKYIS 240 (245)
Q Consensus 213 ~a~~~la~~y~~~g~-~~~A~~~y~~al~ 240 (245)
.+|+.+=.++.+.|+ .++|.+.+++..+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 567777778888887 5788898888765
No 254
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.05 E-value=3.6 Score=26.91 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
+.+..+...+..+...|.||+|+++.+++...+.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999987764
No 255
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=82.01 E-value=4.3 Score=35.24 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025972 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEA 214 (245)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~~~~a 214 (245)
...+....+.++.+.|...|++| . .+.. . ...+...+......+ +++.|...|+.+++.+ ++.+ ..
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~--~---~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~---~~ 356 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-G-NEGV--G---PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDST---LL 356 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-T-TSCC--C---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCH---HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-h-CCCC--C---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCH---HH
Confidence 33344444567888898889888 2 2211 1 123333344444444 6999999999998762 2233 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 215 YGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 215 ~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
+...+......|+.++|...|+++
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333344455666666666666553
No 256
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.01 E-value=14 Score=27.58 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHh----------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALE--LAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199 (245)
Q Consensus 132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~----------~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al 199 (245)
+.+.++.+.+|...++|.+|+...++.++ +.++ .-|+......+..+|..+...|+-+|||.++..+.
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 44677788999999999999999998872 1111 12333344557789999999999999999999876
Q ss_pred HH
Q 025972 200 QI 201 (245)
Q Consensus 200 ~~ 201 (245)
..
T Consensus 142 ~~ 143 (242)
T 3kae_A 142 GK 143 (242)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 257
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.84 E-value=18 Score=30.28 Aligned_cols=103 Identities=8% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025972 140 KNFLRNQDLEKAFTEFKAALELAQNV-----------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208 (245)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~al~l~~~~-----------~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~ 208 (245)
.+.....++++|.++.++........ .+......+...++..|...|+.++|..+.+++-......++.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 44556678899988887653322110 0111234456678888999999999999999998887776553
Q ss_pred c--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 209 S--GSTEAYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 209 ~--~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
+ .....|...+..|...+++..+..+.-.++..+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 3 345556667888889999988877766666543
No 258
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=81.43 E-value=1.6 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQ 200 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~ 200 (245)
..+|.-+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3444445555555555555555443
No 259
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=81.39 E-value=3.8 Score=26.29 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.+..+...|.-.-..|+|++|+.+|.++++.
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444666777777777777777777777654
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.46 E-value=23 Score=29.14 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=61.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCC-cchHH
Q 025972 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGST 212 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~-~~Ai~~~~~al~~~~~~~d-~~~~~ 212 (245)
++.-+..+...|++..|.+...-.++.+...+-+.. ......+..++.....- .+=..+.+++++-..+.++ ..+.+
T Consensus 58 L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp 136 (336)
T 3lpz_A 58 LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDP 136 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCH
Confidence 334455666667777776665555555554322111 12333444454443321 1225566777877777654 45678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 025972 213 EAYGAIADCYTELGDLERAARFY 235 (245)
Q Consensus 213 ~a~~~la~~y~~~g~~~~A~~~y 235 (245)
..+..+|..|.+-+++.+|..++
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHH
Confidence 89999999999999999998887
No 261
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=80.19 E-value=3.5 Score=26.16 Aligned_cols=34 Identities=9% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+.....+|+-|...|+|+.|+.+|+.+++....
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3556677899999999999999999999886654
No 262
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=79.97 E-value=5 Score=25.73 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
..+..+...|......|+|++|+.+|.++++....
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34556666778888889999999988888876553
No 263
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.40 E-value=4.8 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 173 KAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.-+...|.-.-..|+|++|+.+|.++++.
T Consensus 12 i~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 12 RKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33555666666677777777777766554
No 264
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=77.74 E-value=6.3 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
.+..+...|.-.-..|+|++|+.+|.++++....
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4455666678888889999999999988886654
No 265
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=77.36 E-value=13 Score=31.04 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025972 156 KAALELAQNVKDPIEEKKAARGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~--g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
++.+=+.=+.++-...+-++.+||..--.. .....++..|.+|+..++..-.+.. ...|..+|..|+..+++.+|..
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H-vYPYtylgGy~yR~~~~reAl~ 317 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH-IYPYTYLGGYYYRKKKYYEAIA 317 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC-ccchhhhhhhhhhcchHHHHHH
Confidence 334434334454444555666666654332 2223388999999998887543332 2346678889999999999999
Q ss_pred HHHHHHHHhh
Q 025972 234 FYDKYISRLE 243 (245)
Q Consensus 234 ~y~~al~~~~ 243 (245)
++..|-+...
T Consensus 318 ~WA~Aa~Vi~ 327 (472)
T 3re2_A 318 SWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 266
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=75.77 E-value=12 Score=31.80 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=57.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 025972 157 AALELAQNVKDPIEEKKAARGLGASLQRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 234 (245)
Q Consensus 157 ~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~--~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~ 234 (245)
+.+-+.-+.+.-...+-++.+||.+--..-. .+.++..|++|+..+++.-.+.. ...|..+|-.+...+++.+|..+
T Consensus 247 ~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h-vYPYtYlgG~~~R~~~~~eAl~~ 325 (489)
T 4gq4_A 247 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQA 325 (489)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc-ccceeecchHHHHhhhHHHHHHH
Confidence 3333333344444455666677766533222 23478899999999887543332 34677889999999999999999
Q ss_pred HHHHHHHhh
Q 025972 235 YDKYISRLE 243 (245)
Q Consensus 235 y~~al~~~~ 243 (245)
|..+-+...
T Consensus 326 wa~aa~Vi~ 334 (489)
T 4gq4_A 326 WADTATVIQ 334 (489)
T ss_dssp HHHHHHHHT
T ss_pred hhhhhhhhh
Confidence 988877654
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.53 E-value=7.7 Score=30.89 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 182 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 182 ~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
..+.|+.++|++.....++- .|.++.....+-..+.-.|++++|.+.++.+.+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34456666666666665555 5656666666666666666666666666555443
No 268
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=73.01 E-value=12 Score=24.42 Aligned_cols=36 Identities=8% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
...+..+...|.-.-..|+|++|+.+|..++++...
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345555666677777777777777777777776543
No 269
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=72.92 E-value=8.8 Score=24.72 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
...+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334555777777788888999999999888766
No 270
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=72.84 E-value=8.7 Score=25.11 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4444667777777888888888888887655
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.80 E-value=27 Score=33.01 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALE-----------------LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 196 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~-----------------l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~ 196 (245)
..+.+|.+|...|++++|..+|++|-. +.+...........|.+....+-..+-|+-++...+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 346789999999999999999987531 111112122233356667777777777777777777
Q ss_pred HHHHHH
Q 025972 197 MVLQIS 202 (245)
Q Consensus 197 ~al~~~ 202 (245)
.||+..
T Consensus 922 lAI~~~ 927 (950)
T 4gq2_M 922 LADASK 927 (950)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 777654
No 272
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=72.66 E-value=13 Score=23.69 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
..+..+...|.-.-..|+|++|+..|..++++.-
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666543
No 273
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.35 E-value=20 Score=27.10 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH
Q 025972 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY 188 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~ 188 (245)
+....+.-.+++|..+..+++|.+|.+++..|+..++..+ ......++..+--+..-+|+.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHHcCCC
Confidence 4455677778899999999999999999999999876532 222334444454455556664
No 274
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=71.41 E-value=20 Score=30.43 Aligned_cols=72 Identities=7% Similarity=-0.040 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 171 EKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~--~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..-++.+||..--..--. ..++..|.+|+..++..-.+.. ...|..+|..|+..+++.+|..++..+-+.+.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H-vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC-ccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 344455555443222111 2378889999888887543332 23466788899999999999999988877654
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.29 E-value=51 Score=31.16 Aligned_cols=70 Identities=10% Similarity=-0.067 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQI-----------------SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~-----------------~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
.+-+|.++...|++++|..+|++|-.- .............|..+...+...+-++-+++..+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 477999999999999999999876311 111111223445788899999999999999999999
Q ss_pred HHHHhhc
Q 025972 238 YISRLES 244 (245)
Q Consensus 238 al~~~~~ 244 (245)
||+..+.
T Consensus 923 AI~~~~~ 929 (950)
T 4gq2_M 923 ADASKET 929 (950)
T ss_dssp HHHTCCS
T ss_pred HHhhccc
Confidence 9987643
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.59 E-value=14 Score=33.14 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=55.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025972 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 217 (245)
Q Consensus 138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~ 217 (245)
+|......+...++...+.+.. ....+... .+ ...+.. .+.||++.|..++.+.-. +........+-
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~e--~~~r~A-lr~~d~~~a~~~~~~l~~------~~~~~~r~~YW 324 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAI---MRSQSTSL-IE--RRVRMA-LGTGDRRGLNTWLARLPM------EAKEKDEWRYW 324 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHH---HTCCCHHH-HH--HHHHHH-HHHTCHHHHHHHHHHSCT------TGGGSHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHhcc---ccCCChHH-HH--HHHHHH-HHCCCHHHHHHHHHHccc------cccccHhHHHH
Confidence 3444444443445555555432 23333322 22 233444 356999999998876321 12345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 025972 218 IADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 218 la~~y~~~g~~~~A~~~y~~al~ 240 (245)
+|+++...|+.++|..+|.++.+
T Consensus 325 ~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 325 QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999999999988764
No 277
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=69.57 E-value=14 Score=27.41 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=36.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 182 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 182 ~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
....|+++.|.+..++. + ....|..+|......|+++-|..+|.++-
T Consensus 15 AL~lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 45679999998876542 1 24578899999999999999999998753
No 278
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=68.85 E-value=25 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Q 025972 182 LQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 182 ~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.-..|+|++|+.+|..+++++..
T Consensus 28 ~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 28 EDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHH
Confidence 34457777777777777776554
No 279
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.44 E-value=8.1 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=14.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHh
Q 025972 221 CYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 221 ~y~~~g~~~~A~~~y~~al~~~ 242 (245)
-....|+|++|+.+|..+++.+
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHH
Confidence 3345567777777777777654
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.35 E-value=11 Score=32.99 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
|...++..+.-+=..|...+.|+.|..+..++. .|.. ......+..++.+|.++..+++|.+|.+++..|++.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334556666677888999999999999988873 3322 223345677888999999999999999999988754
No 281
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.99 E-value=21 Score=24.41 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHHHh
Q 025972 226 GDLERAARFYDKYISRL 242 (245)
Q Consensus 226 g~~~~A~~~y~~al~~~ 242 (245)
|+.+.|+++|++.|..+
T Consensus 36 g~k~~Al~lYk~GI~eL 52 (116)
T 2dl1_A 36 GQKEEAKNYYKQGIGHL 52 (116)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.34 E-value=63 Score=26.18 Aligned_cols=79 Identities=8% Similarity=-0.031 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025972 145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
.|+|=+|-..|+....-+...+........++.-+..+.+.|++..|.+.....++.+++.+...+ ......+..++..
T Consensus 26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAE 104 (312)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Confidence 355556655555544444444444445555555666666667777777766666666666554443 2233444444443
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=57.23 E-value=15 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
.+|..+...|+++.|+.+|-+|+.++.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 466666677777777777777776643
No 284
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=57.06 E-value=90 Score=26.46 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----------------C----------C----------ChHHHHHHHH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----------------V----------K----------DPIEEKKAAR 176 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----------------~----------~----------d~~~~~~a~~ 176 (245)
-...++..+...|+|.+|.-.+..+..+.-+ + . ........+.
T Consensus 13 wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~ 92 (428)
T 2wm9_A 13 WLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLE 92 (428)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHH
Confidence 3446788888899999987766422221110 0 0 0111222344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025972 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
.....+.+-+.|+.|+..++..+..++...|-...+.++..++..|..
T Consensus 93 ~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 93 QCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444555666667778888888888877766655566666666666654
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.47 E-value=45 Score=26.48 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
.....|+.++|++.....++-.|. .......+-..+.-.|+++.|...++.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~------da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455678999999999888887776 6666667778888899999999988877666
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=56.39 E-value=14 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
..+|+.+...|++++|..+|-+|+..+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3678888899999999999999988743
No 287
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.46 E-value=49 Score=31.94 Aligned_cols=69 Identities=10% Similarity=-0.075 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQI-----------------SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~-----------------~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~ 237 (245)
.+-+|.++...|++++|..+|+++-.- ..........+..|..+...+...|.++.+.+.-+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477899999999999999999886311 111111122345677788899999999999999999
Q ss_pred HHHHhh
Q 025972 238 YISRLE 243 (245)
Q Consensus 238 al~~~~ 243 (245)
|++...
T Consensus 925 Ai~~~~ 930 (1139)
T 4fhn_B 925 ADASKE 930 (1139)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 998654
No 288
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=55.03 E-value=25 Score=30.40 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
....-++..+|++|...|++++|.++.+++|+.
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456668888999999999999999999999864
No 289
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=54.44 E-value=44 Score=27.91 Aligned_cols=64 Identities=23% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025972 151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 215 (245)
Q Consensus 151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~ 215 (245)
++..|.+|+..++..-... ...-|..+|-.+++.+++.+|+..+..|-+.....+......+.|
T Consensus 276 ~l~L~~~AI~sa~~yY~n~-HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIY 339 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDH-HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMY 339 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 6677888887776521111 223356677899999999999999999888877655444433443
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=54.41 E-value=80 Score=25.88 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=41.3
Q ss_pred HCCCH---HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025972 144 RNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 220 (245)
Q Consensus 144 ~~g~~---~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~ 220 (245)
..|+| =+|-..|+....-+-..+........++.-+..+.+.|++..|.+...-.++.+++.+-..+. .....+..
T Consensus 24 ~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~ 102 (336)
T 3lpz_A 24 AEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLG 102 (336)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHH
T ss_pred hCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Confidence 34566 444444444333333334444444555555556666666666666666666666655543332 33444444
Q ss_pred HHHHcC
Q 025972 221 CYTELG 226 (245)
Q Consensus 221 ~y~~~g 226 (245)
++....
T Consensus 103 L~~~~~ 108 (336)
T 3lpz_A 103 CLRLFQ 108 (336)
T ss_dssp HHTTSC
T ss_pred HHHhCC
Confidence 444433
No 291
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=54.21 E-value=22 Score=30.54 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....-++..+|++|...|++++|.++.+++++
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45667888999999999999999999998875
No 292
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.89 E-value=27 Score=23.85 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 025972 186 GKYREAIKYHSMVLQISER 204 (245)
Q Consensus 186 g~~~~Ai~~~~~al~~~~~ 204 (245)
|+.++|+.+|+++|.-.++
T Consensus 36 g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 36 GQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7777777777777766554
No 293
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=53.39 E-value=37 Score=28.94 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025972 151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 215 (245)
Q Consensus 151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~ 215 (245)
++..|.+|+..++..-... ...-|..+|-.+++.++|.+|+..+-.+-+.....+......+.|
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~-HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIY 361 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDE-HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIY 361 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHH
Confidence 4667777777666521111 223356778899999999999999999888877655444444443
No 294
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.18 E-value=58 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.+-.+..+..+|.+|.+.|+..+|.+...+|-+
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444456677777788888887777777777654
No 295
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=51.36 E-value=24 Score=30.54 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 025972 149 EKAFTEFKAALELAQNVK 166 (245)
Q Consensus 149 ~~A~~~~~~al~l~~~~~ 166 (245)
++|+.+|++|++....+.
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~ 466 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAA 466 (526)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 555555555555555544
No 296
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=51.17 E-value=29 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
....-++..+|++|...|++++|.++.+++|+.
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 456668888999999999999999999999864
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.51 E-value=41 Score=24.13 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
-...+.-|...|..+...|++++|.+.|+.+++.
T Consensus 97 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 97 GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445677888999999999999999999999874
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.03 E-value=48 Score=24.10 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.0
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
-...+.-|...|..+...|++.+|.+.|+.+++.
T Consensus 92 G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 92 GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455677888899999999999999999998874
No 299
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.84 E-value=48 Score=20.89 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=20.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025972 178 LGASLQRQGKYREAIKYHSMVLQISER 204 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~ 204 (245)
.|.-.-..|+|++|+.+|..+++.+..
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344455679999999999999987554
No 300
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.83 E-value=91 Score=26.72 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHhCC-C---hHHHHHHHHHHHHHHHHcCCH
Q 025972 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL-AQNVK-D---PIEEKKAARGLGASLQRQGKY 188 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~-d---~~~~~~a~~~lg~~~~~~g~~ 188 (245)
-+....+.-.++.|..+..+++|.+|.+++..|+.. ++... . ......++..+--+..-+|+.
T Consensus 214 ~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 214 YQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC
Confidence 466677888889999999999999999999999998 77532 1 122233344444444555654
No 301
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=54.33 E-value=3.7 Score=20.19 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=14.5
Q ss_pred hHHHHHHHhhhhhccChhhh
Q 025972 25 TTTTFLVVNTLMLTTPFKAL 44 (245)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~ 44 (245)
.+.+|++...+|+++|.+..
T Consensus 5 sfsiFlLaLlscLt~Pasa~ 24 (27)
T 2lif_A 5 PFSIFLLALLSCITVPVSAA 24 (27)
Confidence 45667777778898887653
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=48.42 E-value=53 Score=21.32 Aligned_cols=69 Identities=7% Similarity=-0.071 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025972 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d 207 (245)
..|..++..|+|=+|-+.++..-.-.+..........+....|....+.|+. |...+.+++.......+
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~ 74 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC 74 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence 3477888889999999988887764422111112233333444555667887 99999999887665443
No 303
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=47.09 E-value=33 Score=29.32 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
.....-++..+|++|...|++++|.++.+++|+.
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3456678888999999999999999999999864
No 304
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=46.42 E-value=27 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 216 GAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 216 ~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
-.+|..+...|++++|..++-+|+..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 457888889999999999999998765
No 305
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=46.22 E-value=1.4e+02 Score=25.41 Aligned_cols=90 Identities=14% Similarity=0.043 Sum_probs=55.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC----------------hHHHHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 025972 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD----------------PIEEKK-AARGLGASLQRQGKYREAIKYHSM 197 (245)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d----------------~~~~~~-a~~~lg~~~~~~g~~~~Ai~~~~~ 197 (245)
...++..+...++|.+|.-.+...-++..-..+ .....+ .+......+.+-+.|+.|+..|+.
T Consensus 38 l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~ 117 (436)
T 2yin_A 38 LYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKE 117 (436)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345678888888888887665322111110000 011122 244445555667778999999999
Q ss_pred HHHHHHHc-CCcchHHHHHHHHHHHHHH
Q 025972 198 VLQISERE-GEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 198 al~~~~~~-~d~~~~~~a~~~la~~y~~ 224 (245)
.+..++.. .|-...+.++..++.+|..
T Consensus 118 L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 118 LAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888875 6766777777777777764
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.92 E-value=56 Score=25.08 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
-...+.-|...|..+...|++++|...|+.+++.
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4456777888999999999999999999999875
No 307
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=45.85 E-value=56 Score=27.82 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025972 150 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 215 (245)
Q Consensus 150 ~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~ 215 (245)
.+.+.|++|+..++..-... ...-|..+|-.+++.++|.+|+..+.++-+...+.+......+.|
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~-hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiY 346 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDE-HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIY 346 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHH
T ss_pred CHHHHHHHHHHHHHHhcccC-cccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHH
Confidence 35668888888777532111 234466778888999999999999999887776654333333333
No 308
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=45.08 E-value=18 Score=23.46 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQI 201 (245)
Q Consensus 188 ~~~Ai~~~~~al~~ 201 (245)
|++|..+..++|..
T Consensus 13 h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 13 HKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555444
No 309
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=44.75 E-value=44 Score=21.71 Aligned_cols=62 Identities=26% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
.|..+++.|+|=+|-+.++..=.-.. ++... ..-+....|......|+. |...+.+++..++
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~--~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKAT--GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 45677788999999888887654421 11112 222333445555678887 9999999988764
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.44 E-value=56 Score=24.66 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCH
Q 025972 153 TEFKAALELAQNV----KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 228 (245)
Q Consensus 153 ~~~~~al~l~~~~----~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~ 228 (245)
..+++++....+. +|+.. ...+...+..+ ..++..++.+.|.-...- +-....+.-|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RY-LklWl~Ya~~~-~~~~~~~p~~if~~L~~~----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRF-LKIWIWYINLF-LSNNFHESENTFKYMFNK----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHH-HHHHHHHHHHH-STTCHHHHHHHHHHHHHH----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHH-HHHHHHHHHhh-cccccCCHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 4677777766543 23332 23333333322 134466777777764322 22334567788899999999999
Q ss_pred HHHHHHHHHHHHH
Q 025972 229 ERAARFYDKYISR 241 (245)
Q Consensus 229 ~~A~~~y~~al~~ 241 (245)
++|.+.|+.+++.
T Consensus 132 ~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 132 LEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
No 311
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=44.20 E-value=38 Score=22.20 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
....+|..+...|+++.|+.+|-+|+.+++.
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3446899999999999999999999988775
No 312
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=43.75 E-value=64 Score=20.89 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025972 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALE 160 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 160 (245)
..+.+....|.-++..++|.+|...++++..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 3445555555555555555555555555443
No 313
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=43.05 E-value=97 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
.....+.+|..+...++|.+|.+.+.+|++.+.
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 566688899999999999999999999988744
No 314
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=42.66 E-value=1.5e+02 Score=24.70 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHhCCC-------hH---HHHHHHHHHHHHHHHcCCH---
Q 025972 128 KKEELLSRLKTGKNFLRNQ------DLEKAFTEFKAALELAQNVKD-------PI---EEKKAARGLGASLQRQGKY--- 188 (245)
Q Consensus 128 ~~~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al~l~~~~~d-------~~---~~~~a~~~lg~~~~~~g~~--- 188 (245)
.-..+.+++++|..|...+ ....|..+|++|-.+..-+.+ +. ....++..+..+....--+
T Consensus 119 ~fE~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Ka 198 (392)
T 1zb1_A 119 AFEKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKL 198 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888775432 467788888888766543210 11 1222222222221111011
Q ss_pred -----------------HHHHHHHHHHHHHHHHcCCc-------c-----------hHHHHHHHHHHHHHHcCCHHHHHH
Q 025972 189 -----------------REAIKYHSMVLQISEREGEY-------S-----------GSTEAYGAIADCYTELGDLERAAR 233 (245)
Q Consensus 189 -----------------~~Ai~~~~~al~~~~~~~d~-------~-----------~~~~a~~~la~~y~~~g~~~~A~~ 233 (245)
.++-++|.+|.+........ . -.+.+++..|....+.+++.+|+.
T Consensus 199 i~~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa 278 (392)
T 1zb1_A 199 LNDQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIA 278 (392)
T ss_dssp TTSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HhccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 23446788887777654311 1 233456667888888999999999
Q ss_pred HHHHHHHHhh
Q 025972 234 FYDKYISRLE 243 (245)
Q Consensus 234 ~y~~al~~~~ 243 (245)
+++.|.+.+.
T Consensus 279 ~L~~A~~~l~ 288 (392)
T 1zb1_A 279 FLDFSMQQLI 288 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 315
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.60 E-value=1.5e+02 Score=24.69 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD--PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d--~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
.......++..|...|+.++|..+.+++-......++ +......+...+..+...++|.++....-..+....
T Consensus 126 ~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 126 ILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 4556667899999999999999999999988887764 344566677788888899999987777666665443
No 316
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.14 E-value=50 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
....-++..+|++|...|++++|.++.+++|+.
T Consensus 194 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 194 FNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 346668888999999999999999999999875
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.38 E-value=98 Score=22.36 Aligned_cols=73 Identities=5% Similarity=-0.104 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA---RGLGASLQRQGKYREAIKYHSMVLQISEREG 206 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~---~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~ 206 (245)
..+..|..++..|+|=+|-+.++..-.-.+.-.+.......+ ...|....+.|+..-|...+.+++.......
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445678889999999999999988765432211122233333 3445556778999999999999998766543
No 318
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.84 E-value=1.7e+02 Score=25.00 Aligned_cols=69 Identities=12% Similarity=-0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 025972 134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-SE 203 (245)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~-~~ 203 (245)
....+-.+|++.++...+...++.. +-... .-........++.+|..+..+++|.+|.+++..|++. +.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 3335678999999999988877543 22211 1123346677889999999999999999999999988 55
No 319
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=40.70 E-value=1.1e+02 Score=24.03 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQR-QGKYREAIKYHSM 197 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~--d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~~~~ 197 (245)
++..+...|..|...-. -+.|...|++|.+++..+. +|....-++ |.+..|+. .++.++|....++
T Consensus 145 kVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaL-NfSVFyYEiln~~~~Ac~lAk~ 223 (260)
T 2npm_A 145 KVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLAL-NFSVFHYEILNEPRAAIDMAKE 223 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHH-HHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH-HHHHHHHHHcCCHHHHHHHHHH
Confidence 44444456766643322 2466778999999983333 344444444 44555554 8999999999999
Q ss_pred HHHHHHH
Q 025972 198 VLQISER 204 (245)
Q Consensus 198 al~~~~~ 204 (245)
|.+-+-.
T Consensus 224 Afd~Ai~ 230 (260)
T 2npm_A 224 AFEMAIE 230 (260)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8876543
No 320
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=40.51 E-value=1.4e+02 Score=28.77 Aligned_cols=68 Identities=6% Similarity=-0.027 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....++.+=..+.+.|+.++|...+.+--++..+ |-.|+ ..+|+.+-..|.+.|+.++|.+.|++..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445777888899999999999999774433221 11233 45789999999999999999999988754
No 321
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=40.49 E-value=73 Score=20.62 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 224 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~ 224 (245)
+.....-|.-+++.++|.+|+..++++... ..+..-.-.+-..++.|-.+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~---ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL---SDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHH
Confidence 334444566778899999999999999987 44555555555566666543
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.38 E-value=46 Score=24.15 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025972 176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY---GAIADCYTELGDLERAARFYDKYISRLE 243 (245)
Q Consensus 176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~---~~la~~y~~~g~~~~A~~~y~~al~~~~ 243 (245)
..-|..+++.|+|=+|-+.++..=.-.....+.......+ ...|..+...|+..-|...+.+++..+.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456677888999999888887643311110012222333 3445566788999999999999998764
No 323
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=39.87 E-value=37 Score=29.14 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~ 241 (245)
....-++..+|++|...|++++|.++.+++|+.
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 456678888999999999999999999999864
No 324
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=38.25 E-value=1.4e+02 Score=23.09 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQ-RQGKYREAIKYHS 196 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~~-~~g~~~~Ai~~~~ 196 (245)
++..+-..|..|...-. -+.|...|++|.+++.. +. +|....-++ |.+..|+ ..++.++|....+
T Consensus 119 kVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaL-N~SVF~yEil~~~~~A~~lAk 197 (234)
T 2br9_A 119 KVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLAL-NFSVFYYEILNSPDRACRLAK 197 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH-HHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHH-HHHHHHHHHcCCHHHHHHHHH
Confidence 34444456666643322 24677789999999863 43 444444444 4444554 4899999999999
Q ss_pred HHHHHHHH
Q 025972 197 MVLQISER 204 (245)
Q Consensus 197 ~al~~~~~ 204 (245)
+|++-+-.
T Consensus 198 ~afd~Ai~ 205 (234)
T 2br9_A 198 AAFDDAIA 205 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876554
No 325
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=37.95 E-value=98 Score=21.37 Aligned_cols=77 Identities=9% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025972 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 216 (245)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~ 216 (245)
.....|+..+|.+..+...+..-+...+-..+.....- ...--.+..+|.+++++. ++.+|....-.++-
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF------~~~fG~~L~~A~~~~~~y----~~t~d~~~lnqAWd 114 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSF------NQAYGRDLMEAQEWCRKY----MKSGNVKDLTQAWD 114 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH------HHHHHHHHHHHHHHHHHH----HHTCCHHHHHHHHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHH------HHHHhHHHHHHHHHHHHH----HHhCChhHHHHHHH
Confidence 44567778899999998887776666653333333322 222223556676666663 43454433334444
Q ss_pred HHHHHHH
Q 025972 217 AIADCYT 223 (245)
Q Consensus 217 ~la~~y~ 223 (245)
..-.+|.
T Consensus 115 ~Y~~Vf~ 121 (126)
T 2npu_A 115 LYYHVFR 121 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 326
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=37.34 E-value=1.4e+02 Score=23.00 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYT-ELGDLERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~ 241 (245)
-+.|...|++|.++++.. ..+|-......|.+.-|+ -+|+.++|.+.-++|++-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467889999999998752 334544445555555544 589999998887777663
No 327
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=36.52 E-value=1.3e+02 Score=23.73 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHH-hC----CChHHHHHHHHHHHHHHH-HcCCHHHHHH
Q 025972 130 EELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQ-NV----KDPIEEKKAARGLGASLQ-RQGKYREAIK 193 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~-~~----~d~~~~~~a~~~lg~~~~-~~g~~~~Ai~ 193 (245)
.++.-+...|..|...-. -+.|...|++|.+++. .+ .+|.....++ |.+..|+ -+++.++|..
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaL-NfSVFyYEIln~p~~Ac~ 218 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATIL-NYTILKYDLLGNPEGAMK 218 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHH-HHHHHHHTTTCCHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH-HHHHHHHHHcCCHHHHHH
Confidence 344444456777654322 3567778999999885 34 3444444444 4455555 5899999999
Q ss_pred HHHHHHHH
Q 025972 194 YHSMVLQI 201 (245)
Q Consensus 194 ~~~~al~~ 201 (245)
..++|.+-
T Consensus 219 lAk~AFde 226 (268)
T 3efz_A 219 FANRAIQA 226 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999776
No 328
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=34.83 E-value=1.8e+02 Score=23.39 Aligned_cols=111 Identities=11% Similarity=0.007 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHcC
Q 025972 133 LSRLKTGKNFLRNQD---LEKAFTEFKAALELAQN-VKDPIEEKKAARGLGASLQRQGKYR--EAIKYHSMVLQISEREG 206 (245)
Q Consensus 133 ~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~-~~d~~~~~~a~~~lg~~~~~~g~~~--~Ai~~~~~al~~~~~~~ 206 (245)
..++.-|.+-...|- -+-|.++|.+|..++++ +.|+.....+...+...+.+...+. .-...-.++-..+.+.-
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askLL 179 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLL 179 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhcc
Confidence 344444555444444 56778889999999997 8899988888777766666666542 22222234444445555
Q ss_pred CcchHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHhh
Q 025972 207 EYSGSTEAYGAIADCYTE----------LGDLERAARFYDKYISRLE 243 (245)
Q Consensus 207 d~~~~~~a~~~la~~y~~----------~g~~~~A~~~y~~al~~~~ 243 (245)
..|+...+.+.-+.+++. ..|-++..+++++++++++
T Consensus 180 KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~ 226 (298)
T 2r17_C 180 KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIAN 226 (298)
T ss_dssp SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHH
Confidence 678888998888888874 2578899999999998765
No 329
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=33.73 E-value=47 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHHH
Q 025972 146 QDLEKAFTEFKAALE 160 (245)
Q Consensus 146 g~~~~A~~~~~~al~ 160 (245)
|+.+.|+.+|++.+.
T Consensus 33 G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 33 GQKEQAVEWYKKGIE 47 (89)
T ss_dssp SSGGGSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 330
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=32.98 E-value=1.8e+02 Score=22.87 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYT-ELGDLERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~ 241 (245)
-+.|...|++|.+++... ..+|-......|.+.-|+ -+++.++|...-++|++-
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367889999999988642 234544445555555544 479999998877777653
No 331
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.75 E-value=1.7e+02 Score=22.59 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHH-----CCC-----HHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHH-HcCCHHHHHHHH
Q 025972 130 EELLSRLKTGKNFLR-----NQD-----LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQ-RQGKYREAIKYH 195 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~-----~g~-----~~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~~-~~g~~~~Ai~~~ 195 (245)
.++.-+-..|..|.. .|+ -+.|...|++|.+++.. +. +|....-+++ .+..|+ -.++.++|....
T Consensus 121 skVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLN-fSVFyyEiln~~~~Ac~lA 199 (236)
T 3iqu_A 121 SRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALN-FSVFHYEIANSPEEAISLA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH-HHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHH
Confidence 344444456776643 343 35677789999998863 43 4555554444 444544 579999999999
Q ss_pred HHHHHHHHH
Q 025972 196 SMVLQISER 204 (245)
Q Consensus 196 ~~al~~~~~ 204 (245)
++|.+-+-.
T Consensus 200 k~Afd~Ai~ 208 (236)
T 3iqu_A 200 KTTFDEAMA 208 (236)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765543
No 332
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=32.69 E-value=71 Score=27.68 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....-++..+|++|...+++++|.++.+++|+
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999888875
No 333
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=32.55 E-value=1.7e+02 Score=22.47 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHH
Q 025972 186 GKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIAD-CYTELGDLERAARFYDKYISR 241 (245)
Q Consensus 186 g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~-~y~~~g~~~~A~~~y~~al~~ 241 (245)
|+-+.|...|++|.+++.+. ..+|-......|.+. .|.-+++.++|...-++|++.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44555666666666555531 112211222222222 234455666666655555543
No 334
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=31.48 E-value=1.9e+02 Score=22.70 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQ-RQGKYREAIKYHS 196 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~~-~~g~~~~Ai~~~~ 196 (245)
++..+-..|..|...-. -+.|...|++|.+++.. +. +|.....++ |.+..|+ .+++.++|....+
T Consensus 124 kVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaL-NfSVFyYEiln~~~~Ac~lAk 202 (260)
T 1o9d_A 124 KVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLAL-NFSVFYYEILNSPDRACNLAK 202 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH-HHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH-HHHHHHHHHccCHHHHHHHHH
Confidence 34444456766643322 24667789999999863 43 444444444 4455554 4799999999888
Q ss_pred HHHHHHH
Q 025972 197 MVLQISE 203 (245)
Q Consensus 197 ~al~~~~ 203 (245)
+|.+-+-
T Consensus 203 ~Afd~Ai 209 (260)
T 1o9d_A 203 QAFDEAI 209 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 335
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=30.31 E-value=94 Score=21.97 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025972 214 AYGAIADCYTELGDLERAARFYDKYISRL 242 (245)
Q Consensus 214 a~~~la~~y~~~g~~~~A~~~y~~al~~~ 242 (245)
.+...|..|..-|+.+.|.-.|-++..++
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34555677777777777777777666554
No 336
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=29.93 E-value=52 Score=28.30 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
....-++..+|++|...+++++|.++.+++++
T Consensus 177 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 177 PTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556788899999999999999998887764
No 337
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=29.75 E-value=1.1e+02 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240 (245)
Q Consensus 209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~ 240 (245)
.....++..+|++|...+++++|.++.+++|+
T Consensus 195 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 195 ACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44566888899999999999999999999886
No 338
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=29.33 E-value=2.1e+02 Score=22.59 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISEREG----EYSGSTEAYGAIADCYT-ELGDLERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~~----d~~~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~ 241 (245)
-+.|...|++|.+++++.- .+|-......|.+.-|+ -+++.++|...-++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999886422 33444444555555544 689999999999888775
No 339
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.95 E-value=2.1e+02 Score=22.32 Aligned_cols=54 Identities=13% Similarity=-0.044 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y-~~~g~~~~A~~~y~~al~~ 241 (245)
-+.|...|++|.+++... ..+|-......|.+.-| .-+++.++|...-++|++-
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467889999999988742 23454444455555554 4589999998877777653
No 340
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=28.06 E-value=2.1e+02 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025972 172 KKAARGLGASLQRQGKYREAIKYHSMVLQISE 203 (245)
Q Consensus 172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~ 203 (245)
+.+++..|......+++.+|+..++.|.+..+
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~ 284 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKLYA 284 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 55677778888888888888888888877654
No 341
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.88 E-value=2.2e+02 Score=22.32 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYT-ELGDLERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~ 241 (245)
-+.|...|++|.++++.. ..+|-......|.+.-|+ -+|+.++|...-++|++-
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 357889999999998742 334544445555555554 589999998877777653
No 342
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.71 E-value=96 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
...+..-++.+|..+|+|++|+.+.+++|...
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34466678899999999999999999998753
No 343
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=27.39 E-value=2.2e+02 Score=22.27 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYT-ELGDLERAARFYDKYISR 241 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~ 241 (245)
-+.|...|++|.+++ .. ..+|-......|.+.-|+ -+|+.++|.+.-++|++-
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357889999999998 32 223444444555555544 589999998888887764
No 344
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=26.32 E-value=1.4e+02 Score=19.42 Aligned_cols=75 Identities=11% Similarity=0.234 Sum_probs=42.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025972 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218 (245)
Q Consensus 139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l 218 (245)
+..|+..+|.+.-+..++...+....-.++.....-....| .+..+|.+++++ ++++++......++...
T Consensus 17 sr~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG------~~L~~A~~~~~~----y~~t~~~~~l~qAWdiY 86 (94)
T 3fap_B 17 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYG------RDLMEAQEWCRK----YMKSGNVKDLTQAWDLY 86 (94)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHH------HHHHHHHHHHHH----HHHHCCHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------HHHHHHHHHHHH----HHHhCChhhHHHHHHHH
Confidence 46788888888888888887777766444443332222222 244555555555 44455544444444444
Q ss_pred HHHHH
Q 025972 219 ADCYT 223 (245)
Q Consensus 219 a~~y~ 223 (245)
-.+|.
T Consensus 87 ~~V~~ 91 (94)
T 3fap_B 87 YHVFR 91 (94)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 345
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.94 E-value=98 Score=26.63 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
...++.-++.+|..+|+|++|+.+.+++|..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3456667899999999999999999999864
No 346
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=25.30 E-value=15 Score=28.97 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025972 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 164 (245)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 164 (245)
+|....+......|.-.-..|+|++|+..|+.|+++.-.
T Consensus 17 dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 17 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp ---------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444455666667788888888899998888888876654
No 347
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=25.09 E-value=1.6e+02 Score=20.83 Aligned_cols=27 Identities=4% Similarity=-0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025972 175 ARGLGASLQRQGKYREAIKYHSMVLQI 201 (245)
Q Consensus 175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~ 201 (245)
+...|..|...||.+.|.-.|.+-+.+
T Consensus 45 L~r~A~~y~~EGd~E~AYilymRy~~L 71 (144)
T 2a9u_A 45 IFKTAEECRLDRDEERAYVLYMKYVTV 71 (144)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566666666666666666654433
No 348
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.37 E-value=1.3e+02 Score=21.14 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 163 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 163 (245)
.+...+..|.+|...|+.+.|...|-+...+.-
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455666789999999999999999999888774
No 349
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.18 E-value=1.2e+02 Score=25.85 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
...++.-++.+|..+|+|++|+.+.+++|...
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 34566678889999999999999999998753
No 350
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=23.49 E-value=2e+02 Score=20.29 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025972 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 170 (245)
Q Consensus 131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 170 (245)
.+...+..|.+|...||.+.|.-.|-+...+...+..+..
T Consensus 41 sa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpd 80 (144)
T 2a9u_A 41 SALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPD 80 (144)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4456667799999999999999999999888876655444
No 351
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=23.42 E-value=2.9e+02 Score=22.83 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCC-------C-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025972 151 AFTEFKAALELAQNVK-------D-----------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205 (245)
Q Consensus 151 A~~~~~~al~l~~~~~-------d-----------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~ 205 (245)
+..+|++|.+...... + ....+.+++..|......+++.+|+..++.|.+..++.
T Consensus 218 ~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 218 TCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 3456777777666543 1 12244567778888889999999999999998877654
No 352
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=23.18 E-value=62 Score=20.76 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025972 212 TEAYGAIADCYTELGDLERAARFYDKY 238 (245)
Q Consensus 212 ~~a~~~la~~y~~~g~~~~A~~~y~~a 238 (245)
+..|..=|..|.+.||+..|..++.-+
T Consensus 35 A~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 35 IEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566667777777766655443
No 353
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.83 E-value=2.8e+02 Score=21.76 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHHH-cCCHHHHHHH
Q 025972 129 KEELLSRLKTGKNFLRN-----QD-----LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQR-QGKYREAIKY 194 (245)
Q Consensus 129 ~~~~~~~~~~g~~~~~~-----g~-----~~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~ 194 (245)
..++.-+-..|..|... |+ -+.|...|++|.+++.. +. +|.....+++ .+..|+. .++.++|...
T Consensus 143 EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLN-fSVFyYEIln~p~~Ac~L 221 (261)
T 3ubw_A 143 ESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALN-FSVFYYEILNSPDRACRL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH-HHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHH
Confidence 33444444567766443 22 25667789999998853 43 4554554444 4555554 7999999999
Q ss_pred HHHHHHHHHH
Q 025972 195 HSMVLQISER 204 (245)
Q Consensus 195 ~~~al~~~~~ 204 (245)
.++|.+-+-.
T Consensus 222 Ak~AFd~Ai~ 231 (261)
T 3ubw_A 222 AKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998776543
No 354
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=22.77 E-value=2.6e+02 Score=21.41 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025972 132 LLSRLKTGKNFL-----RNQDLEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202 (245)
Q Consensus 132 ~~~~~~~g~~~~-----~~g~~~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~ 202 (245)
+.-+-..|..|. ..|+-+.|...|+.|.+++.. +. +|.....+++.--..|--+++.++|....++|++..
T Consensus 120 VFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 120 FFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 333335666654 356788999999999999875 22 333344444433334456899999999999998874
No 355
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=21.98 E-value=1e+02 Score=27.52 Aligned_cols=92 Identities=15% Similarity=0.004 Sum_probs=59.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHcCCcc----
Q 025972 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ--------ISEREGEYS---- 209 (245)
Q Consensus 142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~--------~~~~~~d~~---- 209 (245)
....|+++.|..++.+.-. +........+-+|.++...|+.++|..+|+++.. -.++.|...
T Consensus 295 Alr~~d~~~a~~~~~~l~~------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~ 368 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPM------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKI 368 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCT------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCC
T ss_pred HHHCCCHHHHHHHHHHccc------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCC
Confidence 4456999999988865322 1122567789999999999999999999988753 112222110
Q ss_pred --------h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025972 210 --------G--STEAYGAIADCYTELGDLERAARFYDKYI 239 (245)
Q Consensus 210 --------~--~~~a~~~la~~y~~~g~~~~A~~~y~~al 239 (245)
. ........+..+...|....|...+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~ 408 (618)
T 1qsa_A 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV 408 (618)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 0 11122344566777888888877666554
No 356
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.39 E-value=1.3e+02 Score=25.64 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025972 171 EKKAARGLGASLQRQGKYREAIKYHSMVLQ 200 (245)
Q Consensus 171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~ 200 (245)
...+..-++.+|..+++|++|..+.++++.
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 445677789999999999999999999975
No 357
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.75 E-value=3e+02 Score=21.37 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHH-HcCCHHHHHHHH
Q 025972 130 EELLSRLKTGKNFLRN-----QD-----LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQ-RQGKYREAIKYH 195 (245)
Q Consensus 130 ~~~~~~~~~g~~~~~~-----g~-----~~~A~~~~~~al~l~~~-~~--d~~~~~~a~~~lg~~~~-~~g~~~~Ai~~~ 195 (245)
.++.-+-..|..|... |+ -+.|...|++|.+++.. +. +|.....+++ .+..|+ -.++.++|....
T Consensus 119 skVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLN-fSVFyYEIln~~~~Ac~lA 197 (248)
T 3uzd_A 119 SKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALN-YSVFYYEIQNAPEQACHLA 197 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH-HHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHH
Confidence 3444444567766443 21 25677789999998863 43 4554554444 455544 489999999999
Q ss_pred HHHHHHHHH
Q 025972 196 SMVLQISER 204 (245)
Q Consensus 196 ~~al~~~~~ 204 (245)
++|.+-+-.
T Consensus 198 k~Afd~Ai~ 206 (248)
T 3uzd_A 198 KTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876654
No 358
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.51 E-value=3e+02 Score=21.22 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 025972 188 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADC-YTELGDLERAARFYDKYIS 240 (245)
Q Consensus 188 ~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~-y~~~g~~~~A~~~y~~al~ 240 (245)
-+.|...|++|.+++... ..+|-......|.+.- |.-+++.++|.+.-++|++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999999988742 2345444445555554 4467999999887777665
Done!