Query 025973
Match_columns 245
No_of_seqs 120 out of 1829
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-33 7.6E-38 234.4 22.9 227 14-244 2-347 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 5.8E-33 1.3E-37 229.0 20.2 163 10-245 102-274 (346)
3 KOG0117 Heterogeneous nuclear 100.0 9.9E-32 2.1E-36 217.4 18.7 224 7-244 75-329 (506)
4 TIGR01645 half-pint poly-U bin 100.0 2.1E-31 4.5E-36 230.8 18.9 170 13-244 105-282 (612)
5 KOG0148 Apoptosis-promoting RN 100.0 2.3E-31 5E-36 202.7 15.4 172 16-245 63-237 (321)
6 KOG4206 Spliceosomal protein s 100.0 5.1E-30 1.1E-34 191.7 18.2 215 10-245 4-221 (221)
7 TIGR01622 SF-CC1 splicing fact 100.0 9.1E-30 2E-34 220.6 21.5 171 12-244 86-264 (457)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.1E-29 4.6E-34 218.5 23.5 220 15-245 96-350 (481)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-29 2.3E-34 219.8 19.5 222 9-244 52-305 (578)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4E-29 8.8E-34 216.7 19.5 194 13-244 273-478 (481)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-28 3E-33 218.0 19.4 179 12-245 175-363 (562)
12 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-28 4.6E-33 216.9 18.6 156 17-243 2-164 (562)
13 KOG0145 RNA-binding protein EL 100.0 5.4E-28 1.2E-32 183.5 18.0 226 12-243 38-355 (360)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.2E-27 7E-32 207.4 21.0 190 11-244 171-373 (509)
15 KOG0144 RNA-binding protein CU 100.0 5.8E-28 1.3E-32 194.9 12.4 162 10-243 29-203 (510)
16 KOG0131 Splicing factor 3b, su 100.0 1.4E-27 2.9E-32 172.2 11.5 161 13-245 7-176 (203)
17 TIGR01622 SF-CC1 splicing fact 99.9 8.6E-26 1.9E-30 195.8 23.3 225 13-243 184-445 (457)
18 KOG0127 Nucleolar protein fibr 99.9 9.6E-27 2.1E-31 192.8 14.8 181 16-243 6-193 (678)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.1E-26 1.3E-30 199.3 20.6 186 13-243 293-499 (509)
20 KOG0127 Nucleolar protein fibr 99.9 2.5E-25 5.4E-30 184.5 19.1 226 14-243 116-375 (678)
21 KOG0109 RNA-binding protein LA 99.9 2.4E-26 5.3E-31 177.0 9.9 145 16-243 3-147 (346)
22 KOG0110 RNA-binding protein (R 99.9 1.6E-23 3.4E-28 178.8 12.4 164 17-244 517-691 (725)
23 KOG0144 RNA-binding protein CU 99.9 6.8E-23 1.5E-27 165.8 13.2 82 14-99 123-209 (510)
24 KOG0123 Polyadenylate-binding 99.9 2.6E-22 5.6E-27 166.7 16.0 147 16-244 2-151 (369)
25 KOG0146 RNA-binding protein ET 99.9 5.5E-22 1.2E-26 151.5 15.3 229 12-244 16-363 (371)
26 KOG1190 Polypyrimidine tract-b 99.9 1.3E-21 2.8E-26 157.4 16.0 217 14-244 149-371 (492)
27 TIGR01645 half-pint poly-U bin 99.9 1.3E-20 2.9E-25 163.9 22.8 80 14-97 203-285 (612)
28 KOG0124 Polypyrimidine tract-b 99.9 2E-22 4.4E-27 160.1 9.1 166 15-242 113-286 (544)
29 KOG0105 Alternative splicing f 99.9 1.7E-20 3.6E-25 136.0 14.8 173 13-234 4-176 (241)
30 KOG0147 Transcriptional coacti 99.9 3.8E-21 8.2E-26 160.2 12.1 220 13-243 276-525 (549)
31 KOG0123 Polyadenylate-binding 99.9 1.3E-20 2.8E-25 156.6 14.2 161 18-245 79-245 (369)
32 KOG1457 RNA binding protein (c 99.8 3.5E-20 7.6E-25 138.1 13.4 218 11-234 30-274 (284)
33 KOG1456 Heterogeneous nuclear 99.8 1E-18 2.3E-23 139.3 19.4 223 10-245 115-362 (494)
34 KOG0110 RNA-binding protein (R 99.8 1.7E-18 3.8E-23 148.2 14.3 208 11-244 381-596 (725)
35 KOG1190 Polypyrimidine tract-b 99.8 2E-17 4.4E-22 133.5 17.3 188 15-244 297-489 (492)
36 KOG0147 Transcriptional coacti 99.8 4.8E-19 1E-23 147.8 7.8 169 15-243 179-355 (549)
37 KOG1548 Transcription elongati 99.8 2.5E-17 5.3E-22 130.4 16.3 196 12-242 131-348 (382)
38 KOG4205 RNA-binding protein mu 99.8 2E-18 4.3E-23 139.0 9.4 161 14-243 5-173 (311)
39 KOG0148 Apoptosis-promoting RN 99.8 4.6E-18 1E-22 130.3 9.7 74 172-245 63-141 (321)
40 PLN03134 glycine-rich RNA-bind 99.7 5.5E-17 1.2E-21 118.1 12.7 75 170-244 33-112 (144)
41 PLN03134 glycine-rich RNA-bind 99.7 3.4E-17 7.3E-22 119.3 10.7 81 12-96 31-114 (144)
42 KOG0106 Alternative splicing f 99.7 5.5E-18 1.2E-22 128.5 6.5 166 16-242 2-167 (216)
43 KOG0124 Polypyrimidine tract-b 99.7 5E-16 1.1E-20 123.9 15.6 81 12-96 207-290 (544)
44 KOG4211 Splicing factor hnRNP- 99.7 4.7E-15 1E-19 122.6 16.2 166 11-241 6-177 (510)
45 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.4E-16 1.4E-20 129.9 10.6 80 13-96 267-349 (352)
46 PF00076 RRM_1: RNA recognitio 99.7 5E-16 1.1E-20 99.4 7.6 68 18-89 1-70 (70)
47 KOG0114 Predicted RNA-binding 99.7 9.5E-16 2.1E-20 100.9 8.6 85 10-98 13-97 (124)
48 PF00076 RRM_1: RNA recognitio 99.6 9.5E-16 2.1E-20 98.1 8.1 66 174-239 1-70 (70)
49 KOG0107 Alternative splicing f 99.6 1.4E-15 2.9E-20 109.7 7.8 75 170-244 9-83 (195)
50 TIGR01648 hnRNP-R-Q heterogene 99.6 2.7E-15 5.9E-20 130.7 11.1 138 12-199 230-369 (578)
51 KOG0107 Alternative splicing f 99.6 1.1E-15 2.4E-20 110.2 6.9 80 13-98 8-87 (195)
52 TIGR01659 sex-lethal sex-letha 99.6 4.8E-15 1E-19 122.8 10.4 78 167-244 103-185 (346)
53 PLN03120 nucleic acid binding 99.6 4.4E-15 9.5E-20 115.7 9.5 76 15-95 4-79 (260)
54 PLN03120 nucleic acid binding 99.6 7.4E-15 1.6E-19 114.5 10.2 73 171-244 4-78 (260)
55 KOG4212 RNA-binding protein hn 99.6 2.5E-13 5.5E-18 111.0 18.1 74 170-243 535-608 (608)
56 PF14259 RRM_6: RNA recognitio 99.6 2.2E-14 4.7E-19 91.9 9.1 66 174-239 1-70 (70)
57 KOG0120 Splicing factor U2AF, 99.6 2.4E-14 5.3E-19 121.1 10.9 182 12-242 286-488 (500)
58 KOG0122 Translation initiation 99.6 1.4E-14 2.9E-19 109.9 8.4 78 15-96 189-269 (270)
59 PF13893 RRM_5: RNA recognitio 99.6 4.3E-14 9.4E-19 86.3 8.9 56 188-243 1-56 (56)
60 KOG0121 Nuclear cap-binding pr 99.6 1.1E-14 2.5E-19 99.6 6.8 73 170-242 35-112 (153)
61 PF14259 RRM_6: RNA recognitio 99.6 3E-14 6.4E-19 91.2 8.3 68 18-89 1-70 (70)
62 KOG0125 Ataxin 2-binding prote 99.6 3.8E-14 8.3E-19 111.7 10.4 72 172-243 97-171 (376)
63 KOG4212 RNA-binding protein hn 99.6 4.7E-13 1E-17 109.4 16.9 217 12-242 41-290 (608)
64 PLN03121 nucleic acid binding 99.5 5.2E-14 1.1E-18 108.0 9.3 77 14-95 4-80 (243)
65 KOG0121 Nuclear cap-binding pr 99.5 2.4E-14 5.3E-19 98.0 6.5 83 12-98 33-118 (153)
66 KOG0114 Predicted RNA-binding 99.5 9.4E-14 2E-18 91.6 8.9 73 170-242 17-91 (124)
67 KOG0125 Ataxin 2-binding prote 99.5 4.1E-14 8.8E-19 111.6 7.9 81 12-96 93-174 (376)
68 COG0724 RNA-binding proteins ( 99.5 1.4E-13 3E-18 111.4 11.5 143 15-207 115-261 (306)
69 KOG1456 Heterogeneous nuclear 99.5 4.8E-13 1E-17 107.3 14.1 172 4-244 20-197 (494)
70 smart00362 RRM_2 RNA recogniti 99.5 2.2E-13 4.8E-18 87.0 9.2 69 173-241 1-72 (72)
71 PLN03121 nucleic acid binding 99.5 2.2E-13 4.7E-18 104.7 10.5 73 170-243 4-78 (243)
72 PLN03213 repressor of silencin 99.5 1.1E-13 2.3E-18 114.8 8.9 80 12-97 7-89 (759)
73 KOG0122 Translation initiation 99.5 5.5E-13 1.2E-17 101.3 11.2 75 170-244 188-267 (270)
74 PLN03213 repressor of silencin 99.5 2.3E-13 5E-18 112.9 10.0 75 170-244 9-86 (759)
75 KOG4206 Spliceosomal protein s 99.5 1.4E-13 3E-18 103.8 7.8 76 170-245 8-89 (221)
76 PF13893 RRM_5: RNA recognitio 99.5 3.2E-13 6.9E-18 82.4 7.5 56 36-93 1-56 (56)
77 smart00362 RRM_2 RNA recogniti 99.5 4.5E-13 9.7E-18 85.5 8.3 70 17-90 1-71 (72)
78 KOG0126 Predicted RNA-binding 99.5 8E-15 1.7E-19 106.4 -0.3 76 14-93 34-112 (219)
79 KOG4207 Predicted splicing fac 99.4 1.5E-13 3.2E-18 101.9 5.8 73 172-244 14-91 (256)
80 KOG0113 U1 small nuclear ribon 99.4 5.3E-13 1.1E-17 104.1 8.8 79 12-94 98-179 (335)
81 KOG0145 RNA-binding protein EL 99.4 1.3E-12 2.7E-17 100.2 10.4 75 170-244 40-119 (360)
82 cd00590 RRM RRM (RNA recogniti 99.4 2.2E-12 4.7E-17 82.8 9.6 70 173-242 1-74 (74)
83 KOG0126 Predicted RNA-binding 99.4 2.8E-14 6E-19 103.6 0.1 73 170-242 34-111 (219)
84 KOG0149 Predicted RNA-binding 99.4 4.7E-13 1E-17 101.2 6.4 75 15-94 12-89 (247)
85 KOG0108 mRNA cleavage and poly 99.4 5.2E-13 1.1E-17 112.4 7.2 79 16-98 19-100 (435)
86 KOG4207 Predicted splicing fac 99.4 5.4E-13 1.2E-17 98.9 6.0 81 10-94 8-91 (256)
87 KOG0130 RNA-binding protein RB 99.4 8.6E-13 1.9E-17 91.3 6.3 74 170-243 71-149 (170)
88 KOG0130 RNA-binding protein RB 99.4 8.4E-13 1.8E-17 91.3 5.7 77 14-94 71-150 (170)
89 smart00360 RRM RNA recognition 99.4 3.1E-12 6.7E-17 81.3 8.0 66 176-241 1-71 (71)
90 KOG0113 U1 small nuclear ribon 99.4 4.8E-12 1E-16 98.8 10.0 75 169-243 99-178 (335)
91 cd00590 RRM RRM (RNA recogniti 99.4 5.9E-12 1.3E-16 80.7 8.7 72 17-92 1-74 (74)
92 KOG0111 Cyclophilin-type pepti 99.4 6.8E-13 1.5E-17 99.2 4.4 81 13-97 8-91 (298)
93 smart00360 RRM RNA recognition 99.3 4.2E-12 9.2E-17 80.6 7.2 67 20-90 1-70 (71)
94 KOG0120 Splicing factor U2AF, 99.3 4.4E-12 9.5E-17 107.6 9.2 188 6-243 166-366 (500)
95 KOG0131 Splicing factor 3b, su 99.3 2.4E-12 5.2E-17 93.7 5.6 75 170-244 8-87 (203)
96 KOG0111 Cyclophilin-type pepti 99.3 1.1E-12 2.5E-17 98.1 4.0 75 170-244 9-88 (298)
97 KOG0105 Alternative splicing f 99.3 3.9E-12 8.5E-17 92.8 6.3 75 170-244 5-81 (241)
98 KOG0117 Heterogeneous nuclear 99.3 6.4E-12 1.4E-16 103.1 7.7 87 3-98 247-333 (506)
99 KOG0108 mRNA cleavage and poly 99.3 9.4E-12 2E-16 104.9 8.0 73 172-244 19-96 (435)
100 COG0724 RNA-binding proteins ( 99.3 2E-11 4.4E-16 98.7 9.7 74 171-244 115-193 (306)
101 KOG0149 Predicted RNA-binding 99.3 8.5E-12 1.8E-16 94.5 6.5 72 171-243 12-88 (247)
102 KOG0112 Large RNA-binding prot 99.3 3.1E-12 6.7E-17 112.9 4.1 159 10-244 367-529 (975)
103 smart00361 RRM_1 RNA recogniti 99.2 4.7E-11 1E-15 76.2 7.8 62 29-90 2-69 (70)
104 KOG0109 RNA-binding protein LA 99.2 1.9E-11 4E-16 95.3 5.6 80 8-96 71-150 (346)
105 smart00361 RRM_1 RNA recogniti 99.2 8.6E-11 1.9E-15 74.9 7.6 57 185-241 2-70 (70)
106 KOG0153 Predicted RNA-binding 99.2 1E-10 2.2E-15 93.3 9.0 77 167-244 224-301 (377)
107 KOG1365 RNA-binding protein Fu 99.2 1.2E-10 2.6E-15 94.0 9.4 181 17-240 163-356 (508)
108 KOG0129 Predicted RNA-binding 99.2 6.6E-10 1.4E-14 93.2 13.7 156 12-227 256-432 (520)
109 KOG0132 RNA polymerase II C-te 99.2 7.5E-11 1.6E-15 102.8 8.2 75 169-244 419-493 (894)
110 PF11608 Limkain-b1: Limkain b 99.1 3.5E-10 7.5E-15 72.1 7.6 75 16-97 3-78 (90)
111 KOG4211 Splicing factor hnRNP- 99.1 4.4E-09 9.5E-14 87.8 15.8 217 13-235 101-347 (510)
112 KOG4454 RNA binding protein (R 99.1 2E-11 4.3E-16 91.4 1.4 143 9-234 3-151 (267)
113 KOG4208 Nucleolar RNA-binding 99.1 3.5E-10 7.6E-15 84.2 7.9 82 11-96 45-130 (214)
114 KOG0415 Predicted peptidyl pro 99.1 1.6E-10 3.5E-15 92.4 5.4 81 12-96 236-319 (479)
115 KOG0415 Predicted peptidyl pro 99.0 4.2E-10 9.1E-15 90.1 6.5 78 167-244 235-317 (479)
116 KOG0146 RNA-binding protein ET 99.0 2.8E-10 6.1E-15 87.8 5.2 83 11-97 281-366 (371)
117 KOG0132 RNA polymerase II C-te 99.0 6.6E-10 1.4E-14 97.1 7.7 77 15-98 421-497 (894)
118 KOG4660 Protein Mei2, essentia 99.0 4.5E-10 9.8E-15 94.9 5.7 179 9-243 69-247 (549)
119 PF04059 RRM_2: RNA recognitio 98.9 1.1E-08 2.3E-13 68.6 9.3 81 15-97 1-88 (97)
120 KOG4660 Protein Mei2, essentia 98.9 1.2E-09 2.6E-14 92.4 5.3 76 164-239 68-143 (549)
121 KOG0153 Predicted RNA-binding 98.9 8E-09 1.7E-13 82.7 7.3 77 12-95 225-302 (377)
122 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.3E-13 75.6 7.8 73 170-242 48-126 (214)
123 KOG4210 Nuclear localization s 98.8 6.4E-09 1.4E-13 84.0 5.8 168 13-244 86-262 (285)
124 KOG0128 RNA-binding protein SA 98.8 3.4E-10 7.3E-15 99.9 -1.9 137 15-241 667-810 (881)
125 KOG4676 Splicing factor, argin 98.8 4.2E-09 9.1E-14 85.5 3.8 194 17-234 9-214 (479)
126 KOG1457 RNA binding protein (c 98.8 1.3E-07 2.7E-12 71.6 11.1 74 171-244 34-116 (284)
127 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.3E-08 2.9E-13 86.4 6.4 80 14-97 404-486 (940)
128 KOG0151 Predicted splicing reg 98.8 3.5E-08 7.6E-13 85.8 9.0 78 167-244 170-255 (877)
129 KOG4307 RNA binding protein RB 98.8 3.7E-08 8.1E-13 85.5 8.9 193 14-242 310-510 (944)
130 KOG4307 RNA binding protein RB 98.8 1.4E-07 3E-12 82.1 12.3 70 173-242 869-943 (944)
131 PF04059 RRM_2: RNA recognitio 98.7 1.2E-07 2.5E-12 63.6 8.8 73 172-244 2-85 (97)
132 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.5E-08 5.4E-13 84.8 6.8 75 170-244 404-483 (940)
133 KOG2193 IGF-II mRNA-binding pr 98.7 1.1E-09 2.5E-14 89.6 -1.5 148 16-242 2-153 (584)
134 KOG0533 RRM motif-containing p 98.7 5.3E-08 1.1E-12 76.1 7.7 79 15-97 83-163 (243)
135 KOG0226 RNA-binding proteins [ 98.7 1.7E-08 3.7E-13 77.6 3.9 70 171-240 190-264 (290)
136 KOG0116 RasGAP SH3 binding pro 98.6 5.7E-08 1.2E-12 81.8 6.1 78 13-95 286-366 (419)
137 KOG0106 Alternative splicing f 98.6 3.8E-08 8.1E-13 75.2 4.0 69 173-244 3-71 (216)
138 KOG0533 RRM motif-containing p 98.6 1.9E-07 4.1E-12 73.0 8.0 72 172-243 84-159 (243)
139 PF11608 Limkain-b1: Limkain b 98.6 3E-07 6.4E-12 58.9 7.2 68 172-244 3-75 (90)
140 KOG1548 Transcription elongati 98.6 2.1E-07 4.4E-12 74.7 7.6 75 170-244 133-219 (382)
141 KOG4205 RNA-binding protein mu 98.6 1.1E-07 2.5E-12 77.1 5.6 81 15-100 97-180 (311)
142 KOG0151 Predicted splicing reg 98.5 1.8E-07 3.9E-12 81.5 6.0 80 12-95 171-256 (877)
143 PF08777 RRM_3: RNA binding mo 98.5 3.4E-07 7.3E-12 62.8 6.2 69 172-241 2-75 (105)
144 KOG0226 RNA-binding proteins [ 98.5 2E-07 4.4E-12 71.8 4.9 75 14-92 189-266 (290)
145 KOG4209 Splicing factor RNPS1, 98.4 7.5E-07 1.6E-11 69.7 6.0 74 170-244 100-178 (231)
146 KOG1365 RNA-binding protein Fu 98.4 2.8E-05 6.1E-10 63.6 14.6 156 13-227 58-225 (508)
147 KOG4209 Splicing factor RNPS1, 98.4 8.8E-07 1.9E-11 69.4 5.9 81 11-96 97-180 (231)
148 KOG4454 RNA binding protein (R 98.4 2.2E-07 4.7E-12 70.1 2.4 73 170-242 8-83 (267)
149 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.6E-11 74.0 6.5 69 173-242 290-363 (419)
150 PF08777 RRM_3: RNA binding mo 98.0 3.3E-05 7.1E-10 53.0 6.7 74 15-95 1-79 (105)
151 KOG2314 Translation initiation 98.0 4.3E-05 9.2E-10 65.5 8.6 83 12-94 55-142 (698)
152 PF08952 DUF1866: Domain of un 97.9 7.6E-05 1.6E-09 53.5 7.4 78 12-95 24-106 (146)
153 COG5175 MOT2 Transcriptional r 97.9 3.7E-05 7.9E-10 61.9 6.2 83 14-96 113-203 (480)
154 KOG1995 Conserved Zn-finger pr 97.9 1.7E-05 3.8E-10 64.3 4.2 77 169-245 64-153 (351)
155 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.0002 4.4E-09 48.4 7.6 70 172-243 7-89 (100)
156 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.0001 2.2E-09 43.8 5.1 52 172-225 2-53 (53)
157 KOG1995 Conserved Zn-finger pr 97.7 4.6E-05 9.9E-10 61.9 4.5 88 6-97 57-155 (351)
158 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3.1E-09 43.2 5.2 52 16-75 2-53 (53)
159 PF08675 RNA_bind: RNA binding 97.7 0.00039 8.4E-09 44.7 7.2 61 10-80 4-64 (87)
160 KOG3152 TBP-binding protein, a 97.6 4.1E-05 8.8E-10 59.4 2.3 67 171-237 74-157 (278)
161 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.0003 6.6E-09 47.6 6.2 75 14-94 5-90 (100)
162 KOG1855 Predicted RNA-binding 97.5 6.3E-05 1.4E-09 62.4 2.8 65 169-233 229-311 (484)
163 KOG2314 Translation initiation 97.5 0.00025 5.4E-09 61.0 6.1 72 170-241 57-139 (698)
164 PF08952 DUF1866: Domain of un 97.5 0.0013 2.8E-08 47.3 8.7 71 168-242 24-103 (146)
165 COG5175 MOT2 Transcriptional r 97.5 0.00042 9.2E-09 56.0 6.6 74 170-243 113-200 (480)
166 KOG4210 Nuclear localization s 97.4 9.5E-05 2.1E-09 60.0 2.9 80 14-98 183-266 (285)
167 KOG2202 U2 snRNP splicing fact 97.4 7.5E-05 1.6E-09 58.1 2.0 58 186-243 83-145 (260)
168 KOG3152 TBP-binding protein, a 97.4 0.00011 2.5E-09 57.0 2.4 69 14-86 73-156 (278)
169 KOG1996 mRNA splicing factor [ 97.3 0.00074 1.6E-08 53.6 6.5 73 170-242 280-363 (378)
170 KOG0112 Large RNA-binding prot 97.3 0.00047 1E-08 62.4 5.5 78 11-95 451-530 (975)
171 KOG0115 RNA-binding protein p5 97.3 0.001 2.2E-08 51.8 6.5 62 172-233 32-97 (275)
172 PF15023 DUF4523: Protein of u 97.2 0.0032 7E-08 44.8 8.2 79 10-94 81-160 (166)
173 KOG2416 Acinus (induces apopto 97.2 0.00042 9E-09 60.0 4.5 78 167-245 440-521 (718)
174 KOG0128 RNA-binding protein SA 97.1 1.8E-05 3.8E-10 70.8 -4.7 161 11-234 567-735 (881)
175 KOG2416 Acinus (induces apopto 97.1 0.00069 1.5E-08 58.7 4.3 84 8-98 437-524 (718)
176 PF08675 RNA_bind: RNA binding 97.0 0.0067 1.5E-07 39.1 7.6 57 170-230 8-64 (87)
177 KOG4676 Splicing factor, argin 97.0 0.0011 2.4E-08 54.7 4.6 69 173-242 9-85 (479)
178 KOG1855 Predicted RNA-binding 97.0 0.00082 1.8E-08 56.0 3.7 67 12-82 228-310 (484)
179 KOG2202 U2 snRNP splicing fact 96.9 0.0007 1.5E-08 52.8 2.7 54 42-95 92-147 (260)
180 KOG0129 Predicted RNA-binding 96.9 0.0034 7.4E-08 53.7 6.9 66 8-77 363-432 (520)
181 PF15023 DUF4523: Protein of u 96.8 0.01 2.2E-07 42.3 7.4 73 169-244 84-160 (166)
182 PF07576 BRAP2: BRCA1-associat 96.6 0.057 1.2E-06 37.3 9.9 79 12-93 9-92 (110)
183 KOG1996 mRNA splicing factor [ 96.5 0.008 1.7E-07 47.9 6.0 69 28-96 295-367 (378)
184 PF10309 DUF2414: Protein of u 96.4 0.024 5.2E-07 34.6 6.6 52 173-228 7-62 (62)
185 PF04847 Calcipressin: Calcipr 96.4 0.013 2.9E-07 44.4 6.6 60 184-244 8-69 (184)
186 KOG4574 RNA-binding protein (c 96.4 0.0058 1.2E-07 55.3 5.0 71 173-244 300-372 (1007)
187 KOG2193 IGF-II mRNA-binding pr 96.3 0.0045 9.8E-08 51.7 3.9 68 173-243 3-73 (584)
188 KOG4849 mRNA cleavage factor I 96.3 0.0056 1.2E-07 49.9 4.1 76 15-92 80-158 (498)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.01 2.2E-07 44.8 4.6 80 12-95 4-97 (176)
190 KOG4285 Mitotic phosphoprotein 96.0 0.042 9.1E-07 44.1 7.8 75 15-98 197-272 (350)
191 PF07576 BRAP2: BRCA1-associat 96.0 0.13 2.8E-06 35.5 9.2 65 170-234 12-80 (110)
192 KOG0115 RNA-binding protein p5 95.9 0.037 8E-07 43.4 6.8 73 16-92 32-110 (275)
193 PF03880 DbpA: DbpA RNA bindin 95.8 0.048 1E-06 34.8 5.9 59 181-243 11-74 (74)
194 PF10309 DUF2414: Protein of u 95.8 0.11 2.5E-06 31.7 7.2 55 16-78 6-62 (62)
195 KOG2253 U1 snRNP complex, subu 95.7 0.019 4.2E-07 50.7 5.2 68 169-240 38-105 (668)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.019 4.2E-07 43.3 4.6 64 171-234 7-81 (176)
197 PF04847 Calcipressin: Calcipr 95.7 0.024 5.2E-07 43.0 4.9 62 31-95 7-70 (184)
198 PF11767 SET_assoc: Histone ly 95.7 0.09 2E-06 32.6 6.6 56 181-240 10-65 (66)
199 KOG0804 Cytoplasmic Zn-finger 95.4 0.065 1.4E-06 45.4 7.0 65 170-234 73-141 (493)
200 KOG0804 Cytoplasmic Zn-finger 95.2 0.1 2.2E-06 44.3 7.5 78 12-93 71-153 (493)
201 KOG2068 MOT2 transcription fac 95.1 0.0071 1.5E-07 49.2 0.5 84 14-98 76-165 (327)
202 KOG2591 c-Mpl binding protein, 94.8 0.063 1.4E-06 46.7 5.2 69 170-240 174-246 (684)
203 PF10567 Nab6_mRNP_bdg: RNA-re 94.2 2.5 5.4E-05 34.2 14.3 85 6-94 6-106 (309)
204 PF11767 SET_assoc: Histone ly 94.2 0.24 5.3E-06 30.7 5.6 55 26-90 11-65 (66)
205 KOG4574 RNA-binding protein (c 94.2 0.034 7.4E-07 50.6 2.4 71 20-97 303-375 (1007)
206 KOG4849 mRNA cleavage factor I 94.0 0.13 2.8E-06 42.3 5.1 68 171-238 80-154 (498)
207 KOG2135 Proteins containing th 93.9 0.034 7.5E-07 47.3 1.9 72 170-243 371-443 (526)
208 KOG4285 Mitotic phosphoprotein 92.5 0.29 6.3E-06 39.5 5.0 62 173-237 199-260 (350)
209 KOG2591 c-Mpl binding protein, 92.1 0.39 8.5E-06 42.0 5.6 67 14-88 174-244 (684)
210 KOG2135 Proteins containing th 90.4 0.17 3.6E-06 43.3 1.8 75 15-97 372-447 (526)
211 PF03880 DbpA: DbpA RNA bindin 90.2 1.8 3.8E-05 27.5 6.1 63 25-93 11-74 (74)
212 PF07292 NID: Nmi/IFP 35 domai 89.7 0.35 7.7E-06 31.8 2.6 24 170-193 51-74 (88)
213 KOG2068 MOT2 transcription fac 89.3 0.11 2.4E-06 42.4 0.0 72 172-243 78-160 (327)
214 KOG2318 Uncharacterized conser 87.9 3.7 8.1E-05 36.4 8.1 67 170-236 173-296 (650)
215 KOG2253 U1 snRNP complex, subu 86.7 0.58 1.3E-05 41.8 2.7 73 10-92 35-107 (668)
216 PF14893 PNMA: PNMA 83.8 1 2.3E-05 37.5 2.9 55 13-68 16-72 (331)
217 PF10567 Nab6_mRNP_bdg: RNA-re 83.2 3.3 7.2E-05 33.5 5.3 73 171-243 15-105 (309)
218 PRK14548 50S ribosomal protein 81.8 6 0.00013 25.8 5.3 56 19-76 24-79 (84)
219 KOG3424 40S ribosomal protein 78.8 9.6 0.00021 26.4 5.6 47 26-73 34-84 (132)
220 KOG2318 Uncharacterized conser 78.4 25 0.00053 31.5 9.3 83 12-94 171-306 (650)
221 TIGR03636 L23_arch archaeal ri 77.6 11 0.00024 24.1 5.4 57 18-76 16-72 (77)
222 KOG4410 5-formyltetrahydrofola 76.5 6.7 0.00015 31.7 5.0 53 11-69 326-378 (396)
223 PF14111 DUF4283: Domain of un 70.5 6.1 0.00013 28.6 3.4 121 17-206 17-140 (153)
224 KOG4019 Calcineurin-mediated s 68.9 5.5 0.00012 29.9 2.8 69 174-243 13-87 (193)
225 PRK01178 rps24e 30S ribosomal 67.5 36 0.00077 23.0 6.6 48 26-74 30-81 (99)
226 KOG4483 Uncharacterized conser 67.1 15 0.00032 31.3 5.2 55 171-227 391-446 (528)
227 PF15513 DUF4651: Domain of un 66.9 23 0.0005 21.6 4.7 24 29-52 4-27 (62)
228 PF03468 XS: XS domain; Inter 66.8 8.2 0.00018 26.9 3.2 48 173-220 10-68 (116)
229 PF07292 NID: Nmi/IFP 35 domai 64.1 1.5 3.3E-05 28.9 -0.8 22 12-33 49-70 (88)
230 KOG4019 Calcineurin-mediated s 62.3 15 0.00033 27.7 4.0 77 17-96 12-90 (193)
231 PF03468 XS: XS domain; Inter 61.3 14 0.00031 25.7 3.6 57 18-79 11-77 (116)
232 KOG1295 Nonsense-mediated deca 60.3 12 0.00027 31.5 3.6 62 173-234 9-78 (376)
233 PTZ00071 40S ribosomal protein 59.5 57 0.0012 23.3 6.3 47 26-73 35-86 (132)
234 cd06404 PB1_aPKC PB1 domain is 56.5 53 0.0011 21.4 8.1 70 16-90 9-80 (83)
235 KOG4410 5-formyltetrahydrofola 54.9 47 0.001 27.0 5.8 48 171-218 330-377 (396)
236 KOG4213 RNA-binding protein La 48.5 10 0.00022 28.5 1.2 65 15-88 111-179 (205)
237 KOG0156 Cytochrome P450 CYP2 s 43.7 55 0.0012 29.1 5.3 66 15-88 32-97 (489)
238 KOG2891 Surface glycoprotein [ 42.0 43 0.00092 27.1 3.8 71 9-83 143-247 (445)
239 KOG2891 Surface glycoprotein [ 40.7 2E+02 0.0043 23.4 8.7 23 183-205 173-195 (445)
240 PF11823 DUF3343: Protein of u 40.4 49 0.0011 20.6 3.4 30 59-88 2-31 (73)
241 PF02714 DUF221: Domain of unk 39.3 41 0.00088 27.9 3.7 35 61-97 1-35 (325)
242 PF13820 Nucleic_acid_bd: Puta 38.8 1.5E+02 0.0033 21.7 6.0 61 17-80 6-67 (149)
243 PF01282 Ribosomal_S24e: Ribos 37.8 1.1E+02 0.0025 19.8 5.8 48 25-73 11-62 (84)
244 KOG2295 C2H2 Zn-finger protein 37.5 5.3 0.00011 35.3 -1.9 68 14-85 230-300 (648)
245 PTZ00191 60S ribosomal protein 36.8 1.4E+02 0.0029 21.8 5.4 53 20-74 86-138 (145)
246 KOG1295 Nonsense-mediated deca 35.9 45 0.00098 28.3 3.3 69 13-84 5-78 (376)
247 PF00403 HMA: Heavy-metal-asso 35.7 95 0.0021 18.2 6.4 54 173-227 1-58 (62)
248 PF03439 Spt5-NGN: Early trans 35.1 89 0.0019 20.2 4.0 34 197-230 33-66 (84)
249 KOG4483 Uncharacterized conser 35.0 99 0.0021 26.6 5.1 54 15-77 391-446 (528)
250 COG0445 GidA Flavin-dependent 34.9 59 0.0013 29.4 4.0 36 14-53 300-335 (621)
251 PRK08559 nusG transcription an 33.3 1.7E+02 0.0037 21.3 5.8 51 28-80 17-68 (153)
252 PHA01632 hypothetical protein 32.2 53 0.0011 19.4 2.2 21 174-194 19-39 (64)
253 PF02829 3H: 3H domain; Inter 31.9 1.6E+02 0.0035 19.8 5.9 51 30-80 8-58 (98)
254 PRK05738 rplW 50S ribosomal pr 30.4 1.6E+02 0.0034 19.5 4.6 32 18-51 22-53 (92)
255 KOG4008 rRNA processing protei 29.7 48 0.001 26.2 2.3 34 169-202 38-71 (261)
256 PRK08559 nusG transcription an 29.2 2E+02 0.0044 20.9 5.6 33 198-230 36-68 (153)
257 PF09707 Cas_Cas2CT1978: CRISP 28.7 1.4E+02 0.0031 19.6 4.1 48 13-66 23-72 (86)
258 smart00738 NGN In Spt5p, this 27.7 1.4E+02 0.0031 19.7 4.3 22 59-80 60-81 (106)
259 PF14026 DUF4242: Protein of u 27.0 1.7E+02 0.0038 18.5 7.1 60 173-233 2-71 (77)
260 PF00564 PB1: PB1 domain; Int 26.5 1.7E+02 0.0037 18.3 5.4 56 21-81 16-72 (84)
261 PF15407 Spo7_2_N: Sporulation 25.8 34 0.00074 21.3 0.8 18 14-31 26-43 (67)
262 cd04889 ACT_PDH-BS-like C-term 25.4 1.4E+02 0.003 17.0 4.8 40 36-75 15-55 (56)
263 PF01071 GARS_A: Phosphoribosy 24.9 2.8E+02 0.0061 21.3 5.8 59 28-91 25-86 (194)
264 KOG4365 Uncharacterized conser 23.9 11 0.00025 32.3 -2.0 71 173-244 5-80 (572)
265 PHA03008 hypothetical protein; 23.7 1.5E+02 0.0032 22.9 3.9 40 170-209 20-59 (234)
266 KOG1205 Predicted dehydrogenas 23.7 1.2E+02 0.0026 24.9 3.8 56 17-76 64-120 (282)
267 COG2004 RPS24A Ribosomal prote 22.7 2.6E+02 0.0057 19.2 6.4 47 26-73 31-81 (107)
268 PRK11558 putative ssRNA endonu 22.0 1.6E+02 0.0035 19.8 3.5 51 13-67 25-75 (97)
269 KOG4008 rRNA processing protei 21.9 67 0.0014 25.4 1.8 35 10-48 35-69 (261)
270 cd06257 DnaJ DnaJ domain or J- 21.8 90 0.002 17.7 2.1 24 20-43 5-28 (55)
271 KOG0156 Cytochrome P450 CYP2 s 20.9 2.1E+02 0.0046 25.5 5.0 60 174-238 35-97 (489)
272 COG5193 LHP1 La protein, small 20.9 52 0.0011 28.2 1.2 64 13-76 172-244 (438)
273 PRK09631 DNA topoisomerase IV 20.8 6.5E+02 0.014 23.5 8.1 60 15-78 220-282 (635)
274 PF09336 Vps4_C: Vps4 C termin 20.6 64 0.0014 19.6 1.2 23 21-44 40-62 (62)
275 PF00276 Ribosomal_L23: Riboso 20.5 88 0.0019 20.6 2.0 27 22-50 26-52 (91)
276 KOG2295 C2H2 Zn-finger protein 20.1 23 0.00049 31.6 -1.1 64 171-234 231-299 (648)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.5e-33 Score=234.37 Aligned_cols=227 Identities=18% Similarity=0.294 Sum_probs=146.8
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
+.++|||+|||.++++++ |+++|+.||+|.+|+++ .+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 2 ~~~~l~V~nLp~~~~e~~----l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEE----IRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 578999999999999999 77999999999998765 36789999999999999999999999999999999999
Q ss_pred EEccccchHhhh----------------------cCCCc-------------------ccchhhhhhhhh---hhhc---
Q 025973 91 QYAKTKSDIIAK----------------------ADGTF-------------------VPRERRKRHEEK---GKKR--- 123 (245)
Q Consensus 91 ~~~~~~~~~~~~----------------------~~~~~-------------------~~~~~~~~~~~~---~~~~--- 123 (245)
.++.+....... .-+.. ............ .+..
T Consensus 78 ~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 78 SYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred EeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 998654421100 00000 000000000000 0000
Q ss_pred -----------cchh----hHhhh---cCCCCc--cccC-----------CC----------------------CCCCCC
Q 025973 124 -----------KDQH----DANQA---GMGLNP--AYAG-----------AY----------------------GATPPL 150 (245)
Q Consensus 124 -----------~~~~----~~~~~---~~~~~~--~~~~-----------~~----------------------~~~~~~ 150 (245)
.... ..... ....+. ..+. .. ..+.+.
T Consensus 158 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T TIGR01661 158 GCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQ 237 (352)
T ss_pred CCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccc
Confidence 0000 00000 000000 0000 00 000000
Q ss_pred -----CCCCC-CCCCC-CC----CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEE
Q 025973 151 -----SQIPY-PGGAK-SV----IPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVE 214 (245)
Q Consensus 151 -----~~~~~-~~~~~-~~----~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~ 214 (245)
...+. ..... .. ........+.+|||+|||..+++++|+++|++||.|.+++++.++ +|||||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 238 QHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred ccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEE
Confidence 00000 00000 00 000011223479999999999999999999999999999999874 7999999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 215 YGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 215 f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
|.+.++|..|+..|||+.|+|++|+|+|+.
T Consensus 318 F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 318 MTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 999999999999999999999999999963
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.8e-33 Score=228.96 Aligned_cols=163 Identities=22% Similarity=0.382 Sum_probs=143.2
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
......++|||+|||.++++++ |+++|+.||.|.+|++. .+++++|||||+|.+.++|.+|++.||+..+.++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~----L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRE----LYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 3455789999999999999999 77999999999988664 4778999999999999999999999999999999
Q ss_pred eEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 87 PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA 166 (245)
Q Consensus 87 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (245)
.|+|.++++....
T Consensus 178 ~i~V~~a~p~~~~------------------------------------------------------------------- 190 (346)
T TIGR01659 178 RLKVSYARPGGES------------------------------------------------------------------- 190 (346)
T ss_pred eeeeecccccccc-------------------------------------------------------------------
Confidence 9999987532110
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEE
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLL 239 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g--~~i~ 239 (245)
...++|||+|||..+|+++|+++|+.||.|..+.++.++ +|+|||+|.+.++|..|++.||+..+.+ ++|.
T Consensus 191 --~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 191 --IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred --cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 123469999999999999999999999999999999864 5899999999999999999999998874 7999
Q ss_pred EEEecC
Q 025973 240 ITYAKK 245 (245)
Q Consensus 240 v~~ak~ 245 (245)
|.||+.
T Consensus 269 V~~a~~ 274 (346)
T TIGR01659 269 VRLAEE 274 (346)
T ss_pred EEECCc
Confidence 999863
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.9e-32 Score=217.41 Aligned_cols=224 Identities=19% Similarity=0.301 Sum_probs=164.7
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
.+.+.++.++.|||+.||.++.|++ |.-+|++.|.|-+++++. +|.+||||||.|.+.+.|++|++.||+..|
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~Ede----LvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDE----LVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchh----hHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 4556678899999999999999999 669999999999998775 689999999999999999999999999998
Q ss_pred C-CceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhc---------------------------cchhhHhhhcCC
Q 025973 84 Y-DKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR---------------------------KDQHDANQAGMG 135 (245)
Q Consensus 84 ~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~ 135 (245)
. |+.|.|+.+..+..... ++....+.+........+- .+.....+++..
T Consensus 151 r~GK~igvc~Svan~RLFi---G~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 151 RPGKLLGVCVSVANCRLFI---GNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred cCCCEeEEEEeeecceeEe---ccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 7 89999988755433211 1111111111111111110 122223333444
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEe
Q 025973 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEY 215 (245)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f 215 (245)
+.+.....||...+..+.-. ...........-+.|||+||+.++|+|.|...|+.||.|.+|+.++ .||||+|
T Consensus 228 l~~g~~klwgn~~tVdWAep----~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r---DYaFVHf 300 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEP----EEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR---DYAFVHF 300 (506)
T ss_pred ccCCceeecCCcceeeccCc----ccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc---ceeEEee
Confidence 44455555555444332211 1111112333557899999999999999999999999999998874 5999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 216 GDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 216 ~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|.+|+..+||+.+.|..|.|.+||
T Consensus 301 ~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 301 AEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred cchHHHHHHHHHhcCceecCceEEEEecC
Confidence 99999999999999999999999999997
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=2.1e-31 Score=230.77 Aligned_cols=170 Identities=21% Similarity=0.336 Sum_probs=141.8
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
...++|||+|||+++++++ |+++|+.||.|.+|.+. .+++++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~----Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDT----IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHH----HHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 4568999999999999999 77999999999998664 4788999999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.+......... .. .. ......
T Consensus 181 V~rp~~~p~a~~-----~~-----~~------------------------------------------------~~~~~~ 202 (612)
T TIGR01645 181 VGRPSNMPQAQP-----II-----DM------------------------------------------------VQEEAK 202 (612)
T ss_pred eccccccccccc-----cc-----cc------------------------------------------------cccccc
Confidence 975322110000 00 00 000011
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||+||+..+++++|+++|+.||.|.++++.+++ +|||||+|.+.++|..|+..|||+.++|+.|+|.+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34579999999999999999999999999999999853 7999999999999999999999999999999999874
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.3e-31 Score=202.68 Aligned_cols=172 Identities=23% Similarity=0.414 Sum_probs=146.5
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEE---EEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
--|||+.|+..++-+. |++-|..||.|.+ |+++.++++|||+||.|.+.++|..||..|||..|.+|.|+-.|
T Consensus 63 fhvfvgdls~eI~~e~----lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEK----LREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred eeEEehhcchhcchHH----HHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 4589999999999999 6699999999987 46667999999999999999999999999999999999999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 025973 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+..+....- + +.. ...+. =....+.++
T Consensus 139 ATRKp~e~n---~-----~~l--tfdeV-------------------------------------------~NQssp~Nt 165 (321)
T KOG0148|consen 139 ATRKPSEMN---G-----KPL--TFDEV-------------------------------------------YNQSSPDNT 165 (321)
T ss_pred cccCccccC---C-----CCc--cHHHH-------------------------------------------hccCCCCCc
Confidence 987752110 0 000 00000 001125788
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
++||+|++..+|+++|++.|++||.|.+|++.+++ ||+||.|.+.|+|..|+.++|++.++|..+++.|.|.
T Consensus 166 sVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 166 SVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred eEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-ceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 99999999999999999999999999999999997 9999999999999999999999999999999999874
No 6
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=191.72 Aligned_cols=215 Identities=50% Similarity=0.820 Sum_probs=173.4
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+..++.+|||.||......++|++.|+.+|++||.|..|...++.+.+|.|||.|.+.+.|..|+..|+|..|+|+.++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 34566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCcccc--CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYA--GAYGATPPLSQIPYPGGAKSVIPEAP 167 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
|.||..++..+....+.+....++...+......++. ..++... .....+.+ .. ...
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~--------~~ng~~~~~~~~~~p~p------------~~-~~~ 142 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPL--------DTNGHFYNMNRMNLPPP------------FL-AQM 142 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcc--------cccccccccccccCCCC------------cc-ccC
Confidence 9999999987777666554444333222221111000 0000000 00111111 11 344
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEecC
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~ak~ 245 (245)
.+++.++++.|||..++.+.|..+|..|...+.|++++.+++.|||+|.+...|..|.+.++|+.+- ...+.|++|+|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~K 221 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAKK 221 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccCC
Confidence 5788999999999999999999999999999999999998899999999999999999999998887 99999999986
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=9.1e-30 Score=220.64 Aligned_cols=171 Identities=22% Similarity=0.409 Sum_probs=142.4
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||..+++++ |.++|+.||.|..|.+.. +++++|||||+|.+.++|.+|+. |+|..+.|+.|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~----l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i 160 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERD----LYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPI 160 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeee
Confidence 45588999999999999999 669999999999987654 67889999999999999999998 99999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++............ . .....
T Consensus 161 ~v~~~~~~~~~~~~~~~------------------------------------~---------------------~~~~~ 183 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAAT------------------------------------H---------------------QPGDI 183 (457)
T ss_pred EEeecchhhhhhhhccc------------------------------------c---------------------cCCCC
Confidence 99875432211000000 0 00001
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+...+|||+|||..+++++|+++|+.||.|..|.++.+. +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 235789999999999999999999999999999999753 689999999999999999999999999999999997
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 264 ~ 264 (457)
T TIGR01622 264 Q 264 (457)
T ss_pred c
Confidence 5
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.1e-29 Score=218.46 Aligned_cols=220 Identities=22% Similarity=0.312 Sum_probs=148.5
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC--ceEEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--KPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g--~~i~v~~ 92 (245)
..+|||+||++.+++++ |+++|+.||.|..|.+.++. .+++|||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus 96 ~~~v~v~nl~~~vt~~~----L~~~F~~~G~V~~v~i~~~~-~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 96 VLRVIVENPMYPITLDV----LYQIFNPYGKVLRIVTFTKN-NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred eEEEEEcCCCCCCCHHH----HHHHHhccCCEEEEEEEecC-CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 34799999999999999 77999999999999776532 34799999999999999999999999975 4899999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhh--------hccchhhHhhhcC----CCCccccCC----------CCCCCCC
Q 025973 93 AKTKSDIIAKADGTFVPRERRKRHEEKGK--------KRKDQHDANQAGM----GLNPAYAGA----------YGATPPL 150 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~~~~~~----------~~~~~~~ 150 (245)
++.........+. +.|+....... ............. .....+... ...+++
T Consensus 171 sk~~~l~v~~~~~-----~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~- 244 (481)
T TIGR01649 171 AKPTRLNVKYNDD-----DSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPP- 244 (481)
T ss_pred ecCCCceeEeccc-----CCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCc-
Confidence 9875543222221 11222211110 0000000000000 000000000 000000
Q ss_pred CCCCC------CCCC----CCCCCCCCCCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHH
Q 025973 151 SQIPY------PGGA----KSVIPEAPAPPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219 (245)
Q Consensus 151 ~~~~~------~~~~----~~~~~~~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~ 219 (245)
...+. ...+ .........+++.+|||+||+. .+|+++|+++|+.||.|.+|+++++++|+|||+|.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~ 324 (481)
T TIGR01649 245 HGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPY 324 (481)
T ss_pred ccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHH
Confidence 00000 0000 0001111234678999999997 79999999999999999999999988899999999999
Q ss_pred HHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 220 QATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 220 ~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
+|..|+..|||..|.|++|+|+++++
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEccc
Confidence 99999999999999999999999864
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.1e-29 Score=219.81 Aligned_cols=222 Identities=20% Similarity=0.309 Sum_probs=146.5
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC-C
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-D 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~-g 85 (245)
...+...++|||+|||.+++|++ |+++|+.||.|.+|+++ .+|+++|||||+|.+.++|.+|++.||+..+. |
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~----L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDE----LVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHH----HHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 34455679999999999999999 77999999999998665 47889999999999999999999999998886 7
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhh-------------------hhhc--------cchhhHhhhcCCCCc
Q 025973 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-------------------GKKR--------KDQHDANQAGMGLNP 138 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~--------~~~~~~~~~~~~~~~ 138 (245)
+.|.|..+......... ++.....+...... .... ++......+...+..
T Consensus 128 r~l~V~~S~~~~rLFVg---NLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 128 RLLGVCISVDNCRLFVG---GIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ccccccccccCceeEee---cCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 77777665432211100 00000000000000 0000 011111111111100
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEecCCCeEEEEEeC
Q 025973 139 AYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF--PGFKEVRMVEAKPGIAFVEYG 216 (245)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~v~l~~~~~g~afv~f~ 216 (245)
.....++..+...... +............++|||+||+..+++++|+++|+.| |.|.+|.++ ++||||+|.
T Consensus 205 gki~l~Gr~I~VdwA~----p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~ 277 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAE----PEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFE 277 (578)
T ss_pred cceEecCceEEEEeec----ccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeC
Confidence 0001111111111000 0000011112345789999999999999999999999 999999876 379999999
Q ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 217 DEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 217 ~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+.++|.+|+..|||..|.|+.|.|+||+
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 9999999999999999999999999996
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=4e-29 Score=216.73 Aligned_cols=194 Identities=19% Similarity=0.369 Sum_probs=145.2
Q ss_pred CCCCeEEEcCCCc-ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 13 SPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 13 ~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++++|||+|||. .+++++ |+++|+.||.|..|.++.+ .+|+|||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~----L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDR----LFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHH----HHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 4788999999997 699999 7799999999999988765 36999999999999999999999999999999999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
+++......... +.... ..... +. +.. ........+. ........+++
T Consensus 347 ~s~~~~~~~~~~-~~~~~-~~~~~--~d--------------------~~~-----~~~~r~~~~~---~~~~~~~~~ps 394 (481)
T TIGR01649 347 PSKQQNVQPPRE-GQLDD-GLTSY--KD--------------------YSS-----SRNHRFKKPG---SANKNNIQPPS 394 (481)
T ss_pred EcccccccCCCC-CcCcC-CCccc--cc--------------------ccC-----CccccCCCcc---cccccccCCCC
Confidence 986553311110 00000 00000 00 000 0000000000 00001123577
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE------EEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ------LLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~--v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~------i~v 240 (245)
.+|||+|||..+++++|+++|+.||. |..+++.+.+ +++|||+|.+.++|..|+..|||+.+.++. |+|
T Consensus 395 ~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv 474 (481)
T TIGR01649 395 ATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKV 474 (481)
T ss_pred cEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEE
Confidence 88999999999999999999999998 8889887754 689999999999999999999999999885 999
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+|||
T Consensus 475 ~fs~ 478 (481)
T TIGR01649 475 SFST 478 (481)
T ss_pred Eecc
Confidence 9997
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.4e-28 Score=218.04 Aligned_cols=179 Identities=22% Similarity=0.370 Sum_probs=145.7
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccC----C
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFY----D 85 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~----g 85 (245)
....++|||+|||.++++++ |+++|+.||.|.++.+.+ +++++|||||.|.+.++|.+|++.||+..+. |
T Consensus 175 ~~~~~~l~V~nl~~~~tee~----L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g 250 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDK----LRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEG 250 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHH----HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccc
Confidence 44567899999999999999 669999999999986654 6778999999999999999999999999999 9
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE 165 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
+.+.|.++..+..+...... ...... . ..
T Consensus 251 ~~l~v~~a~~k~er~~~~~~--------~~~~~~--------~-----------------------------------~~ 279 (562)
T TIGR01628 251 KKLYVGRAQKRAEREAELRR--------KFEELQ--------Q-----------------------------------ER 279 (562)
T ss_pred eeeEeecccChhhhHHHHHh--------hHHhhh--------h-----------------------------------hh
Confidence 99999887665442110000 000000 0 00
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 166 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
.....+.+|||+||+..+++++|+++|+.||.|.+++++.+. +|||||+|.+.++|.+|+..|||..|+|++|.|.
T Consensus 280 ~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 280 KMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred hcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEE
Confidence 001234569999999999999999999999999999998764 6899999999999999999999999999999999
Q ss_pred EecC
Q 025973 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
+|++
T Consensus 360 ~a~~ 363 (562)
T TIGR01628 360 LAQR 363 (562)
T ss_pred eccC
Confidence 9863
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.1e-28 Score=216.89 Aligned_cols=156 Identities=23% Similarity=0.413 Sum_probs=137.4
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
.|||+|||.+++|++ |+++|+.||.|.+|++.+ +++++|||||.|.+.++|.+|+..+|+..+.|+.|+|.|+
T Consensus 2 sl~VgnLp~~vte~~----L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAK----LYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 699999999999999 779999999999987764 5778999999999999999999999999999999999986
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccE
Q 025973 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
....... .....+
T Consensus 78 ~~~~~~~-------------------------------------------------------------------~~~~~~ 90 (562)
T TIGR01628 78 QRDPSLR-------------------------------------------------------------------RSGVGN 90 (562)
T ss_pred ccccccc-------------------------------------------------------------------ccCCCc
Confidence 4321100 012345
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 174 l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
|||+|||..+++++|+++|+.||.|..|++..+. +|||||+|.+.++|..|++.+||..+.|+.|.|...
T Consensus 91 vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 91 IFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred eEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 9999999999999999999999999999998753 689999999999999999999999999999999764
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=183.51 Aligned_cols=226 Identities=19% Similarity=0.320 Sum_probs=154.0
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
....+.|.|.-||..+|++| |+.+|...|.|++|.+.+ +|.+.||+||.|.+++||.+|+..|||..+..++|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE----~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDE----LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred CcccceeeeeecccccCHHH----HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 44567899999999999999 679999999999986554 78899999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhc-----------------------------cchhhHhhhcCCCCcc
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR-----------------------------KDQHDANQAGMGLNPA 139 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 139 (245)
+|.|+++.+..+....- |.+.-.+.....+...- +.......+..+++..
T Consensus 114 KVSyARPSs~~Ik~aNL-YvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 114 KVSYARPSSDSIKDANL-YVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEEeccCChhhhcccce-EEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 99999988775443221 21111111111111000 0000000000000000
Q ss_pred ccCCCC------------------------------CCCCCCCCC--------------CCCCC-----------CCCCC
Q 025973 140 YAGAYG------------------------------ATPPLSQIP--------------YPGGA-----------KSVIP 164 (245)
Q Consensus 140 ~~~~~~------------------------------~~~~~~~~~--------------~~~~~-----------~~~~~ 164 (245)
-+.... .+.|..+.+ ....+ ....+
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp 272 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLP 272 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccC
Confidence 000000 000000000 00000 00011
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 025973 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 165 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~ 239 (245)
. .....-+|||-||.....|.-|+++|.+||.|.+|++++|- ||||||.|.+.++|.+|+..|||..+++|.|.
T Consensus 273 ~-~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 273 G-GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred C-CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 1 11234579999999999999999999999999999999963 79999999999999999999999999999999
Q ss_pred EEEe
Q 025973 240 ITYA 243 (245)
Q Consensus 240 v~~a 243 (245)
|+|-
T Consensus 352 VsFK 355 (360)
T KOG0145|consen 352 VSFK 355 (360)
T ss_pred EEEe
Confidence 9984
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=3.2e-27 Score=207.35 Aligned_cols=190 Identities=16% Similarity=0.233 Sum_probs=134.8
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccC--------CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCc
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFG--------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--------~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~ 82 (245)
.....++|||+|||..+++++|+++|.++|...| .|..+.+ +..+|||||+|.+.++|..|+. |+|..
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 3456789999999999999996655555444333 3444444 3457999999999999999996 99999
Q ss_pred cCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 025973 83 FYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSV 162 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
|.|+.|+|........... .... .. ...+... .. ......
T Consensus 247 ~~g~~l~v~r~~~~~~~~~-~~~~-------------~~----------------~~~~~~~--------~~--~~~~~~ 286 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQ-ITPE-------------VS----------------QKNPDDN--------AK--NVEKLV 286 (509)
T ss_pred eeCceeEecCccccCCccc-cCCC-------------CC----------------CCCCccc--------cc--cccccc
Confidence 9999999865432211000 0000 00 0000000 00 000000
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 025973 163 IPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 163 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~ 237 (245)
..........+|||+|||..+++++|.++|+.||.|..+.++.+. +|||||+|.+.++|..|+..|||..|+|++
T Consensus 287 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 287 NSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 001111244679999999999999999999999999999998752 799999999999999999999999999999
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|.|.+|.
T Consensus 367 l~v~~a~ 373 (509)
T TIGR01642 367 LHVQRAC 373 (509)
T ss_pred EEEEECc
Confidence 9999984
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.8e-28 Score=194.86 Aligned_cols=162 Identities=20% Similarity=0.394 Sum_probs=139.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCcc-CC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF-YD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~-~g 85 (245)
......-++||+-+|..++|.| |+.+|++||.|.+|.+.+ ++.++|||||.|.+.++|.+|+.+||+... .|
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~d----lr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKD----LRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCchhhhheeccCCccccHHH----HHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 3446678999999999999999 669999999999985554 778999999999999999999999988444 34
Q ss_pred --ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 025973 86 --KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVI 163 (245)
Q Consensus 86 --~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (245)
..|.|.|++...+++
T Consensus 105 ~~~pvqvk~Ad~E~er~--------------------------------------------------------------- 121 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERI--------------------------------------------------------------- 121 (510)
T ss_pred CCcceeecccchhhhcc---------------------------------------------------------------
Confidence 489999987655532
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCe-eC--Ce
Q 025973 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLK-IG--QQ 236 (245)
Q Consensus 164 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~-~~--g~ 236 (245)
+..+.|||+-|+..+||.+++.+|++||.|++|.|.++. +|||||.|.+.+.|..|++.|||.. +. ..
T Consensus 122 -----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~ 196 (510)
T KOG0144|consen 122 -----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQ 196 (510)
T ss_pred -----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCC
Confidence 134569999999999999999999999999999999964 8999999999999999999999944 44 77
Q ss_pred EEEEEEe
Q 025973 237 QLLITYA 243 (245)
Q Consensus 237 ~i~v~~a 243 (245)
+|.|.||
T Consensus 197 PLVVkFA 203 (510)
T KOG0144|consen 197 PLVVKFA 203 (510)
T ss_pred ceEEEec
Confidence 8999998
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=172.20 Aligned_cols=161 Identities=24% Similarity=0.396 Sum_probs=138.4
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
-...+|||+||+..++++- |+++|-+.|+|..+++.+ +...+||||++|.+.|+|..|++.||++.++|++|+
T Consensus 7 nqd~tiyvgnld~kvs~~~----l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEEL----LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHH----HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 3468999999999999998 889999999999998776 455789999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.-+...... ..
T Consensus 83 v~kas~~~~n--------------------------------------------------------------------l~ 94 (203)
T KOG0131|consen 83 VNKASAHQKN--------------------------------------------------------------------LD 94 (203)
T ss_pred EEeccccccc--------------------------------------------------------------------cc
Confidence 9876411110 02
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEecC-----CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-v~l~~~-----~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+..|||+||++.+.+..|.+.|+.||.+.. -.++++ .+|+||+.|.+.+.+.+|+..+||..+++++|.|++|
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3456999999999999999999999999744 334442 3689999999999999999999999999999999999
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+|
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 75
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=8.6e-26 Score=195.84 Aligned_cols=225 Identities=18% Similarity=0.312 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
+..++|||+|||..+++++ |.++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 184 p~~~~l~v~nl~~~~te~~----l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQE----LRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCCCEEEEcCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 3478999999999999999 669999999999886653 568899999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhh-hccchhhHhhhcCC------CCccc------c--CCCCCCCCCCC--
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQHDANQAGMG------LNPAY------A--GAYGATPPLSQ-- 152 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~------~--~~~~~~~~~~~-- 152 (245)
|.|+......... ...+.............. .............. .++.. . ...+.......
T Consensus 260 v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (457)
T TIGR01622 260 VGYAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSR 338 (457)
T ss_pred EEEccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccc
Confidence 9997633221110 000000000000000000 00000000000000 00000 0 00000000000
Q ss_pred -----CCCCCCCCCCCCC-CCCCCccEEEEcCCCCCCC----------HHHHHHHhccCCCeeEEEEe-cCCCeEEEEEe
Q 025973 153 -----IPYPGGAKSVIPE-APAPPNNILFVQNVPHDTT----------PMALQMFFSQFPGFKEVRMV-EAKPGIAFVEY 215 (245)
Q Consensus 153 -----~~~~~~~~~~~~~-~~~~~~~~l~v~nl~~~~t----------~~~l~~~f~~~g~v~~v~l~-~~~~g~afv~f 215 (245)
.+.... ....+. ....++.+|+|.||....+ .+||++.|+.||.|..|.+. +...|++||+|
T Consensus 339 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F 417 (457)
T TIGR01622 339 YATGALAIMAR-NSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKF 417 (457)
T ss_pred ccccccccccC-CCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEE
Confidence 000000 011111 1234678899999964443 36899999999999999998 44479999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 216 GDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 216 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|..|+..|||..|+|+.|.+.|.
T Consensus 418 ~~~e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 418 SSVDAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred CCHHHHHHHHHHhcCcccCCeEEEEEEE
Confidence 9999999999999999999999999986
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.6e-27 Score=192.81 Aligned_cols=181 Identities=20% Similarity=0.298 Sum_probs=143.6
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.+|||++||++++.++ |.++|+.+|+|..+.+.. ++.++||+||.|.-.|+++.|+..+++..|.|+.|.|.+
T Consensus 6 ~TlfV~~lp~~~~~~q----L~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQ----LEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP 81 (678)
T ss_pred ceEEEecCCCccchhH----HHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence 8999999999999999 779999999999876554 446799999999999999999999999999999999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 025973 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+..+........+.-. ..+....+. .+ .....+.+..
T Consensus 82 A~~R~r~e~~~~~e~~--~veK~~~q~--------------------------------------~~---~k~~v~~~k~ 118 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENK--AVEKPIEQK--------------------------------------RP---TKAKVDLPKW 118 (678)
T ss_pred ccccccchhcccccch--hhhcccccC--------------------------------------Cc---chhhccCccc
Confidence 8776553211111000 000000000 00 0011112345
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.|+|+|||.++.+.+|..+|+.||.|..|.|+..+ .|||||.|.+..+|..|+..+||..|.||+|-|.||
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 69999999999999999999999999999998743 699999999999999999999999999999999998
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.1e-26 Score=199.27 Aligned_cols=186 Identities=19% Similarity=0.267 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.++|||+|||..+++++ |.++|+.||.|..+.+. .+|.++|||||+|.+.++|..|+..|||..+.|+.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQ----IKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4568999999999999999 66999999999987554 3688999999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.++............. . . . +.... ..............
T Consensus 369 v~~a~~~~~~~~~~~~~------~-----~------------~------~~~~~------------~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 369 VQRACVGANQATIDTSN------G-----M------------A------PVTLL------------AKALSQSILQIGGK 407 (509)
T ss_pred EEECccCCCCCCccccc------c-----c------------c------ccccc------------cccchhhhccccCC
Confidence 99985432110000000 0 0 0 00000 00000000011123
Q ss_pred CccEEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCC
Q 025973 170 PNNILFVQNVPHDT----------TPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSL 231 (245)
Q Consensus 170 ~~~~l~v~nl~~~~----------t~~~l~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~ 231 (245)
++.+|+|.||...- ..++|+++|+.||.|..|.|++.. .|+|||+|.++++|..|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 57889999996321 236899999999999999998641 489999999999999999999999
Q ss_pred eeCCeEEEEEEe
Q 025973 232 KIGQQQLLITYA 243 (245)
Q Consensus 232 ~~~g~~i~v~~a 243 (245)
.|+|+.|.|.|.
T Consensus 488 ~~~gr~v~~~~~ 499 (509)
T TIGR01642 488 KFNDRVVVAAFY 499 (509)
T ss_pred EECCeEEEEEEe
Confidence 999999999985
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=184.46 Aligned_cols=226 Identities=24% Similarity=0.319 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
+.-+|.|+|||..+.+.+ |..+|+.||.|.+|.+.+ +|...|||||+|....+|.+|++.+|+..|.||+|.|.
T Consensus 116 ~k~rLIIRNLPf~~k~~d----Lk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPD----LKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHH----HHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 367899999999999999 669999999999998875 56677999999999999999999999999999999999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhh-hccchh-----hHh---hhcC--CCCccccCCCCCCC----------CC
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQH-----DAN---QAGM--GLNPAYAGAYGATP----------PL 150 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~---~~~~--~~~~~~~~~~~~~~----------~~ 150 (245)
||.++..-.......-...++....+.... ..++-. ... .... +..+......+... ++
T Consensus 192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S 271 (678)
T KOG0127|consen 192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESS 271 (678)
T ss_pred eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccc
Confidence 997654311100000000000000000000 000000 000 0000 00000000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHH
Q 025973 151 SQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAM 225 (245)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~ 225 (245)
+.......+..........-..+|||+|||+.+|+++|.++|+.||.|.+..++.++ +|.|||.|.++.+|+.++
T Consensus 272 ~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 272 GKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred ccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 000000000000001111234789999999999999999999999999999888764 799999999999999999
Q ss_pred HHh-----CC-CeeCCeEEEEEEe
Q 025973 226 QSL-----QS-LKIGQQQLLITYA 243 (245)
Q Consensus 226 ~~l-----~g-~~~~g~~i~v~~a 243 (245)
... .| ..+.||-|.|..|
T Consensus 352 ~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred HhcCccCCCceEEEeccEEeeeec
Confidence 876 23 6678999999876
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=177.02 Aligned_cols=145 Identities=21% Similarity=0.403 Sum_probs=134.1
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
-+|||+|||..+++.+ |+.+|++||.|.+|.+. |+||||..++...|..|+..||+..++|-.|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~e----lr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQE----LRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHH----HHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 3699999999999999 66999999999999876 47999999999999999999999999999999988765
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEE
Q 025973 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
++. .+++|+
T Consensus 74 Ksk-----------------------------------------------------------------------~stkl~ 82 (346)
T KOG0109|consen 74 KSK-----------------------------------------------------------------------ASTKLH 82 (346)
T ss_pred cCC-----------------------------------------------------------------------Cccccc
Confidence 522 456799
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 176 v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
|+|+.+.++.++|+..|++||.|..+.+++ +|+||.|...++|..|++.|+++.|.|++++|+++
T Consensus 83 vgNis~tctn~ElRa~fe~ygpviecdivk---dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 83 VGNISPTCTNQELRAKFEKYGPVIECDIVK---DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred cCCCCccccCHHHhhhhcccCCceeeeeec---ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 999999999999999999999999999984 79999999999999999999999999999999986
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=178.77 Aligned_cols=164 Identities=24% Similarity=0.416 Sum_probs=137.6
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CC----CeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TL----KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~----~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
+|||.||+++++.++ |..+|..+|.|.++.+.. ++ .+.|||||+|.+.++|+.|++.|+|..+.|+.|.|
T Consensus 517 ~lfvkNlnf~Tt~e~----l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLED----LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhhcCCcccchhH----HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 399999999999999 779999999999985443 22 24599999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++..+........ .+....
T Consensus 593 k~S~~k~~~~~gK~------------------------------------------------------------~~~kk~ 612 (725)
T KOG0110|consen 593 KISENKPASTVGKK------------------------------------------------------------KSKKKK 612 (725)
T ss_pred EeccCccccccccc------------------------------------------------------------cccccc
Confidence 99862222111000 000012
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC--C---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA--K---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~--~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.|+|+|||+..+..+++.+|..||.|.+|+|... + +|||||+|-++.+|..|+.+|.++++.||+|.++||+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 457999999999999999999999999999999874 1 6899999999999999999999999999999999996
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.8e-23 Score=165.77 Aligned_cols=82 Identities=20% Similarity=0.432 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcC-CccCCc--eE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDK--PM 88 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~-~~~~g~--~i 88 (245)
..++|||+-|+..++|.| ++++|++||.|++|.+.+ .+.+||||||.|++.|.|..|++.||| ..+.|+ +|
T Consensus 123 ~e~KLFvg~lsK~~te~e----vr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENE----VREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred cchhhhhhhccccccHHH----HHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 478999999999999999 779999999999998776 788999999999999999999999999 566776 99
Q ss_pred EEEEccccchH
Q 025973 89 RIQYAKTKSDI 99 (245)
Q Consensus 89 ~v~~~~~~~~~ 99 (245)
.|.|++++.+.
T Consensus 199 VVkFADtqkdk 209 (510)
T KOG0144|consen 199 VVKFADTQKDK 209 (510)
T ss_pred EEEecccCCCc
Confidence 99999877653
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.6e-22 Score=166.74 Aligned_cols=147 Identities=22% Similarity=0.410 Sum_probs=132.1
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
..|||| +++|+.. |++.|+.+|+|.+|++.++-.+-|||||.|.++++|.+|+..||...+.|+.|+|.|+..
T Consensus 2 ~sl~vg---~~v~e~~----l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAM----LFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHH----HHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468999 9999999 789999999999986665334889999999999999999999999999999999999633
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEE
Q 025973 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
. + ..+|
T Consensus 75 d-------------------------------------------------------------------------~-~~~~ 80 (369)
T KOG0123|consen 75 D-------------------------------------------------------------------------P-SLVF 80 (369)
T ss_pred C-------------------------------------------------------------------------C-ceee
Confidence 2 1 1199
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 176 v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
|.||+..++..+|.++|+.||+|.+|++..+. +|| ||+|.++++|..|+..+||..+.|++|.|..+.
T Consensus 81 i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 81 IKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 99999999999999999999999999999865 789 999999999999999999999999999998764
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.5e-22 Score=151.53 Aligned_cols=229 Identities=20% Similarity=0.344 Sum_probs=151.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCc-cCC--c
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFP-FYD--K 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~-~~g--~ 86 (245)
...+++|||+.|...-+||| ++.+|..||.|.+|.+.+ +|.+||+|||.|.+.-+|..||..|||.. +-| .
T Consensus 16 g~~drklfvgml~kqq~e~d----vrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDD----VRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred CccchhhhhhhhcccccHHH----HHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 33689999999999999999 779999999999997775 88999999999999999999999999944 444 4
Q ss_pred eEEEEEccccchHhhhc-------CCCcccchh-----hhhhhhh---------------hhhc--cch--hh--Hhhhc
Q 025973 87 PMRIQYAKTKSDIIAKA-------DGTFVPRER-----RKRHEEK---------------GKKR--KDQ--HD--ANQAG 133 (245)
Q Consensus 87 ~i~v~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~---------------~~~~--~~~--~~--~~~~~ 133 (245)
.|.|.|++...++..+. -+.+.+... ..+...- .++. ... .+ .....
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 89999998877654321 111111000 0000000 0000 000 00 00000
Q ss_pred CCC-------------Cc---------------------cccCCCCCCCC-----CCCCCCCCCCCCC------------
Q 025973 134 MGL-------------NP---------------------AYAGAYGATPP-----LSQIPYPGGAKSV------------ 162 (245)
Q Consensus 134 ~~~-------------~~---------------------~~~~~~~~~~~-----~~~~~~~~~~~~~------------ 162 (245)
+++ ++ ..+...|.+.+ -+..+++...+..
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence 000 00 00000000000 0011111110000
Q ss_pred ----------------C---------CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEE
Q 025973 163 ----------------I---------PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAF 212 (245)
Q Consensus 163 ----------------~---------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~af 212 (245)
. -..+.+.++.|||..||....+.+|.++|-+||.|.+.++..|+ |=|+|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 0 01133467789999999999999999999999999999888875 56999
Q ss_pred EEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 213 v~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
|.|+++.+|+.|+..|||+.|+-|+|+|++-+
T Consensus 332 VSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred EecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 99999999999999999999999999998753
No 26
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.88 E-value=1.3e-21 Score=157.40 Aligned_cols=217 Identities=25% Similarity=0.333 Sum_probs=156.2
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC-C-ceEEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-D-KPMRIQ 91 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~-g-~~i~v~ 91 (245)
+--+++|.|+-+.++-|. |+++|++||.|..|..... ...-.|+|+|.+.+.|..|...|+|..|+ | ++|+|.
T Consensus 149 ~vLr~iie~m~ypVslDV----LHqvFS~fG~VlKIiTF~K-nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDV----LHQVFSKFGFVLKIITFTK-NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHH----HHHHHhhcceeEEEEEEec-ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 445788999999999999 8899999999999876542 22347999999999999999999998886 4 499999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhc--cchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKR--KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|++....... |.+.++|++++.....- ++..+..+++..- ..+...|.+.. .......+....+....+
T Consensus 224 ~Sklt~LnvK-----ynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~--~~~~~~g~p~a--ip~~~~~a~~a~~~~~~~ 294 (492)
T KOG1190|consen 224 FSKLTDLNVK-----YNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFG--SVPAVHGAPLA--IPSGAAGANAADGKIESP 294 (492)
T ss_pred hhhcccceee-----ccccccccccCCCCCCCccccccchhhhcccc--ccccccCCccc--CCccchhhcccccccccC
Confidence 9876444222 55667777777765433 1112222221111 11111121111 111111111111111111
Q ss_pred -CccEEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 -PNNILFVQNVP-HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 -~~~~l~v~nl~-~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.+|.|.||. ..+|.+.|..+|+.||.|.+|++..+++..|+|+|.+..+|+.|+.+|+|..++|++|+|.++|
T Consensus 295 ~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 295 SANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred CCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 26789999996 8999999999999999999999999988899999999999999999999999999999999987
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=1.3e-20 Score=163.86 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||.++++++ |+++|+.||.|.++++.+ +++++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 203 ~~~rLfVgnLp~~vteed----Lk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETD----IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHH----HHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457999999999999999 669999999999987654 5778999999999999999999999999999999999
Q ss_pred EEccccc
Q 025973 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.++....
T Consensus 279 ~kAi~pP 285 (612)
T TIGR01645 279 GKCVTPP 285 (612)
T ss_pred EecCCCc
Confidence 9987543
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2e-22 Score=160.08 Aligned_cols=166 Identities=22% Similarity=0.349 Sum_probs=136.7
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE---ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
-|+|||+.+++...||. |+.-|..||+|.+|. +.-+++.||||||+|+-+|.|+.|++.|||..+.||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDt----iR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDT----IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHH----HHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 37899999999999999 669999999999984 44589999999999999999999999999999999999997
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
....-.- ... --+....+ ...-
T Consensus 189 rPsNmpQ----AQp------iID~vqee------------------------------------------------Ak~f 210 (544)
T KOG0124|consen 189 RPSNMPQ----AQP------IIDMVQEE------------------------------------------------AKKF 210 (544)
T ss_pred CCCCCcc----cch------HHHHHHHH------------------------------------------------HHhh
Confidence 5321100 000 00000000 0123
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+.|||..+-...+++||+.+|..||.|.+|.|.++. +||||++|.+......|+..||=+.++|.-|+|.-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 569999999999999999999999999999999864 79999999999999999999999999999988854
No 29
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=135.98 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=132.0
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+++|||+|||.++-+.+ |+++|.+||.|.+|.+........||||+|++..+|..|+..-+|..+.|+.|+|++
T Consensus 4 r~~~~iyvGNLP~diReke----ieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKE----IEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhcc----HHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4578999999999999999 779999999999997664333467999999999999999999999999999999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 025973 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+..-.. .....+.+....+-. + ........+.-.+..
T Consensus 80 prggr~-s~~~~G~y~gggrgG-----------------------------g-------------g~gg~rgppsrrSe~ 116 (241)
T KOG0105|consen 80 PRGGRS-SSDRRGSYSGGGRGG-----------------------------G-------------GGGGRRGPPSRRSEY 116 (241)
T ss_pred ccCCCc-ccccccccCCCCCCC-----------------------------C-------------CCCcccCCcccccce
Confidence 865432 111111111111000 0 000000011113456
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
.+.|++||.+-+++||+++...-|.|....+.++ |++.|+|...++..-|+..|....+.
T Consensus 117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhcccccc
Confidence 7999999999999999999999999988888877 58999999999999999999886664
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=3.8e-21 Score=160.22 Aligned_cols=220 Identities=17% Similarity=0.207 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.|-.+|||+||.+.+++++ |+..|+.||.|..|... ++|.++||+||+|.+.++|++|+..|||..+-|+.|+
T Consensus 276 ~p~~rl~vgnLHfNite~~----lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDM----LRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred cchhhhhhcccccCchHHH----HhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 3444599999999999999 77999999999988544 3899999999999999999999999999999999999
Q ss_pred EEEccccchHhhh---------cCCCcccchh---hhhhhhhhhhc-----cchhhHhhhcCCCCccccCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAK---------ADGTFVPRER---RKRHEEKGKKR-----KDQHDANQAGMGLNPAYAGAYGATPPLSQ 152 (245)
Q Consensus 90 v~~~~~~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
|............ .+....+... .+....-.... ..+.........+........+... ..
T Consensus 352 V~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~-~~- 429 (549)
T KOG0147|consen 352 VSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRV-RS- 429 (549)
T ss_pred EEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCc-cc-
Confidence 9875433221100 0111111110 00000000000 0000000001111111111111110 00
Q ss_pred CCCCCCCCCCCCCCCCCCccEEEEcCCC--CCCC--------HHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHH
Q 025973 153 IPYPGGAKSVIPEAPAPPNNILFVQNVP--HDTT--------PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222 (245)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~~t--------~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~ 222 (245)
..+.. ..+ ....++.++.++|+= ...| .+|+.+.+..||+|..|.+.++..|+.||.|.+.+.|.
T Consensus 430 -~~p~~---~~p-~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~ 504 (549)
T KOG0147|consen 430 -VDPAD---ASP-AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAG 504 (549)
T ss_pred -cCccc---ccc-ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHH
Confidence 00110 111 122577789999993 2222 37788999999999999999988899999999999999
Q ss_pred HHHHHhCCCeeCCeEEEEEEe
Q 025973 223 VAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 223 ~A~~~l~g~~~~g~~i~v~~a 243 (245)
.|+..|||.+|.||.|.+.|-
T Consensus 505 ~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 505 TAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHhhhhhccceeEEEEe
Confidence 999999999999999999883
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.3e-20 Score=156.64 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=138.6
Q ss_pred EEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025973 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
|||.||+++++.++ |++.|+.||.|++|++.. .| ++|| ||+|.+.+.|++|++.+||..+.|+.|.|.....
T Consensus 79 ~~i~nl~~~~~~~~----~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKS----LYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHH----HHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999 889999999999997664 45 8999 9999999999999999999999999999988766
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEE
Q 025973 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
+..+...... ....-+.++
T Consensus 153 ~~er~~~~~~-------------------------------------------------------------~~~~~t~v~ 171 (369)
T KOG0123|consen 153 KEEREAPLGE-------------------------------------------------------------YKKRFTNVY 171 (369)
T ss_pred hhhhcccccc-------------------------------------------------------------hhhhhhhhh
Confidence 6553221000 001123489
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 176 v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
+.|++..++++.|.++|+.||.|..+.++++. ++|+||.|.++++|..|+..|++..++++.+.|..|.+
T Consensus 172 vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 172 VKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999999999999999999999999999853 68999999999999999999999999999999988753
No 32
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.85 E-value=3.5e-20 Score=138.14 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=135.6
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCC----eeeEEEEEecCHHHHHHHHHHHcCCccC--
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK----HKGQAWLVFKDVASATAAVEKMQGFPFY-- 84 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~----~kg~afV~F~~~~~A~~a~~~l~~~~~~-- 84 (245)
...+-++|||.+||.++...| |+.+|..|-..+...+.-+++ .+.+||+.|.+..+|..|+.+|||+.|.
T Consensus 30 ~~~~VRTLFVSGLP~DvKpRE----iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPRE----IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred cccccceeeeccCCcccCHHH----HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 344579999999999999999 889999997777665554443 4589999999999999999999999997
Q ss_pred -CceEEEEEccccchHhhhcCCCc------ccchhhhhhhhhhhhccchhhHhhh-cCCCCcc---------ccCCC-CC
Q 025973 85 -DKPMRIQYAKTKSDIIAKADGTF------VPRERRKRHEEKGKKRKDQHDANQA-GMGLNPA---------YAGAY-GA 146 (245)
Q Consensus 85 -g~~i~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~-~~ 146 (245)
+.+|+|++++..........+.- .....+....++. ....+..... ...+.++ ..... ..
T Consensus 106 ~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~s--a~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l 183 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKS--ADDQHDEGLSDPDELQEPGNADALKENDTTKSEAL 183 (284)
T ss_pred cCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhccc--chhhccccccCccccCCccccccCCCccccchhhh
Confidence 77999999987665433222221 0000000000000 0001111000 0000000 00000 00
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-CeEEEEEeCCHHHHHH
Q 025973 147 TPPLSQIPYPGGA--KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDEMQATV 223 (245)
Q Consensus 147 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-~g~afv~f~~~~~A~~ 223 (245)
..+-.+.|..... .+...........+|||-||..+++|++|+.+|+.|-.+...+|.... .-.||++|.+.+.|..
T Consensus 184 ~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 184 SAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATD 263 (284)
T ss_pred hhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHH
Confidence 0000000000000 000111222345579999999999999999999999887766665422 3489999999999999
Q ss_pred HHHHhCCCeeC
Q 025973 224 AMQSLQSLKIG 234 (245)
Q Consensus 224 A~~~l~g~~~~ 234 (245)
|+.+|+|..+-
T Consensus 264 am~~lqg~~~s 274 (284)
T KOG1457|consen 264 AMNHLQGNLLS 274 (284)
T ss_pred HHHHhhcceec
Confidence 99999998774
No 33
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.83 E-value=1e-18 Score=139.35 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=154.3
Q ss_pred CCCCCCCeEEEcCCC--cccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccC-C
Q 025973 10 NEISPNNTIYINNLN--EKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFY-D 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp--~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~-g 85 (245)
+...++..|.++=|. +.+|-|. |+.++...|.|+.|.+++ +| =.|.|+|++.+.|++|.+.|||-.|+ |
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDV----ly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDV----LYTICNPQGKVLRIVIFKKNG---VQAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhh----hhhhcCCCCceEEEEEEeccc---eeeEEeechhHHHHHHHhhccccccccc
Confidence 345567777766554 6778888 889999999999987664 33 48999999999999999999998887 4
Q ss_pred -ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhc--------cchhhHhhhcCCC---Cc---cccCCCCCCCCC
Q 025973 86 -KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR--------KDQHDANQAGMGL---NP---AYAGAYGATPPL 150 (245)
Q Consensus 86 -~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~---~~~~~~~~~~~~ 150 (245)
++|+|+|+++......+.+... |+++....+.. +...++....... .. .+.... ...+.
T Consensus 188 CCTLKIeyAkP~rlnV~knd~Dt-----wDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~-~~~p~ 261 (494)
T KOG1456|consen 188 CCTLKIEYAKPTRLNVQKNDKDT-----WDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGD-RHGPP 261 (494)
T ss_pred ceeEEEEecCcceeeeeecCCcc-----ccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccc-cCCCC
Confidence 4999999999877554443332 33333332111 1111111111100 00 011100 00111
Q ss_pred CCCCCC--CCC---CCCCCCCCCCCccEEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHH
Q 025973 151 SQIPYP--GGA---KSVIPEAPAPPNNILFVQNVP-HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224 (245)
Q Consensus 151 ~~~~~~--~~~---~~~~~~~~~~~~~~l~v~nl~-~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A 224 (245)
...|.+ ... ....+.....++.++.|.+|. ..++.+.|.++|..||+|.+|++++.+.|.|+|++.|+.+.++|
T Consensus 262 ~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 262 HPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHH
Confidence 111110 000 001112344678899999998 67889999999999999999999999999999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEEecC
Q 025973 225 MQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 225 ~~~l~g~~~~g~~i~v~~ak~ 245 (245)
+.+||+..+.|.+|.|+++||
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred HHHhccCccccceEEEeeccc
Confidence 999999999999999999987
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=148.21 Aligned_cols=208 Identities=21% Similarity=0.267 Sum_probs=140.3
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
.....+.++|+|||..+..++ |...|..||.|..|.+.+.| -.|+|+|.+..+|++|++.|....+...++.+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~e----lt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEE----LTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred hhhhcceeeeccCccccccHH----HHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 345678999999999999999 77999999999999776554 36999999999999999999999888889988
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.|+.............+............ .+ ......+.... ...+....+...........
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~---~E--------------r~s~~d~~v~e-D~d~te~ss~a~~a~~~~~~ 515 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENP---SE--------------RVSAEDGQVEE-DKDPTEESSLARVAEDEETE 515 (725)
T ss_pred ccChhhhccCCccccccccccccccccCc---ce--------------ecccccccccc-cCCccccccchhhhhccccc
Confidence 88754332100000000000000000000 00 00000000000 00000000000011111112
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+ .||++||+..+|.++|..+|+.+|.|..+.|...+ .|||||+|.++++|..|++.|+|+.+.|+.|.|++
T Consensus 516 t-~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 T-KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred h-hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 2 29999999999999999999999999998887633 39999999999999999999999999999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 75
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.78 E-value=2e-17 Score=133.45 Aligned_cols=188 Identities=21% Similarity=0.339 Sum_probs=143.2
Q ss_pred CCeEEEcCCC-cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp-~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
++.|.|.||- ..+|.+. |..+|+.||.|..|.+..+.+ -.|+|++.+...|..|++.|+|..++|+.|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~----LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDV----LFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhH----HHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 6889999987 4678888 889999999999998876543 57999999999999999999999999999999999
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCc
Q 025973 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGG--AKSVIPEAPAPPN 171 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 171 (245)
+........+... .+..+... ...+.+.. +.+.......|++
T Consensus 371 KH~~vqlp~egq~-----d~glT~dy-------------------------------~~spLhrfkkpgsKN~~ni~Pps 414 (492)
T KOG1190|consen 371 KHTNVQLPREGQE-----DQGLTKDY-------------------------------GNSPLHRFKKPGSKNYQNIFPPS 414 (492)
T ss_pred cCccccCCCCCCc-----cccccccC-------------------------------CCCchhhccCcccccccccCCch
Confidence 8765533321110 01100000 00111111 1122233455788
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~ak 244 (245)
.+|++.|+|.+++|++++..|..-|.. +-.++....+.+|++.+.+.|+|..|+-.++.+.++ +..|+|+|+|
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 899999999999999999999988764 666666543459999999999999999999999998 6699999987
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=4.8e-19 Score=147.79 Aligned_cols=169 Identities=18% Similarity=0.346 Sum_probs=136.3
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++||+--|+...++-+ |+++|+.+|.|..|++. .++.++|.|||+|.+.++...|+. |.|..+.|-+|.|.
T Consensus 179 ~Rtvf~~qla~r~~pRd----L~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRD----LEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchh----HHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 57888888898999999 88999999999887554 367789999999999999999997 99999999999998
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
.+............. ........+-
T Consensus 254 ~sEaeknr~a~~s~a-------------------------------------------------------~~~k~~~~p~ 278 (549)
T KOG0147|consen 254 LSEAEKNRAANASPA-------------------------------------------------------LQGKGFTGPM 278 (549)
T ss_pred ccHHHHHHHHhcccc-------------------------------------------------------ccccccccch
Confidence 754332211000000 0000001122
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
..|||+||-+++++++|+.+|.+||.|..|.+..+. +||||++|.+.++|..|+..|||+.+.|+.|+|+..
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 229999999999999999999999999999999873 799999999999999999999999999999999753
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=2.5e-17 Score=130.39 Aligned_cols=196 Identities=16% Similarity=0.245 Sum_probs=137.2
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--------EEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
+..++.|||.|||.++|-++ +.++|+.+|.|.. |.+. ..|+.||=|++.|-..++...|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE----~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDE----FAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHH----HHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcc
Confidence 44577899999999999999 7799999998875 4333 36889999999999999999999999999
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025973 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.+.|+.|+|+.|+-+... .+...++.........+ -...+.... ...|..
T Consensus 207 ~~rg~~~rVerAkfq~Kg------e~~~~~k~k~k~~~~kk-~~k~q~k~~------------------dw~pd~----- 256 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQMKG------EYDASKKEKGKCKDKKK-LKKQQQKLL------------------DWRPDR----- 256 (382)
T ss_pred cccCcEEEEehhhhhhcc------CcCcccccccccccHHH-HHHHHHhhc------------------ccCCCc-----
Confidence 999999999998644331 11111111000000000 000000000 000000
Q ss_pred CCCCCCCCCccEEEEcCCC----CCCC-------HHHHHHHhccCCCeeEEEEec-CCCeEEEEEeCCHHHHHHHHHHhC
Q 025973 162 VIPEAPAPPNNILFVQNVP----HDTT-------PMALQMFFSQFPGFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~----~~~t-------~~~l~~~f~~~g~v~~v~l~~-~~~g~afv~f~~~~~A~~A~~~l~ 229 (245)
.........++|+++|+= ...+ +++|..-++.||.|.+|.+.. .+.|.+-|.|.+.++|..+++.|+
T Consensus 257 -~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 257 -DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred -cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhc
Confidence 011122356789999983 2333 566778899999999998874 346999999999999999999999
Q ss_pred CCeeCCeEEEEEE
Q 025973 230 SLKIGQQQLLITY 242 (245)
Q Consensus 230 g~~~~g~~i~v~~ 242 (245)
|..|+||.|..+.
T Consensus 336 GR~fdgRql~A~i 348 (382)
T KOG1548|consen 336 GRWFDGRQLTASI 348 (382)
T ss_pred CeeecceEEEEEE
Confidence 9999999998764
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=2e-18 Score=138.97 Aligned_cols=161 Identities=18% Similarity=0.321 Sum_probs=134.8
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||++|+.+++++. |+..|++||.|.++.+++ +++++||+||.|.+.+....++. .....+.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~----Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEES----LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHH----HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 679999999999999999 668999999999976554 78899999999999999999888 5667888999888
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
..+.+......- .....
T Consensus 80 k~av~r~~~~~~---------------------------------------------------------------~~~~~ 96 (311)
T KOG4205|consen 80 KRAVSREDQTKV---------------------------------------------------------------GRHLR 96 (311)
T ss_pred eeccCccccccc---------------------------------------------------------------ccccc
Confidence 777655431110 00014
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
...|||+.||..++++++++.|.+||.|..+.++.+. +||+||.|.+++...+++. ..-+.|.|+++.|..|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 5679999999999999999999999999888888764 7999999999999998886 5678899999999876
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.6e-18 Score=130.33 Aligned_cols=74 Identities=18% Similarity=0.370 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.-+||+.|...++-++|++.|.+||+|.+.++++|. ||||||.|.+.++|..|++.|||.+|++|.|+--||-|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 349999999999999999999999999999999973 89999999999999999999999999999999999754
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=5.5e-17 Score=118.15 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+|.++++|..|++.||+..|.|++|+|.+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45679999999999999999999999999999998763 6999999999999999999999999999999999986
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.4e-17 Score=119.26 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
-..+++|||+|||.++++++ |+++|+.||.|..|.+. .+++++|||||+|.+.++|..|+..||+..+.|+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDAS----LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHH----HHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45588999999999999999 67999999999987554 477899999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.++..+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 99998654
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=5.5e-18 Score=128.52 Aligned_cols=166 Identities=21% Similarity=0.299 Sum_probs=129.2
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
..+||++||+.+.+.+ |+.+|..||.+..+.+. .||+||+|.+..+|..|+..+|+..|.|-.+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d----~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERD----VERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhH----HHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4799999999999999 77999999999988665 37999999999999999999999999998899999864
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEE
Q 025973 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
..... +.-....+... .............++
T Consensus 73 ~~~~~----g~~~~g~r~~~---------------------------------------------~~~~~~p~~s~~r~~ 103 (216)
T KOG0106|consen 73 KRRGR----GRPRGGDRRSD---------------------------------------------SRRYRPPSRTHFRLI 103 (216)
T ss_pred ccccc----CCCCCCCccch---------------------------------------------hhccCCcccccceee
Confidence 32211 00000000000 000000112456799
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 176 v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
|.|+...+.+.+|.++|+++|.+....+ ..+++||+|.+.++|..|+..++|..+.++.|.+..
T Consensus 104 ~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 104 VRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999999999999844433 358999999999999999999999999999998743
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=5e-16 Score=123.94 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...-.+|||..+.++.+|+||+ .+|+.||.|..|.+-+ .+..|||+|++|.+..+-..|+..||-..+.|..+
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiK----SVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIK----SVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHhhheEEeeecCCCccHHHHH----HHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 3446899999999999999955 9999999999996654 45679999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.-+..-
T Consensus 283 RVGk~vTP 290 (544)
T KOG0124|consen 283 RVGKCVTP 290 (544)
T ss_pred ecccccCC
Confidence 99876543
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=4.7e-15 Score=122.64 Aligned_cols=166 Identities=13% Similarity=0.173 Sum_probs=125.9
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.......|-+++||-++|++| |.++|+.+ .|..+.+.+ +|+..|-|||+|.+.|++.+|++ .+...+..|-|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~e----i~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIE 79 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKE----ILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIE 79 (510)
T ss_pred CCCcceEEEecCCCccccHHH----HHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEE
Confidence 345567899999999999999 66999988 577766555 69999999999999999999999 788889999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.-+........- +. .......
T Consensus 80 Vf~~~~~e~d~~~---------------~~-------------------------------------------~g~~s~~ 101 (510)
T KOG4211|consen 80 VFTAGGAEADWVM---------------RP-------------------------------------------GGPNSSA 101 (510)
T ss_pred EEccCCccccccc---------------cC-------------------------------------------CCCCCCC
Confidence 9776544331100 00 0000002
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
...+|-+++||..||++||.+||+..-.|.. |.+..+. .|-|||.|++.+.|+.||. -|...|+-+=|.|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 4567999999999999999999998755544 4444443 6899999999999999998 46666766666553
No 45
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=6.4e-16 Score=129.87 Aligned_cols=80 Identities=18% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
..+.+|||+|||.++++++ |+++|++||.|.++++.. ++.++|||||+|.+.++|..|+..|||..+.|+.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~----L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETV----LWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455799999999999999 779999999999986553 788999999999999999999999999999999999
Q ss_pred EEEcccc
Q 025973 90 IQYAKTK 96 (245)
Q Consensus 90 v~~~~~~ 96 (245)
|.|...+
T Consensus 343 V~~~~~~ 349 (352)
T TIGR01661 343 VSFKTNK 349 (352)
T ss_pred EEEccCC
Confidence 9998665
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5e-16 Score=99.42 Aligned_cols=68 Identities=31% Similarity=0.536 Sum_probs=62.7
Q ss_pred EEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
|||+|||.++++++ |+++|+.||.|..+.+.. ++..+++|||+|.+.++|..|++.|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~----l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEE----LRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHH----HHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHH----HHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999 669999999998886665 578899999999999999999999999999999885
No 47
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=9.5e-16 Score=100.92 Aligned_cols=85 Identities=24% Similarity=0.441 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
=+++.++.|||+|||+++|.++ ++++|..||.|..|++-.+...+|.|||.|++..+|.+|+.+|+|..+.++.+.
T Consensus 13 lppevnriLyirNLp~~ITsee----mydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEE----MYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHH----HHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 3466789999999999999999 889999999999999988888899999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.+..+...
T Consensus 89 vlyyq~~~~ 97 (124)
T KOG0114|consen 89 VLYYQPEDA 97 (124)
T ss_pred EEecCHHHH
Confidence 999866543
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=9.5e-16 Score=98.10 Aligned_cols=66 Identities=35% Similarity=0.584 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC----CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 025973 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 174 l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~----~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~ 239 (245)
|||+|||..+++++|+++|+.||.|..+.+..+ .+++|||+|.+.++|..|++.+||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 268999999999999999999999999999985
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.4e-15 Score=109.73 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+.|||+||+..+++.+|..+|..||.+..|.+...+.|||||+|.++.+|..|+..|+|..|.|..|.|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 356799999999999999999999999999999999889999999999999999999999999999999999864
No 50
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=2.7e-15 Score=130.68 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=99.7
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhccc--CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF--GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~--G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....++|||+|||.++++++ |+++|+.| |.|..|... ++||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 230 ~~~~k~LfVgNL~~~~tee~----L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEI----IEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cccccEEEEeCCCCCCCHHH----HHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 34568999999999999999 66999999 999998654 47999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.|+++........-..- ...++...... .........+
T Consensus 301 V~~Akp~~~~~~~~~~rg-~gg~~~~~~~~----------------------------------------~~~~g~~~sp 339 (578)
T TIGR01648 301 VTLAKPVDKKSYVRYTRG-TGGRGKERQAA----------------------------------------RQSLGQVYDP 339 (578)
T ss_pred EEEccCCCcccccccccc-cCCCccccccc----------------------------------------ccccCcccCc
Confidence 999976533110000000 00000000000 0001122234
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCee
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFK 199 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~ 199 (245)
.+.++++.|++...+++.+.++|..+|.+.
T Consensus 340 ~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 340 ASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred cccccccccccccccccchhhccccCcccc
Confidence 567899999999999999999999988764
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.1e-15 Score=110.21 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.-+++|||+||+..+++.| |+..|..||+|..||+-. ...|||||+|++..+|..|+..|+|..|.|..|+|++
T Consensus 8 ~~~~kVYVGnL~~~a~k~e----LE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRE----LERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHH----HHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 4489999999999999999 779999999999998876 3469999999999999999999999999999999999
Q ss_pred ccccch
Q 025973 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.....
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 876544
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=4.8e-15 Score=122.84 Aligned_cols=78 Identities=24% Similarity=0.470 Sum_probs=72.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
.....++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|||||+|.++++|..|+..|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467789999999999999999999999999999998764 5899999999999999999999999999999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
||+
T Consensus 183 ~a~ 185 (346)
T TIGR01659 183 YAR 185 (346)
T ss_pred ccc
Confidence 985
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=4.4e-15 Score=115.73 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=70.8
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
.++|||+|||+.+++++ |+++|+.||.|..|.+..++..+|||||+|.+.++|..|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~d----LrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERD----IKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999 67999999999999988777678999999999999999997 99999999999999976
Q ss_pred c
Q 025973 95 T 95 (245)
Q Consensus 95 ~ 95 (245)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 54
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=7.4e-15 Score=114.45 Aligned_cols=73 Identities=29% Similarity=0.307 Sum_probs=68.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++ +|||||+|.++++|..|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4679999999999999999999999999999999874 6899999999999999996 99999999999999874
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.58 E-value=2.5e-13 Score=110.95 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=66.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
..+.|||+|||..+||+.|++-|..||.|.+..++-.-+..+.|.|.++++|.+|+..|+|..+.|+.|.|.|+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 34579999999999999999999999999998886544456799999999999999999999999999999984
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=2.2e-14 Score=91.86 Aligned_cols=66 Identities=35% Similarity=0.604 Sum_probs=60.7
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 025973 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 174 l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~ 239 (245)
|+|+|||..+++++|.++|+.||.|..+.+..++ +++|||+|.++++|..|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999874 68999999999999999999999999999985
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.4e-14 Score=121.10 Aligned_cols=182 Identities=21% Similarity=0.308 Sum_probs=130.2
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeE---EEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL---EILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~---~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...-+.++|++||...++++++ ++...||.+. -|....+|.++||||.+|.+......|+..|||..+.+..+
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~----Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVK----ELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccccchhhhccCcCccCHHHHH----HHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 3446789999999999999966 5555555554 45566678999999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|..+-............ .....+.- .........
T Consensus 362 vvq~A~~g~~~~~~~~~~------------------------------------------~~~~~~~i---~~~~~q~~g 396 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFNI------------------------------------------SQSQVPGI---PLLMTQMAG 396 (500)
T ss_pred EeehhhccchhccccCCc------------------------------------------cccccccc---hhhhcccCC
Confidence 998875443311100000 00000000 000011222
Q ss_pred CCccEEEEcCCC--CCC-C-------HHHHHHHhccCCCeeEEEEecC-C-------CeEEEEEeCCHHHHHHHHHHhCC
Q 025973 169 PPNNILFVQNVP--HDT-T-------PMALQMFFSQFPGFKEVRMVEA-K-------PGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 169 ~~~~~l~v~nl~--~~~-t-------~~~l~~~f~~~g~v~~v~l~~~-~-------~g~afv~f~~~~~A~~A~~~l~g 230 (245)
.++.+|.+.|+= ... . .|+++.-++.||.|..|.+... . .|..||+|.+.+++++|++.|+|
T Consensus 397 ~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G 476 (500)
T KOG0120|consen 397 IPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG 476 (500)
T ss_pred CcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC
Confidence 456677777772 211 2 2556778899999999998875 1 57899999999999999999999
Q ss_pred CeeCCeEEEEEE
Q 025973 231 LKIGQQQLLITY 242 (245)
Q Consensus 231 ~~~~g~~i~v~~ 242 (245)
..|.|+++..+|
T Consensus 477 rKF~nRtVvtsY 488 (500)
T KOG0120|consen 477 RKFANRTVVASY 488 (500)
T ss_pred ceeCCcEEEEEe
Confidence 999999999887
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.4e-14 Score=109.93 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=71.9
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE---EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|-|.|||.+++|++ |+++|..||+|..| +...+|.+||||||.|.+.++|.+|+..|||.-+..-.|+|+
T Consensus 189 ~~tvRvtNLsed~~E~d----L~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDD----LEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cceeEEecCccccChhH----HHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 56799999999999999 77999999999887 455699999999999999999999999999999999999999
Q ss_pred Ecccc
Q 025973 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.56 E-value=4.3e-14 Score=86.26 Aligned_cols=56 Identities=30% Similarity=0.546 Sum_probs=52.4
Q ss_pred HHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 188 l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
|.++|++||.|.++.+.+..+++|||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998876689999999999999999999999999999999997
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=99.60 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
.+++|||+||...++|++|.++|+.+|.|+.|.+--++ .|||||+|.+.++|..|++.++|+.+..++|.+.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 56789999999999999999999999999988876654 69999999999999999999999999999999987
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=3e-14 Score=91.23 Aligned_cols=68 Identities=25% Similarity=0.456 Sum_probs=59.3
Q ss_pred EEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
|||+|||..+++++ |.++|+.||.|..+.+.. .+..+++|||+|.+.++|..|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~----l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEED----LRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHH----HHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHH----HHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999 669999999999886664 367899999999999999999999888999999874
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.8e-14 Score=111.75 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC---CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~---~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++|+|+|||+..-+-||+.+|.+||.|.+|.|+.+ .||||||+|+++++|.+|-+.|||..+.||+|.|-.|
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 57999999999999999999999999999999985 3899999999999999999999999999999999876
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=4.7e-13 Score=109.40 Aligned_cols=217 Identities=18% Similarity=0.267 Sum_probs=136.8
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhc-ccCCeEEE--EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFK-QFGTILEI--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~-~~G~v~~i--~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
....+.+||+|||+++.=.+|| ++|. ..|.|..| ....+|+.+|+|.|+|+++|.+++|++.||...+.||+|
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLK----dLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLK----DLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred ccccceEEEecCcchhhhHhHH----HHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 3445669999999999999955 7775 45888877 445689999999999999999999999999999999999
Q ss_pred EEEEccccchH----hhhcCC-Ccccch----hhhhhhhhh---------hhccchhhHhhhcCCC--------CccccC
Q 025973 89 RIQYAKTKSDI----IAKADG-TFVPRE----RRKRHEEKG---------KKRKDQHDANQAGMGL--------NPAYAG 142 (245)
Q Consensus 89 ~v~~~~~~~~~----~~~~~~-~~~~~~----~~~~~~~~~---------~~~~~~~~~~~~~~~~--------~~~~~~ 142 (245)
.|.--...... +.+.-+ .+.... .+...+.-- .+..+.... ...... +....+
T Consensus 117 ~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~-sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 117 VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRL-SRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCccccccc-ccccCccccccccccchhhh
Confidence 99764332211 000000 000000 000000000 000000000 000000 001111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCH
Q 025973 143 AYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDE 218 (245)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~ 218 (245)
..+..+.+..+. + .-..|....+||.||...+....|.+.|.--|.|.+|.+--++ +|++.++|.++
T Consensus 196 lfgl~~~Flr~~-h--------~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 196 LFGLSASFLRSL-H--------IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred cccchhhhhhhc-c--------CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 111111111100 0 0112345569999999999999999999999999998887765 78999999999
Q ss_pred HHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 219 MQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 219 ~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
-+|..|+..+++.-++.++..+.+
T Consensus 267 veavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 267 VEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHHHHHHhhccCCCccccceeec
Confidence 999999999998776777666544
No 64
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.2e-14 Score=108.03 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
.+.+|||+||++.+++++ |+++|+.||.|.+|.+.+++..+++|||+|.+.++|..|+. |+|..|.++.|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~d----LrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKD----VYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHH----HHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 467999999999999999 77999999999999999888888999999999999999997 9999999999999886
Q ss_pred cc
Q 025973 94 KT 95 (245)
Q Consensus 94 ~~ 95 (245)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.4e-14 Score=97.98 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...+++|||+||+..++|++ |+++|+.+|.|..|++- .+.+.-|||||+|-+.++|..|++.+++..+..++|
T Consensus 33 ~r~S~tvyVgNlSfyttEEq----iyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQ----IYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHH----HHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 45689999999999999999 89999999999988543 244567999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
++.|-....+
T Consensus 109 r~D~D~GF~e 118 (153)
T KOG0121|consen 109 RIDWDAGFVE 118 (153)
T ss_pred eeeccccchh
Confidence 9998654433
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=9.4e-14 Score=91.58 Aligned_cols=73 Identities=27% Similarity=0.537 Sum_probs=68.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
.+..|||+|||+++|.++.-++|..||.|..|++-..+ +|.|||.|.+..+|.+|+++|+|+.+.++-|.|-|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 46789999999999999999999999999999987654 79999999999999999999999999999999876
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=4.1e-14 Score=111.60 Aligned_cols=81 Identities=17% Similarity=0.355 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec-CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF-KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~-~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..--++|||+|||+...+-| |+.+|++||.|++|-+. ...-+|||+||.|++.+||.+|-++|||..+.||+|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpD----L~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPD----LRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCcc----HHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 33458999999999999999 77999999999988433 44458999999999999999999999999999999999
Q ss_pred EEcccc
Q 025973 91 QYAKTK 96 (245)
Q Consensus 91 ~~~~~~ 96 (245)
..+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998765
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=111.42 Aligned_cols=143 Identities=24% Similarity=0.309 Sum_probs=105.3
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|||+|||.++++++ |+.+|..||.|..|.+.. ++.++|+|||.|.+.++|..|+..+++..|.|+.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~----l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEED----LRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHH----HHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 69999999999999999 779999999998775543 68899999999999999999999999999999999999
Q ss_pred Eccc-cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 92 YAKT-KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 92 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
++.. ...... .... ....... . ...........
T Consensus 191 ~~~~~~~~~~~---~~~~-----~~~~~~~----------------------~----------------~~~~~~~~~~~ 224 (306)
T COG0724 191 KAQPASQPRSE---LSNN-----LDASFAK----------------------K----------------LSRGKALLLEK 224 (306)
T ss_pred ccccccccccc---cccc-----cchhhhc----------------------c----------------ccccccccccc
Confidence 9654 000000 0000 0000000 0 00001112235
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~ 207 (245)
...+++.|++..++..++...|..+|.+....+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 225 SDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 5679999999999999999999999999766666543
No 69
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.52 E-value=4.8e-13 Score=107.32 Aligned_cols=172 Identities=20% Similarity=0.213 Sum_probs=131.2
Q ss_pred cccccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHc--CC
Q 025973 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ--GF 81 (245)
Q Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~--~~ 81 (245)
|-..+.-++.++-.|+|++|-..++|.+ |.+-.+.||+|..+..+.. +..|.|+|++++.|..++...- ..
T Consensus 20 e~~~dphk~~~spvvhvr~l~~~v~ead----l~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i 92 (494)
T KOG1456|consen 20 EDNADPHKPNPSPVVHVRGLHQGVVEAD----LVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQI 92 (494)
T ss_pred ccCCCCCCCCCCceEEEeccccccchhH----HHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcc
Confidence 3344556688899999999999999999 5577789999988876643 4689999999999999987432 23
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025973 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.+.|..-.+.++..+.....
T Consensus 93 ~i~gq~Al~NyStsq~i~R~------------------------------------------------------------ 112 (494)
T KOG1456|consen 93 YIAGQQALFNYSTSQCIERP------------------------------------------------------------ 112 (494)
T ss_pred cccCchhhcccchhhhhccC------------------------------------------------------------
Confidence 33455555555433222100
Q ss_pred CCCCCCCCCccEEEEcCCC--CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC--CeE
Q 025973 162 VIPEAPAPPNNILFVQNVP--HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQ 237 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~--~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~--g~~ 237 (245)
.+....++++|.+.=|. ..+|-+-|..++.+.|+|.+|.+++..-=.|.|+|.+.+.|++|..+|||.-|+ --+
T Consensus 113 --g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 113 --GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred --CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccccccccee
Confidence 11222467777766553 788999999999999999999998864237999999999999999999999987 778
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|+|||
T Consensus 191 LKIeyAk 197 (494)
T KOG1456|consen 191 LKIEYAK 197 (494)
T ss_pred EEEEecC
Confidence 9999997
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=2.2e-13 Score=86.97 Aligned_cols=69 Identities=35% Similarity=0.580 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
+|+|+|||..+++++|+++|+.||.|.++.+..++ +|+|||+|.+.++|..|+..++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988765 6899999999999999999999999999999874
No 71
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=2.2e-13 Score=104.66 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.+|+|+||+..+|+++|+++|+.||.|.+|.|+.+. +++|||+|.++++|..|+. |||..|.+++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 45789999999999999999999999999999999875 5799999999999999995 9999999999999864
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.1e-13 Score=114.78 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCH--HHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDV--ASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~--~~A~~a~~~l~~~~~~g~~i 88 (245)
...+.+||||||++.+++++ |..+|+.||.|..|.+.+ +| ||||||+|.+. .++.+|+..|||..+.|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDD----LravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDD----LLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 44568999999999999999 779999999999987665 55 99999999987 78999999999999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.-+++.-
T Consensus 81 KVNKAKP~Y 89 (759)
T PLN03213 81 RLEKAKEHY 89 (759)
T ss_pred EEeeccHHH
Confidence 999997653
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5.5e-13 Score=101.30 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|-|.||+..+++.+|+++|.+||.|.++.|.+++ +|||||.|.+.++|++|+..|||+-+..-.|+|.|||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45679999999999999999999999999999999986 7999999999999999999999999999999999997
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=2.3e-13 Score=112.85 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-CeEEEEEeCCH--HHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDE--MQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-~g~afv~f~~~--~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+..|||+||+..+++++|..+|+.||.|.+|.|++.. +|||||+|.+. .++.+|+..|||..+.|+.|+|.-||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45679999999999999999999999999999999743 79999999987 68999999999999999999999987
No 75
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=103.76 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQM----FFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~----~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++.+|||.||++.+..++|+. +|+.||.|.+|...+.. +|.|||.|.+.+.|..|+.+|+|+.|.|++++|+||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 445899999999999999887 99999999999988764 799999999999999999999999999999999999
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 88 ~s 89 (221)
T KOG4206|consen 88 KS 89 (221)
T ss_pred cC
Confidence 73
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=3.2e-13 Score=82.38 Aligned_cols=56 Identities=34% Similarity=0.683 Sum_probs=50.7
Q ss_pred HHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 36 l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
|+++|++||.|..|.+.++. +++|||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56899999999999887655 689999999999999999999999999999999985
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.5e-13 Score=85.53 Aligned_cols=70 Identities=30% Similarity=0.528 Sum_probs=62.9
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC-CCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
+|||+|||..+++++ |+++|..||.|..+.+..+ +.++|+|||+|.+.++|..|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~----l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEED----LKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHH----HHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999 6699999999999876653 567799999999999999999999999999998876
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=8e-15 Score=106.37 Aligned_cols=76 Identities=30% Similarity=0.495 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE---ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
-+.-|||+|||++.||.| |.-+|++||.|..|. +..||+++||||+.|++..+-..|+..|||..+.||+|+|
T Consensus 34 dsA~Iyiggl~~~LtEgD----il~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGD----ILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCc----EEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 467899999999999999 559999999998874 4459999999999999999999999999999999999999
Q ss_pred EEc
Q 025973 91 QYA 93 (245)
Q Consensus 91 ~~~ 93 (245)
...
T Consensus 110 DHv 112 (219)
T KOG0126|consen 110 DHV 112 (219)
T ss_pred eec
Confidence 874
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=1.5e-13 Score=101.87 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=69.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..|.|-||...++.++|..+|.+||.|-+|.|..++ +|||||.|.+-.+|+.|++.|+|..+.|+.|.|++|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 459999999999999999999999999999999875 7999999999999999999999999999999999986
No 80
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.3e-13 Score=104.11 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.-|-+||||+-|+++++|+. |+..|+.||+|..|++. .+|+++|||||+|+...+...|++..+|..|.|+.|
T Consensus 98 gDPy~TLFv~RLnydT~Esk----LrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESK----LRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CCccceeeeeeccccccHHH----HHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 45789999999999999999 66999999999988655 489999999999999999999999999999999999
Q ss_pred EEEEcc
Q 025973 89 RIQYAK 94 (245)
Q Consensus 89 ~v~~~~ 94 (245)
.|.+-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 998853
No 81
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.3e-12 Score=100.23 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+.|+|--||..+|+++++.+|+..|+|.+|+|++|+ -||+||.|.++++|.+|+..|||..+..|+|+|+||+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44569999999999999999999999999999999987 4899999999999999999999999999999999996
No 82
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=2.2e-12 Score=82.75 Aligned_cols=70 Identities=39% Similarity=0.647 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+|+|+|||..+++++|.++|+.||.|..+.+..++ +++|||+|.+.++|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 38999999999999999999999999999999865 68999999999999999999999999999999875
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.8e-14 Score=103.60 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=69.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
.+..|||+|||..+||.||..+||+||.|.+|.|++++ +||||+.|.+..+...|+..|||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45679999999999999999999999999999999975 79999999999999999999999999999999975
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=4.7e-13 Score=101.24 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=64.5
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE---EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
-++|||+||+-.+..++ |+++|++||.|++. .+..+|++|||+||.|.+.++|.+|.+. -+-.|.||+-.|.
T Consensus 12 ~TKifVggL~w~T~~~~----l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKET----LRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHH----HHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 47899999999999999 77999999999984 3445899999999999999999999994 3345789988888
Q ss_pred Ecc
Q 025973 92 YAK 94 (245)
Q Consensus 92 ~~~ 94 (245)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 764
No 85
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=5.2e-13 Score=112.44 Aligned_cols=79 Identities=24% Similarity=0.469 Sum_probs=72.7
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE---ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
+.|||||+|+++++++ |..+|+..|.|.+++ +..+|..+||||++|.+.++|..|++.|||..+.|++|+|.|
T Consensus 19 ~~v~vgnip~~~se~~----l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQ----LLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHH----HHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 8999999999999999 779999999999874 446899999999999999999999999999999999999999
Q ss_pred ccccch
Q 025973 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.....
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 875544
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=5.4e-13 Score=98.89 Aligned_cols=81 Identities=23% Similarity=0.464 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
+++..-..|.|-||.+-++.++ |+.+|+.||.|-+|.+.+ ++.++|||||.|....+|+.|+.+|+|..+.|+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~----LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDD----LRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred CCcccceeEEecceeccCCHHH----HHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 4555678899999999999999 779999999999997765 778999999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|.|+++.
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99999875
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=8.6e-13 Score=91.27 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=69.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+-.|||.++-...++++|.+.|.-||.|+++.|--++ +|||+|+|.+..+|+.|+..+||..+-|.+|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34579999999999999999999999999999998876 799999999999999999999999999999999996
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=8.4e-13 Score=91.30 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
++-.|||+++...++|++ +.+.|..||.|..|++. ++|-.||||+|+|...+.|++|+..+||..+.|..|.|
T Consensus 71 EGwIi~VtgvHeEatEed----i~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEED----IHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred eeEEEEEeccCcchhHHH----HHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 356799999999999999 77999999999998544 68899999999999999999999999999999999999
Q ss_pred EEcc
Q 025973 91 QYAK 94 (245)
Q Consensus 91 ~~~~ 94 (245)
.|+-
T Consensus 147 Dw~F 150 (170)
T KOG0130|consen 147 DWCF 150 (170)
T ss_pred EEEE
Confidence 9973
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=3.1e-12 Score=81.27 Aligned_cols=66 Identities=35% Similarity=0.564 Sum_probs=61.0
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 176 v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
|+|||..+++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|..|+..+++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999988864 4899999999999999999999999999999873
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.8e-12 Score=98.83 Aligned_cols=75 Identities=29% Similarity=0.507 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.|-+||||.-|+..++|+.|+..|+.||.|+.|.|+.++ +|||||+|.++-+..+|..+.+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 356789999999999999999999999999999999974 799999999999999999999999999999999874
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=5.9e-12 Score=80.72 Aligned_cols=72 Identities=28% Similarity=0.576 Sum_probs=63.5
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCC--CeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL--KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~--~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
+|+|+|||..+++++ |.++|+.+|.|..+.+.... ..+++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~----i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEED----LRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHH----HHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999 66999999999988766533 4579999999999999999999999999999998864
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.8e-13 Score=99.25 Aligned_cols=81 Identities=28% Similarity=0.557 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
-..++|||++|..+++|.- |...|-.||.|..|.+. .+.+.+|||||+|.-.|+|..|+..||+..+.||+|+
T Consensus 8 ~~KrtlYVGGladeVtekv----LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKV----LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHH----HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 3468999999999999999 77999999999998654 4788999999999999999999999999999999999
Q ss_pred EEEccccc
Q 025973 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++++..
T Consensus 84 VN~AkP~k 91 (298)
T KOG0111|consen 84 VNLAKPEK 91 (298)
T ss_pred EeecCCcc
Confidence 99998754
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.2e-12 Score=80.64 Aligned_cols=67 Identities=28% Similarity=0.516 Sum_probs=59.9
Q ss_pred EcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 20 V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
|+|||..+++++ |.++|+.||.|..+.+.. ++.++|+|||+|.+.++|..|+..+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~----l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEE----LRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHH----HHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999 669999999999886654 4667899999999999999999999999999998876
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.4e-12 Score=107.58 Aligned_cols=188 Identities=18% Similarity=0.317 Sum_probs=131.3
Q ss_pred cccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhccc-------C-CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHH
Q 025973 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-------G-TILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-------G-~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~ 77 (245)
...+.....+++++|+++|+.++++++..+....+..- | .+..+.+. ..+++||++|.+.+.|..|+.
T Consensus 166 ~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 166 PMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA- 241 (500)
T ss_pred ccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-
Confidence 34455567789999999999999999553333332211 1 24444443 456899999999999999999
Q ss_pred HcCCccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCC
Q 025973 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPG 157 (245)
Q Consensus 78 l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (245)
+++..+.|..+++.-......... .....+.. .+...
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~--------------------------------------~~~~~~~~-----~~~~~ 278 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPG--------------------------------------ITLSPSQL-----GKVGL 278 (500)
T ss_pred ccchhhCCCCceecccccccCCcc--------------------------------------chhhhccc-----cccCC
Confidence 899999999887744221111000 00000000 00000
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCe
Q 025973 158 GAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLK 232 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~ 232 (245)
....+... ...+.++|+|||...++.++.++...||.++...++.+. +||||++|.++..+..|+..|||..
T Consensus 279 --~~~~t~~~-~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 279 --LPASTDVP-DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred --cccccCcc-cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 00001111 123459999999999999999999999999888888754 7999999999999999999999999
Q ss_pred eCCeEEEEEEe
Q 025973 233 IGQQQLLITYA 243 (245)
Q Consensus 233 ~~g~~i~v~~a 243 (245)
+++++|.|+.|
T Consensus 356 lgd~~lvvq~A 366 (500)
T KOG0120|consen 356 LGDKKLVVQRA 366 (500)
T ss_pred hcCceeEeehh
Confidence 99999999986
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=2.4e-12 Score=93.70 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+||+..++++.|+++|-+.|.|.++++.+++ .||||++|.++++|.-|+..||.-.++||+|+|.-|.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45689999999999999999999999999999999875 6999999999999999999999888999999998763
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-12 Score=98.07 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||++|...+++.-|...|=+||.|.+|.+.-+- +|||||+|.-.++|.+|+..||+..+.||+|+|-|||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45789999999999999999999999999999998752 7999999999999999999999999999999999996
No 97
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.9e-12 Score=92.77 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEec--CCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE--AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~--~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+..|||+|||..+-+.+|.++|.+||.|..|.|-. ....||||+|.++.+|.-|+.--+|..+.|..|+|.|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 456799999999999999999999999998887754 335799999999999999999999999999999999985
No 98
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.4e-12 Score=103.11 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=74.0
Q ss_pred ccccccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCc
Q 025973 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 3 p~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~ 82 (245)
|+...+...-..-+.|||+||+.++|++. |..+|+.||.|+.|...++ ||||+|.+-++|.+|++.+||..
T Consensus 247 p~~e~ded~ms~VKvLYVRNL~~~tTeE~----lk~~F~~~G~veRVkk~rD-----YaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 247 PEEEPDEDTMSKVKVLYVRNLMESTTEET----LKKLFNEFGKVERVKKPRD-----YAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred cccCCChhhhhheeeeeeeccchhhhHHH----HHHHHHhccceEEeecccc-----eeEEeecchHHHHHHHHHhcCce
Confidence 43333333344568899999999999999 5599999999999977654 99999999999999999999999
Q ss_pred cCCceEEEEEccccch
Q 025973 83 FYDKPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~ 98 (245)
+.|..|.|.++++...
T Consensus 318 ldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 318 LDGSPIEVTLAKPVDK 333 (506)
T ss_pred ecCceEEEEecCChhh
Confidence 9999999999987655
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=9.4e-12 Score=104.92 Aligned_cols=73 Identities=27% Similarity=0.454 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+||+|+|+.+++++|.++|+..|.|.+++++.|+ +||||++|.+.++|.+|++.|||..+.|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 679999999999999999999999999999999875 7999999999999999999999999999999999985
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=2e-11 Score=98.69 Aligned_cols=74 Identities=36% Similarity=0.563 Sum_probs=69.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+|||+|||..+++++|.++|..||.|..+.+..++ +|+|||+|.++++|..|+..++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5789999999999999999999999999999988864 7999999999999999999999999999999999863
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=8.5e-12 Score=94.51 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=64.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
-+.|||++|+-.+..++|+++|.+||+|.+..++.|+ ||||||+|.+.++|.+|++.- .-.|+||+-.|-+|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 4579999999999999999999999999999999875 899999999999999999864 46788888777664
No 102
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=3.1e-12 Score=112.88 Aligned_cols=159 Identities=15% Similarity=0.249 Sum_probs=133.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC--CCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT--LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~--~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
-+...+++||++||+..+++.+ |+..|..+|.|.+|.+... +...-||||.|.+...+-.|...+.+..|....
T Consensus 367 DD~~atrTLf~Gnl~~kl~ese----iR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESE----IRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred cchhhhhhhhhcCcccchhhhh----hhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 3467799999999999999999 6799999999999877654 333459999999999999998888887766555
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP 167 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
+++.+... .
T Consensus 443 ~r~glG~~-----------------------------------------------------------------------k 451 (975)
T KOG0112|consen 443 HRIGLGQP-----------------------------------------------------------------------K 451 (975)
T ss_pred cccccccc-----------------------------------------------------------------------c
Confidence 54444221 1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEEEEEec
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~ak 244 (245)
..+++.+++++|+.-+....|...|..||.|..|.+-.+. .||++.|.+...|++|+..|-|+.|+ .++|+|.||+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq-~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ-PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-cceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 1255679999999999999999999999999999988877 59999999999999999999999998 7889999985
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=4.7e-11 Score=76.18 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhcccCCeEEEE--ec-C-C--CCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 29 IDQLKQSLHAVFKQFGTILEIL--AF-K-T--LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 29 ~~~l~~~l~~~F~~~G~v~~i~--~~-~-~--~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
+++|++.+...++.||.|..|. .. + + +.++|+|||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 4675555555555999999873 22 2 3 788999999999999999999999999999999876
No 104
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.9e-11 Score=95.29 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=72.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
+.++..++++|+|+||.+.++.+| |+..|+.||+|.++.+. ++|+||.|.-.++|..|++.|++..|.|++
T Consensus 71 SksKsk~stkl~vgNis~tctn~E----lRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 71 SKSKSKASTKLHVGNISPTCTNQE----LRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred ccccCCCccccccCCCCccccCHH----HhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccce
Confidence 344566899999999999999999 77999999999999776 479999999999999999999999999999
Q ss_pred EEEEEcccc
Q 025973 88 MRIQYAKTK 96 (245)
Q Consensus 88 i~v~~~~~~ 96 (245)
++|..+..+
T Consensus 142 m~vq~stsr 150 (346)
T KOG0109|consen 142 MHVQLSTSR 150 (346)
T ss_pred eeeeeeccc
Confidence 999998654
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=8.6e-11 Score=74.94 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=49.2
Q ss_pred HHHHHHHhc----cCCCeeEEE-EecC-------CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 185 PMALQMFFS----QFPGFKEVR-MVEA-------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 185 ~~~l~~~f~----~~g~v~~v~-l~~~-------~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
+++|+++|+ .||.|.++. ++.+ .+|+|||+|.++++|..|+..|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888898 999998885 3321 27999999999999999999999999999999873
No 106
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1e-10 Score=93.31 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=67.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEEec
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL-QSLKIGQQQLLITYAK 244 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~ak 244 (245)
.+...++|||++|.+.+++.+|+++|.+||.|..|.+...+ ++|||+|.+.+.|..|.... |...|.|.+|+|.|++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34456789999999999999999999999999999999887 79999999999999777655 5577889999999975
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=94.04 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=113.3
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhccc----CCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQF----GTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~----G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
.|-+++||+++++.+ +..+|... |..+.|.+. .+|+..|-|||.|..+++|+.|+. -|...+.-|.|.+
T Consensus 163 ivRmRGLPfdat~~d----Vv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALD----VVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHH----HHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 466789999999999 66888633 233445433 388889999999999999999999 4666565555544
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
..+....-... ....... +.....+.++ .+..+....+ ...+
T Consensus 238 FRSTaaEvqqv-----------------------------lnr~~s~-pLi~~~~sp~------~p~~p~~~~p--~~~~ 279 (508)
T KOG1365|consen 238 FRSTAAEVQQV-----------------------------LNREVSE-PLIPGLTSPL------LPGGPARLVP--PTRS 279 (508)
T ss_pred HHHhHHHHHHH-----------------------------HHhhccc-cccCCCCCCC------CCCCccccCC--CCCC
Confidence 22221111000 0000000 0000000000 0000111111 1234
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCC-eeE--EEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPG-FKE--VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~--v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
..+|-+++||...+.+||.+||..|.. |.. |.++.+. .|-|||+|.+.++|.+|....+.+....+-|.|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 568999999999999999999988764 333 5555542 689999999999999999988776665666655
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=6.6e-10 Score=93.18 Aligned_cols=156 Identities=22% Similarity=0.312 Sum_probs=106.9
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---C--CCeee---EEEEEecCHHHHHHHHHHHcCCcc
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---T--LKHKG---QAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~--~~~kg---~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
..-+++||||+||.+++|++ |...|..||.+..=+-.+ . -..+| |+|+.|+++.+.+.-+.+...
T Consensus 256 ~~~S~KVFvGGlp~dise~~----i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--- 328 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQ----INASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--- 328 (520)
T ss_pred cccccceeecCCCccccHHH----HHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---
Confidence 34478999999999999999 669999999885422211 1 12345 999999999888877765432
Q ss_pred CCc--eEEEEEccccchHh-----hhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCC
Q 025973 84 YDK--PMRIQYAKTKSDII-----AKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYP 156 (245)
Q Consensus 84 ~g~--~i~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
... .++|.-...+.... ...+..|...
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d---------------------------------------------- 362 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLD---------------------------------------------- 362 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccchhhhc----------------------------------------------
Confidence 322 23232221111100 0000000000
Q ss_pred CCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHH
Q 025973 157 GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS-QFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQS 227 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~ 227 (245)
......+.+||||++||..++.++|..+|. .||.|.++-|-.|. +|-|-|.|.+..+-.+|+.+
T Consensus 363 -------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 -------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred -------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 011123678999999999999999999999 79999999988773 79999999999999999974
No 109
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=7.5e-11 Score=102.84 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++||||+.|+.++++.||.++|..||.|.+|.++..+ ++|||.|....+|.+|+++|+...+.++.|+|.||-
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 357899999999999999999999999999999999987 899999999999999999999999999999999983
No 110
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=99.14 E-value=3.5e-10 Score=72.10 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=56.2
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccC-CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
..|+|.|||.+.+...|+..|.+++..+| .|.+|. .+.|.|.|.+.+.|.+|.+.|+|....|+.|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999999999999999999995 777762 2689999999999999999999999999999999975
Q ss_pred ccc
Q 025973 95 TKS 97 (245)
Q Consensus 95 ~~~ 97 (245)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.12 E-value=4.4e-09 Score=87.80 Aligned_cols=217 Identities=17% Similarity=0.210 Sum_probs=121.0
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE-E--EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-I--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~-i--~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.....|-+++||+.|+++| |.++|+-.-.|.. | .+.+-++..|-|||+|++.++|++|+. -|...|..|-|.
T Consensus 101 ~~d~vVRLRGLPfscte~d----I~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIE 175 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEED----IVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIE 175 (510)
T ss_pred CCCceEEecCCCccCcHHH----HHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEE
Confidence 3678999999999999999 6699998755544 3 334466788999999999999999999 688888888898
Q ss_pred EEEccccchHhhhcCCC-cccc----hhhhhhhh---hhhhccchhhHhhhcCCCC--------ccccC-------CCCC
Q 025973 90 IQYAKTKSDIIAKADGT-FVPR----ERRKRHEE---KGKKRKDQHDANQAGMGLN--------PAYAG-------AYGA 146 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~-------~~~~ 146 (245)
|..+............. ...+ ......+. -.................. +.... ..+.
T Consensus 176 vF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~ 255 (510)
T KOG4211|consen 176 VFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGR 255 (510)
T ss_pred eehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccc
Confidence 87765443322111000 0000 00000000 0000000000000000000 00000 0000
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEecCC--CeEEEEEeCCHHHHH
Q 025973 147 TPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK--PGIAFVEYGDEMQAT 222 (245)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~v~l~~~~--~g~afv~f~~~~~A~ 222 (245)
.+..... ..+.................+..++||...++.++.++|+..-.+ ..|.+-++- +|-|+|+|.|.++|.
T Consensus 256 ~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 256 DPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAV 335 (510)
T ss_pred ccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhH
Confidence 0000000 001111111111222233679999999999999999999986554 333333332 789999999999999
Q ss_pred HHHHHhCCCeeCC
Q 025973 223 VAMQSLQSLKIGQ 235 (245)
Q Consensus 223 ~A~~~l~g~~~~g 235 (245)
.|+.. ++..+..
T Consensus 336 ~Amsk-d~anm~h 347 (510)
T KOG4211|consen 336 GAMGK-DGANMGH 347 (510)
T ss_pred hhhcc-CCcccCc
Confidence 99963 5555543
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2e-11 Score=91.45 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=107.9
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.+..+..++|||.|+...++|+- |.++|.+.|+|..|.+.. +++.| ||||.|.++.+...|+..+||..+.++
T Consensus 3 aaaae~drtl~v~n~~~~v~eel----L~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEEL----LSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHH----HHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 34577899999999999999998 779999999999987664 55666 999999999999999999999999999
Q ss_pred eEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 87 PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA 166 (245)
Q Consensus 87 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (245)
.+.|.+-...+-
T Consensus 78 e~q~~~r~G~sh-------------------------------------------------------------------- 89 (267)
T KOG4454|consen 78 EEQRTLRCGNSH-------------------------------------------------------------------- 89 (267)
T ss_pred hhhcccccCCCc--------------------------------------------------------------------
Confidence 888765221100
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
. -|+..++++.+..+|+.-|.+..+++..+. +.++|+.+...-+.-.++...++....
T Consensus 90 -----a-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 90 -----A-----PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred -----c-----hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 0 033456777777778887877777666532 457788777766666777666654433
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=3.5e-10 Score=84.22 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhccc-CCeEEEEe---cCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILA---FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~---~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.......++|..+|....+.+ +..+|.++ |.|..+++ .+||++||||||+|++.+.|.-|-+.||+..|.|+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~----~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETE----ILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccceeecccccchhHHH----HhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 345567899999999999999 55777877 67777665 46999999999999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025973 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|.|.+-.+.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999886654
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.6e-10 Score=92.40 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE---EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.+|.++|||-.|.+-+++++ |+-+|+.||.|.+| ++.++|.+..||||+|.+.+++.+|+-.|+++.|.+++|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeD----LeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDED----LEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred CCCcceEEEEecCCcccccc----hhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 57889999999999999999 77999999999885 566788899999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.|+..-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99997543
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.2e-10 Score=90.09 Aligned_cols=78 Identities=22% Similarity=0.456 Sum_probs=72.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCC-----eEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP-----GIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~-----g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
..||.++|||--|.+-++.+||.-+|+.||.|..+.++++++ .||||+|.+.++...|...|++.-|..++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 456889999999999999999999999999999999999862 399999999999999999999999999999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
|+.
T Consensus 315 FSQ 317 (479)
T KOG0415|consen 315 FSQ 317 (479)
T ss_pred hhh
Confidence 974
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.8e-10 Score=87.81 Aligned_cols=83 Identities=27% Similarity=0.376 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE---ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
..+++|+|||-.||.+..+.| |.++|-.||.|.+-+ ++-+..+|.|+||.|.|+.+|+.||.+|||..|.=++
T Consensus 281 eGPeGCNlFIYHLPQEFgDaE----liQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAE----LIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred cCCCcceEEEEeCchhhccHH----HHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 367799999999999999999 669999999998743 3348889999999999999999999999999999889
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|..-+++.
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9988765543
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.03 E-value=6.6e-10 Score=97.07 Aligned_cols=77 Identities=23% Similarity=0.451 Sum_probs=70.6
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
++||||++|+..+++.| |.++|+.||.|.+|.+.. .+++|||.+.+-.+|.+|+..|+...+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~d----L~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQD----LANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHH----HHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 79999999999999999 669999999999998764 46999999999999999999999999999999999987
Q ss_pred ccch
Q 025973 95 TKSD 98 (245)
Q Consensus 95 ~~~~ 98 (245)
.+..
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 5543
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=4.5e-10 Score=94.88 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=117.1
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.+..-+.++|+|-|||..+++++ |+.+|+.||.|.+|+ .+...+|..||+|-|+.+|+.|+++|++..+.|+.|
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~----L~~~f~~yGeir~ir--~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDT----LLRIFGAYGEIREIR--ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CcccCccceEEEEecCCcCCHHH----HHHHHHhhcchhhhh--cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 34456689999999999999999 779999999999964 344567999999999999999999999999999988
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
+............ + . . .+....+.++. ...+....
T Consensus 143 k~~~~~~~~~~~~---~---~---~-------------------------~~~~~~~~p~a-----------~s~pgg~~ 177 (549)
T KOG4660|consen 143 KRPGGARRAMGLQ---S---G---T-------------------------SFLNHFGSPLA-----------NSPPGGWP 177 (549)
T ss_pred cCCCcccccchhc---c---c---c-------------------------hhhhhccchhh-----------cCCCCCCc
Confidence 7222111111000 0 0 0 00001111110 00111111
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
... ++ +.|++..+...+...++.+|.+.. ...+...-.-|+.|.+..++..++..+ |+.+.++...++++
T Consensus 178 -~~~-~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 178 -RGQ-LF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFS 247 (549)
T ss_pred -CCc-ce-eeeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEec
Confidence 111 22 227777777778888888988766 544443346788888888887666633 67777776666654
No 119
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.95 E-value=1.1e-08 Score=68.62 Aligned_cols=81 Identities=26% Similarity=0.339 Sum_probs=65.5
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE---EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC----Cce
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY----DKP 87 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~----g~~ 87 (245)
.++|+|+|||...+.++|.+.|.+.|. |...=+ .+.+++-+.|||||-|.+++.|.+....++|..+. .+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~--g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFK--GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhcc--CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 378999999999999999988877653 444333 34457778999999999999999999999998875 458
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
+.|.||.-+.
T Consensus 79 c~i~yAriQG 88 (97)
T PF04059_consen 79 CEISYARIQG 88 (97)
T ss_pred EEEehhHhhC
Confidence 8888886554
No 120
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.2e-09 Score=92.40 Aligned_cols=76 Identities=26% Similarity=0.415 Sum_probs=69.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 025973 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 164 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~ 239 (245)
+...+-++.+|+|-|||..+++++|+.+|+.||+|+.|+.-+.+.|..||+|.|..+|.+|++.|++..+.|+.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3333446678999999999999999999999999999998888889999999999999999999999999999887
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=8e-09 Score=82.69 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHH-cCCccCCceEEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDKPMRI 90 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l-~~~~~~g~~i~v 90 (245)
....++|||+||-..++|.+ |+++|-+||.|.+|.+.. .+++|||+|.+-+.|..|.+.. +...+.|.+|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~d----IrdhFyqyGeirsi~~~~---~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQD----IRDHFYQYGEIRSIRILP---RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ccceeEEEecccccchhHHH----HHHHHhhcCCeeeEEeec---ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 44578999999999999999 679999999999997764 3579999999999999998766 457778999999
Q ss_pred EEccc
Q 025973 91 QYAKT 95 (245)
Q Consensus 91 ~~~~~ 95 (245)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=1.5e-08 Score=75.58 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQF-PGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~-g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
....+++..+|.-+.+..+...|.++ |.|..+++.+++ +|||||+|.+++.|..|-+.||++-|.++.|.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 44579999999999999999999998 667888887754 79999999999999999999999999999999876
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.82 E-value=6.4e-09 Score=83.96 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=122.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE---EecCCCCeeeEEEEEecCHHHHHHHHHHHcC-CccCCceE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDKPM 88 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~-~~~~g~~i 88 (245)
...++.|++++...+.+.+ .-.++..+|.+... .......++|++++.|...+.+..|+. +.+ ....++.+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~----~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESE----DDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhcc----ccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccc
Confidence 3588999999999988887 44788888866654 233467789999999999999999999 454 34444444
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
............. .........
T Consensus 161 ~~dl~~~~~~~~~----------------------------------------------------------n~~~~~~~~ 182 (285)
T KOG4210|consen 161 EKDLNTRRGLRPK----------------------------------------------------------NKLSRLSSG 182 (285)
T ss_pred cCccccccccccc----------------------------------------------------------chhcccccC
Confidence 3322221110000 000011112
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++....+++|++..+++++|..+|..+|.|..+++..++ +|+|++.|.+...+..++.. +...++++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 233445599999999999999999999999999998754 68999999999999999987 888899999988775
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 262 ~ 262 (285)
T KOG4210|consen 262 E 262 (285)
T ss_pred C
Confidence 3
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=3.4e-10 Score=99.86 Aligned_cols=137 Identities=22% Similarity=0.298 Sum_probs=111.2
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..++||+||++.+.+.+ |...|..+|.+..+.+. ..++.+|+||+.|...++|.+|+....+. +.|
T Consensus 667 ~~~~fvsnl~~~~~~~d----l~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g------ 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEED----LSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG------ 735 (881)
T ss_pred HHHHHHhhcchhhcCch----hhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh------
Confidence 46789999999999999 66899999888776433 36778899999999999999999944332 221
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
.
T Consensus 736 -------------------------------------------------------------------------------K 736 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------K 736 (881)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
..++|+|.|+..|.+.|+.+++.+|++.+..++..+ +|.|+|.|.++.+|.+++...+...+.-+.+.|.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQ 810 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccc
Confidence 239999999999999999999999999988877643 7899999999999999998887766654444443
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.79 E-value=4.2e-09 Score=85.45 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=115.1
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCC------CeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL------KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~------~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
.|.|.||++.++.++ ++.+|...|.|.++.++.+- .....|||.|.+...+..|.. |.++.|-++.|.|
T Consensus 9 vIqvanispsat~dq----m~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQ----MQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHH----HHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 899999999999999 77999999999999777622 244699999999999999998 6666666775555
Q ss_pred EE-ccccch-HhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCC-CCcccc--CCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QY-AKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG-LNPAYA--GAYGATPPLSQIPYPGGAKSVIPE 165 (245)
Q Consensus 91 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
-+ ...-.. ... |............ +...+ +++..+ ..+..+... .. .|..++.....
T Consensus 84 ~p~~~~~~p~r~a-----f~~l~~~navprl-----------l~pdg~Lp~~~~lt~~nh~p~ai-lk-tP~Lp~~~~A~ 145 (479)
T KOG4676|consen 84 RPYGDEVIPDRFA-----FVELADQNAVPRL-----------LPPDGVLPGDRPLTKINHSPNAI-LK-TPELPPQAAAK 145 (479)
T ss_pred EecCCCCCccHHH-----HHhcCcccccccc-----------cCCCCccCCCCccccccCCccce-ec-CCCCChHhhhh
Confidence 44 322111 100 0000000000000 00000 000000 000000000 00 00000000000
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC-CCeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-KPGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 166 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~-~~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
....-..+++|.+|+..+-..++...|..+|.|.+-...-. ...+|.++|........|++ ++|..+.
T Consensus 146 kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 146 KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 00012357999999999999999999999999987666543 24588899999889999998 5676654
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.79 E-value=1.3e-07 Score=71.56 Aligned_cols=74 Identities=26% Similarity=0.450 Sum_probs=63.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIG---QQQLLIT 241 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 241 (245)
-++|||.+||..+..-+|..+|..|-.-....|-... +.+|||.|.+...|..|+.+|||..|+ +.+|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4689999999999999999999988665444443321 359999999999999999999999998 9999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+||
T Consensus 114 lAK 116 (284)
T KOG1457|consen 114 LAK 116 (284)
T ss_pred ehh
Confidence 997
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=1.3e-08 Score=86.42 Aligned_cols=80 Identities=13% Similarity=0.319 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC---CCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT---LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~---~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
-+++|||.+|+..+--.+ |..+|+.||.|....+..+ .-.+.|+||.+++.++|.+||..||.+.++|+.|.|
T Consensus 404 ~gRNlWVSGLSstTRAtD----LKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATD----LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccceeeeccccchhhhH----HHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 378999999999999999 5599999999987655432 234569999999999999999999999999999999
Q ss_pred EEccccc
Q 025973 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
+-++...
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9987543
No 128
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=3.5e-08 Score=85.77 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
.+|.++.|||+||+++++++.|...|..||.|..++++..+ +.||||.|-+..+|.+|+..|+|..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 34566779999999999999999999999999999998743 5799999999999999999999999999999
Q ss_pred EEEEec
Q 025973 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
++.|+|
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999986
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.77 E-value=3.7e-08 Score=85.45 Aligned_cols=193 Identities=12% Similarity=0.086 Sum_probs=125.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE--EecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
-++.+-+.+++...++.+ ++++|.-. .|..+ ..++ .+...|.++|.|....++++|++ -|...+..|.+.+
T Consensus 310 d~~y~~~~gm~fn~~~nd----~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFND----GRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred hhheeeecccccccccch----hhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceee
Confidence 367788899999999999 55777633 33332 2222 33346899999999999999999 5777778888888
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
..+........ +.+.... .+......++.+........+.... .+. ....
T Consensus 384 ~P~g~~~~~~a---~~~~~~~------------------------~~~~~~~~hg~p~~~pr~~~~~gq~--vp~-P~~a 433 (944)
T KOG4307|consen 384 GPPGNLGRNGA---PPFQAGV------------------------PPPVIQNNHGRPIAPPRAMVRPGQN--VPF-PGGA 433 (944)
T ss_pred cCCCccccccC---ccccccC------------------------CCCcccccCCCCCCCcccccCCCCC--CCC-CCCc
Confidence 77643322111 1100000 0011122222222222222221111 111 1234
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+.+|||..||..+++.++.++|+....|.+ |.|.+.. ++.|||.|..++++..|+..-+.+.++.+-|+|.-
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 568999999999999999999998766655 7776643 67999999999999999987777777788888853
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.77 E-value=1.4e-07 Score=82.06 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=61.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v-~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+|-+.|+|+.++.+||.+||.-|-.+ .+|.+-.+. +|-|.|.|++.++|.+|...|++..|..+++++.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 89999999999999999999999665 555555432 78999999999999999999999999999998864
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=1.2e-07 Score=63.63 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeC----CeEEEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQ--FPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIG----QQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~--~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~----g~~i~v 240 (245)
+||.|+|+|...|.++|.+++.. .|....+.|+-|- .|||||.|.+++.|..-.+.++|..+. .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999999988864 3556666666542 699999999999999999999998875 777888
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8885
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=2.5e-08 Score=84.79 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=68.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+..|+|.+|...+-..+|+++|++||+|.-.+++.+- +=|+||+|.+.++|.+++.+||.+.++|+.|.|.-||
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34569999999999999999999999999888888753 3499999999999999999999999999999999886
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.72 E-value=1.1e-09 Score=89.56 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=116.5
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccC-CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC-CccCCceEEEEEc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDKPMRIQYA 93 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~-~~~~g~~i~v~~~ 93 (245)
..+|++||.+.++.++ |+.+|...- +...-.+++ .|||||.+.+..-|.+|++.++| ..+.|.++.+.++
T Consensus 2 nklyignL~p~~~psd----l~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSD----LESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHH----HHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 4689999999999999 778887551 110111122 37999999999999999999988 6778999988886
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccE
Q 025973 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
.++.-+ ++.
T Consensus 74 v~kkqr-----------------------------------------------------------------------srk 82 (584)
T KOG2193|consen 74 VPKKQR-----------------------------------------------------------------------SRK 82 (584)
T ss_pred hhHHHH-----------------------------------------------------------------------hhh
Confidence 544321 233
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 174 l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+-|+|+|...-++-|..+...||.+..+..+... .-..-|.|.+.+.+..|+.++||..+.+..++|.|
T Consensus 83 ~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 83 IQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 7889999999999999999999999887765432 23456889999999999999999999988888776
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5.3e-08 Score=76.07 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=70.1
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE--EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+|+|.|||+.++++| |.++|..||.+..+ ++.+.|.+.|.|-|.|...++|..|++.+|++.+.|+.|++..
T Consensus 83 ~~~v~v~NL~~~V~~~D----l~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDAD----LKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHH----HHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 47899999999999999 66999999977664 6667999999999999999999999999999999999999888
Q ss_pred ccccc
Q 025973 93 AKTKS 97 (245)
Q Consensus 93 ~~~~~ 97 (245)
.....
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 65443
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.68 E-value=1.7e-08 Score=77.55 Aligned_cols=70 Identities=20% Similarity=0.459 Sum_probs=63.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
...||++.|...++.+.|...|.+|-....-++++++ +||+||.|.++.++.+|+..|+|..++.++|++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 4569999999999999999999999888777888764 799999999999999999999999999998875
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.64 E-value=5.7e-08 Score=81.83 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.....|||+|||.++++++ |.++|..||.|.+..+.. .+++..||||+|.+.+.+..|+. .+...+.++++.
T Consensus 286 ~~~~~i~V~nlP~da~~~~----l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAE----LEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHH----HHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEE
Confidence 3355599999999999999 779999999999864432 34455899999999999999999 578888999999
Q ss_pred EEEccc
Q 025973 90 IQYAKT 95 (245)
Q Consensus 90 v~~~~~ 95 (245)
|+--..
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 976443
No 137
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=3.8e-08 Score=75.25 Aligned_cols=69 Identities=20% Similarity=0.425 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+||++||..+.+.+|..+|..||.+.++.+. .||+||+|.++.+|.-|+..+|+..|.|.++.|.||+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 48999999999999999999999999888774 3799999999999999999999999998889999986
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.9e-07 Score=72.97 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
..|+|.|||..++.+||+++|..||.++.+-+.+++ .|.|-|.|...++|.+|++.+||..+.|++|++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 569999999999999999999999999999999875 579999999999999999999999999999988754
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.61 E-value=3e-07 Score=58.85 Aligned_cols=68 Identities=16% Similarity=0.377 Sum_probs=47.8
Q ss_pred cEEEEcCCCCCCCHHHH----HHHhccCCC-eeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMAL----QMFFSQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l----~~~f~~~g~-v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..|+|.|||.......| +.++..+|. |..|. .+.|+|.|.+++.|.+|...|+|-.+.|.+|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999988887664 566667765 55552 3689999999999999999999999999999999974
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.59 E-value=2.1e-07 Score=74.74 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=68.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFK--------EVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--------~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~ 237 (245)
.++.|||.|||..+|-+++..+|+.+|.|. .|+|+++. +|-|++.|--.++...|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 455699999999999999999999999883 47888764 789999999999999999999999999999
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|+.|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999885
No 141
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.56 E-value=1.1e-07 Score=77.13 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE---ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..+|||++||.++++.+ |++.|++||.|..+. +..+...+||+||.|.+.+++.++.. ..-..|.|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~----~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEED----FKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHH----HhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 55999999999999999 669999999887753 33467789999999999999999988 67889999999999
Q ss_pred EccccchHh
Q 025973 92 YAKTKSDII 100 (245)
Q Consensus 92 ~~~~~~~~~ 100 (245)
.|.++....
T Consensus 172 rA~pk~~~~ 180 (311)
T KOG4205|consen 172 RAIPKEVMQ 180 (311)
T ss_pred eccchhhcc
Confidence 998877643
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=1.8e-07 Score=81.47 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--C----CCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--T----LKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~----~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.+.+++|||+||++.++++. |...|..||+|.+|+++- + ...+.++||-|.+-.+|.+|++.|+|..+.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~----ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENF----LLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHH----HHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 45689999999999999999 669999999999986663 2 2356799999999999999999999999999
Q ss_pred ceEEEEEccc
Q 025973 86 KPMRIQYAKT 95 (245)
Q Consensus 86 ~~i~v~~~~~ 95 (245)
..+++.|++.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999854
No 143
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.51 E-value=3.4e-07 Score=62.84 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=45.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCC-----eeCCeEEEEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL-----KIGQQQLLIT 241 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~-----~~~g~~i~v~ 241 (245)
.+|.|.+++..++.++|++.|+.||.|.+|.+..+. ..|+|.|.+++.|..|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468999999999999999999999999999999987 48999999999999999877543 4445555443
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.48 E-value=2e-07 Score=71.80 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccC---CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG---TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G---~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
-+-+||.+.|..+++++. |...|.+|- .-..|+..++|+++||+||.|.+..++..|+..|+|..++.+.|++
T Consensus 189 ~DfRIfcgdlgNevnd~v----l~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDV----LARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred ccceeecccccccccHHH----HHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 368999999999999998 556666664 3445788899999999999999999999999999999999988866
Q ss_pred EE
Q 025973 91 QY 92 (245)
Q Consensus 91 ~~ 92 (245)
.-
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 43
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.38 E-value=7.5e-07 Score=69.74 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+.++|+|++..+|.+++..+|+.||.+..+.+..++ +||+||+|.+.+.+..|+. |||..|.|+.|.|++.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34569999999999999999999999999988888764 7899999999999999999 99999999999998854
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=2.8e-05 Score=63.59 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=102.6
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhccc----CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+..|-.++||-..++.+|. .+|.-. |.+.-+ ..-.|+..|.|.|.|.+.|.-.-|++ .|...+.++.|
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia----~ff~gl~ia~gg~aKO-G~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryi 131 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIA----RFFKGLNIANGGRALC-LNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYI 131 (508)
T ss_pred CcceEEEecCCCCCcccCCHH----HHHhhhhccccceeee-ehhhhccccceEEEecCchhhhhhhH-hhhhhccCCce
Confidence 345677789999999998844 666533 222222 22346667899999999999999999 68888888988
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.-+...+.-.. ..+. .... .+....
T Consensus 132 evYka~ge~f~~i-agg~--------------------------------------------------s~e~--~~flsk 158 (508)
T KOG1365|consen 132 EVYKATGEEFLKI-AGGT--------------------------------------------------SNEA--APFLSK 158 (508)
T ss_pred eeeccCchhheEe-cCCc--------------------------------------------------cccC--CCCCCc
Confidence 8866544332100 0000 0000 000000
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccC----CCeeEEEEecC---C-CeEEEEEeCCHHHHHHHHHH
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQF----PGFKEVRMVEA---K-PGIAFVEYGDEMQATVAMQS 227 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~----g~v~~v~l~~~---~-~g~afv~f~~~~~A~~A~~~ 227 (245)
...-.+-+++||+.+++.++..||.+. |....|.++.. + +|-|||.|..+++|+.||..
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 012346788999999999999999632 24455665542 3 79999999999999999974
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.36 E-value=8.8e-07 Score=69.37 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeE--EEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL--EILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~--~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
.....+.+||+|+.+.++.++ +...|+.||.|. .|...+ .++.||||||+|.+.+.+..|+. |++..+.|+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~----~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~ 171 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTK----IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA 171 (231)
T ss_pred hccCCceEEEeccccccccch----hhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccc
Confidence 345578999999999999999 669999999996 343333 56789999999999999999999 9999999999
Q ss_pred EEEEEcccc
Q 025973 88 MRIQYAKTK 96 (245)
Q Consensus 88 i~v~~~~~~ 96 (245)
+.|.+....
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 999886554
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=2.2e-07 Score=70.08 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=66.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
...+|||.|+...++++.|.++|-.-|.|..|.|..++ ..||||.|.++....-|++.+||-.+.+..|.+++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 45679999999999999999999999999999998865 23999999999999999999999999999998876
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.33 E-value=1.2e-06 Score=73.96 Aligned_cols=69 Identities=33% Similarity=0.545 Sum_probs=59.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEec----CC-CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE----AK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~----~~-~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
.|||+|||..++..+|.++|..||.|+...|.. ++ ..||||+|.+.+++..|+++ +-..+++++|.|.-
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 499999999999999999999999997766654 21 26999999999999999985 57888999999974
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.98 E-value=3.3e-05 Score=53.03 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=44.0
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC-----ccCCceEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF-----PFYDKPMR 89 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~-----~~~g~~i~ 89 (245)
++.|+|.|++.+++.++ |...|+.||.|..|.+.+. -..|||.|.+.++|+.|+..+... .+.+..+.
T Consensus 1 G~il~~~g~~~~~~re~----iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSRED----IKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHH----HHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHH----HHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 36799999999999999 5599999999998877652 247999999999999999877543 55566666
Q ss_pred EEEccc
Q 025973 90 IQYAKT 95 (245)
Q Consensus 90 v~~~~~ 95 (245)
+.....
T Consensus 74 ~~vLeG 79 (105)
T PF08777_consen 74 LEVLEG 79 (105)
T ss_dssp EE---H
T ss_pred EEECCC
Confidence 655433
No 151
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=4.3e-05 Score=65.50 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCc--ccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC-Cc
Q 025973 12 ISPNNTIYINNLNE--KVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-DK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~--~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~-g~ 86 (245)
.--...|.|.|+|- ....+-|+..|..+|+.+|+|..+.+. ..|.++||.|++|.+..+|..|++.|||..+. ++
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 35578999999994 455678888899999999999887665 45669999999999999999999999998887 66
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
+..|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 88886643
No 152
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.88 E-value=7.6e-05 Score=53.52 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=59.1
Q ss_pred CCCCCeEEEcCCC-----cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 12 ISPNNTIYINNLN-----EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp-----~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.+|..+|.|.=+. .....++|...|.+.|..||.|.-|++.. +.-+|.|.+-++|.+|+. ++|..+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCE
Confidence 5667777777665 34567778888889999999998888775 368999999999999999 999999999
Q ss_pred eEEEEEccc
Q 025973 87 PMRIQYAKT 95 (245)
Q Consensus 87 ~i~v~~~~~ 95 (245)
.|+|..-.+
T Consensus 98 ~l~i~LKtp 106 (146)
T PF08952_consen 98 TLKIRLKTP 106 (146)
T ss_dssp EEEEEE---
T ss_pred EEEEEeCCc
Confidence 999987443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.88 E-value=3.7e-05 Score=61.91 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCcccChHHHHHHH--HHhhcccCCeEEEEecCCC---Ce-eeE--EEEEecCHHHHHHHHHHHcCCccCC
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSL--HAVFKQFGTILEILAFKTL---KH-KGQ--AWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l--~~~F~~~G~v~~i~~~~~~---~~-kg~--afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
...-+||-+||+.+..++...-| .++|.+||.|..|.+.+.- .+ .+. .||.|.+.|+|..|+...+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 35668999999988777633323 4799999999998766421 11 122 3999999999999999999999999
Q ss_pred ceEEEEEcccc
Q 025973 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
|.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999997654
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.86 E-value=1.7e-05 Score=64.31 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g 235 (245)
....++||-+||+.+++.+|.++|.++|.|+. |.+..++ |+-|.|.|.++..|+.|+..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45567999999999999999999999998732 4444443 7899999999999999999999999999
Q ss_pred eEEEEEEecC
Q 025973 236 QQLLITYAKK 245 (245)
Q Consensus 236 ~~i~v~~ak~ 245 (245)
.+|+|.+|.+
T Consensus 144 n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 NTIKVSLAER 153 (351)
T ss_pred CCchhhhhhh
Confidence 9999998864
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.0002 Score=48.40 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=50.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEE------------EecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCe-EE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVR------------MVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QL 238 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~------------l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~-~i 238 (245)
.-|.|-+.|.. .-..+.+.|++||.|.+.. -.+...++..|.|+++.+|.+||+ -||..|.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 45888888877 5667788899999997664 222334799999999999999998 699999864 55
Q ss_pred EEEEe
Q 025973 239 LITYA 243 (245)
Q Consensus 239 ~v~~a 243 (245)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 57665
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=0.0001 Score=43.85 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHH
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~ 225 (245)
+.|-|.+.+....+. +..+|..||.|..+.+.... ...+|.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~-~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST-NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC-cEEEEEECCHHHHHhhC
Confidence 357788888665544 55588899999998887444 69999999999999985
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.71 E-value=4.6e-05 Score=61.94 Aligned_cols=88 Identities=26% Similarity=0.331 Sum_probs=74.6
Q ss_pred cccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--------EE---ecCCCCeeeEEEEEecCHHHHHHH
Q 025973 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------IL---AFKTLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~---~~~~~~~kg~afV~F~~~~~A~~a 74 (245)
....++..-..+|||-+||..+++++ |..+|.++|.|.. |. ...|+..|+-|.|.|.+...|+.|
T Consensus 57 ~~~~~~~s~~~ti~v~g~~d~~~~~~----~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaa 132 (351)
T KOG1995|consen 57 ASSMADKSDNETIFVWGCPDSVCEND----NADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAA 132 (351)
T ss_pred cCccccccccccceeeccCccchHHH----HHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhh
Confidence 34556677788999999999999999 7799999997753 32 224778999999999999999999
Q ss_pred HHHHcCCccCCceEEEEEccccc
Q 025973 75 VEKMQGFPFYDKPMRIQYAKTKS 97 (245)
Q Consensus 75 ~~~l~~~~~~g~~i~v~~~~~~~ 97 (245)
+.-+++..|.|.+|+|.++....
T Consensus 133 i~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 133 IEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hhhhccccccCCCchhhhhhhcc
Confidence 99999999999999998886554
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.68 E-value=0.00014 Score=43.19 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=42.5
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHH
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~ 75 (245)
+.|-|.|.+.+..+. +..+|..||.|..+.... ...+.||.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-----vl~~F~~fGeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-----VLEHFASFGEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-----HHHHHHhcCCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 567889999887765 446889999999987762 3479999999999999985
No 159
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.66 E-value=0.00039 Score=44.69 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=46.0
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
..+..+...||+ .|..+...| |.++|+.||.|.--++..+ .|||...+.+.|..++..+..
T Consensus 4 ~~P~RdHVFhlt-FPkeWK~~D----I~qlFspfG~I~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 4 PQPSRDHVFHLT-FPKEWKTSD----IYQLFSPFGQIYVSWINDT-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp ---SGCCEEEEE---TT--HHH----HHHHCCCCCCEEEEEECTT-----EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCCcceEEEEe-CchHhhhhh----HHHHhccCCcEEEEEEcCC-----cEEEEeecHHHHHHHHHHhcc
Confidence 445567788888 999999999 7799999999977677654 699999999999999987753
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.58 E-value=4.1e-05 Score=59.39 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=59.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-------------C----eEEEEEeCCHHHHHHHHHHhCCCee
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-------------P----GIAFVEYGDEMQATVAMQSLQSLKI 233 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-------------~----g~afv~f~~~~~A~~A~~~l~g~~~ 233 (245)
..+||++|||+.+...-|+++|+.||.|-+|.|.+.. + .-|-|+|.+-..|.++...||+.+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4589999999999999999999999999999998842 0 1478999999999999999999999
Q ss_pred CCeE
Q 025973 234 GQQQ 237 (245)
Q Consensus 234 ~g~~ 237 (245)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.57 E-value=0.0003 Score=47.55 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=52.2
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec-C---------CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF-K---------TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~-~---------~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
..+-|.|=|.|+..+.. +-+.|++||.|.+.... + .....+.-.|.|.+..+|.+|+. .||..+
T Consensus 5 ~~~wVtVFGfp~~~~~~-----Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~ 78 (100)
T PF05172_consen 5 SETWVTVFGFPPSASNQ-----VLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF 78 (100)
T ss_dssp GCCEEEEE---GGGHHH-----HHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred CCeEEEEEccCHHHHHH-----HHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence 34568888999886654 44899999999887411 1 01234689999999999999999 799999
Q ss_pred CCc-eEEEEEcc
Q 025973 84 YDK-PMRIQYAK 94 (245)
Q Consensus 84 ~g~-~i~v~~~~ 94 (245)
.|. .+-|.+.+
T Consensus 79 ~g~~mvGV~~~~ 90 (100)
T PF05172_consen 79 SGSLMVGVKPCD 90 (100)
T ss_dssp TTCEEEEEEE-H
T ss_pred cCcEEEEEEEcH
Confidence 986 56677764
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.52 E-value=6.3e-05 Score=62.45 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=56.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC---C---------------CeEEEEEeCCHHHHHHHHHHhCC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA---K---------------PGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~---~---------------~g~afv~f~~~~~A~~A~~~l~g 230 (245)
-++.+|.+.|||....-+.|.++|+.+|.|+.|++..- . +-+|+|+|.+.+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999999999999999999999999863 0 34799999999999999998865
Q ss_pred Cee
Q 025973 231 LKI 233 (245)
Q Consensus 231 ~~~ 233 (245)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 443
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00025 Score=60.99 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=58.8
Q ss_pred CccEEEEcCCCCC--CC----HHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEE
Q 025973 170 PNNILFVQNVPHD--TT----PMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIG-QQQL 238 (245)
Q Consensus 170 ~~~~l~v~nl~~~--~t----~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i 238 (245)
-..+++|-|+|-- .. ..-|..+|+++|++....+..+. +||.|++|.+..+|..|++.|||+.|. +++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3567999999832 11 34467899999999988888653 799999999999999999999999998 7777
Q ss_pred EEE
Q 025973 239 LIT 241 (245)
Q Consensus 239 ~v~ 241 (245)
.|-
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.49 E-value=0.0013 Score=47.33 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=52.9
Q ss_pred CCCccEEEEcCCC-----CCCCH----HHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 168 APPNNILFVQNVP-----HDTTP----MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 168 ~~~~~~l~v~nl~-----~~~t~----~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
.|+..++.|.=+. ..... .+|.+.|..||.+.-|+++-+ .-.|.|.+-+.|.+|+. ++|..++|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---TMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---CEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---eEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 3566677776444 12223 367888999999988888754 57899999999999997 89999999999
Q ss_pred EEEE
Q 025973 239 LITY 242 (245)
Q Consensus 239 ~v~~ 242 (245)
+|.+
T Consensus 100 ~i~L 103 (146)
T PF08952_consen 100 KIRL 103 (146)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.46 E-value=0.00042 Score=55.96 Aligned_cols=74 Identities=15% Similarity=0.356 Sum_probs=61.1
Q ss_pred CccEEEEcCCCCCCCHHHH------HHHhccCCCeeEEEEecCC------Ce--EEEEEeCCHHHHHHHHHHhCCCeeCC
Q 025973 170 PNNILFVQNVPHDTTPMAL------QMFFSQFPGFKEVRMVEAK------PG--IAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l------~~~f~~~g~v~~v~l~~~~------~g--~afv~f~~~~~A~~A~~~l~g~~~~g 235 (245)
..+.+||-+|+..+..|+. .++|.+||.|+.|.+-+.- .+ -.++.|.+-++|.+++...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3456899999988877773 5889999999988776521 12 24999999999999999999999999
Q ss_pred eEEEEEEe
Q 025973 236 QQLLITYA 243 (245)
Q Consensus 236 ~~i~v~~a 243 (245)
|.|+..|.
T Consensus 193 r~lkatYG 200 (480)
T COG5175 193 RVLKATYG 200 (480)
T ss_pred ceEeeecC
Confidence 99999885
No 166
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.44 E-value=9.5e-05 Score=59.99 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=68.2
Q ss_pred CCCeEE-EcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 14 PNNTIY-INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 14 ~~~~l~-V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
+..++| |++|+..+++++ |+.+|..+|.|..+++.. ++.++|+|||.|.+...+..++.. +...+.++++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~----~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDD----LKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLR 257 (285)
T ss_pred ccccceeecccccccchHH----HhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccc
Confidence 344555 999999999999 668999999999987664 788999999999999999999996 78888899999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
+.+..+...
T Consensus 258 ~~~~~~~~~ 266 (285)
T KOG4210|consen 258 LEEDEPRPK 266 (285)
T ss_pred cccCCCCcc
Confidence 998776544
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.42 E-value=7.5e-05 Score=58.05 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=49.5
Q ss_pred HHHHHHhc-cCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 186 MALQMFFS-QFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 186 ~~l~~~f~-~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+++...|+ +||.|..+++-.+. .|.++|.|...++|.+|++.||+.+|.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45556666 89999888776643 689999999999999999999999999999998874
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.37 E-value=0.00011 Score=56.98 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC-----------CCee----eEEEEEecCHHHHHHHHHHH
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-----------LKHK----GQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-----------~~~k----g~afV~F~~~~~A~~a~~~l 78 (245)
..-.||+++||+.++..- |+++++.||.|-.|.+.+. |.++ .-|+|+|.+-..|..+...|
T Consensus 73 k~GVvylS~IPp~m~~~r----lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVR----LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred cceEEEeccCCCccCHHH----HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 457899999999999998 6688899999988866542 1112 25789999999999999999
Q ss_pred cCCccCCc
Q 025973 79 QGFPFYDK 86 (245)
Q Consensus 79 ~~~~~~g~ 86 (245)
|+..|.|+
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99999876
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.33 E-value=0.00074 Score=53.57 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=57.1
Q ss_pred CccEEEEcCCC--CCC---CHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 170 PNNILFVQNVP--HDT---TPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 170 ~~~~l~v~nl~--~~~---t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
++++|.++|+- -.+ -++++...+.+||.|-+|.++-.. .--.||+|..+++|.+|+-.|||..|+|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 34456777762 233 345678889999999888777543 1247999999999999999999999999999
Q ss_pred EEEE
Q 025973 239 LITY 242 (245)
Q Consensus 239 ~v~~ 242 (245)
+.+|
T Consensus 360 ~A~F 363 (378)
T KOG1996|consen 360 SACF 363 (378)
T ss_pred ehee
Confidence 9887
No 170
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.28 E-value=0.00047 Score=62.42 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC--ceE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--KPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g--~~i 88 (245)
...+++.+|+++|+..+.... |...|..||+|..|.+... -.||||+|++...|+.|++.|-|..|.| +.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~----l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSR----LNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHH----HHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCccc
Confidence 677899999999999999888 7799999999988876643 3699999999999999999999999984 589
Q ss_pred EEEEccc
Q 025973 89 RIQYAKT 95 (245)
Q Consensus 89 ~v~~~~~ 95 (245)
.|.|+..
T Consensus 524 rvdla~~ 530 (975)
T KOG0112|consen 524 RVDLASP 530 (975)
T ss_pred ccccccC
Confidence 9988753
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.26 E-value=0.001 Score=51.83 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=51.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC-C---CeEEEEEeCCHHHHHHHHHHhCCCee
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-K---PGIAFVEYGDEMQATVAMQSLQSLKI 233 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~-~---~g~afv~f~~~~~A~~A~~~l~g~~~ 233 (245)
..|+|.||..-++.+.+..-|+.||.|..-.++.| + .+-++|.|.....|..|+...+..-|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 45999999999999999999999999966554443 2 56899999999999999988854333
No 172
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.24 E-value=0.0032 Score=44.77 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCCCCCCeEEEcCCCcccCh-HHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 10 NEISPNNTIYINNLNEKVKI-DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~-~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...+|-.+|.|+=|...+.. +|++ .+.+..+.||+|.+|... | +..|.|.|.+..+|.+|+.+++. ...|..+
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~-sV~~~Ls~fGpI~SVT~c--G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLK-SVIQRLSVFGPIQSVTLC--G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHH-HHHHHHHhcCCcceeeec--C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34567778888877766644 3333 344667999999998665 3 46799999999999999998776 5668888
Q ss_pred EEEEcc
Q 025973 89 RIQYAK 94 (245)
Q Consensus 89 ~v~~~~ 94 (245)
++.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888743
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00042 Score=59.99 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=63.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEEEEE
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQ-FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG---QQQLLITY 242 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~---g~~i~v~~ 242 (245)
....+++|+|.||-...|..+|+.++.. .|.|....|-+- +.-|||.|.+.++|.....+|||-.+- ++.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4567889999999999999999999995 455654433222 468999999999999999999998774 88999999
Q ss_pred ecC
Q 025973 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
+.+
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 753
No 174
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=1.8e-05 Score=70.83 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=111.0
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCC---eeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK---HKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~---~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
.....+...+.++.+...+.++ ....|..+|.|+.|+....|. ...++++.++...++..|.. ..+-.+.++.
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~---~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~ 642 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEI---QRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRS 642 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHh---hHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCcc
Confidence 3455677788888887777652 678999999999997665222 22378888888888888877 5666667776
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP 167 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
..|..+.+...... - ......
T Consensus 643 ~av~~ad~~~~~~~---~--------------------------------------------------------kvs~n~ 663 (881)
T KOG0128|consen 643 AAVGLADAEEKEEN---F--------------------------------------------------------KVSPNE 663 (881)
T ss_pred ccCCCCCchhhhhc---c--------------------------------------------------------CcCchH
Confidence 66655544321000 0 000000
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEe--cC--C-CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV--EA--K-PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~--~~--~-~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
.....++|++||+..+.+++|...|+.+|.+..+.+. .+ + +|+|++.|..++++.+|+....++.++
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 0123469999999999999999999999987665554 22 2 799999999999999999855444443
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00069 Score=58.69 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=65.4
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhc-ccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC--
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFK-QFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-- 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~-~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~-- 84 (245)
+.+-.++++.|||.||-...|..+|+ .+.. ..|.|.+.|+.+ -|..|||.|.+.++|.....+|||+.+-
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLk----elL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLK----ELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHH----HHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 33456779999999999999999955 6666 345666665543 3568999999999999999999998885
Q ss_pred -CceEEEEEccccch
Q 025973 85 -DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 -g~~i~v~~~~~~~~ 98 (245)
++.|.+.|......
T Consensus 510 NPK~L~adf~~~del 524 (718)
T KOG2416|consen 510 NPKHLIADFVRADEL 524 (718)
T ss_pred CCceeEeeecchhHH
Confidence 56888888765433
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.05 E-value=0.0067 Score=39.10 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=42.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g 230 (245)
...+.+|. .|......||.++|++||.|. |.-+.+ .-|||...+.+.|..|+..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--CcEEEEeecHHHHHHHHHHhcc
Confidence 45667776 899999999999999999963 333334 3799999999999999988753
No 177
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.00 E-value=0.0011 Score=54.66 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=58.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+|.|.||.++.|.+++..+|...|+|..+.|+++. .-.|||.|.+...+..|- +|.++.|-++.|.|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 79999999999999999999999999999999842 248999999988877776 5778888777776653
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.97 E-value=0.00082 Score=56.03 Aligned_cols=67 Identities=25% Similarity=0.263 Sum_probs=55.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCC----------------eeeEEEEEecCHHHHHHHH
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK----------------HKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~----------------~kg~afV~F~~~~~A~~a~ 75 (245)
..++++|.+-|||.+-.-+. |..+|+.+|.|..|++.+.|. .+-+|+|+|...+.|.+|.
T Consensus 228 el~srtivaenLP~Dh~~en----l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYEN----LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHH----HHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 35899999999998877766 779999999999998876521 2458999999999999999
Q ss_pred HHHcCCc
Q 025973 76 EKMQGFP 82 (245)
Q Consensus 76 ~~l~~~~ 82 (245)
+.|+...
T Consensus 304 e~~~~e~ 310 (484)
T KOG1855|consen 304 ELLNPEQ 310 (484)
T ss_pred Hhhchhh
Confidence 9776533
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.92 E-value=0.0007 Score=52.78 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=46.4
Q ss_pred ccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025973 42 QFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 42 ~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
+||.|+++.+.. .-...|.+||.|...++|.+|+..||+-.|.|++|+.+++.-
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 899999875443 334679999999999999999999999999999999999653
No 180
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0034 Score=53.68 Aligned_cols=66 Identities=18% Similarity=0.357 Sum_probs=54.8
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhc-ccCCeEEEEecCC---CCeeeEEEEEecCHHHHHHHHHH
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFK-QFGTILEILAFKT---LKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~-~~G~v~~i~~~~~---~~~kg~afV~F~~~~~A~~a~~~ 77 (245)
......+.+|||||+||.-++-.+ |..+|+ -||.|..+-+..+ +-.+|-|=|.|++..+-.+||++
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~e----LA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEE----LAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHH----HHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445678899999999999999999 667777 7899988755543 44679999999999999999984
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.78 E-value=0.01 Score=42.29 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCccEEEEcCCC----CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVP----HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~----~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++-.+|.|+=|. ..-+...+...++.||.|.+|.+.- +.-|.|.|.+..+|-.|+.+++. ...|..+.+.|-.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 445568887554 3334455667778999999887753 35799999999999999999865 6678888888743
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.57 E-value=0.057 Score=37.26 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=53.8
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhccc-CCeEEEEecCCCC-eeeEEEEEecCHHHHHHHHHHHcCCccC---Cc
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILAFKTLK-HKGQAWLVFKDVASATAAVEKMQGFPFY---DK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~-~kg~afV~F~~~~~A~~a~~~l~~~~~~---g~ 86 (245)
...+..|.|--.|+.++..+. |..+.+.+ ..|..+++.+++. ++--+.+.|.+.++|......+||..|. ..
T Consensus 9 ~~~~~~~~~l~vp~~~~~~d~---l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE 85 (110)
T PF07576_consen 9 DERRSTLCCLAVPPYMTPSDF---LLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPE 85 (110)
T ss_pred CCCCceEEEEEeCcccccHHH---HHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCc
Confidence 344555555555655555431 33444444 4566778887765 5667889999999999999999998886 44
Q ss_pred eEEEEEc
Q 025973 87 PMRIQYA 93 (245)
Q Consensus 87 ~i~v~~~ 93 (245)
.++|-|.
T Consensus 86 ~ChvvfV 92 (110)
T PF07576_consen 86 TCHVVFV 92 (110)
T ss_pred eeEEEEE
Confidence 5666554
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.51 E-value=0.008 Score=47.89 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHhhcccCCeEEEEecCCC----CeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcccc
Q 025973 28 KIDQLKQSLHAVFKQFGTILEILAFKTL----KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTK 96 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G~v~~i~~~~~~----~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 96 (245)
-+++|...+..-++.||.|..|.+.... ..----||+|++.++|.+|+-.|||..|.||.+.-.|....
T Consensus 295 vd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 295 VDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred ccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 3455555577889999999987665421 11125899999999999999999999999999988886543
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.45 E-value=0.024 Score=34.61 Aligned_cols=52 Identities=17% Similarity=0.322 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccC----CCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHh
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQF----PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~----g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l 228 (245)
.|+|++++ .++-++|..+|..| + ..+|.-+.+. -|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 49999986 58888999999988 3 3556666664 5899999999999999865
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.43 E-value=0.013 Score=44.37 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=46.6
Q ss_pred CHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEEEEEec
Q 025973 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ--SLKIGQQQLLITYAK 244 (245)
Q Consensus 184 t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~ak 244 (245)
..+.|+.+|..|+.+..+...+.- +-..|.|.+.+.|..|...|+ +..|.|..++|-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 458899999999998877777765 368999999999999999999 999999999999874
No 186
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.37 E-value=0.0058 Score=55.33 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=61.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEEEEEec
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYAK 244 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~ak 244 (245)
+..+.|.+-..+-..|..+|+.||.|.+.+..++- ..|.|+|...+.|..|+.+++|..+. |-+.+|.|||
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34455556677888899999999999999888776 68999999999999999999998876 8899999987
No 187
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.33 E-value=0.0045 Score=51.71 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=53.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCe-eCCeEEEEEEe
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGF--KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK-IGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v--~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~-~~g~~i~v~~a 243 (245)
.+|++||...++.+||..+|... .+ ..-.++ +.||+||.+.+...|.+|.+.++|.. +.|+++.|..+
T Consensus 3 klyignL~p~~~psdl~svfg~a-k~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccc-cCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 48999999999999999999743 11 111122 25899999999999999999999954 67999988764
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.28 E-value=0.0056 Score=49.91 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=58.9
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.-.+||+||--.+|++||.+.|...-- ..+.+|.+. .+|.+||||+|...+.....+-++.|-...++|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 456899999999999997766654311 145555544 378999999999999999999999999999998854444
Q ss_pred E
Q 025973 92 Y 92 (245)
Q Consensus 92 ~ 92 (245)
.
T Consensus 158 ~ 158 (498)
T KOG4849|consen 158 S 158 (498)
T ss_pred c
Confidence 3
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.13 E-value=0.01 Score=44.78 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcc-cCCe---EEEE--ecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCc
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-FGTI---LEIL--AFK---TLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-~G~v---~~i~--~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~ 82 (245)
.....+|.|++||+..|+++ ++...+. ++.- ..+. ... .......|||.|.+.+++......++|..
T Consensus 4 ~~~~~KvVIR~LPP~Lteee----F~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEE----FWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp -----EEEEEEE-TTS-HHH----HCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cccCceEEEeCCCCCCCHHH----HHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 45567999999999999999 5555554 4444 2222 111 11123579999999999999999999977
Q ss_pred cCCc-----eEEEEEccc
Q 025973 83 FYDK-----PMRIQYAKT 95 (245)
Q Consensus 83 ~~g~-----~i~v~~~~~ 95 (245)
|.+. .-.|++|.-
T Consensus 80 F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 80 FVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EE-TTS-EEEEEEEE-SS
T ss_pred EECCCCCCcceeEEEcch
Confidence 7532 555666543
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.042 Score=44.11 Aligned_cols=75 Identities=9% Similarity=0.078 Sum_probs=58.0
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc-eEEEEEc
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK-PMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~-~i~v~~~ 93 (245)
..=|-|=++|+....- |-.+|++||.|.......+| ++-+|.|.+.-+|++|+. .||..|.|. .|-|...
T Consensus 197 D~WVTVfGFppg~~s~-----vL~~F~~cG~Vvkhv~~~ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-----VLNLFSRCGEVVKHVTPSNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchhH-----HHHHHHhhCeeeeeecCCCC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 5556677888776543 34899999999886555554 799999999999999999 799999887 6677776
Q ss_pred cccch
Q 025973 94 KTKSD 98 (245)
Q Consensus 94 ~~~~~ 98 (245)
..+.-
T Consensus 268 tDksv 272 (350)
T KOG4285|consen 268 TDKSV 272 (350)
T ss_pred CCHHH
Confidence 55543
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.00 E-value=0.13 Score=35.50 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=50.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEecCCC---eEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMVEAKP---GIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~v~l~~~~~---g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
...++.+-..|.-++-++|..+.+.+-. |..++++++.. =.++++|.+.++|..-...+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445555555666777778777776654 67888988753 37899999999999999999999886
No 192
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.037 Score=43.41 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=56.7
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--EEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC----CceEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY----DKPMR 89 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~----g~~i~ 89 (245)
..|+|.||+..++.+. +.+-|+.||+|.. +.....++..+-++|.|.+.-.|.+|...+..--|. ++...
T Consensus 32 a~l~V~nl~~~~sndl----l~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~ 107 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDL----LEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG 107 (275)
T ss_pred ceEEEEecchhhhhHH----HHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccC
Confidence 6799999999999999 7799999999975 334445667788999999999999999987543332 44555
Q ss_pred EEE
Q 025973 90 IQY 92 (245)
Q Consensus 90 v~~ 92 (245)
|..
T Consensus 108 VeP 110 (275)
T KOG0115|consen 108 VEP 110 (275)
T ss_pred CCh
Confidence 544
No 193
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.76 E-value=0.048 Score=34.77 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhccCCCe-----eEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 181 HDTTPMALQMFFSQFPGF-----KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 181 ~~~t~~~l~~~f~~~g~v-----~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+.++..+|..++...+.| -.|.+. ..|+||+-.. +.|..++..|++..+.|+++.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 678888999888877654 455554 3589999886 6899999999999999999999876
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.75 E-value=0.11 Score=31.65 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=37.4
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccC--CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHH
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAFKTLKHKGQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l 78 (245)
..|+|+|+.. ++-++|+.++..+|..-+ .|+-|.+ ..|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 5699999966 555676766655543224 3333322 25889999999999999754
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.75 E-value=0.019 Score=50.71 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=59.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
++..++||+|+...+..+-+..+...+|.|..++... |||+.|..+.-+.+|+..++-..++|..+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4566799999999999999999999999998776653 9999999999999999999888888877654
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.73 E-value=0.019 Score=43.28 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=45.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcc-CCCe---eEEEEecCC-------CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQ-FPGF---KEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~-~g~v---~~v~l~~~~-------~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
...|.||+||+.+|+++++..+++ ++.- .++.-..+. ..-|+|.|.+.++.......++|+.|-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 457999999999999999998887 6665 233211221 346999999999999999999997774
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.67 E-value=0.024 Score=42.99 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHc--CCccCCceEEEEEccc
Q 025973 31 QLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ--GFPFYDKPMRIQYAKT 95 (245)
Q Consensus 31 ~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~--~~~~~g~~i~v~~~~~ 95 (245)
++++.|+.+|..++.+......++- +-..|.|.+.++|.+|...|+ +..+.|..++|.|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF---rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF---RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT---TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC---CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4455588999999988887666543 468899999999999999999 8999999999999843
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.67 E-value=0.09 Score=32.61 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 181 ~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
..++-++++..+..|+ +.++..+++| =+|.|.+..+|.+.....+|..+.+.+|..
T Consensus 10 ~~~~v~d~K~~Lr~y~---~~~I~~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR---WDRIRDDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC---cceEEecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999985 3444556665 488999999999999999999999888764
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.43 E-value=0.065 Score=45.42 Aligned_cols=65 Identities=17% Similarity=0.336 Sum_probs=57.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
++++|+|-.+|..++-.||..|+..+- .|.+++++++. +-..++.|.+.++|......+||..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378899999999999999999998764 47999999875 347899999999999999999999886
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.19 E-value=0.1 Score=44.26 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhccc-CCeEEEEecCCCC-eeeEEEEEecCHHHHHHHHHHHcCCccC---Cc
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILAFKTLK-HKGQAWLVFKDVASATAAVEKMQGFPFY---DK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~-~kg~afV~F~~~~~A~~a~~~l~~~~~~---g~ 86 (245)
..+++.|+|-.+|..++-.||. .++..+ -.|..|++.++|. ++-..+|.|.+.++|....+.+||..|. ..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll----~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e 146 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLL----RFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE 146 (493)
T ss_pred CCCCcEEEEEeccccccHHHHH----HHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc
Confidence 4448999999999999999955 544444 4677787777665 4557889999999999999999998887 33
Q ss_pred eEEEEEc
Q 025973 87 PMRIQYA 93 (245)
Q Consensus 87 ~i~v~~~ 93 (245)
.+++-|.
T Consensus 147 ~Chll~V 153 (493)
T KOG0804|consen 147 VCHLLYV 153 (493)
T ss_pred ceeEEEE
Confidence 5555554
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.13 E-value=0.0071 Score=49.19 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCC--C----eeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL--K----HKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~--~----~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
..+-+||-+|+.....+++.+.- ..|.+||.|..|...++- . .--.+||.|...++|..|+...+|....|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~-eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERT-EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCc-ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 35678999999887665543222 689999999998766532 0 1125899999999999999999999999999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
++..+...+-.
T Consensus 155 lka~~gttkyc 165 (327)
T KOG2068|consen 155 LKASLGTTKYC 165 (327)
T ss_pred hHHhhCCCcch
Confidence 88888765443
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.77 E-value=0.063 Score=46.68 Aligned_cols=69 Identities=12% Similarity=0.274 Sum_probs=56.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQ--FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLI 240 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~--~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g--~~~~g~~i~v 240 (245)
..++++++.||..+..|+++.+|.. +-.+++|.+-.+. -=||+|.+..+|+.|...|.. +.|-||+|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4568999999999999999999985 5677888777654 468999999999999988865 5677887754
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.20 E-value=2.5 Score=34.22 Aligned_cols=85 Identities=14% Similarity=0.299 Sum_probs=62.7
Q ss_pred cccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCC----------CeeeEEEEEecCHHHHHHHH
Q 025973 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL----------KHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~----------~~kg~afV~F~~~~~A~~a~ 75 (245)
...+.|.-.+|.|...|+..+++--+ +...|-.||+|++|.+..+. +......+.|-+.+.|....
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~----Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHS----FLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHH----HHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 34577888899999999998888777 55899999999999776544 23457889999988876554
Q ss_pred ----HHHcC--CccCCceEEEEEcc
Q 025973 76 ----EKMQG--FPFYDKPMRIQYAK 94 (245)
Q Consensus 76 ----~~l~~--~~~~g~~i~v~~~~ 94 (245)
++|.. ..+....+.+.|..
T Consensus 82 NnvLQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 82 NNVLQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHHHHHHhcCCcceeEEEEE
Confidence 22332 34456677777754
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.18 E-value=0.24 Score=30.70 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=42.2
Q ss_pred ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 26 KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
.++-.+|+ ..+..|+ -..|+..++| =||.|.+.++|.++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K----~~Lr~y~-~~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFK----KRLRKYR-WDRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHH----HHHhcCC-cceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 44666755 5566774 4467777665 689999999999999999999888877655
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.15 E-value=0.034 Score=50.61 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=56.9
Q ss_pred EcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC--CceEEEEEccccc
Q 025973 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYAKTKS 97 (245)
Q Consensus 20 V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~--g~~i~v~~~~~~~ 97 (245)
+.|.+-..+... |..+|+.||.|.+.|..++- +.|.|.|.+.+.|..|..+++|.... |-+.+|.+++.-.
T Consensus 303 ~~nn~v~~tSss----L~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 303 LENNAVNLTSSS----LATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhcccccchHHH----HHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 334444556666 77999999999999886653 68999999999999999999996664 8899999987543
No 206
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.97 E-value=0.13 Score=42.28 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=55.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
.-++||+||---+|.+||.+..+..| .+.+++++-++ ||||+|...+.......++.|-.+.|+|..-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 34799999999999999998888766 35667776654 8999999999888889999888888886543
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.93 E-value=0.034 Score=47.29 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=57.5
Q ss_pred CccEEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDT-TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~-t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
....|-+.-.|... +..+|..+|..||.|..|.+-... .-|.|+|.+..+|-.|.. .++..|.++.|+|-|=
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34445555555433 678999999999999988886653 469999999999988876 6899999999999884
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=0.29 Score=39.47 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=46.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~ 237 (245)
-+-|.++|..- -.-|..+|++||.|.+.....+ -.+-.|.|.+.-+|.+||. -||+.|+|..
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n-gNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN-GNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC-CceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 35566666433 3456788999999876655533 3589999999999999998 5899998654
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.06 E-value=0.39 Score=42.02 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=50.5
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcc--cCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC--CccCCceE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQ--FGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDKPM 88 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~--~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~--~~~~g~~i 88 (245)
..|.|.++-||..+-+++++ .+|+. +-++++|.+-.+ .-=||.|++..||+.|++.|.. ..|.|+.|
T Consensus 174 kRcIvilREIpettp~e~Vk----~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVK----ALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHH----HHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 36778899999999999955 88874 557778755432 2368999999999999988754 45566644
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.36 E-value=0.17 Score=43.30 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=58.5
Q ss_pred CCeEEEcCCCcccCh-HHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 15 NNTIYINNLNEKVKI-DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~-~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
.+.|-+.-.|+..+. .+ |...|.+||.|..|.+... .-.|.|.|.+-.+|-+|.. .++-.|+|+.|+|.|.
T Consensus 372 hs~l~lek~~~glnt~a~----ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIAD----LNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhh----hhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 445555666665543 44 7799999999999866543 2469999999999999988 7999999999999998
Q ss_pred cccc
Q 025973 94 KTKS 97 (245)
Q Consensus 94 ~~~~ 97 (245)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7643
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.22 E-value=1.8 Score=27.47 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=31.8
Q ss_pred cccChHHHHHHHHHhhccc-CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 25 EKVKIDQLKQSLHAVFKQF-GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
..++..+|..+|.....-- ..|-.|.+.. .|+||+-... .|..++..|++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3456667543333322111 1444566654 4899998754 899999999999999999999764
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.73 E-value=0.35 Score=31.83 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhc
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFS 193 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~ 193 (245)
+.++|.|.|||....+++|++...
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 567899999999999999987654
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.31 E-value=0.11 Score=42.43 Aligned_cols=72 Identities=14% Similarity=0.319 Sum_probs=55.8
Q ss_pred cEEEEcCCCCCCCHHHH---HHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 172 NILFVQNVPHDTTPMAL---QMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l---~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
+.+|+-+|+..+..+.+ ...|.+||.|..|....+. .--++|.|...++|..|+...+|+...|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45777777766655544 3678899999888887743 113799999999999999999999999998777
Q ss_pred EEe
Q 025973 241 TYA 243 (245)
Q Consensus 241 ~~a 243 (245)
.++
T Consensus 158 ~~g 160 (327)
T KOG2068|consen 158 SLG 160 (327)
T ss_pred hhC
Confidence 654
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=3.7 Score=36.39 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=57.0
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHhccC----CCeeEEEEecCC-------------C-----------------------
Q 025973 170 PNNILFVQNVP-HDTTPMALQMFFSQF----PGFKEVRMVEAK-------------P----------------------- 208 (245)
Q Consensus 170 ~~~~l~v~nl~-~~~t~~~l~~~f~~~----g~v~~v~l~~~~-------------~----------------------- 208 (245)
.++.|-|-||+ ..+..+||..+|+.| |.|.+|.|++.. +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 56779999999 899999999998865 579999998831 1
Q ss_pred ----------------eEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 025973 209 ----------------GIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 209 ----------------g~afv~f~~~~~A~~A~~~l~g~~~~g~ 236 (245)
=||.|+|.+.+.|......++|..|...
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1799999999999999999999999833
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.65 E-value=0.58 Score=41.82 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
++.++.-+|||+|+...+..+- +......+|.|.++... -|+|..|....-+..|+..++...+.|..+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~----~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEF----WKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred cCCCCCceeEecchhhhhhHHH----HHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 4567789999999999999887 45777888988775332 2999999999999999998998888887665
Q ss_pred EEE
Q 025973 90 IQY 92 (245)
Q Consensus 90 v~~ 92 (245)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 544
No 216
>PF14893 PNMA: PNMA
Probab=83.83 E-value=1 Score=37.47 Aligned_cols=55 Identities=13% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE--EecCCCCeeeEEEEEecCH
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFKTLKHKGQAWLVFKDV 68 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~~~~~kg~afV~F~~~ 68 (245)
-+-+.|.|.|||.+|++++|.+.|...+...|...-. .+.+.-. ...|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeecccc
Confidence 3456789999999999999999999989888866433 3333322 34799999744
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.25 E-value=3.3 Score=33.51 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC------------CeEEEEEeCCHHHHHH----HHHHhCC--Ce
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------------PGIAFVEYGDEMQATV----AMQSLQS--LK 232 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~------------~g~afv~f~~~~~A~~----A~~~l~g--~~ 232 (245)
++-|.+.|+...++-......|-.||.|.+|+++.+. .-...+.|-+.+.+.. .++.|+. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3459999999999999999999999999999999864 2368889988877653 4444543 44
Q ss_pred eCCeEEEEEEe
Q 025973 233 IGQQQLLITYA 243 (245)
Q Consensus 233 ~~g~~i~v~~a 243 (245)
+....|.+.|.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 66777777774
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.76 E-value=6 Score=25.83 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=41.7
Q ss_pred EEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHH
Q 025973 19 YINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~ 76 (245)
|.=-.+.+++..+|++.++.+|.. .|..|..........-|||.+....+|...-.
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~V--kV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDV--KVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 333478899999999999999864 67777655433333469999999888887654
No 219
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=78.82 E-value=9.6 Score=26.43 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=32.0
Q ss_pred ccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHH
Q 025973 26 KVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~ 73 (245)
.++.+||++.|.+++.---.+.-+-..+ .|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5688999999999988654443443222 5677888876 666666554
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.42 E-value=25 Score=31.55 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCCCCeEEEcCCC-cccChHHHHHHHHHhhcccCCeEEEEecCC-------------CC---------------------
Q 025973 12 ISPNNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKT-------------LK--------------------- 56 (245)
Q Consensus 12 ~~~~~~l~V~nLp-~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-------------~~--------------------- 56 (245)
..++++|-|=||. ..+.-.+|-..|..+...-|.|++|.+.++ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 5568999999998 456677855444333333368888765542 22
Q ss_pred ----------------eeeEEEEEecCHHHHHHHHHHHcCCccC--CceEEEEEcc
Q 025973 57 ----------------HKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYAK 94 (245)
Q Consensus 57 ----------------~kg~afV~F~~~~~A~~a~~~l~~~~~~--g~~i~v~~~~ 94 (245)
..-||.|+|.+++.|...++.++|..|. +..+.+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1238999999999999999999999997 5577777643
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=77.56 E-value=11 Score=24.11 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHH
Q 025973 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~ 76 (245)
-|+=.++.+++..+|+++++.+|.- .|..|.........--|||.+..-+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~V--kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDV--KVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3444578999999999999999864 67777544322233469999988888776644
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.48 E-value=6.7 Score=31.68 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHH
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~ 69 (245)
.....+-|+++|||.++.-.||+..|+..-. .-.+|.. .| ..|-||+.|.|..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~---~pm~isw--kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKREC---TPMSISW--KG-HFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCC---CceeEee--ec-CCcceeEecCCcc
Confidence 3445677999999999999998877765522 1122221 22 3467999998754
No 223
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=70.49 E-value=6.1 Score=28.64 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=77.3
Q ss_pred eEEEcCCC--cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025973 17 TIYINNLN--EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 17 ~l~V~nLp--~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
...|+.+. ...+-..|...|.......|.+.-. ... .++..+.|.+.+++.+++. .....+.|..+.+....
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~-~l~----~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIR-DLG----DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEE-EeC----CCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34444443 2356777877788887777766333 322 3789999999999999988 45566777777665543
Q ss_pred ccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEE
Q 025973 95 TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNIL 174 (245)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (245)
+...... . ... ...-=+
T Consensus 91 ~~~~~~~-~------------------------------------------------------------~~~--~~~vWV 107 (153)
T PF14111_consen 91 PDFNPSE-V------------------------------------------------------------KFE--HIPVWV 107 (153)
T ss_pred ccccccc-c------------------------------------------------------------cee--ccchhh
Confidence 2211000 0 000 001126
Q ss_pred EEcCCCCC-CCHHHHHHHhccCCCeeEEEEecC
Q 025973 175 FVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEA 206 (245)
Q Consensus 175 ~v~nl~~~-~t~~~l~~~f~~~g~v~~v~l~~~ 206 (245)
-|.|||.. .+++-+..+-+.+|.+..+.....
T Consensus 108 ri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 108 RIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 67799954 678889999999999988876653
No 224
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.90 E-value=5.5 Score=29.94 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=47.4
Q ss_pred EEEcCCCCCC--CHHH---HHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEEEEEe
Q 025973 174 LFVQNVPHDT--TPMA---LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLITYA 243 (245)
Q Consensus 174 l~v~nl~~~~--t~~~---l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~a 243 (245)
+++-+++..+ +.++ ..++|..|....-..+++.. +...|.|.+++.|..|.-.++++.|.|+ .++.=||
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 6666776333 3333 34555555554444455544 4678999999999999999999999988 6766655
No 225
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=67.50 E-value=36 Score=23.03 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=30.3
Q ss_pred ccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHH
Q 025973 26 KVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a 74 (245)
..+..+|++.|..++..--...-|.-.+ .|.+.|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4577899999998888543444443333 3456677765 5666666543
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.13 E-value=15 Score=31.31 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=43.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEecCCCeEEEEEeCCHHHHHHHHHH
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQS 227 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~v~l~~~~~g~afv~f~~~~~A~~A~~~ 227 (245)
-++|-|.|+|...--+||...|+.|++- .+|+-+.+ ..||-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd--thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD--THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec--ceeEEeecchHHHHHHhhc
Confidence 3579999999988889999999999763 33433333 3799999999999999973
No 227
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.90 E-value=23 Score=21.60 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhhcccCCeEEEEec
Q 025973 29 IDQLKQSLHAVFKQFGTILEILAF 52 (245)
Q Consensus 29 ~~~l~~~l~~~F~~~G~v~~i~~~ 52 (245)
.++|.+.|+++|+..|.|.-+.+.
T Consensus 4 re~i~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 4 REEITAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEEc
Confidence 456777799999999999775443
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=66.84 E-value=8.2 Score=26.92 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=24.7
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHH
Q 025973 173 ILFVQNVPHD---------TTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQ 220 (245)
Q Consensus 173 ~l~v~nl~~~---------~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~ 220 (245)
+++|-|++.. .+.+.|.+.|+.|..++-..+.-.. .|+++|+|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 4777787532 4668899999999886533333222 6899999976543
No 229
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.11 E-value=1.5 Score=28.87 Aligned_cols=22 Identities=9% Similarity=0.299 Sum_probs=18.6
Q ss_pred CCCCCeEEEcCCCcccChHHHH
Q 025973 12 ISPNNTIYINNLNEKVKIDQLK 33 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~ 33 (245)
....++|.|+|||...++++|+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred cccCCEEEEeCCCCCCChhhhe
Confidence 4567899999999999999855
No 230
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.30 E-value=15 Score=27.67 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=52.1
Q ss_pred eEEEcCCCcccC-hHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc-eEEEEEcc
Q 025973 17 TIYINNLNEKVK-IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK-PMRIQYAK 94 (245)
Q Consensus 17 ~l~V~nLp~~~~-~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~-~i~v~~~~ 94 (245)
.+.+.+++..+. ..+.+.....+|.+|....-..+. ++.+.--|.|.+.+.|..|...+++..|.|. .++..++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 355666665442 233344455677766554443333 2345677999999999999999999999988 88888875
Q ss_pred cc
Q 025973 95 TK 96 (245)
Q Consensus 95 ~~ 96 (245)
+.
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 54
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.26 E-value=14 Score=25.74 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=26.1
Q ss_pred EEEcCCCccc---------ChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHH-HHHHHHHHc
Q 025973 18 IYINNLNEKV---------KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS-ATAAVEKMQ 79 (245)
Q Consensus 18 l~V~nLp~~~---------~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~-A~~a~~~l~ 79 (245)
+.|-|++... +.++ |.+.|+.|.++....+....-..|++.|.|.+.-. =..|++ |+
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~----l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~-l~ 77 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEE----LLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR-LE 77 (116)
T ss_dssp EEEE----EE-TTS-EE---SHH----HHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH-HH
T ss_pred EEEEcCccccCCCCceeccCHHH----HHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH-HH
Confidence 4566665433 4456 44666667666543333233467899999965543 455554 44
No 232
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=60.31 E-value=12 Score=31.51 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=48.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEecCC-------CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~-v~~v~l~~~~-------~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
.+.|++||...+++++.....++-. +.+..+.+.. .+.++|.|..+++...-..-++|++|-
T Consensus 9 Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 9 KVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4889999999999999888887654 4555555422 457999999999988888888887764
No 233
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=59.46 E-value=57 Score=23.33 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=29.2
Q ss_pred ccChHHHHHHHHHhhc-ccCCeEEEEecC----CCCeeeEEEEEecCHHHHHH
Q 025973 26 KVKIDQLKQSLHAVFK-QFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~-~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~ 73 (245)
..+..||++.|..++. .--...-|.-.+ .|.+.|||.| |.+.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4577899999988888 443444443222 3456777766 556655544
No 234
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=56.47 E-value=53 Score=21.37 Aligned_cols=70 Identities=6% Similarity=0.041 Sum_probs=49.2
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccC-CeEEE-EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEI-LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i-~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
--|+|..++..++-++|.+.++++|+..- ..-.+ +....| --|.|++.++-..|++.+.-..=.+-.|+|
T Consensus 9 gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEG-----Dp~tiSS~~EL~EA~rl~~~n~~~~l~ihv 80 (83)
T cd06404 9 GDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEG-----DPCTISSQMELEEAFRLYELNKDSELNIHV 80 (83)
T ss_pred CcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCC-----CceeecCHHHHHHHHHHHHhcCcccEEEEe
Confidence 34889999999999999999999998763 23334 444445 347889999999998855433222445555
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.92 E-value=47 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=35.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCH
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~ 218 (245)
..-|+++||+...--.||+..+..-+.+---.-..+..|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 345999999999999999999888776522222334457899999664
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=48.52 E-value=10 Score=28.53 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=42.4
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCC----CeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL----KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~----~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.+++|.. |.+...++ |.++-+ |.+..|.+.+.+ ..+|.-||.|...+.|...+. -+...+..+.|
T Consensus 111 ~r~v~~K--~td~ql~~----l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDD----LNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETEL 179 (205)
T ss_pred Hhhhhcc--CCHHHHHH----HHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHH
Confidence 4566666 44445555 324434 888888776533 357899999999999999887 35444443333
No 237
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.73 E-value=55 Score=29.15 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=48.7
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..-=.||||+.-... ..-..|..+-++||+|-.+++- ..-.|.-++.+.|.+++. -|+..+.+|..
T Consensus 32 ~~lPiIGnl~~l~~~-~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 32 PPLPIIGNLHQLGSL-PPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCCccccHHHcCCC-chhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 344467887755444 3344477888899999988763 235788899999999999 68888888865
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.98 E-value=43 Score=27.13 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=44.3
Q ss_pred CCCCCCCCeEEEcCCCccc------------ChHHHHHHHHHhhcccCCeEEEEec--------CCCCe-----eeEE--
Q 025973 9 GNEISPNNTIYINNLNEKV------------KIDQLKQSLHAVFKQFGTILEILAF--------KTLKH-----KGQA-- 61 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~------------~~~~l~~~l~~~F~~~G~v~~i~~~--------~~~~~-----kg~a-- 61 (245)
..+...--+||+.+||..+ +++- |+..|+.||.|..|.+. -+|+. .||+
T Consensus 143 mkpgerpdti~la~ip~kwf~lkedg~~dlpse~r----lr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g 218 (445)
T KOG2891|consen 143 MKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDR----LRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFG 218 (445)
T ss_pred cCCCCCCCceeecCCcceeeeecccccccCChHHH----HHHHHHHhccceecCCcccchhHHHhcCccccceeeccccC
Confidence 3445556789999999654 3444 77999999999876332 13332 3343
Q ss_pred -------EEEecCHHHHHHHHHHHcCCcc
Q 025973 62 -------WLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 62 -------fV~F~~~~~A~~a~~~l~~~~~ 83 (245)
||+|.....-..|+..|.|..+
T Consensus 219 ~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 219 GDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred cchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 4555555555566666666444
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.69 E-value=2e+02 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred CCHHHHHHHhccCCCeeEEEEec
Q 025973 183 TTPMALQMFFSQFPGFKEVRMVE 205 (245)
Q Consensus 183 ~t~~~l~~~f~~~g~v~~v~l~~ 205 (245)
.++.-|+..|..||.|..|.++-
T Consensus 173 pse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcc
Confidence 56788999999999998887764
No 240
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.44 E-value=49 Score=20.63 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=24.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 59 g~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.+.+|.|.+..+|.+|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 368999999999999999888766654433
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.27 E-value=41 Score=27.88 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=25.4
Q ss_pred EEEEecCHHHHHHHHHHHcCCccCCceEEEEEccccc
Q 025973 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKS 97 (245)
Q Consensus 61 afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~ 97 (245)
|||.|++..+|..|.+.+.... ++.+++..|....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999655443 3455776664433
No 242
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=38.76 E-value=1.5e+02 Score=21.69 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=40.3
Q ss_pred eEEEcCCC-cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 17 TIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 17 ~l~V~nLp-~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
.+|+++|- ..-+-++|+.+|..++..- +..+..... ..-+.+.|+|.-+.+|..-+..|-.
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~--~~~l~~~~~-~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPR--ISDLKVRKV-EPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcc--cccceeecc-ccCceEEEEEechHHHHHHHHHHhh
Confidence 35677776 3345578888888887653 233333322 2235899999999998888877743
No 243
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=37.81 E-value=1.1e+02 Score=19.81 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=27.0
Q ss_pred cccChHHHHHHHHHhhcccCCeEEEEec--CC--CCeeeEEEEEecCHHHHHH
Q 025973 25 EKVKIDQLKQSLHAVFKQFGTILEILAF--KT--LKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~--~~~kg~afV~F~~~~~A~~ 73 (245)
...+..+|++.|..++..=....-|.-. .. +.+.|||.| |.+.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 3457789999998888764333333222 23 345667765 566665543
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.53 E-value=5.3 Score=35.32 Aligned_cols=68 Identities=12% Similarity=0.269 Sum_probs=49.5
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..|.|+++|+++..+-.+ |..+++.+..+..+-... ......+++|.|+---....|..+||+..+..
T Consensus 230 ke~sll~rni~Pnis~ae----Ie~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAE----IENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHH----HHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 467899999999999999 669999886666553322 12234688999987777777777788766653
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=36.83 E-value=1.4e+02 Score=21.84 Aligned_cols=53 Identities=9% Similarity=0.223 Sum_probs=35.9
Q ss_pred EcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHH
Q 025973 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 20 V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a 74 (245)
+=-++..++..+|++.++.+|.- .|..|.........--|||.+....+|...
T Consensus 86 vF~Vd~kAnK~qIK~AVEklf~V--kV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKLYDV--KVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCC--eeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 33378899999999999999874 576764332111223599999777665544
No 246
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.93 E-value=45 Score=28.29 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-----CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-----TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-----~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
..-..|-|.+||+..++.++-+.|.- |. ..+....+.. .....+.|||.|.+.++.......++|..|.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~--~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FP--EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-Cc--cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 34577899999999999985443322 11 1111111111 1123478999999999999888888887764
No 247
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=35.71 E-value=95 Score=18.24 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCH----HHHHHHHHH
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE----MQATVAMQS 227 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~----~~A~~A~~~ 227 (245)
++.|.||........+.+.++..-.|.++.+-... +.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-CEEEEEEecCCCCHHHHHHHHHH
Confidence 47788888888889999999998889988887765 5788888754 455556554
No 248
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.08 E-value=89 Score=20.19 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=24.0
Q ss_pred CeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC
Q 025973 197 GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 197 ~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g 230 (245)
.|.++....+-+||-||+=.++.+...|++.+.+
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 4566666666689999999999999999886654
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.00 E-value=99 Score=26.58 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=39.2
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCe-EEE-EecCCCCeeeEEEEEecCHHHHHHHHHH
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI-LEI-LAFKTLKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v-~~i-~~~~~~~~kg~afV~F~~~~~A~~a~~~ 77 (245)
-++|-|.++|...--+| |-..|+.|+.- -.| |+.. -.||..|++...|..|+..
T Consensus 391 pHVlEIydfp~efkteD----ll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTED----LLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHH----HHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhhc
Confidence 46788999997766666 55778888532 123 3332 3799999999999999984
No 250
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=34.89 E-value=59 Score=29.38 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK 53 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~ 53 (245)
.+..||+.+|+.+..++--.+.|+ ..-..+.+.+.+
T Consensus 300 ~~~evY~nGlSTSlP~dVQ~~~ir----sipGlEna~i~r 335 (621)
T COG0445 300 DTDEVYPNGLSTSLPEDVQEQIIR----SIPGLENAEILR 335 (621)
T ss_pred CCceEecCcccccCCHHHHHHHHH----hCcccccceeec
Confidence 346799999999998876443343 334455554444
No 251
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=33.29 E-value=1.7e+02 Score=21.34 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHhhcccC-CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 28 KIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
.|+.+++.|....+..| .|.+|.... ..+||-||+....+++..++..+.+
T Consensus 17 ~E~~V~~~L~~~~~~~~~~i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 17 QERNVALMLAMRAKKENLPIYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 46777777777665333 266665543 2579999999988888888876654
No 252
>PHA01632 hypothetical protein
Probab=32.19 E-value=53 Score=19.44 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=17.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcc
Q 025973 174 LFVQNVPHDTTPMALQMFFSQ 194 (245)
Q Consensus 174 l~v~nl~~~~t~~~l~~~f~~ 194 (245)
+.|..+|...|+++|+.++..
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456688999999999987753
No 253
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=31.86 E-value=1.6e+02 Score=19.80 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 30 DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 30 ~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
+++.+.|+-+-..=|.|..|.+....-..=.+-+...+..++.+.++.++.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 334444767767667888887665444444678889999999999998874
No 254
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=30.40 E-value=1.6e+02 Score=19.54 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=23.8
Q ss_pred EEEcCCCcccChHHHHHHHHHhhcccCCeEEEEe
Q 025973 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA 51 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~ 51 (245)
.|+=.++..++..||+++|+.+|.- .|..|..
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~V--kV~~VnT 53 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGV--KVESVNT 53 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCC--ceeEEEE
Confidence 3444478899999999999999863 5666643
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.66 E-value=48 Score=26.22 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=28.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVR 202 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~ 202 (245)
+...++|+-|+|..+|++.|..+.+..|.+....
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3456799999999999999999999988654443
No 256
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=29.24 E-value=2e+02 Score=20.95 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=26.4
Q ss_pred eeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC
Q 025973 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 198 v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g 230 (245)
|.++.+...-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 566666666689999999988888888887765
No 257
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=28.66 E-value=1.4e+02 Score=19.58 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhccc--CCeEEEEecCCCCeeeEEEEEec
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF--GTILEILAFKTLKHKGQAWLVFK 66 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~--G~v~~i~~~~~~~~kg~afV~F~ 66 (245)
+...-|||+|++..+-+.- ...+.+.. |.+.-+ ..+.+..||+|-...
T Consensus 23 Ei~~GVyVg~~s~rVRe~l----W~~v~~~~~~G~a~m~--~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERL----WERVTEWIGDGSAVMV--WSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHH----HHHHHhhCCCccEEEE--EccCCCCCEEEEEeC
Confidence 4466799999998877653 22333322 333333 333335688887663
No 258
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=27.68 E-value=1.4e+02 Score=19.73 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=17.0
Q ss_pred eEEEEEecCHHHHHHHHHHHcC
Q 025973 59 GQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 59 g~afV~F~~~~~A~~a~~~l~~ 80 (245)
||-||.+...++.-.++..+.+
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCC
Confidence 9999999876666777766655
No 259
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.97 E-value=1.7e+02 Score=18.55 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhc-------cCCCeeEEEEecCC-CeEEEEEe--CCHHHHHHHHHHhCCCee
Q 025973 173 ILFVQNVPHDTTPMALQMFFS-------QFPGFKEVRMVEAK-PGIAFVEY--GDEMQATVAMQSLQSLKI 233 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~-------~~g~v~~v~l~~~~-~g~afv~f--~~~~~A~~A~~~l~g~~~ 233 (245)
.|..+++|..+|.++|...-. .+..|.+++...+. .+-.|+.| .+++...++-+ -.|...
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCc
Confidence 467789998899999875543 44566666655542 24455555 55554444444 446554
No 260
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=26.49 E-value=1.7e+02 Score=18.35 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=41.0
Q ss_pred cCCCcccChHHHHHHHHHhhcccCCeEEEEec-CCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 21 NNLNEKVKIDQLKQSLHAVFKQFGTILEILAF-KTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 21 ~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~-~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
-.++..++-++|...|...|...+.-..+... ..| -+|...+.++-..|++.+...
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-----D~V~i~sd~Dl~~a~~~~~~~ 72 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-----DLVTISSDEDLQEAIEQAKES 72 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-----SEEEESSHHHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHHhc
Confidence 44677778899999999999887433344333 332 679999999999999976543
No 261
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=25.80 E-value=34 Score=21.27 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCcccChHH
Q 025973 14 PNNTIYINNLNEKVKIDQ 31 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~ 31 (245)
-++++|||++|..+-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 378999999998876655
No 262
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=25.45 E-value=1.4e+02 Score=16.99 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=26.4
Q ss_pred HHHhhcccC-CeEEEEecCCCCeeeEEEEEecCHHHHHHHH
Q 025973 36 LHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 36 l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~ 75 (245)
+.+.+...| .|..+.........+..-+.+.+.+.|.+++
T Consensus 15 i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 15 VTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 336666664 7777765544334567778888888888765
No 263
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=24.90 E-value=2.8e+02 Score=21.33 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC-CccC--CceEEEE
Q 025973 28 KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFY--DKPMRIQ 91 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~-~~~~--g~~i~v~ 91 (245)
+.++.+++|.++-.. + +.+..+|...|-+.+...+.++|..++..+-. ..+. +..+.|+
T Consensus 25 ~~~~A~~~l~~~~~p---~--~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 25 DYEEALEYLEEQGYP---Y--VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SHHHHHHHHHHHSSS---E--EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CHHHHHHHHHhcCCC---c--eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 456655555444322 2 33444566556667777999999999987743 3332 3455443
No 264
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=11 Score=32.34 Aligned_cols=71 Identities=6% Similarity=-0.178 Sum_probs=48.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++..+|..++++++...|+-||.|..+.+-+.- +=.+|+.-.+ ..|...+.-+--..++|..+++.+|+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 46778889999999999999999999877776532 2256776654 34555555444455566666666553
No 265
>PHA03008 hypothetical protein; Provisional
Probab=23.74 E-value=1.5e+02 Score=22.93 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=34.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g 209 (245)
-...++|+|+..-....-+..+|..|..+..+-++++...
T Consensus 20 ~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg~~d 59 (234)
T PHA03008 20 ICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPGDID 59 (234)
T ss_pred cccEEEEecccccccccHHHHHHhhccccceEEEccCCcc
Confidence 3457999999988899999999999999999999886533
No 266
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.68 E-value=1.2e+02 Score=24.86 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=37.9
Q ss_pred eEEEcCCCccc-ChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHH
Q 025973 17 TIYINNLNEKV-KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 17 ~l~V~nLp~~~-~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~ 76 (245)
++++. +.|+ ++++++..+...-..||.| +|.+..-|... ..|....+.++.+..+.
T Consensus 64 ~v~~~--~~Dvs~~~~~~~~~~~~~~~fg~v-DvLVNNAG~~~-~~~~~~~~~~~~~~~md 120 (282)
T KOG1205|consen 64 KVLVL--QLDVSDEESVKKFVEWAIRHFGRV-DVLVNNAGISL-VGFLEDTDIEDVRNVMD 120 (282)
T ss_pred ccEEE--eCccCCHHHHHHHHHHHHHhcCCC-CEEEecCcccc-ccccccCcHHHHHHHhh
Confidence 44443 3444 4466666666666889988 56666667667 78888888888887765
No 267
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=22.69 E-value=2.6e+02 Score=19.18 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=28.2
Q ss_pred ccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHH
Q 025973 26 KVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~ 73 (245)
.-+..+|++.|.++...=-....|...+ .+.++|||-| |.|.+.|..
T Consensus 31 TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 31 TPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 3467888888888766543333343333 3456777765 566666554
No 268
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.98 E-value=1.6e+02 Score=19.81 Aligned_cols=51 Identities=12% Similarity=0.288 Sum_probs=29.2
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecC
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~ 67 (245)
+...-|||++++..+-+.- =+.+.+.... |.+.-+. .+.+..||+|-.+..
T Consensus 25 Ev~~GVyVg~~S~rVRd~l-W~~v~~~~~~-G~avmv~--~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMI-WQQVTQLAEE-GNVVMAW--ATNTESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHH-HHHHHHhCCC-CcEEEEE--cCCCCCCcEEEecCC
Confidence 4456799999887766542 2223333322 5554444 333444888877654
No 269
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.93 E-value=67 Score=25.44 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE 48 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~ 48 (245)
.......++|+-|+|..++++.|+ .+-+.+|-++.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lk----r~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLK----RFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHH----HHHHHhhhhhh
Confidence 345667899999999999999966 44455565554
No 270
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=21.81 E-value=90 Score=17.67 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=18.5
Q ss_pred EcCCCcccChHHHHHHHHHhhccc
Q 025973 20 INNLNEKVKIDQLKQSLHAVFKQF 43 (245)
Q Consensus 20 V~nLp~~~~~~~l~~~l~~~F~~~ 43 (245)
|-||+..++.++|++..+.+...+
T Consensus 5 vLgl~~~~~~~~ik~~y~~l~~~~ 28 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKLALKY 28 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHH
Confidence 457888999999887777776655
No 271
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.89 E-value=2.1e+02 Score=25.53 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=41.4
Q ss_pred EEEcCCCC--C-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 174 LFVQNVPH--D-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 174 l~v~nl~~--~-~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
=+|+||.. . ..-..+..+=..||.|..+++-. .-.|.-.+.+.|..|+. -|+..|.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~----~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS----VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC----ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 35666652 1 13445556656899999777722 24677788899999997 57888888875
No 272
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.87 E-value=52 Score=28.19 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCcccChH----HHHHHHHHhhcc--cCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHH
Q 025973 13 SPNNTIYINNLNEKVKID----QLKQSLHAVFKQ--FGTILEILAFK---TLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~----~l~~~l~~~F~~--~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~ 76 (245)
..-+.+|+.+.+...+.+ +..+-+...|.. .+++..|+..+ +..++|.-|++|...+.|+++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345677888887666555 111126688888 67777776665 44577889999999999999864
No 273
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=20.78 E-value=6.5e+02 Score=23.49 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCC--eEEEEecCCCCeeeEEE-EEecCHHHHHHHHHHH
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGT--ILEILAFKTLKHKGQAW-LVFKDVASATAAVEKM 78 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~--v~~i~~~~~~~~kg~af-V~F~~~~~A~~a~~~l 78 (245)
.++|.|+-||+.++.+.+++.|.++-.. |. |.++++..+ ++.-| |++.....+...+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~-~ki~I~~i~D~s~---~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARK-GKIKISSINDYTA---ENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHc-CCCccceeEeCCC---CcEEEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999888777643 44 455555422 23333 3444444444444433
No 274
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=20.58 E-value=64 Score=19.61 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=11.2
Q ss_pred cCCCcccChHHHHHHHHHhhcccC
Q 025973 21 NNLNEKVKIDQLKQSLHAVFKQFG 44 (245)
Q Consensus 21 ~nLp~~~~~~~l~~~l~~~F~~~G 44 (245)
.++.+.++.++|+.|. ++-..||
T Consensus 40 ~~~kpSVs~~dl~~ye-~w~~~FG 62 (62)
T PF09336_consen 40 KKVKPSVSQEDLKKYE-EWTKEFG 62 (62)
T ss_dssp HTCGGSS-HHHHHHHH-HHHHHTS
T ss_pred HHcCCCCCHHHHHHHH-HHHHHcC
Confidence 3455666666765433 3334444
No 275
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.46 E-value=88 Score=20.63 Aligned_cols=27 Identities=4% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCCcccChHHHHHHHHHhhcccCCeEEEE
Q 025973 22 NLNEKVKIDQLKQSLHAVFKQFGTILEIL 50 (245)
Q Consensus 22 nLp~~~~~~~l~~~l~~~F~~~G~v~~i~ 50 (245)
.++.+++..||+++|+.+|.- .|..|.
T Consensus 26 ~V~~~atK~~Ik~aie~iy~V--~V~~Vn 52 (91)
T PF00276_consen 26 EVDPRATKTEIKEAIEKIYGV--KVKKVN 52 (91)
T ss_dssp EETTTSTHHHHHHHHHHHHTS--EEEEEE
T ss_pred EEeCCCCHHHHHHHHHhhcCC--CeeEEE
Confidence 468899999999999999864 466663
No 276
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.06 E-value=23 Score=31.58 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
.+.++++|+++..+-++|...++.+-.+..+-+.... ...+.|.|.---...-|+-+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3469999999999999999999998777666655432 235778887666666666667665543
Done!